Metagenome Family F083545

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F083545
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	48 residues
Representative Sequence	AESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGMSALCQKRL
Number of Associated Samples	72
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.73 %
% of genes near scaffold ends (potentially truncated)	96.43 %
% of genes from short scaffolds (< 2000 bps)	75.89 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (80.357 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (41.964 % of family members)
Environment Ontology (ENVO)	Unclassified (68.750 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.357 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 12.99% Coil/Unstructured: 87.01%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF04392	ABC_sub_bind	37.50
PF13561	adh_short_C2	5.36
PF02371	Transposase_20	4.46
PF00106	adh_short	3.57
PF03401	TctC	1.79
PF01381	HTH_3	1.79
PF08734	GYD	1.79
PF01687	Flavokinase	1.79
PF07859	Abhydrolase_3	1.79
PF12833	HTH_18	1.79
PF01548	DEDD_Tnp_IS110	0.89
PF13676	TIR_2	0.89
PF04828	GFA	0.89
PF08546	ApbA_C	0.89
PF12680	SnoaL_2	0.89
PF13751	DDE_Tnp_1_6	0.89
PF07536	HWE_HK	0.89
PF02518	HATPase_c	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	37.50
COG3547	Transposase	Mobilome: prophages, transposons [X]	5.36
COG0196	FAD synthase	Coenzyme transport and metabolism [H]	1.79
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	1.79
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.79
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	1.79
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.89
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.89
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.89
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.36 %
Unclassified	root	N/A	19.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.36 %
Unclassified	root	N/A	19.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.36 %
Unclassified	root	N/A	19.64 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	63.39 %
Unclassified	root	N/A	19.64 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.79 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	51.79 %
Unclassified	root	N/A	19.64 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.79 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	38.39 %
Unclassified	root	N/A	19.64 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.57 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.79 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	33.93 %
Unclassified	root	N/A	19.64 %
Alphaproteobacteria bacterium 65-37	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-37	2.68 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.79 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.89 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.89 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	33.93 %
Unclassified	root	N/A	19.64 %
Alphaproteobacteria bacterium 65-37	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-37	2.68 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.79 %
Methylorubrum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum	0.89 %
unclassified Xanthobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.89 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.64 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	7.14 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	5.36 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	2.68 %
Alphaproteobacteria bacterium 65-37	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-37	2.68 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.79 %
Xanthobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	0.89 %
Methylorubrum populi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum populi	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.89 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.64 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	7.14 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	3.57 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	2.68 %
Alphaproteobacteria bacterium 65-37	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-37	2.68 %
Streptomyces olivochromogenes	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces olivochromogenes	1.79 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.89 %
Bradyrhizobium sp. Ai1a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	0.89 %
Xanthobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	0.89 %
