NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F083441

Metagenome / Metatranscriptome Family F083441

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F083441
Family Type Metagenome / Metatranscriptome
Number of Sequences 113
Average Sequence Length 101 residues
Representative Sequence MDLRSWPKKWNNASLRQIARLPEDSPSRTWPLLGMLALGLVAGAALGGYAVSQRSQMKRLATYAHRMRDELATIGKLEAEPEAVGSVPRSNHRRKATSEV
Number of Associated Samples 81
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 7.96 %
% of genes near scaffold ends (potentially truncated) 15.04 %
% of genes from short scaffolds (< 2000 bps) 78.76 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil
(25.664 % of family members)
Environment Ontology (ENVO) Unclassified
(18.584 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(61.947 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 49.22%    β-sheet: 0.00%    Coil/Unstructured: 50.78%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.20
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 113 Family Scaffolds
PF04226Transgly_assoc 27.43
PF02325YGGT 24.78
PF04203Sortase 6.19
PF06305LapA_dom 5.31
PF00486Trans_reg_C 2.65
PF11999Ice_binding 2.65
PF00072Response_reg 0.88
PF00106adh_short 0.88
PF06224HTH_42 0.88
PF01569PAP2 0.88
PF07878RHH_5 0.88
PF01243Putative_PNPOx 0.88
PF01402RHH_1 0.88
PF04480DUF559 0.88
PF13090PP_kinase_C 0.88
PF01850PIN 0.88
PF02518HATPase_c 0.88
PF07366SnoaL 0.88
PF030614HBT 0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 113 Family Scaffolds
COG2261Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein familyGeneral function prediction only [R] 27.43
COG0762Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT familyPosttranslational modification, protein turnover, chaperones [O] 24.78
COG3764Sortase (surface protein transpeptidase)Cell wall/membrane/envelope biogenesis [M] 6.19
COG3771Lipopolysaccharide assembly protein YciS/LapA, DUF1049 familyCell wall/membrane/envelope biogenesis [M] 5.31
COG3214DNA glycosylase YcaQ, repair of DNA interstrand crosslinksReplication, recombination and repair [L] 0.88

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2088090004|P1_DRAFT_NODE_257300_len_1596_cov_13_039474All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1646Open in IMG/M
2088090008|P3_DRAFT_NODE_147091_len_1759_cov_11_167709All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1809Open in IMG/M
2088090008|P3_DRAFT_NODE_290961_len_826_cov_14_486683All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium876Open in IMG/M
2124908041|P3_CLC_ConsensusfromContig135906All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium631Open in IMG/M
3300001086|JGI12709J13192_1007829All Organisms → cellular organisms → Bacteria944Open in IMG/M
3300001089|JGI12683J13190_1002705All Organisms → cellular organisms → Bacteria2357Open in IMG/M
3300001089|JGI12683J13190_1010456All Organisms → cellular organisms → Bacteria872Open in IMG/M
3300001359|A3035W6_1051771All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium541Open in IMG/M
3300001361|A30PFW6_1041720All Organisms → cellular organisms → Bacteria1640Open in IMG/M
3300001535|A3PFW1_10255856All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium522Open in IMG/M
3300001537|A2065W1_10854985All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1334Open in IMG/M
3300001593|JGI12635J15846_10031047All Organisms → cellular organisms → Bacteria4271Open in IMG/M
3300001593|JGI12635J15846_10476403All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300002025|smpD1_1017587All Organisms → cellular organisms → Bacteria1045Open in IMG/M
3300002245|JGIcombinedJ26739_100070817All Organisms → cellular organisms → Bacteria3216Open in IMG/M
3300004139|Ga0058897_11017418All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium625Open in IMG/M
3300004631|Ga0058899_12252107All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium937Open in IMG/M
3300005445|Ga0070708_100532103All Organisms → cellular organisms → Bacteria1109Open in IMG/M
3300005467|Ga0070706_100119336All Organisms → cellular organisms → Bacteria → Proteobacteria2458Open in IMG/M
3300005468|Ga0070707_100370489All Organisms → cellular organisms → Bacteria1391Open in IMG/M
3300005468|Ga0070707_100596921All Organisms → cellular organisms → Bacteria1067Open in IMG/M
3300005468|Ga0070707_100661626All Organisms → cellular organisms → Bacteria1007Open in IMG/M