Methylorubrum populi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum populi	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.89 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1008567	Not Available	1659	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10159734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	539	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1011650	Not Available	1678	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10022178	Not Available	1518	Open in IMG/M
3300005332\|Ga0066388_100609257	All Organisms → cellular organisms → Bacteria	1713	Open in IMG/M
3300005332\|Ga0066388_101009105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1395	Open in IMG/M
3300005332\|Ga0066388_101190448	All Organisms → cellular organisms → Bacteria → Proteobacteria	1301	Open in IMG/M
3300005332\|Ga0066388_105556165	Not Available	638	Open in IMG/M
3300005439\|Ga0070711_101940580	All Organisms → cellular organisms → Bacteria → Proteobacteria	517	Open in IMG/M
3300005518\|Ga0070699_100399305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1243	Open in IMG/M
3300005764\|Ga0066903_100619696	Not Available	1881	Open in IMG/M
3300005764\|Ga0066903_103856867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	805	Open in IMG/M
3300005764\|Ga0066903_105359604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	677	Open in IMG/M
3300005764\|Ga0066903_105707733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	654	Open in IMG/M
3300005764\|Ga0066903_105849993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	645	Open in IMG/M
3300005764\|Ga0066903_107344417	Not Available	569	Open in IMG/M
3300005764\|Ga0066903_107771810	Not Available	551	Open in IMG/M
3300006028\|Ga0070717_10314860	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300009792\|Ga0126374_10949773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	670	Open in IMG/M
3300010047\|Ga0126382_10147230	Not Available	1606	Open in IMG/M
3300010358\|Ga0126370_12551494	Not Available	510	Open in IMG/M
3300010362\|Ga0126377_10332654	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1509	Open in IMG/M
3300010376\|Ga0126381_103047668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	665	Open in IMG/M
3300010376\|Ga0126381_103833151	Not Available	587	Open in IMG/M
3300010396\|Ga0134126_10151689	All Organisms → cellular organisms → Bacteria	2807	Open in IMG/M
3300010398\|Ga0126383_10762178	All Organisms → cellular organisms → Bacteria → Proteobacteria	1049	Open in IMG/M
3300012971\|Ga0126369_10514529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1257	Open in IMG/M
3300012971\|Ga0126369_11465836	Not Available	772	Open in IMG/M
3300012971\|Ga0126369_11762664	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300016294\|Ga0182041_11426626	Not Available	636	Open in IMG/M
3300016357\|Ga0182032_10413111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1094	Open in IMG/M
3300016371\|Ga0182034_10036654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3122	Open in IMG/M
3300016404\|Ga0182037_10091471	All Organisms → cellular organisms → Bacteria → Proteobacteria	2166	Open in IMG/M
3300016422\|Ga0182039_10335366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1265	Open in IMG/M
3300016422\|Ga0182039_10415131	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300016445\|Ga0182038_10058394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2618	Open in IMG/M
3300016445\|Ga0182038_10431385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-37	1111	Open in IMG/M
3300016445\|Ga0182038_11508104	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300018433\|Ga0066667_10057906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2379	Open in IMG/M
3300021178\|Ga0210408_10370073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1142	Open in IMG/M
3300021560\|Ga0126371_11548518	Not Available	790	Open in IMG/M
3300025915\|Ga0207693_10195260	All Organisms → cellular organisms → Bacteria → Proteobacteria	1592	Open in IMG/M
3300027874\|Ga0209465_10035946	All Organisms → cellular organisms → Bacteria	2343	Open in IMG/M
3300027874\|Ga0209465_10210633	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300031545\|Ga0318541_10513733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	670	Open in IMG/M
3300031546\|Ga0318538_10035339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2364	Open in IMG/M
3300031561\|Ga0318528_10611117	Not Available	584	Open in IMG/M
3300031564\|Ga0318573_10803217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum populi	505	Open in IMG/M
3300031572\|Ga0318515_10086118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1635	Open in IMG/M
3300031573\|Ga0310915_10060535	All Organisms → cellular organisms → Bacteria	2469	Open in IMG/M
3300031668\|Ga0318542_10043559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2006	Open in IMG/M
3300031679\|Ga0318561_10373762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces olivochromogenes	782	Open in IMG/M
3300031719\|Ga0306917_10058744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2619	Open in IMG/M
3300031724\|Ga0318500_10016057	All Organisms → cellular organisms → Bacteria	2759	Open in IMG/M
3300031744\|Ga0306918_10697692	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300031744\|Ga0306918_11459499	All Organisms → cellular organisms → Bacteria → Proteobacteria	523	Open in IMG/M
3300031768\|Ga0318509_10261220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	967	Open in IMG/M
3300031777\|Ga0318543_10191277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	907	Open in IMG/M
3300031778\|Ga0318498_10398479	Not Available	612	Open in IMG/M
3300031780\|Ga0318508_1238384	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300031797\|Ga0318550_10013309	All Organisms → cellular organisms → Bacteria → Proteobacteria	3240	Open in IMG/M
3300031805\|Ga0318497_10708466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	564	Open in IMG/M
3300031819\|Ga0318568_10025014	All Organisms → cellular organisms → Bacteria → Proteobacteria	3277	Open in IMG/M
3300031819\|Ga0318568_11009910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	514	Open in IMG/M
3300031821\|Ga0318567_10023111	All Organisms → cellular organisms → Bacteria → Proteobacteria	3032	Open in IMG/M
3300031835\|Ga0318517_10493890	All Organisms → cellular organisms → Bacteria → Proteobacteria	551	Open in IMG/M
3300031845\|Ga0318511_10033096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1989	Open in IMG/M
3300031845\|Ga0318511_10039879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1840	Open in IMG/M
3300031879\|Ga0306919_10050896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2740	Open in IMG/M
3300031879\|Ga0306919_10331129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1160	Open in IMG/M
3300031890\|Ga0306925_10523590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	1260	Open in IMG/M
3300031890\|Ga0306925_10524231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1259	Open in IMG/M
3300031890\|Ga0306925_10730640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1033	Open in IMG/M
3300031890\|Ga0306925_11165719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces olivochromogenes	774	Open in IMG/M
3300031897\|Ga0318520_10247437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1063	Open in IMG/M
3300031910\|Ga0306923_10069744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3918	Open in IMG/M
3300031910\|Ga0306923_10401785	All Organisms → cellular organisms → Bacteria	1559	Open in IMG/M
3300031910\|Ga0306923_10533974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1323	Open in IMG/M
3300031941\|Ga0310912_10033002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3532	Open in IMG/M
3300031941\|Ga0310912_10268542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1316	Open in IMG/M
3300031942\|Ga0310916_10790426	Not Available	799	Open in IMG/M
3300031945\|Ga0310913_10452965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	911	Open in IMG/M
3300031946\|Ga0310910_10072100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2496	Open in IMG/M
3300031946\|Ga0310910_10168520	All Organisms → cellular organisms → Bacteria	1685	Open in IMG/M
3300031946\|Ga0310910_10311987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1238	Open in IMG/M
3300031954\|Ga0306926_10215318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2383	Open in IMG/M
3300031959\|Ga0318530_10018433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2364	Open in IMG/M
3300032001\|Ga0306922_10525648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1259	Open in IMG/M
3300032001\|Ga0306922_10668533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1095	Open in IMG/M
3300032025\|Ga0318507_10111179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1150	Open in IMG/M
3300032035\|Ga0310911_10147615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1321	Open in IMG/M
3300032035\|Ga0310911_10243227	Not Available	1029	Open in IMG/M
3300032035\|Ga0310911_10707348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	583	Open in IMG/M