3300005468|Ga0070707_101140914All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300005471|Ga0070698_100310991All Organisms → cellular organisms → Bacteria1506Open in IMG/M
3300005471|Ga0070698_101466326All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium633Open in IMG/M
3300005536|Ga0070697_100278151All Organisms → cellular organisms → Bacteria1436Open in IMG/M
3300005536|Ga0070697_101178040All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium683Open in IMG/M
3300005536|Ga0070697_101277193All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300005537|Ga0070730_10749712All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium617Open in IMG/M
3300005549|Ga0070704_101316756All Organisms → cellular organisms → Bacteria661Open in IMG/M
3300005938|Ga0066795_10219910All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium564Open in IMG/M
3300005994|Ga0066789_10040843All Organisms → cellular organisms → Bacteria2046Open in IMG/M
3300006047|Ga0075024_100755909All Organisms → cellular organisms → Bacteria539Open in IMG/M
3300006050|Ga0075028_100270792All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium938Open in IMG/M
3300006055|Ga0097691_1066173All Organisms → cellular organisms → Bacteria1173Open in IMG/M
3300006057|Ga0075026_100292015All Organisms → cellular organisms → Bacteria887Open in IMG/M
3300006354|Ga0075021_10545749All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium737Open in IMG/M
3300006638|Ga0075522_10176558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1094Open in IMG/M
3300007822|Ga0104325_114925All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1339Open in IMG/M
3300009029|Ga0066793_10025844All Organisms → cellular organisms → Bacteria3235Open in IMG/M
3300009029|Ga0066793_10133265All Organisms → cellular organisms → Bacteria1449Open in IMG/M
3300009029|Ga0066793_10351363All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium849Open in IMG/M
3300009174|Ga0105241_11937976All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium578Open in IMG/M
3300011120|Ga0150983_11296081All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium765Open in IMG/M
3300011120|Ga0150983_12725716All Organisms → cellular organisms → Bacteria1052Open in IMG/M
3300011120|Ga0150983_13654176All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium706Open in IMG/M
3300011120|Ga0150983_13686058All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium664Open in IMG/M
3300011120|Ga0150983_14730019All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium712Open in IMG/M
3300011992|Ga0120146_1069079All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium573Open in IMG/M
3300011996|Ga0120156_1002114All Organisms → cellular organisms → Bacteria5711Open in IMG/M
3300011998|Ga0120114_1001166All Organisms → cellular organisms → Bacteria8303Open in IMG/M
3300012927|Ga0137416_10297072All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1337Open in IMG/M
3300014827|Ga0120171_1066004All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1021Open in IMG/M
3300018071|Ga0184618_10091751All Organisms → cellular organisms → Bacteria1178Open in IMG/M
3300019879|Ga0193723_1058627All Organisms → cellular organisms → Bacteria1123Open in IMG/M
3300019883|Ga0193725_1120803All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium597Open in IMG/M
3300019888|Ga0193751_1042206All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2029Open in IMG/M
3300019999|Ga0193718_1013453All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1806Open in IMG/M
3300020006|Ga0193735_1085435All Organisms → cellular organisms → Bacteria897Open in IMG/M
3300020581|Ga0210399_10124544All Organisms → cellular organisms → Bacteria2119Open in IMG/M
3300021046|Ga0215015_10136960All Organisms → cellular organisms → Bacteria3478Open in IMG/M
3300021046|Ga0215015_10552160All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium609Open in IMG/M
3300021046|Ga0215015_10700781All Organisms → cellular organisms → Bacteria → Proteobacteria1109Open in IMG/M
3300021088|Ga0210404_10902594All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium505Open in IMG/M
3300021178|Ga0210408_11073868All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium620Open in IMG/M
3300021432|Ga0210384_10005456All Organisms → cellular organisms → Bacteria13818Open in IMG/M