3300032041\|Ga0318549_10067395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-37	1512	Open in IMG/M
3300032043\|Ga0318556_10202270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1033	Open in IMG/M
3300032051\|Ga0318532_10009466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2952	Open in IMG/M
3300032059\|Ga0318533_10198160	All Organisms → cellular organisms → Bacteria → Proteobacteria	1437	Open in IMG/M
3300032059\|Ga0318533_10533408	Not Available	860	Open in IMG/M
3300032066\|Ga0318514_10019819	All Organisms → cellular organisms → Bacteria → Proteobacteria	3043	Open in IMG/M
3300032076\|Ga0306924_10440788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-37	1488	Open in IMG/M
3300032076\|Ga0306924_10508365	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
3300032076\|Ga0306924_12638188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	500	Open in IMG/M
3300032261\|Ga0306920_100192811	All Organisms → cellular organisms → Bacteria → Proteobacteria	3041	Open in IMG/M
3300032261\|Ga0306920_100437838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1942	Open in IMG/M
3300032261\|Ga0306920_100694996	All Organisms → cellular organisms → Bacteria	1499	Open in IMG/M
3300032261\|Ga0306920_101699401	Not Available	894	Open in IMG/M
3300033289\|Ga0310914_10151234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2047	Open in IMG/M
3300033289\|Ga0310914_10642838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	954	Open in IMG/M
3300033290\|Ga0318519_10030591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2536	Open in IMG/M
3300033290\|Ga0318519_10487401	Not Available	741	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.82%
Loam	Environmental → Terrestrial → Soil → Loam	15.18%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	73.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	41.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.57%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10085671	3300000580	Forest Soil	SEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTKRRHLDLSA*
AF_2010_repII_A1DRAFT_101597342	3300000597	Forest Soil	SEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTKSTHLGMSALCQ*
AF_2010_repII_A100DRAFT_10116504	3300000655	Forest Soil	EKREPVSDIDTGVVVSLKVLDPDGRLEKRTKRRHLDLSA*
AF_2010_repII_A001DRAFT_100221781	3300000793	Forest Soil	ESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTKRRHLDLSA*
Ga0066388_1006092572	3300005332	Tropical Forest Soil	WKGLGAESEEKREPVSNIDTAVVVSLKVLDPDGRLEKRTKRRHVGMSALCQKRTHAVQQTG*
Ga0066388_1010091051	3300005332	Tropical Forest Soil	WKGLGAESEEKREPVSDIDTGAVVSLKVLDPDGRLEKRTNRRRLDLSAKC*
Ga0066388_1011904483	3300005332	Tropical Forest Soil	KGLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTKRRHVGMSALCQ*
Ga0066388_1055561652	3300005332	Tropical Forest Soil	EKREPVSDIDTGVVVSLKVLDPDGRLEKRTNRRRLDLSA*
Ga0070711_1019405801	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	EEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSSRLGYVRFGQ*
Ga0070699_1003993052	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LFHLVFESPWWKGLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNISGFSVSPLCAIKRL*
Ga0066903_1006196962	3300005764	Tropical Forest Soil	EKREPVSDIDTGVVVSLKVLDPDGRLEKRTKSRPLGMSA*
Ga0066903_1038568672	3300005764	Tropical Forest Soil	KGLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNNGRFGMSALCQEPP*
Ga0066903_1053596041	3300005764	Tropical Forest Soil	WKGLGAESEEKREPVSNIDTAVVVSLKVLDPDGRLEKRTRRRHVGVSAMCH*
Ga0066903_1057077332	3300005764	Tropical Forest Soil	WKGLGAESEEKREPVSDIDTGVVDSLKALDPDGRLEKRTKRRRLGKTALCQNQSLPPM*
Ga0066903_1058499931	3300005764	Tropical Forest Soil	YKGLGAESEEKREPVSDIDTGVVDSLKALDPDGRLEKQTSLSVAGMSALCPKDEVIGLPAYG*
Ga0066903_1073444172	3300005764	Tropical Forest Soil	REPVSDIDTGVVVSLKVLDPDGRLEKRTNRRRLDLSA*
Ga0066903_1077718102	3300005764	Tropical Forest Soil	PVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGVSA*
Ga0070717_103148602	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	AESEEKREPASDIDTGVVDGLKVLDPDGRLEKRQSSAKLDVSSIS*
Ga0126374_109497731	3300009792	Tropical Forest Soil	KREPVSDIDTGVVVSLKVLDPDGRLEKRTKSRHLGMSAADIPFRFLA*
Ga0126382_101472303	3300010047	Tropical Forest Soil	AESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGMSALCQKRL*
Ga0126370_125514941	3300010358	Tropical Forest Soil	ESEEKREPVSNIDTAVVVSLKVLDPDGRLEKRTNSRHLDMSALCQQIKTIGS*
Ga0126377_103326541	3300010362	Tropical Forest Soil	REPVSDIDTGVVVSLKVLDPDGRLEKRTNRRRLDLSALCQEMG*
Ga0126381_1030476682	3300010376	Tropical Forest Soil	AESEEKREPVSDIDTGVVDSLKALDPDGRLEKRTKSDTAGMSALCQKRT*
Ga0126381_1038331512	3300010376	Tropical Forest Soil	PVSDIDTGVVVSLKVLDPDGRLEKRTNRRRLDLSA*
Ga0134126_101516891	3300010396	Terrestrial Soil	LFHLVFESPWWKGLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNISGFSVSPLCSIKRL*
Ga0126383_107621783	3300010398	Tropical Forest Soil	WKGLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRRVGRSGSCQERSF*
Ga0126369_105145291	3300012971	Tropical Forest Soil	SEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNCTHPPTSALCQ*
Ga0126369_114658361	3300012971	Tropical Forest Soil	GLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTSQARLDLSVECAN*
Ga0126369_117626641	3300012971	Tropical Forest Soil	EEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNRRRLDLSA*
Ga0182041_114266261	3300016294	Soil	KGLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLDMSALCQQIKTIGS
Ga0182032_104131111	3300016357	Soil	EKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLDMSALCQQIKTIGS
Ga0182034_100366545	3300016371	Soil	GAESEEKREPVSNIDTAVVVSLKVLDPDGRLEKRTNSRHLDMSALCQQIKTIGS
Ga0182037_100914711	3300016404	Soil	EEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNRRHLAMSVLCQKRL
Ga0182039_103353664	3300016422	Soil	REPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGISAL
Ga0182039_104151311	3300016422	Soil	WKGLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNRRHLAMSALCQKRL
Ga0182038_100583941	3300016445	Soil	IDTAVVVSLKVLDPDGRLEKRTKRRHVGMSALCQKRTHAVQQTG
Ga0182038_104313851	3300016445	Soil	GLGAESEEKREPVSNIDTAVVVSLKVLDPDGRLEKRTNSRHLDMSALCQQIKTIGS
Ga0182038_115081041	3300016445	Soil	EKREPVSDIDTGVVVSLKVLDPDGRLEKRTKSRHHGMPA
Ga0066667_100579063	3300018433	Grasslands Soil	AESEEKHEPVSDIDTEVVDSLKALDPDGRLEKQTSMRVLAMLHQCQ
Ga0210408_103700732	3300021178	Soil	PWWKGLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNISGFSVSPLCAIKRL
Ga0126371_115485183	3300021560	Tropical Forest Soil	SDIDTGVVVSLKVLDPDGRLEKRTTSGPAGMSALCQKRTFAMQQTSSFDATK
Ga0207693_101952603	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	SEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTKGRRDG
Ga0209465_100359465	3300027874	Tropical Forest Soil	EEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNRRRLDLSALCQEMG
Ga0209465_102106331	3300027874	Tropical Forest Soil	KGLGAESEEKREPVSDIDTGVVDSLKALDPDGRLEKRTKRRHAGVSALCQ
Ga0318541_103057641	3300031545	Soil	VSDIDTGVVVSLKVLDPDGRLEKRTNSRHLDMSALCQQIKTIGS
Ga0318541_105137333	3300031545	Soil	EKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGISAL
Ga0318538_100353391	3300031546	Soil	GAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNCRGSGMSALCQKQTYAVQQF
Ga0318528_106111171	3300031561	Soil	SEEKREPVSDIDTAVVVSLKVLDPDGRLEKRTKSRHAGMSALCQ
Ga0318573_108032172	3300031564	Soil	ESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRWLGLAALCQKRTSRSAPKQHDHPM
Ga0318515_100861181	3300031572	Soil	LGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLDMSALCQQIKTIGS
Ga0310915_100605355	3300031573	Soil	VSDIDTAVVVSLKVLDPDGRLEKRTKRRHVGMSALCQKRTHAVQQTG
Ga0318542_100435591	3300031668	Soil	SEEKREPVSNIDTAVVVSLKVLDPDGRLEKRTNCRGSGMSALCQKQTYAVQQF
Ga0318561_103737621	3300031679	Soil	EKREPVSDIDTGVVVSLKVLDPDGRLEKRTKSDATGMSA
Ga0306917_100587441	3300031719	Soil	GLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGISAL
Ga0318500_100160575	3300031724	Soil	SEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNRRHLAMSALCQKRL
Ga0306918_106976921	3300031744	Soil	WKGLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSTHRGRSAKCQTRLFDHRSRSAFPP
Ga0306918_114594991	3300031744	Soil	AESEEKREPVSNIDTAVVVSLKVLDPDGRLEKRTRRRHVGVSAMCH
Ga0318509_102612201	3300031768	Soil	VSDIDTGVVDSLKALDPDGRLEKRTNRRHLAMSALC
Ga0318543_101912771	3300031777	Soil	EEKREPVSNIDTAVVVSLKVLDPDGRLEKRTNCRGSGMSALCQKQTYAVQQF
Ga0318498_103984792	3300031778	Soil	SEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLDMSALCQQIKTIGS
Ga0318508_12383842	3300031780	Soil	KGLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNCRSLDISALCHKRL
Ga0318550_100133091	3300031797	Soil	EKREPVSDIDTGVVDSLKVLDPDGRLEKRTNRRHLAMSALCQKRL
Ga0318497_107084662	3300031805	Soil	GAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTIRKALDLSALCQKMG
Ga0318568_100250141	3300031819	Soil	GLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNRRHLAMSALCQKRL
Ga0318568_110099102	3300031819	Soil	MMEGPGAESEEKREPASDIETAAVDSLKCLTQIGRLEKRALVGHRGRSALCQNLR
Ga0318567_100231111	3300031821	Soil	EEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNRRHLAMSALCQKRL
Ga0318517_104938902	3300031835	Soil	SEEKREPMSDIDTGVVVSLKVLDPDGRLEKRTNCRGSGMSALCQKQTYAVQQF