3300021432|Ga0210384_10010180All Organisms → cellular organisms → Bacteria9618Open in IMG/M
3300024290|Ga0247667_1084199All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium585Open in IMG/M
3300025509|Ga0208848_1000095All Organisms → cellular organisms → Bacteria16768Open in IMG/M
3300025544|Ga0208078_1123330All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium515Open in IMG/M
3300025579|Ga0207927_1054831All Organisms → cellular organisms → Bacteria1015Open in IMG/M
3300025619|Ga0207926_1103288All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium691Open in IMG/M
3300025910|Ga0207684_10004509All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium13091Open in IMG/M
3300025910|Ga0207684_10091344All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2595Open in IMG/M
3300025922|Ga0207646_10355920All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1323Open in IMG/M
3300025922|Ga0207646_10804177All Organisms → cellular organisms → Bacteria837Open in IMG/M
3300026271|Ga0209880_1040511All Organisms → cellular organisms → Bacteria1050Open in IMG/M
3300026291|Ga0209890_10045571All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1635Open in IMG/M
3300027565|Ga0209219_1110470All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium674Open in IMG/M
3300027587|Ga0209220_1000492All Organisms → cellular organisms → Bacteria13203Open in IMG/M
3300027587|Ga0209220_1008210All Organisms → cellular organisms → Bacteria2783Open in IMG/M
3300027587|Ga0209220_1038501All Organisms → cellular organisms → Bacteria1280Open in IMG/M
3300027587|Ga0209220_1084883All Organisms → cellular organisms → Bacteria835Open in IMG/M
3300027645|Ga0209117_1000214All Organisms → cellular organisms → Bacteria33900Open in IMG/M
3300027645|Ga0209117_1000616All Organisms → cellular organisms → Bacteria13945Open in IMG/M
3300027651|Ga0209217_1040438All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1434Open in IMG/M
3300027651|Ga0209217_1132455All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium698Open in IMG/M
3300027667|Ga0209009_1100887All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium732Open in IMG/M
3300027667|Ga0209009_1123249All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium658Open in IMG/M
3300027674|Ga0209118_1013960All Organisms → cellular organisms → Bacteria2668Open in IMG/M
3300027678|Ga0209011_1000325All Organisms → cellular organisms → Bacteria18955Open in IMG/M
3300027678|Ga0209011_1000348All Organisms → cellular organisms → Bacteria18281Open in IMG/M
3300027678|Ga0209011_1050448All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1275Open in IMG/M
3300027910|Ga0209583_10066618All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1310Open in IMG/M
3300028047|Ga0209526_10017550All Organisms → cellular organisms → Bacteria4974Open in IMG/M
3300028536|Ga0137415_10205201All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1789Open in IMG/M
3300028792|Ga0307504_10012610All Organisms → cellular organisms → Bacteria1948Open in IMG/M
3300028803|Ga0307281_10377701All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium539Open in IMG/M
3300028807|Ga0307305_10310766All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium717Open in IMG/M
3300029636|Ga0222749_10152403All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1127Open in IMG/M
3300030803|Ga0074037_1002665All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium910Open in IMG/M
3300030997|Ga0073997_12155018All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium622Open in IMG/M
3300031000|Ga0074035_10923724All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium670Open in IMG/M
3300031720|Ga0307469_10110164All Organisms → cellular organisms → Bacteria1961Open in IMG/M
3300031720|Ga0307469_12529516All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium502Open in IMG/M
3300031962|Ga0307479_10534036All Organisms → cellular organisms → Bacteria1156Open in IMG/M
3300032174|Ga0307470_10468793All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium910Open in IMG/M
3300032180|Ga0307471_100408592All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1487Open in IMG/M
3300032180|Ga0307471_101486005All Organisms → cellular organisms → Bacteria836Open in IMG/M
3300032180|Ga0307471_101883363All Organisms → cellular organisms → Bacteria748Open in IMG/M
3300032756|Ga0315742_11385103All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium741Open in IMG/M
3300032756|Ga0315742_11960747All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium650Open in IMG/M
3300034643|Ga0370545_031646All Organisms → cellular organisms → Bacteria954Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil25.66%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere14.16%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil11.50%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.85%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost7.08%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil6.19%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil5.31%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds4.42%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil3.54%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil3.54%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil2.65%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.77%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.77%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.89%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.89%
Permafrost And Active Layer SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost And Active Layer Soil0.89%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.89%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090004Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1EnvironmentalOpen in IMG/M
2088090008Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3EnvironmentalOpen in IMG/M
2124908041Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3EnvironmentalOpen in IMG/M
3300001086Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3EnvironmentalOpen in IMG/M
3300001089Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3EnvironmentalOpen in IMG/M
3300001359Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-35cm)- 6 month illuminaEnvironmentalOpen in IMG/M
3300001361Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-PF)- 6 month illuminaEnvironmentalOpen in IMG/M
3300001535Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001537Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002025Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_D1EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004139Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004631Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005938Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191EnvironmentalOpen in IMG/M
3300005994Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049EnvironmentalOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006055Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012EnvironmentalOpen in IMG/M
3300006057Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012EnvironmentalOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300006638Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-AEnvironmentalOpen in IMG/M
3300007822Permafrost core soil microbial communities from Svalbard, Norway - sample 2-8-2 SoapdenovoEnvironmentalOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011992Permafrost microbial communities from Nunavut, Canada - A23_65cm_12MEnvironmentalOpen in IMG/M
3300011996Permafrost microbial communities from Nunavut, Canada - A39_65cm_12MEnvironmentalOpen in IMG/M
3300011998Permafrost microbial communities from Nunavut, Canada - A30_35cm_6MEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014827Permafrost microbial communities from Nunavut, Canada - A3_80cm_18MEnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300019879Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2EnvironmentalOpen in IMG/M
3300019883Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2EnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300019999Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1EnvironmentalOpen in IMG/M
3300020006Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300024290Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08EnvironmentalOpen in IMG/M
3300025509Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025544Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025579Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025619Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026271Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191 (SPAdes)EnvironmentalOpen in IMG/M
3300026291Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)EnvironmentalOpen in IMG/M
3300027565Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027587Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027645Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027651Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027667Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027678Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028803Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030803Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C3 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030997Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031000Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C1 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032756Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined AssemblyEnvironmentalOpen in IMG/M
3300034643Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
P1_DRAFT_010194802088090004SoilVAAXXXXKWNDAELPQIPNFPGESSRPWPLFGMLALGLVAGAALGGYAVSQRSQMKRLAAAAHRMGDELAEMGRLDIKPSPVVTTHRSNHRRKAASEV
P3_DRAFT_007997902088090008SoilMDLRSWRNKWNDAELPQIPNFPGESSRPWPLFGMLALGLVAGAALGGYAVSQRSQMKRLAAAAHRMGDELADMGRLDIKPSPVVTTHRSNHRRKAASEV
P3_DRAFT_005831302088090008SoilMDLRSWPKKWNDAGLRQIVTLPEDSPSSPWPMLGMLAVGLVAGAALGGYAASQRSQMRRLARHAHRMGDELAAMGSEAVRPVSDVPSTRSNHRRKATSEV
P3_CLC_025887402124908041SoilPDPDHHRPSRHQAGVVVMDLRSWRNKWNDAELPQIPNFPGESSRPWPLFGMLALGLVAGAALGGYAVSQRSQMKRLAAAAHRMGDELAEMGRLDIKPSPVVTTHRSNHRRKAASEV
JGI12709J13192_100782923300001086Forest SoilMDLKSWRNRWNEASLPQIPVMPFESQSRPWPLLGMLALGLVAGAAIGGYAMSQRSQMKRLAGYAHRMGDGMNSMGEFNEEPVVVTTHRANHRSKATSEARNK*
JGI12683J13190_100270523300001089Forest SoilMDFRSWPKKWNDASSRWNDTSLKQFANLPEYPTSRPWPLLGMLAVGLVAGVAIGGYTVSQRSHMRRLAGYAHRVGDELADMATDEAERPLTNTRSNHRRKAASEV*
JGI12683J13190_101045623300001089Forest SoilMDIRSWPKKWNDASVRQFATLPEFSPSPRPWPMLGMLALGLVAGVAIGGYTVSQRSHMRRLAGYAHRMGDELADLSTDEAERPVSSARSNHRRKTAVGV*
A3035W6_105177123300001359PermafrostRHQTGDIVMNLRSWPKKWNDVSERWNDASLRQIATLPEYPRSRPWPLLGMLAMGLVAGAAIGGYAMTQRSQMKRLATYAHRMGDELAAMGMPEAVKPVVVVMSPRSTHRRKAASEV*
A30PFW6_104172043300001361PermafrostMDIRSWPKKWNDASLRQFATLPEFSPSPRPWPMLGMLALGVVAGVAIGGYAVSQRSQMKRLAAYAHRMGDELADMATDETERPLTATRSNHRRKAAAEV*
A3PFW1_1025585613300001535PermafrostMNLRSWPKKWNDVSERWNDASLRQIATLPEYPRSRPWPLLGMLAMGLVAGAAIGGYAMTQRSQMKRLATYAHRMGDELAAMGMPEAVKPVVVVMSPRSTHRRKAASEV*
A2065W1_1085498513300001537PermafrostMNLRSWPKKWNDVSERWNDASLRQIATLPEYPRSRPWPLLGILAVGLVAGAAIGGYAMTQRSQMKRLATYAHRMGDELAAMGMPEAVKPVVVVMSPRSTHRRKAASEV*
JGI12635J15846_1003104773300001593Forest SoilMDIRSWPKKWNDASLRQFATLPEFSPSPRPWPMLGMLALGLVAGVAIGGYTVSQRSHMRRLAGYAHRMGDELADLSTDEAERPVSSARSNHRRKTAVGV*
JGI12635J15846_1047640323300001593Forest SoilVIDLRSWPKKWNDASLRQIATLPEDSPSRPWPMLGMLTLGLVAGAAIGGYAVSQRSNMRRLGMHAHRMGDELEAMGMDDPVAATSSRSNHRRKATSEV*
smpD1_101758723300002025Permafrost And Active Layer SoilMDIRSWPKKWNDASLRQFATLPEFSPSPRPWPLLGMLALGVVAGVAIGGYAVSQRSQMKRLAAYAHRMGDELADMATDETERPLTATRSNHRRKAAAEV*
JGIcombinedJ26739_10007081743300002245Forest SoilVIDLRSWPKKWNDASLRQIANLPEYSQSRRWPLLGVLALGFVVGAAFGGYAVSQRSQMKRLAMYAHRMGDELSAMGTAEGLEAERGVTITPSNHRRKAPAEV*
Ga0058897_1101741813300004139Forest SoilMLPEFSPSRPWPLFGMLAVGLVAGAALGGYAMSQRARMKQLGMYAHRMGDELARMDGDGEVDRPVTVVSPRSNHRRKTTSRL*
Ga0058899_1225210723300004631Forest SoilMDLRSWPKRWNDASWRNAATLPEFSPSRPWPLFGMLAIGLIAGAALGGYAVTQRSRMKKLSMYAHRMGDELAGLDGEDDEPVAVVTSRSNHRRKTTSRV*
Ga0070708_10053210333300005445Corn, Switchgrass And Miscanthus RhizosphereMDLRSWPKKWNSAALRRIATLPENSPSRTWPLLGMLALGLVAGAALGGYAVSQRSQMKRLATYAHRVRDELAAIGEPEVKSVAAVTAPRSNHRRKATSEV*
Ga0070706_10011933653300005467Corn, Switchgrass And Miscanthus RhizosphereMWNNAALPQIPSLPGESPSRTWPLLGMLTLGLVAGAALGGYEVSQRSQMRRLAKYAYRLRDELAGMPESEGEPLADARPPRSNHRRKATSEV*
Ga0070707_10037048923300005468Corn, Switchgrass And Miscanthus RhizosphereMDLRSWPKKWNNASLRQIARLPEDSPSRTWPLLGMLALGLVAGAALGGYAVSQRSQMKRLATYAHRMRDELATIGKLEAEPEAVGSVPRSNHRRKATSEV*
Ga0070707_10059692123300005468Corn, Switchgrass And Miscanthus RhizosphereMDFGAWRNRFNDINLRRIAILPEKPQSRAWPLLGMLALGLVAGAALGGYAVSQRAQMKRLATYAKRMRDDLATVGKLEAKPATAGSIPHSNHRRKAMSEV*
Ga0070707_10066162633300005468Corn, Switchgrass And Miscanthus RhizosphereMDLRSWGKKWNEAPMGRVVTMPENRPARVWPLLGMLALGLVAGAGLGGYLVSQRSQMKRLARYAHRMGDELAVLGKAEAEPIAVGTTPRSNHRRKAASEV*
Ga0070707_10114091423300005468Corn, Switchgrass And Miscanthus RhizosphereMDLRSWPKKWNNAALRRIATLPENSPSRTWPLLGMLALGLVAGAALGGYAVSQRSQMKRLATYAHRVRDELAAIGEPEVKSVAAVTAPRSNHRRKATSEV*
Ga0070698_10031099143300005471Corn, Switchgrass And Miscanthus RhizosphereMDLRSWPMKWNNAALRRIATLPENSPSRTWPLLGMLALGLVAGAALGGYAVSQRSQMKRLATYAHRVRDELAAIGEPEVKSVAAVTAPRSNHRRKATSEV*
Ga0070698_10146632623300005471Corn, Switchgrass And Miscanthus RhizosphereVMDLRSWPKKWNNASLRQIARLPEDSPSRTWPLLGMLALGLVAGAALGGYAVSQRSQMKRLATYAHRMRDELATIGKLEAEPEAVGSVPRSNHRRKATSEV*
Ga0070697_10027815133300005536Corn, Switchgrass And Miscanthus RhizosphereMDLRSLGRNWNDAARKWNDASLRQIATMPEYSPSRPWPMFGMLALGLVAGAAIGGYAVSQRSHMKRLAGYVHRMGDELAAAGDVDGEPVAVTTHRLNHRRKATSE
Ga0070697_10117804033300005536Corn, Switchgrass And Miscanthus RhizosphereDAARKWNDASLRQIATMPEYSPSRPWPLFGMLALGLVAGVAIGGYAVSQRSQMKRLAGYAHRMGDGLAAAGEPEDEDVAVTTHRSNHRRKATSEV*
Ga0070697_10127719323300005536Corn, Switchgrass And Miscanthus RhizosphereVIDLRSWPKKWNDAGLRQIVTMPEGSQSSPWPLLGMLAVGLVAGAALGGYAVSQRTQMRRLSTYAHRVGDELASMGGVEANEPAATNSNISNHRRKAPSAV*
Ga0070730_1074971223300005537Surface SoilMDLRSWGKKWNDAPTGRFVTLPENRPAQAWPLLAMLALGLVAGAGFGGYVVSQRAHMKRLAQYAHRVGDELAVLAQPDAEPAAAATSPRSNHRRKAASEV*
Ga0070704_10131675623300005549Corn, Switchgrass And Miscanthus RhizosphereVIDLRSWPKKWNDAGLRQIVTMPEGSQSSPWPLLGMLAVGLVAGAALGGYAVSQRTQMRRLSTYAHRVGDELASMGGVEANEPAATNSNLSNHRRKAPSAV*
Ga0066795_1021991023300005938SoilPQIPNFPGESSRPWPLFGMLALGLVAGAALGGYAVSQRTQMRRLAAAAHRMGDELADMGSYEADKPVPVVTTHRSNHRRKAASEV*
Ga0066789_1004084333300005994SoilMDIRSWRNKWNDAELPQIPNFPGESSSRPWPLFGMLALGLVAGAALGGYAVSQRTQMRRLAAAAHRMGDELADMASYEADKPVPVVTTHRSNHRRKAASEV*
Ga0075024_10075590923300006047WatershedsMDLRDLMSWPKKFDAASLRHLARLPEGSPSRTWPMLGMLALGLVAGAALGGYAVSQRSQMRRLAKYAHRMGDEMAARGKDDDVKTVAVATTTRSNHRRKAASGV*
Ga0075028_10027079213300006050WatershedsMDITSWPKKWNDASLRQIATLPEFSRSRPWPMLGMLAVGLVAGAAIGGYAVSRQTQMKKLATYAHRMGDELAAMGADEVIKPVDRVMAGRSNHRRKAASEV*
Ga0097691_106617323300006055Arctic Peat SoilMDIRSWRNKWNDAELPQIPNFPGESSSRPWPLLGMLALGLVAGAALGGYAVSQRTQMRRLAAAAHRMGDELTDMASYEADKPVPVVTTHRSNHRRKAASEV*
Ga0075026_10029201523300006057WatershedsMDLRSWPKRWNDASWRNAATLPEFSPSRPWPLFGMLALGLVAGAALGGYAVTQRSRMKKLSMYAHRMGDELAGMDGEVDEPVAVVTSRSNHRRKTTSRV*
Ga0075021_1054574913300006354WatershedsWNDASLRQIATLPEFPQSRPWPLLGMLALGLVAGAALGGYAVSQRSQMKRLSSYAHRMGDELAAMSSDDDVKPVVASSRSNHRRKAAAEV*
Ga0075522_1017655833300006638Arctic Peat SoilVIDLRSWPKRWNDTALRQIVTLPEDSPSSPWPMLGMLAVGLVIGAALGGYAASQRSQMRRLAMHAHRMGDELAAMGSEAVRPVAVVPSTRSNHRRKATSEV*
Ga0104325_11492533300007822SoilMDLRSWPKKWNDAGLRQIVTLPEDSPSSPWPMLGMLAVGLVAGAALGGYAASQRSQMRRLAMHAHRMGDELAAMGSEAVRPVSDVPSTRSNHRRKATSEV*
Ga0066793_1002584413300009029Prmafrost SoilMDIRSWRNKWNDAELPQIPNFPGESSSRPWPLFGMLALGLVAGAALGGYAVSQRTQMRRLAAAAHRMGDELTDMASYEADKPVPVVTTHRSNHRRKAASEV*
Ga0066793_1013326543300009029Prmafrost SoilMDLRSWPKKWNDAGLRQIVTLPEDSPSSPWPMLGMLAVGLVAGAALGGYAASQRSQMRRLARHAHRMGDELAAMGSEAVRPVSDVPSTRSNHRRKATSEV*
Ga0066793_1035136313300009029Prmafrost SoilMDVRSWPKRWNDTSLRDIATLPEYPTSRPWPLLGMLAFGLVAGAALGGYAVSQRAQMKRLAKHAHRMGDELAAMGRVEAVKPAAVTSNRSNHRRKAASEV*
Ga0105241_1193797623300009174Corn RhizosphereLIDLRSWPKRWNEAGLRDIAILPENSGSRPWPLIGMFAIGLVAGAAIGGFAVSQRHEMKRLAKYADRMGDDLAVMAQNELKDPSNPSPNHRRKAISEV*
Ga0150983_1129608113300011120Forest SoilVDLTSWPKKWNDASLRQIATLPEFSRSRPWPLVGMLALGVVAGAAIGTYATSRRSLRSRLARYVHRMGDELAGTDSSEPLKTVATTTASHSNHRRKAAVKA*
Ga0150983_1272571623300011120Forest SoilMDLRSWPKRWNDASWRNAATLPEFSPSRPWPLFGMLALGLVAGAALGGYAVTQRSRMKKLSMYAHRMGDELAGMDGEDDHPVAVVTSRSNHRRKTTSRV*
Ga0150983_1365417613300011120Forest SoilMDLRSWRNKWNDAELPQIPHFPYESSSRPWSLFGMLAIGLVAGAALGGYVLSQRAQMRRLAGAAHRMGDELSAAGGDEGDPVVTTHRSNHRRKATSEV*
Ga0150983_1368605813300011120Forest SoilVIDIRSWPKKLNDAPWRQIARLPENSSSSRTWPLLGMLALGLVAGAALGGYAVSQRSQMKRLAMYGHRLSDELAAIGKDEADKPVAVATSHRS
Ga0150983_1473001923300011120Forest SoilVIDLRSWPKKWNDASWRDVAMLPEFSPSRPWPLFGMLAVGLVAGAALGGYAMSQRARMKQLGMYAHRMGDELARMDGDGEVDRPVTVVSPRSNHRRKTTSRL*
Ga0120146_106907913300011992PermafrostMDIRSWPKKWNDASLRQFATIPEFSPSPRPWPMLGMLALGLVAGVAIGGYTVSQRSHMKRLAGYAHRMGDELADMSTDEVERPVTAPRSNHRRKAAAED*
Ga0120156_100211473300011996PermafrostMDIRSWPKKWNDASLRQFATIPEFSPSPRPWPMLGMLALGLVAGVAIGGYTVSQRSHMKRLAGYAHRMGDELADMSTDEVERPVTAPRSNHRRKAAAEV*
Ga0120114_100116683300011998PermafrostMDIRSWPKKWNDASLRQFATIPEFSPSPRPWPMLGMLALGVVAGVAIGGYAVSQRSQMKRLAAYAHRMGDELADMATDETERPLTATRSNHRRKAAAEV*
Ga0137416_1029707223300012927Vadose Zone SoilMDLAAWRNRFGDINLRRIAILPEKPQSRAWPLLGMLALGLVTGAALGGYAISQRSQMKRLSTYAHRMRDELATMGKVEAEPDAAGSVPRSNHRRKAASEV*
Ga0120171_106600423300014827PermafrostMDIRSWPKKWNDASQRWNDASLRQIATLPEYPRSRPWPLLGILAVGLVAGAAIGGYAMTQRSQMKRLATYAHRMGDELAAMGMPEAVKPVVVVMSPRSTHRRKAASEV*
Ga0184618_1009175123300018071Groundwater SedimentMDLRSLGRNWNDAARKWNDASLRQIATLPEYSPSRPWPMFGMLALGLVAGVAIGGYAVSQRSQMKRLAGYAHRMGDELAAAGEVEDESVAVTTHRSNHRRKATSEV
Ga0193723_105862723300019879SoilLIDLRSWPKRWNESGLRDIAILPENSGSRPWPLIGMLAIGLVAGAALGGYAVSQRNQMQRLARQAHRMGDELAALGSEESPEPVTSRSNHRRKATSEV
Ga0193725_112080323300019883SoilLIDLRSWPKKWNEAGLRDIAILPENSGSRPWPLIGMLAIGLVAGVAFGGYAVSQRNQMKRLAKHAHRMGDELAAMASEAATEPMTPRSNHRRKATSEV
Ga0193751_104220633300019888SoilMDLGAWRNRFNDINLRRIAILPEKPQSRAWPLLGMLALGLVAGAALGGYAISQRSQMKRLSTYAHRMRDELATRGNVEATPEVAGSVPRSNHRRKATSEV
Ga0193718_101345343300019999SoilVIDLRSLPKRWNETGLRDIAILPEHSTSRPWPLIGMLAIGLIAGAALGGYAVSQRNEMKRLARHAHRVGDDLAVMARNEMTDPSTPSPNHRRKATSEV
Ga0193735_108543523300020006SoilMDLRTLGRNWNDAARKWNDASLRQIATLPEYSPSRPWPMFGMLALGLVAGVAIGGYAVSQRSQMKRLAGYAHRMGDELAAAGEVEDESVAVTTHRSNHRRKATSEV
Ga0210399_1012454423300020581SoilVIDLRSWPKKWNDAGLRDIAILPENSPTRAWPLLGMLAIGLFAGAALGGYAVSQRAQMRRLAKHAHRMGDELAEMGKADAEPAATSSRSNHRRKATSEV
Ga0215015_1013696043300021046SoilMDLRAWGKKWNDASLRRIVTLPENPTPRVWPLLGMLALGLLAGAGLGGYIVSQRPQMKRLARYAHRMGDELATYGKPEAEPLAVVATSPRSNHRRKATLEV
Ga0215015_1055216013300021046SoilMDLRSWGKKWNDASLGRVVTLPENPPSRVWPMLAMLALGLVAGTSLGGYVVSQRSQMKRLSRYAHRMGDELAVLGKPEAEPTVVVTSTRSNHRRKASSEF
Ga0215015_1070078113300021046SoilWGKKWNDASLGRVVTLPENPPSRVWPMLAMLALGLVAGTSLGGYFVSQRSQMKRLSRYAHRMGDELAVLGKPEPEPTVVVTSTRSNHRRKATSEV
Ga0210404_1090259413300021088SoilMDLRSWPKRWNDASWRNAATLPEFSPSRPWPLFGMLAVGLVAGAALGGYAMTQRARMKQLAMYAHRMGDELAGMDGEADEPVAVVTSRSNHRRKTTSRV
Ga0210408_1107386823300021178SoilGNVVMDLRSWPKRWNDASWRNAATLPEFSPSRPWPLFGMLAIGLVAGAALGGYAVTQRSRMKKLSMYAHRMGDELAGMDGEDDEPVAVVTSRSNHRRKSTSRV
Ga0210384_1000545683300021432SoilMDLRSWPKRWNDASWRNAATLPEFSPSRPWPLFGMLAIGLVAGAALGGYAVTQRSRMKKLSMYAHRMGDELAGLDGEDDEPVAVVTSRSNHRRKTTSRV
Ga0210384_1001018083300021432SoilMDLRSWPKRWNDASWRNAATLPEFSPSRPWPLFGMLAIGLVAGAALGGYAVTQRSRMKKLSMYAHRMGDELAGMDGEDDEPVAVVTSRSNHRRKSTSRV
Ga0247667_108419913300024290SoilLKDLKSWRNRWNEAALPQIPVMPFESRSHPWPLFGMLVVGLVAGAALGGYAVSQRSQLNRLALHARRMRDEMTNMGDVDGEPVGVTTHRVNHRRKATSEV
Ga0208848_1000095243300025509Arctic Peat SoilMDIRSWRNKWNDAELPQIPNFPGESSSRPWPLFGMLALGLVAGAALGGYAVSQRTQMRRLAAAAHRMGDELADMGSYESDKPVPVVTTHRSNHRRKAASEV
Ga0208078_112333013300025544Arctic Peat SoilMDLRSWPKKWNDAGLRQIVTLPEDSPSSPWPMLGMLAVGLVAGAALGGYAASQRSQMRRLARHAHRMGDELAAMGSESVRPVSDVPSTRSNHRRKATSEV
Ga0207927_105483123300025579Arctic Peat SoilVIDLRSWPKRWNDTALRQIVTLPEDSPSSPWPMLGMLAVGLVIGAALGGYAASQRSQMRRLAMHAHRMGDELAAMGSEAVRPVAVVPSTRSNHRRKATSEV
Ga0207926_110328813300025619Arctic Peat SoilMDIRSWRNKWNDAELPQIPNFPGESSSRPWPLLGMLALGLVAGAALGGYAVSQRTQMRRLAAAAHRMGDELTDMASYEADKPEPVVTTH
Ga0207684_1000450923300025910Corn, Switchgrass And Miscanthus RhizosphereMDLRSWPMKWNNAALRRIATLPENSPSRTWPLLGMLALGLVAGAALGGYAVSQRSQMKRLATYAHRVRDELAAIGEPEVKSVAAVTAPRSNHRRKATSEV
Ga0207684_1009134453300025910Corn, Switchgrass And Miscanthus RhizosphereMWNNAALPQIPSLPGESPSRTWPLLGMLTLGLVAGAALGGYEVSQRSQMRRLAKYAYRLRDELAGMPESEGEPLADARPPRSNHRRKATSEV
Ga0207646_1035592023300025922Corn, Switchgrass And Miscanthus RhizosphereMDLRSWRNRLNDVALRRIAILPEKPTSRAWPLLGMLALGLVAGAALGGYAVSQRAQMKRLATYAKRMRDDLATVGKLEAKPATAGSIPHSNHRRKAMSEV
Ga0207646_1080417723300025922Corn, Switchgrass And Miscanthus RhizosphereMDLRSWPKKWNNAALRRIATLPENSPSRTWPLLGMLALGLVAGAALGGYAVSQRSQMKRLATYAHRVRDELAAIGEPEVKSVAAVTAPRSNHRRKATSEV
Ga0209880_104051113300026271SoilMDIRSWRNKWNDAELPQIPNFPGESSSRPWPLFGMLALGLVAGAALGGYAVSQRTQMRRLAAAAHRMGDELADMGSYEADKPVPVVTTHRSNHRRKAASEV
Ga0209890_1004557113300026291SoilMDIRSWRNKWNDAELPQIPNFPGESSSRPWPLFGMLALGLVAGAALGGYAVSQRTQMRRLAAAAHRMGDELADMASYEADKPVPVVTTHRSNHRRKAASEV
Ga0209219_111047023300027565Forest SoilMDLTSWPKKWNDASLRQIATLPEFSRSRPWPLLGMLALGAVAGAALVGYATSRRSLRSRLATYAHRMGDELAGIDSVEPMKTVATATQSHSNHRRKADSEARMGLIV
Ga0209220_1000492173300027587Forest SoilMDLKSWRNRWNEASLPQIPVMPFESQSRPWPLLGMLALGLVAGAAIGGYAMSQRSQMKRLAGYAHRMGDGMNSMGEFNEEPVVVTTHRANHRSKATSEARNK
Ga0209220_100821063300027587Forest SoilVIDLRSWPKKWNDASLRQIATLPEDSPSRPWPMLGMLTLGLVAGAAIGGYAVSQRSNMRRLGMHAHRMGDELEAMGMDDPVAATSSRSNHRRKATSEV
Ga0209220_103850123300027587Forest SoilMDLKSWPKRWNDVSLRDIAKLPEFSPSRPWPLFGMLALGLVAGAAIGGYAVSQRSHIMRLSKYAQQMGDEMAGLDGFEAVEPEPEASTSRSNHRRKTPSRV
Ga0209220_108488333300027587Forest SoilWPKKWNDASLRQFATLPEFSPSPRPWPMLGMLALGLVAGVAIGGYTVSQRSHMRRLAGYAHRMGDELADLSTDEAERPVSSARSNHRRKAAVGV
Ga0209117_1000214263300027645Forest SoilMDIRSWPKKWNDASLRQFATLPEFSPSPRPWPMLGMLALGLVAGVAIGGYTVSQRSHMRRLAGYAHRMGDELADLSTDEAERPVSSARSNHRRKTAVGV
Ga0209117_1000616163300027645Forest SoilMDFTSWPKKWNDASSRWNDASLRQFATLPEYPTSRPWPLFGMLALGLVAGVAIGGYAVSQRSQMRRLAGYAHRMGDELSDIAIEETARPVTTTRSNHRRKAASEV
Ga0209217_104043833300027651Forest SoilMDFTSWPKKWNDASSRWNDASLRQFATLPEYPTSRPWPLFGMLALGLVAGVAIGGYAVSQRSHMRRLAGYAHRMGDELSDIAIEETARPVTTTRSNHRRKAASEV
Ga0209217_113245523300027651Forest SoilMDLRSWGKKWNDASLGRVVTLPESRPSQVWPLLAMLALGLVAGTSLGGYVVSQRSHMKRLARYAHRMGDELAVMGKPEHEPVAVVTHPRSNHRRKAASEV
Ga0209009_110088713300027667Forest SoilVIDLRFWPKKWNDAGLRQLVTLPEDANSSAWPMLGMLAIGLVAGAALGGYAASQRSQMARLAGYAHRIGDELAAMGGVEKINEEIRPTAVTSNRSNHGRKAASAV
Ga0209009_112324923300027667Forest SoilVIDLRSWPKKWNDAALRNIVTLPEGSSPRPWPMLGMLALGLVAGAVIGGYAMSQRSPIKRLALYAHRPSDELDAMDRADTERPDAPVTAPRSNHRRKVDLTV
Ga0209118_101396013300027674Forest SoilMDLKSWPKRWNDASLRDIAKLPEFSPSRPWPLFGMLALGLVAGAAIGGYAVSQRSHIMRLSKYAQQMGDEMAGLDGFEAVEPEPEASTSRSNHRRKTPSRV
Ga0209011_100032543300027678Forest SoilMDFRSWPKKWNDASSRWNDTSLKQFANLPEYPTSRPWPLLGMLAVGLVAGVAIGGYTVSQRSHMRRLAGYAHRVGDELADMATDEAERPLTNTRSNHRRKAASEV
Ga0209011_100034843300027678Forest SoilMDIRSWPKKWNDASVRQFATLPEFSPSPRPWPMLGMLALGLVAGVAIGGYTVSQRSHMRRLAGYAHRMGDELADLSTDEAERPVSSARSNHRRKTAVGV
Ga0209011_105044833300027678Forest SoilMDLRSWRNRWNEASLPQIPVMPFESQSRPWPLFGMLALGLVAGAAIGGYAMSQRAQIKRLAGYAHRMGDGMTSMGEFDEEPVVVTTHRANHRSKTASEARNK
Ga0209583_1006661833300027910WatershedsMDLRSWPKRWNDASWRNAATLPEFSPSRPWPLFGMLALGLVAGAALGGYAVTQRSRMKKLAMYAHRMSDELSGMDGEGDEPIAVVTTRSNHRRKTTSRA
Ga0209526_1001755043300028047Forest SoilVIDLRSWPKKWNDASLRQIANLPEYSQSRRWPLLGVLALGFVVGAAFGGYAVSQRSQMKRLAMYAHRMGDELSAMGTAEGLEAERGVTITPSNHRRKAPAEV
Ga0137415_1020520133300028536Vadose Zone SoilMDLAAWRNRFGDINLRRIAILPEKPQSRAWPLLGMLALGLVTGAALGGYAISQRSQMKRLSTYAHRMRDELATMGKVEAEPDAAGSVPRSNHRRKAASEV
Ga0307504_1001261043300028792SoilMDLRSLGRNWNDAARKWNDASLRQIATMPEYSPSRPWPLFGMLALGLVAGAAIGGYAVTQRSHMKRLAGYAHRLGDELAAAGDVDGEPVAVTTHRSNHRRKATSEV
Ga0307281_1037770123300028803SoilGPRGPDQDHHRTARNQAGFVLMDLKSLGRNWNDAARKWNDASLRQIATMPEYSPSRPWPMFGMLALGLLAGVAIGGYAVSQRSQMKRLAGYAHRMGDELAAAGEPEDESVAVTTHRSNHRRKATSEV
Ga0307305_1031076613300028807SoilRLGPRGPDQDHHRTARNQTGIVLMDLRTLGRNWNDAARKWNDASLRQIATLPEYSPSRPWPMFGMLALGLVAGVAIGGYAVSQRSQMKRLAGYAHRMGDELAAAGEVEDESVAVTTHRSNHRRKATSEV
Ga0222749_1015240313300029636SoilRPDQDHHRAARHQTGNVVMDLRSWPKRWNDASWRNAATLPEFSPSRPWPLFGMLAIGLVAGAALGGYAVTQRSRMKKLSMYAHRMGDELAGMDGEDDEPVAVVTSRSNHRRKSTSRV
Ga0074037_100266523300030803SoilMDLRSWPKRWNDASWRNAATLPEFSPSRPWPLFGMLAVGLVAGAALGGYAMTQRARMKQLAMYAHRMGDELAGMDGAVDEPIAVVTSRSNHRRKTTSRV
Ga0073997_1215501823300030997SoilMDLRSLGRNWNDAARKWNDASLRQIATMPEYSPSRPWPMFGMLALGLVAGLAIGGYAVTQRSQMKRLAGYVHRMGDELAAAGEPEDEHVAVTTHRSNHRRKATSEV
Ga0074035_1092372413300031000SoilMDLRSWPKRWNDASWRNAATLPEFSPSRPWPLFGMLAVGLVAGAALGGYAMTQRARMKQLAMYAHCMGDELAGMDGAVDEPIAVVTSRSNHRRKTTSRV
Ga0307469_1011016443300031720Hardwood Forest SoilVIDLRSWPKKWNDAGLRDIAILPENSRSGPWPLLGMLAIGLVTGAALGGYAVSQRKRMKRLAKQAHRMGDDLAAMRTVEETKSVAVATSPRSNHRRKATSEV
Ga0307469_1252951623300031720Hardwood Forest SoilLIDLRSWPKRWNEAGLRDIAILPENSGSRPWPLIGMLAIGLVAGAALGGYAVSQRNQMKRLAKHAHRMGDELAAMGKGEVIEPMAQRSNHRRKATSEV
Ga0307479_1053403623300031962Hardwood Forest SoilMDLRAWPKKWNNASLRQIARLPEDSPSRTWPLLGMLALGLVAGAALGGYAVSQRSQMKRLATYAHRMRDELATIGKLEAEREAVGSVPRSNHRRKATSEV
Ga0307470_1046879323300032174Hardwood Forest SoilVIDLRSWPKRWNEAGLRDIAILPENSTSRPWPLIGMLAIGLVAGAALGGYAVSQRNEMKRLAKHAHQMGDDLAVMARNELKDPPTPSPNHRRKATSEV
Ga0307471_10040859233300032180Hardwood Forest SoilMMDFRSWPKKWNDASLRQIARLPENSSSRTWPLLGMLALGLVAGAALGGYAVSQRSQMKRLAMYGRRMRDELTDMGKDEAVKPVAVATSRDSNHRRKAASEV
Ga0307471_10148600523300032180Hardwood Forest SoilMDLRSWGKTWNDAAMRRLAILPERPHSHPWPMLGMLAIGLVAGAAIGGYAVSQRSQLKRLSAHAHRVGDELAALGAREAQVTARVTSARSNHRRKAALEV
Ga0307471_10188336323300032180Hardwood Forest SoilLRDIAILPENSGSRPWPLIGMLAIGLVAGAALGGYAVSQRNQMKRLAKHAHRMGDELAAMGKGEVIEPMAQRSNHRRKATSEV
Ga0315742_1138510313300032756Forest SoilMDLRSWPKRWNDASWRGAATLPEFSPSRPWPLFGMLAVGLVAGAALGGYAMSQRARMKQLGMYAHRMRDELAGVDGESDEPVVVVKSDRSNHRRKTTSRV
Ga0315742_1196074713300032756Forest SoilMDLRSWPKRWNDASWRNAATLPEFSPSRPWPLFGMLAVGLVAGAALGGYAMTQRARMKQLAMYAHRMGDELAGMDGEADEPVAVVTSRSNHRRKTTSRI
Ga0370545_031646_369_6893300034643SoilMDLKSLGRNWNDAARKWNDASLRQIATMPEYSPSRPWPMFGMLALGLLAGVAIGGYAVSQRSQMKRLAGYAHRMGDELAAAGEPEDESVAVTTHRSNHRRKATSEV

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.