Ga0318511_100330963	3300031845	Soil	EEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNCRGSGMSALCQKQTYAVQQF
Ga0318511_100398793	3300031845	Soil	SEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGMSALCQKMG
Ga0306919_100508964	3300031879	Soil	KGLGAESEEKREPVSNIDTAVVVSLKVLDPDGRLEKRTNCRGSGMSALCQKQTYAVQQF
Ga0306919_103311291	3300031879	Soil	ESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGISAL
Ga0306925_105235901	3300031890	Soil	SEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRRVGRSGSCQERSF
Ga0306925_105242313	3300031890	Soil	SEEKREPVSNIDTAVVVSLKVLDPDGRLEKRTRRRHVGVSAMCH
Ga0306925_107306401	3300031890	Soil	SEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGISAL
Ga0306925_111657191	3300031890	Soil	GLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTKSDATGMSA
Ga0318520_102474371	3300031897	Soil	TIIASYKGLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLDMSALCQQIKTIGS
Ga0306923_100697447	3300031910	Soil	EEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGISAL
Ga0306923_104017852	3300031910	Soil	AESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNCRSLDISALCHKRL
Ga0306923_105339741	3300031910	Soil	KGLGAESEEKREPVSNIDTAVVVSLKVLDPDGRLEKRTRRRHVGVSAMCH
Ga0310912_100330021	3300031941	Soil	GAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTKRGHVGMSALCHCRP
Ga0310912_102685424	3300031941	Soil	AESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGISAL
Ga0310916_107904261	3300031942	Soil	LGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTKSRHAGMSALCQ
Ga0310913_104529651	3300031945	Soil	GAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGISAL
Ga0310910_100721003	3300031946	Soil	KGLGAESEEKREPVSDIDTGVVVSLKVLDPDGLDPDGRLEKRTKSRHHGMPA
Ga0310910_101685201	3300031946	Soil	GLGAESEEKREPVSNIDTAVVVSLKVLDPDGRLEKRTKRRHVGMSALCQKRTHAVQQTG
Ga0310910_103119871	3300031946	Soil	KREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGISAL
Ga0306926_102153181	3300031954	Soil	EPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGISAL
Ga0318530_100184333	3300031959	Soil	SEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNCRGSGMSALCQKQTYAVQQF
Ga0306922_105256483	3300032001	Soil	VSNIDTAVVVSLKVLDPDGRLEKRTRRRHVGVSAMCH
Ga0306922_106685331	3300032001	Soil	KGLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTKSRHLGMSALCQNRTHALQ
Ga0318507_101111792	3300032025	Soil	AESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTKSRHLGVSA
Ga0310911_101476151	3300032035	Soil	LGAESEEKREPVSNIDTAVVVSLKVLDPDGRLEKRTRRRHVGVSAMCH
Ga0310911_102432271	3300032035	Soil	EEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSGRLVMSA
Ga0310911_107073482	3300032035	Soil	EEKREPVSDIDTGVVVSLKVLDPDGRLEKRTKSRHLGVSA
Ga0318549_100673951	3300032041	Soil	GLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLDMSALCQQIKTIGS
Ga0318556_102022702	3300032043	Soil	EPVSNIDTAVVVSLKVLDPDGRLEKRTNCRGSGMSALCQKQTYAVQQF
Ga0318532_100094664	3300032051	Soil	EKREPVSNIDTAVVVSLKVLDPDGRLEKRTNCRGSGMSALCQKQTYAVQQF
Ga0318533_101981601	3300032059	Soil	APYKGLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNRRHLAMSALCQKRL
Ga0318533_105334081	3300032059	Soil	AESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTKSRHAGMSALCQ
Ga0318510_103930691	3300032064	Soil	AVVVSLKVLDPDGRLEKRTNSRHLDMSALCQQIKTIGS
Ga0318514_100198191	3300032066	Soil	GAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNRRHLAMSALCQKRL
Ga0306924_104407881	3300032076	Soil	ESEEKREPVSNIDTAVVVSLKVLDPDGRLEKRTNSRHLDMSALCQQIKTIGS
Ga0306924_105083651	3300032076	Soil	EEKREPVSNIDTAVVVSLKVLDPDGRLEKRTNSRHVGMSALCQKRTHAVQQTG
Ga0306924_126381881	3300032076	Soil	ESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTKSRHLGVSA
Ga0306920_1001928111	3300032261	Soil	PYKGLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNRRHLAMSALCQKRL
Ga0306920_1004378381	3300032261	Soil	GLGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTKSRHLGVSA
Ga0306920_1006949962	3300032261	Soil	EPVSDIDTGVVVSLKVLDPDGRLEKRTNCRSLDISALCHKRL
Ga0306920_1016994013	3300032261	Soil	ESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTTSRRRGMSALCQ
Ga0310914_101512341	3300033289	Soil	LGAESEEKREPVSNIDTAVVVSLKVLDPDGRLEKRTNSRHLDMSALCQQIKTIGS
Ga0310914_106428381	3300033289	Soil	LGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRHLGISAL
Ga0318519_100305913	3300033290	Soil	LGAESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNCRGSGMSALCQKQTYAVQQF
Ga0318519_104874011	3300033290	Soil	AESEEKREPVSDIDTGVVVSLKVLDPDGRLEKRTNSRWLGLSALCSKADIRGWPL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F083545

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences