Metagenome / Metatranscriptome Family F083215

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083215
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	132 residues
Representative Sequence	MSHRTRLQFFLVPLALAVSFTCVQGQGRNAERARAIERADMDRLLLWAVPKDKESESVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDTLDYSSIADMVGKIRGKANDLKDGLSLPESE
Number of Associated Samples	91
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.84 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	86.73 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.717 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (13.274 % of family members)
Environment Ontology (ENVO)	Unclassified (53.097 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (71.681 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 68.03% β-sheet: 0.00% Coil/Unstructured: 31.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13620	CarboxypepD_reg	2.65
PF03331	LpxC	0.88
PF03551	PadR	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0774	UDP-3-O-acyl-N-acetylglucosamine deacetylase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.88
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.88
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.72 %
Unclassified	root	N/A	36.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.72 %
Unclassified	root	N/A	36.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.72 %
Unclassified	root	N/A	36.28 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	61.95 %
Unclassified	root	N/A	36.28 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	56.64 %
Unclassified	root	N/A	36.28 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.88 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	56.64 %
Unclassified	root	N/A	36.28 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %
Chloracidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium	0.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	56.64 %
Unclassified	root	N/A	36.28 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.88 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	0.88 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	56.64 %
Unclassified	root	N/A	36.28 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.88 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.88 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	56.64 %
Unclassified	root	N/A	36.28 %
unclassified Pseudonocardiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae	0.88 %
Spirosomaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae	0.88 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	56.64 %
Unclassified	root	N/A	36.28 %
Pseudonocardiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	0.88 %
Emticicia	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Emticicia	0.88 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	56.64 %
Unclassified	root	N/A	36.28 %
Emticicia oligotrophica	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Emticicia → Emticicia oligotrophica	0.88 %
Pseudonocardiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	0.88 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000953\|JGI11615J12901_11092550	Not Available	608	Open in IMG/M
3300004157\|Ga0062590_102589466	Not Available	539	Open in IMG/M
3300004479\|Ga0062595_102579060	Not Available	509	Open in IMG/M
3300004480\|Ga0062592_101269308	Not Available	693	Open in IMG/M
3300004801\|Ga0058860_10040500	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2021	Open in IMG/M
3300005093\|Ga0062594_100860561	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300005093\|Ga0062594_100868449	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	846	Open in IMG/M
3300005290\|Ga0065712_10169219	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1254	Open in IMG/M
3300005290\|Ga0065712_10742249	Not Available	531	Open in IMG/M
3300005293\|Ga0065715_10446779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	830	Open in IMG/M
3300005331\|Ga0070670_101977010	Not Available	537	Open in IMG/M
3300005332\|Ga0066388_108587146	Not Available	508	Open in IMG/M
3300005344\|Ga0070661_100816771	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
3300005345\|Ga0070692_10377957	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	888	Open in IMG/M
3300005347\|Ga0070668_101148504	Not Available	702	Open in IMG/M
3300005353\|Ga0070669_100809542	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	796	Open in IMG/M
3300005367\|Ga0070667_100112311	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2364	Open in IMG/M
3300005444\|Ga0070694_100478486	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	988	Open in IMG/M
3300005455\|Ga0070663_101118466	Not Available	689	Open in IMG/M
3300005456\|Ga0070678_100165269	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1797	Open in IMG/M
3300005530\|Ga0070679_101617668	Not Available	595	Open in IMG/M
3300005543\|Ga0070672_102088621	Not Available	510	Open in IMG/M
3300005546\|Ga0070696_101668407	Not Available	549	Open in IMG/M
3300005547\|Ga0070693_100564512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	817	Open in IMG/M
3300005547\|Ga0070693_101188617	Not Available	585	Open in IMG/M
3300005564\|Ga0070664_101073164	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300005577\|Ga0068857_100101821	All Organisms → cellular organisms → Bacteria → Acidobacteria	2577	Open in IMG/M
3300005578\|Ga0068854_102065103	Not Available	526	Open in IMG/M
3300005616\|Ga0068852_100880687	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	912	Open in IMG/M
3300005617\|Ga0068859_100338143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1599	Open in IMG/M
3300005617\|Ga0068859_101138393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859	Open in IMG/M
3300005841\|Ga0068863_102086151	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Emticicia → Emticicia oligotrophica	577	Open in IMG/M
3300005842\|Ga0068858_100676554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1003	Open in IMG/M
3300005842\|Ga0068858_101235403	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300005843\|Ga0068860_101603223	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300006169\|Ga0082029_1484151	Not Available	533	Open in IMG/M
3300006196\|Ga0075422_10174923	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	870	Open in IMG/M
3300006237\|Ga0097621_101303845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300006804\|Ga0079221_10918337	Not Available	645	Open in IMG/M
3300006806\|Ga0079220_11073366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300006844\|Ga0075428_100226504	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2018	Open in IMG/M
3300006844\|Ga0075428_100333221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1630	Open in IMG/M
3300006844\|Ga0075428_101975321	Not Available	605	Open in IMG/M
3300006871\|Ga0075434_100952197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	873	Open in IMG/M
3300006880\|Ga0075429_100938669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	757	Open in IMG/M
3300006954\|Ga0079219_10154206	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1232	Open in IMG/M
3300009101\|Ga0105247_10022073	All Organisms → cellular organisms → Bacteria → Acidobacteria	3831	Open in IMG/M
3300009176\|Ga0105242_12452647	Not Available	569	Open in IMG/M
3300009545\|Ga0105237_10606644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1101	Open in IMG/M
3300009789\|Ga0126307_10352690	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1185	Open in IMG/M
3300010046\|Ga0126384_10447450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1102	Open in IMG/M
3300010047\|Ga0126382_10153438	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1580	Open in IMG/M
3300010047\|Ga0126382_10607916	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	901	Open in IMG/M
3300010359\|Ga0126376_10004213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	8451	Open in IMG/M
3300010359\|Ga0126376_10445731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1181	Open in IMG/M
3300010371\|Ga0134125_12155161	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300010397\|Ga0134124_11386711	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300010397\|Ga0134124_11985998	Not Available	618	Open in IMG/M
3300010397\|Ga0134124_12439206	Not Available	565	Open in IMG/M
3300010399\|Ga0134127_11464777	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	755	Open in IMG/M
3300010400\|Ga0134122_11164166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300010400\|Ga0134122_12125992	Not Available	603	Open in IMG/M
3300011119\|Ga0105246_10026704	All Organisms → cellular organisms → Bacteria → Acidobacteria	3777	Open in IMG/M
3300012212\|Ga0150985_108391748	Not Available	3092	Open in IMG/M
3300012212\|Ga0150985_122388019	Not Available	659	Open in IMG/M
3300012961\|Ga0164302_10763905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	725	Open in IMG/M
3300013297\|Ga0157378_10971472	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	883	Open in IMG/M
3300013306\|Ga0163162_10793742	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1064	Open in IMG/M
3300013306\|Ga0163162_11832669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300013308\|Ga0157375_13038528	Not Available	560	Open in IMG/M
3300014325\|Ga0163163_11122913	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300014326\|Ga0157380_11096769	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	835	Open in IMG/M
3300014326\|Ga0157380_12206874	Not Available	614	Open in IMG/M
3300014326\|Ga0157380_13142680	Not Available	527	Open in IMG/M
3300015077\|Ga0173483_10767473	Not Available	553	Open in IMG/M
3300015371\|Ga0132258_10663044	All Organisms → cellular organisms → Bacteria → Acidobacteria	2624	Open in IMG/M
3300015373\|Ga0132257_101926732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	761	Open in IMG/M
3300015374\|Ga0132255_100712711	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1491	Open in IMG/M
3300015374\|Ga0132255_103485477	Not Available	669	Open in IMG/M
3300018469\|Ga0190270_11471307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300021377\|Ga0213874_10325127	Not Available	584	Open in IMG/M
3300021445\|Ga0182009_10801864	Not Available	515	Open in IMG/M
3300021560\|Ga0126371_11888154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	717	Open in IMG/M
3300025735\|Ga0207713_1128615	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	841	Open in IMG/M
3300025893\|Ga0207682_10164277	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1007	Open in IMG/M
3300025900\|Ga0207710_10709373	Not Available	528	Open in IMG/M
3300025904\|Ga0207647_10277249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957	Open in IMG/M
3300025908\|Ga0207643_10112191	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	1607	Open in IMG/M
3300025911\|Ga0207654_10204208	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1303	Open in IMG/M
3300025926\|Ga0207659_10078767	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2429	Open in IMG/M
3300025932\|Ga0207690_10020720	Not Available	4067	Open in IMG/M
3300025941\|Ga0207711_10120739	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2339	Open in IMG/M
3300025945\|Ga0207679_10267467	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1461	Open in IMG/M
3300025960\|Ga0207651_10880356	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	797	Open in IMG/M
3300025961\|Ga0207712_10873590	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793	Open in IMG/M
3300025981\|Ga0207640_10809613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300025986\|Ga0207658_11040155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	747	Open in IMG/M
3300026035\|Ga0207703_11693817	Not Available	608	Open in IMG/M
3300026035\|Ga0207703_11958187	Not Available	562	Open in IMG/M
3300026067\|Ga0207678_10708802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	886	Open in IMG/M
3300026088\|Ga0207641_10229548	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1724	Open in IMG/M
3300026095\|Ga0207676_10315743	Not Available	1432	Open in IMG/M
3300026095\|Ga0207676_12544065	Not Available	508	Open in IMG/M
3300026116\|Ga0207674_10036170	All Organisms → cellular organisms → Bacteria → Acidobacteria	5149	Open in IMG/M
3300026116\|Ga0207674_12009686	Not Available	543	Open in IMG/M
3300026118\|Ga0207675_101609179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300026306\|Ga0209468_1074855	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1133	Open in IMG/M
3300027775\|Ga0209177_10007855	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2286	Open in IMG/M
3300028381\|Ga0268264_10099948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2519	Open in IMG/M
3300028381\|Ga0268264_12204718	Not Available	559	Open in IMG/M
3300028381\|Ga0268264_12512114	Not Available	520	Open in IMG/M
3300031548\|Ga0307408_101439099	Not Available	650	Open in IMG/M
3300031716\|Ga0310813_11488754	Not Available	630	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	66.37%
Environmental	Environmental	33.63%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	65.49%
Terrestrial	Environmental → Terrestrial	33.63%
Human	Host-Associated → Human	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	33.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	30.97%
Roots	Host-Associated → Plants → Roots	2.65%
Digestive System	Host-Associated → Human → Digestive System	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.43%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	22.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.58%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.96%
Loam	Environmental → Terrestrial → Soil → Loam	6.19%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.77%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.89%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	22.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.27%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.77%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.89%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	13.27%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.19%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	6.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.31%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.54%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.77%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.89%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.89%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025735	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11615J12901_110925501	3300000953	Soil	MSYPGRFQLLFMALILAGSFSAVSGQGRGVNAERARAIEQAEMDRLLLWAIPKNESESTRQSRFKKIKDDFRDLQSLNNKMMADAWSQETLDYSSIADMVSKIRGKAADLKEGLSLPESEHSET
Ga0062590_1025894661	3300004157	Soil	MSYPIRFRSVLILLAMAVSFTCVQGQANAERARAIERADLDRLLVLAVPKDKESEAMRVSRLKRIKDDFRDLQSLNNKMMADAWMRDALDYSSITDMVSKIRSKANDLKDSLSLPESENPTAL
Ga0062595_1025790601	3300004479	Soil	WLISASEGSDEMSNQMRFELLLVCLSLTAFLSLVQGQGRGVNAERARAIERAEMDRLLLWALPSNKESEAVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSLSLPEAEKPETALTIPTVTTGRHLREELLLLDKTIMGFVTNPVF
Ga0062592_1012693082	3300004480	Soil	MSYPIRFRSVLILLAMAVSFTCVQGQANAERARAIERADLDRLLVLAVPKDKESEAMRVSRLKRIKDDFRDLQSLNNKMMADAWMQEALDYSSITDMVSKIRSKANDLKDSLSLPESENSQTAMKMPPVTTVRQFREQLLLLDK
Ga0058860_100405002	3300004801	Host-Associated	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSLSLPEA
Ga0062594_1008605612	3300005093	Soil	MSYPTRFQLLFLVLILASSISAVSGQGRGPNADRARAIEQADMDRLLLWAVPKKESEPNRLTRFKKIKDDFRNLQSLNNKMMADAWSQDTLDYASIADMVSKIRGKASDLKEGLLLPEAENSQTTAKNPAVTTVREFRAQLLLLD
Ga0062594_1008684491	3300005093	Soil	MSYPIRFRSVLILLALAVSFTCAQGQGNAERARAIERADLDRILLWAVPKDKESEVMRANRFKKIKEDFRDLQSLNNKMMADAWMKDALDYPAITDMVSKIRSKANDLKDGLALPAAEN
Ga0065712_101692191	3300005290	Miscanthus Rhizosphere	MGFRSVLILLALAVSFTCVHGQGRGVNAERARAIEQADMDRLLLWAVPKDRETEAMRVSRFKKIKDDFRDLQSLNNKMMADAWMQEALDYSAITDMVSKIRSKANDLKDSLALPQSENAQTALKTPAVD
Ga0065712_107422491	3300005290	Miscanthus Rhizosphere	MAHRSRFHLLLFALALAGLFSCAQGQGRGPNAERTRAIERAEMDRLLLWAVPKDKETEAMRENRFKRIKGDFRDLQSLNNKMMADAWLQDTVNYSSVADMVSKIRGKANDLKDGLSLPQS
Ga0065715_104467791	3300005293	Miscanthus Rhizosphere	MLYPTRFQLLLIVVTLAGTFCSIQGQGRGVNAERARAIERAEMDRLLLWALPKDKEPEAVRLNRFKKIKDDFRDLQSLNNKMMADAWLQDALDYSSIADMVSKIRGKANDLKDALSLPESEKPQATNKP
Ga0070670_1019770101	3300005331	Switchgrass Rhizosphere	MSYPTRFQLLFLVLILAGSISAVIGQGRGPNADRARAIEQADMDRLLLWAVPKKESEPNRLTRFKKIKDDFRDLQSLNNKMMADAWSQDTLDYASIADMVSKIRGKANDLKDGLSLPAPENAQTAAKSSA
Ga0066388_1085871461	3300005332	Tropical Forest Soil	MRFQLLFIALILAGVCSDVRGQGNAERARAIERADLDRLLLWAMPKDKESEAMRLSRFKKIKDDFRDLQSLNNKMMADAWAQDALDYSSIADMVSKIRGRASDLKD
Ga0070661_1008167712	3300005344	Corn Rhizosphere	MSNQMRFQLLLVCLSLTAFLSLVQGQGRGVNAERARAIERAEMDRLLLWALPSNKESEAVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSL
Ga0070692_103779571	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSYPTKFQFLLIAVLLTGSFVSVQGQGRGGNAERARAIERADMDRMLMWAVPKDKESEAVRLSRFKKIKDDFKALQSLNNKMMADAWLQDALDYSSIADMVSKIRGKANDLKDGLSLPSSENRETPSKPEVSTVRQFREQLLLLDKTIMRFVSNPVF
Ga0070668_1011485041	3300005347	Switchgrass Rhizosphere	MSNQMRFQLLLVCLSLTALFSFVQGQGRGVNAERARAIERAEMDRLLLWALPSNKESEAVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSLSLPEAEKSETALTIPTVTTGRHFREELLLLDKTIMGFVTN
Ga0070669_1008095422	3300005353	Switchgrass Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQ
Ga0070667_1001123112	3300005367	Switchgrass Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSLSLPEAEKSETALTIPTVTTGRHLREELLLLDKTIMGFVTN
Ga0070694_1004784862	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSLSLPEAEKPETALTIPTVTTGRHFREELLLLDKTIMGFV
Ga0070663_1011184661	3300005455	Corn Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSLSLPEAEKSETALTIPTVTTGRH
Ga0070678_1001652691	3300005456	Miscanthus Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSLSLPEAEKSETALTIPTVTTGRHFREELLLLDK
Ga0070679_1016176681	3300005530	Corn Rhizosphere	MSYPIRFRSVLILLALAVSFTCAQGQGNADRARAIERADLDRILLWAVPKDKESEVMRANRFKKIKEDFRDLQSLNNKMMADAWMKDALDYPAITDMVSKIRSKANDLKDGLALPAAENSAAASKIP
Ga0070672_1020886211	3300005543	Miscanthus Rhizosphere	MSNQMRFQLLLVCLSLTAFLSLVQGQGRGVNAERARAIERAEMDRLLLWALPSNKESEAVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQ
Ga0070696_1016684071	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSNQIRFQLLLLTLALVASVNSVQGQARSANRDRARSIESAEMDRLLLWAVPKNTESKSIRVSRFKKIKDDFRDLQSLNNKMMADAWSQDALDYASIADMVSKIRGKASGLKEGLLLP
Ga0070693_1005645121	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MSYPTRFQLLFLVLILAGSISAVSGQGRGVNAERARAIEQAEMDRLLLWAVPKKESEPNRLTRFKKIKDDFRDLQSLNNKMMADAWSQDTLDYASIADMVSKIRGKASDLKEGLLLPEAENSQTTAKNPAVTTVREFRAQLLL
Ga0070693_1011886171	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MDNLRPKEVDEMSHRTRLLSILVPLALAVSFTCVQGQGANAERARAIERADMDRLLLWAVPKDKESESVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDTLDYSSIADMVGKIRGKANDLKDGLSL
Ga0070664_1010731641	3300005564	Corn Rhizosphere	MAHRSRFHLLLFALALAGSFSCAQGQGRGPNAERTRAIERAEMDRLLLWAVPKDKETEAMRENRFKRIKGDFRDLQSLNNKMMADAWLQDTLDYSSIADMVAKIRGKANDLKDSLSLPESENAQTD
Ga0068857_1001018212	3300005577	Corn Rhizosphere	MSYPTRFQLLFLVLILAGSISAVSGQGRGPNADRARAIEQADMDRLLLWAVPKKESAPNRLTRFKKIKDDFRDLQSLNNKMMADAWSQDTLDYASIADMVSKIRGKANDLKDG
Ga0068854_1020651031	3300005578	Corn Rhizosphere	MSYPMGFRSVLILLALAVSFTCVHGQGRGVNAERARAIEQADMDRLLLWAVPKDRETEAMRVSRFKKIKDDFRDLQSLNNKMMADAWMQEALDYSAITDMVSKIRSKANDLKDSLALPQSENAQT
Ga0068852_1008806872	3300005616	Corn Rhizosphere	MDNLRPKEVDEMSHRTRLLSILVPLALAVSFTCVQGQGANAERARAIERADMDRLLLWAVPKDKESESVRLSRFKKIKDDFRDLQALNNKMMADAWMQDALDYAAVADMVSKIRGKANDLKDGLSLPESENSQTEVKMPAVTTVR
Ga0068859_1003381431	3300005617	Switchgrass Rhizosphere	MSYPTRFQLLFLVLILAGSISAVSGQGRGPNADRARAIEQADMDRLLLWALPKKESEPNRLTRFKKIKDDFRDLQSLNNKMMADAWSQDTLDYASIADMVSKIRGKANDLKDGLSLPTPENFQTAAKSSAVTTVREFRAQLLLLDKTLMSFVNN
Ga0068859_1011383931	3300005617	Switchgrass Rhizosphere	MSYPMGFRSVLILLALAVSFTCVHGQGRGVNAERARAIEQADMDRLLLWAVPKDRETEAMRVSRFKKIKDDFRDLQSLNNKMMADAWMQEALDYSAITDMVSKIRSKANDLKDSLALPQSENAQTALKTPSVDS
Ga0068863_1020861511	3300005841	Switchgrass Rhizosphere	MLYRTRFELLLIAVTLAGSFSGVQAQGRGANADRARAIEQAEMDRLLNWAVPKDKESEVMRLNRFKKIKDDFRDLQALNNKMMADAWMQDALDYAAVADMVSKIRGKANDLKDGLSLPESENSQTEVKMPAVTTVRQF
Ga0068858_1006765542	3300005842	Switchgrass Rhizosphere	MSNQMRFQLLLVCLSLTAFLSLVQGQGRGVNAERARAIERAEMDRLLLWALPSNKESEAVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSLSLPEAEK
Ga0068858_1012354032	3300005842	Switchgrass Rhizosphere	MDNLRPKEVDEMSHRTRLLSILVPLALAVSFTCVQGQGANAERARAIERADMDRLLLWAVPKDKESESVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDTLDYSSIADMVGKIRGKANDLKDGLSLPESEASQTVAKLPAVTTIRQFREELLL
Ga0068860_1016032232	3300005843	Switchgrass Rhizosphere	MPYQLRFQVLLIAAILAGSFSCVQGQGRAVNAERARAIERAEMDRLLLWAIPKDTESEATRLSRFNKIKGDFRDLQSLNNKMMADAWAQEALDYSSISEMVSKIRGKANDLKDSLSLPD
Ga0082029_14841512	3300006169	Termite Nest	MSQLTRFRSLLIPLAMAVSFSCVHGQGRGPNAERARAIGRAGMDRLLLWAIPKDTESESLRLSRFKKIKGDFRDLQSLNNKMMADAWLQDALDYSSIAEMVSKIRGRASDLKDGLSLPASETSETASKTLDVTTS
Ga0075422_101749231	3300006196	Populus Rhizosphere	MSYAMRFQLLTITLTLAASVSYVQGQGRSPNSERARAIERAEMDRLLTWALPSNKDSEATRLNRFKKIKDDFRDLQSLNNKMMAEAWLQDALDYSSIAEMVSKIRGKAKDLKESLSLPESDESEKALTVPTITTVRQ
Ga0097621_1013038451	3300006237	Miscanthus Rhizosphere	MSHRTRLQFFLVPLALAVSFTCVQGQGRNAERARAIERADMDRLLLWAVPKDKESESVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDTLDYSSIADMVGKIRGKANDLKDGLSLPESE
Ga0079221_109183372	3300006804	Agricultural Soil	VKSSLILLAMAVSFTCVQGQGNAERARAIERADLDRILLWAVPKDKESDAMRLNRFKKIKEDFRDLQSLNNKMMADAWMKEALDYSSIADMVSKIRGKANDLKDSLALPQSENSQAAPKAPAVTTAKQFREELLLLDKKIMSFVNNPVFQ
Ga0079220_110733661	3300006806	Agricultural Soil	MSYPIRFRSVLILLAVAVSFTCVQGQGRGVNAERARAIEQADMDRLLLWAVPKDKESEAVRLNRFKKIKGDFRDLQSLNNKMMADAWMQEALDYSAIADMVSKIRGKANDLK
Ga0075428_1002265042	3300006844	Populus Rhizosphere	MWNSNRFQSLLITLAVLICFDCVQGQGRNRDRARAIERAEMDRLLLWAMPKDEEPEAVRVSRFKKIKDDFRDLQSLHNKMMADAWLQETLDYSSIAETVSKIRGKANSLKDG
Ga0075428_1003332211	3300006844	Populus Rhizosphere	MEVSEMSFQSLLIPLVLAVSVNCVQAQGRGVNAERARAIERAEMDRLLLWAIPKDNESEAMRLNRFKKIKDDFRDLQSLNNKMMADAWLQDMLDYSSIAEMVSKIRGKANDLKKSLSLPESDEPETALKVPSVTTLRQFREELLLLDKTLMGFVTNPVFQA
Ga0075428_1019753211	3300006844	Populus Rhizosphere	MSQLTRFRFLLIPLALAVSFACVQGQGRGPNAERARAIERAEMDRLLLWAVPKDKESESMRLSRFKKIKDDFRDLQSLNNKMMADAWMQDALDYSSIAEMVSRIRSKANDLKDGLSLPESKNSETALKTPAVSTVRQFREE
Ga0075434_1009521972	3300006871	Populus Rhizosphere	MSYPTRFQLLFLTLILAGSVGAVSGQGRGVNAERARAIEQADMDRLLLWAIPKNESESVRLNRFKQIKADFRDLQSLNNKMMADAWSQDTLDYSSIADMVSKIRNKAGDLKEGLSLPEAENS
Ga0075429_1009386691	3300006880	Populus Rhizosphere	MWYRKRFQLLLIPLVLAASFSCVQGQSRSSNRDRARAIERAEMDRLLLWAVPKDKESESVRLSRFKKIKDDFRDLQSLNNKMMAEAWLQDTLDYSSIEDMVSKIRSKANSLKEGLSLPESEKPETSLKIPAVASVRQFREELLLLDKTIMRFV
Ga0079219_101542062	3300006954	Agricultural Soil	MSYPMRFRSVLILLAVAVSFTCVQGQGRGVNAERARAIEQADMDRLLLWAVPKDKESEAVRLNRFKKIKGDFRDLQSLNNKMMADAWMQEALDYSAIADMVSKIRGKANDLKDALSLPESENPQAALKT
Ga0105247_100220731	3300009101	Switchgrass Rhizosphere	MSYPTRFQLLFLVLILAGSISAVSGQGRGPNADRARAIEQADMDRLLLWAVPKKESAPNRLTRFKKIKDDFRDLQSLNNKMMADAWSQDTLDYASIADMVSKIRGKANDLKDGLSLPAPENAQTAAKS
Ga0105242_124526471	3300009176	Miscanthus Rhizosphere	MSYPTKFPLLFFVLILAGSISAVSGQGRGVNAERARAIEQAEMDRLLLWALPKKESEPNRLTRFKKIKDDFRDLQSLNNKMMADAWSQDTLDYASIADMVSKIRGKASDLKEGLSLPDAENSTAAKTQAVTTV
Ga0105237_106066441	3300009545	Corn Rhizosphere	MLYPTRFQLLLIVVTLAGTFCSIQGQGRGVNAERARAIERAEMDRLLLWALPKDKEPEAVRLNRFKKIKDDFRDLQSLNNKMMADAWLQDALDYSSIADMVSKIRGKANDLKDALSLPESEKPQATNKPPEVTTVRQFRAELLLLDQTLMRFVNNPVF
Ga0126307_103526902	3300009789	Serpentine Soil	MSYPGRFQLLLIALALAGSFSGVQGQGRNAERARAIERAEMDRLLLWAIPKAKESESTRLSRFKKIKDDFRDLQSSNNKMMANAWLQDTLDYSSIAEMVSKIQDKANDLKDGLSLPESEKPQT
Ga0126384_104474502	3300010046	Tropical Forest Soil	MVYPTNFQLLLFVLVLTISSGCVQGQARSSSREQTRAIERAEMDRLLLFAIPKDKESEAVRESRFKKIKDDFRSLQSLNNKMMADAWLQDALDYSSIGDMVSKIRGKANDLKGSLSLPETEKCETAAKLPAATTARQFRERLLLLDKTIMGFV
Ga0126382_101534381	3300010047	Tropical Forest Soil	VDEMSYPTKFQLLLVALALTVSFRCVQGQARSRSPNSERTRAIERAEMDRLLLFAMPKDKESEATRLARFKKIKDDFRDLQTLNNKMMADAWLQDALDYSSIADMLSKIRGKANDLKDSLSLPESEKPEAAAKIPDATTVRHVREKLLLL
Ga0126382_106079161	3300010047	Tropical Forest Soil	MSYPTRFQLLLIALALAGSFSSVQGQANAERARAIERADLDRILLWAVPKDKESESARLSRFKKIKDDFRDLQSLNNKMMANAWLQEALDYSSIADMVSKIRGKANDLKEGLSLPQSENPQTDLKVRTVTTVRQFR
Ga0126376_100042131	3300010359	Tropical Forest Soil	MSYPTRFQLLLIALALAGSFSSVQGQANAERARAIERADLDRILLWAVPKDKESESARLSRFKKIKDDFRDLQSLNNKMMANAWLQEALDYSSIADMVSKIRGKAND
Ga0126376_104457311	3300010359	Tropical Forest Soil	MWYPTRFQLLLIALALTGSFNCVLGQARSPNSERTRAIERADMDRLLLFAMPKDKDSESARLSRFKKIKDDFRSLQSLNNKMMADAWLQDAIDYSSIVDMVSKIRGKANDLKDSLTLPEPEQSEAASKMPAATTSRQ
Ga0134125_121551612	3300010371	Terrestrial Soil	MSYPKRFQLLFLVLILAGSITAVSGQGRGVNAERARAIEQAEMDRLLLWALPKKESEPNRLTRFKKIKDEFRDLQSLNNKMMAAAWSQDTLDYAAIADMVSKIRG
Ga0134124_113867111	3300010397	Terrestrial Soil	MFATLFVLPSPLKGVNQMSPQMRFQLLVIAVILAGAVSSVQAQGRNSNADRTRAIEQADLDRLLLWAVPKDKESEAMRLNRFKKIKEDCRDLQSLNNKMMADAWMQETLDYPSIADMVSKIRGKANDLKDSLA
Ga0134124_119859981	3300010397	Terrestrial Soil	MSYPIRFRSVLILLALAVSFTCAQGQGNAERARAIERADLDRILLWAVPKDKESEVMRANRFKKIKEDFRDLQSLNNKMMADAWMKDALDYPAITDMVSKIRSKANDLKDGLALPAAENPAAASKVPTVTTARQFREELLLLDKKVMS
Ga0134124_124392061	3300010397	Terrestrial Soil	MLYRTRLELLLIALTLAGSFSCVQAQGRGANADRARAIEQAEMDRLLNWAVPKDKESETMRLNRFKKIKDDFRDLQALNNKMMADAWMQDALDYSAVADMVSKIRGKANDLKDGLSLPESENSQTELKMPT
Ga0134127_114647771	3300010399	Terrestrial Soil	MDIRHPLLFGKRVACMDNLRPKEVDEMSHRTRLLSILVPLALAVSFTCVQGQGANAERARAIERADMDRLLLWAVPKDKESESVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDTLDYSSIADMVAKIRGKANDLKDGLSLPESEN
Ga0134122_111641662	3300010400	Terrestrial Soil	MRFQCLLITLVFAVSFSCVQGQGRGPNAERARTIERAEMDRLLLWALPSDKESEATRLSRFKKIKDDFRDLQSFNNKMMADAWLQEMLDYSSIAEMISKIRGKANDLKKSLSLPESDEPKKELKVP
Ga0134122_121259922	3300010400	Terrestrial Soil	MLLMALILTVSFNCVQGQGRGVNAERARAIERAEMDRLLLWALPKDTESEAMRLSRFKKIKEDFRDLQSFNNKMMADAWMQDALDYSAITEMVSKIRAKANDLKGGLSLPEAEKP
Ga0105246_100267041	3300011119	Miscanthus Rhizosphere	MSYPTRFQLLFLVLILAGSISAVSGQGRGPNADRARAIEQADMDRLLLWAVPKKESEPNRLTRFKKIKDDFRDLQSLNNKMMADAWSQDTLDYASIADMVSKIRGKANDLKDGLSLPAPENAQTAAKSSAVTTVREFRAQ
Ga0150985_1083917481	3300012212	Avena Fatua Rhizosphere	MRFRSVLIPLALAVSFTCVHGQGRGVNAERARAIERAEMDRLLLWAVPKDKEPEAMRVSRFKKIKDDFRDLQSLNNKMMADAWMRDALDYSSITDMVSKIRGKANDLKEALSLPQSENPQTALKTPAVTTVRQFR
Ga0150985_1223880191	3300012212	Avena Fatua Rhizosphere	MSYRIRFQLLLIALALTVSFSNVQGQGRGVNSERARAIEQADMDRLLLWAVPKDKESESMRVSRFKKIKDDFRDLQSLNNKMMADAWMQDAVDYSAVADMVSKIRGKANDLKE
Ga0164302_107639051	3300012961	Soil	LTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSSIAEMVSKIQGKANDLKKS
Ga0157378_109714722	3300013297	Miscanthus Rhizosphere	MSYPKRFQLLFLVLILAGSISAVSGQGRGPNGDRARAIEQADMDRLLLWAIPKNESEALRLSRFKKIKDDFRDLQSLNNKMMADAWSKEALDYASIADMVSKIRGKASDLKEGLSLPEAENSQTTAKTQAVTTVREFRAELLLLD
Ga0163162_107937422	3300013306	Switchgrass Rhizosphere	MSYPTKFPLLFFVLILAGSISAVSGQGRGVNAERARAIEQAEMDRLLLWALPKKESEPNRLTRFKKIKDDFRDLQSLNNKMMADAWSQDTLDYASIAEMVSKIRGKAS
Ga0163162_118326692	3300013306	Switchgrass Rhizosphere	LTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKK
Ga0157375_130385281	3300013308	Miscanthus Rhizosphere	MRFQLLLVCLSLTAFLSLVQGQGRGVNAERARAIERAEMDRLLLWALPSNKESEAVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKK
Ga0163163_111229132	3300014325	Switchgrass Rhizosphere	MLLALAVSFTCVQGQGRGVNAERARAIERAEMDRLLLWAVPKDKESEAMRVSRFKKIKDDFRDLQALNNKMMADAWMQDALDYSSITDMVSKIRSKANDLKEGLSLPESENSQTALKTAAVTTDRQFREQ
Ga0157380_110967692	3300014326	Switchgrass Rhizosphere	LTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSLSLPEAEKSETALTIPTVTTGRHFREELLLLDKTIMGFVTNPVFQAAN
Ga0157380_122068741	3300014326	Switchgrass Rhizosphere	MSYPTRFQFLLIAVLLTASFVSVQGQGRGGNAERARAIERADMDRMLMWAVPKDKESEAVRLSRFKKIKDDFKALQSLNNKMMADAWLQDALDYSSIADMVSKIRGKANDLKDGLSLPSSENRETPSKPEVSTVRQFREQLLLL
Ga0157380_131426801	3300014326	Switchgrass Rhizosphere	RRNLRHPVFFQIDEWKNDARWKGVNEMLYAMRFQLLMITPMIILAHAVSVGFVQGQGRCPNSDRPRAIERAEMARLLVFALPSNKESEATRLSRFKKIKDDFRDLQSINNKMMADAWLQDVLDYSAIAEMVSKIRGQANDLKKSLSLPEPDRAEEELTVPTVTTVRKFREELLLL
Ga0173483_107674732	3300015077	Soil	MRFQLLLVCLSLTAFLSLVQGQGRGVNAERARAIERAEMDRLLLWALPSNKESEAVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSLSLPEAEKSE
Ga0132258_106630442	3300015371	Arabidopsis Rhizosphere	MLLIALTLAGSFVAVQAQGRGPNAERARAIERADMDRLLLWAVPKNKESEAMRVNRFKKIKDDFRDLQALNNKMMADAWLQDTLDYSAIADMVSKIRGKANDLKDGLSLPASEQPQTGSKAPAVDSVRQFR
Ga0132257_1019267322	3300015373	Arabidopsis Rhizosphere	MSRLTGFQSLLIPLAIAVSFTCVQGQGRGVNAERARAIERAEMDRLLLWAVPKDKESESVRLSRFKKIKDDFRDLQSLNNKMMADAWSQDALDYSSIADMVSKIRGKANDLKDGLSLPEAENSQMAAKNPAVTTVREFRAQLLLLD
Ga0132255_1007127112	3300015374	Arabidopsis Rhizosphere	MLLIALTLAGSFVAVQAQGRGPNAERARAIERADMDRLLLWAVPKNKESEAMRVNRFKKIKDDFRDLQALNNKMMADAWLQDTLDYSAIADMVSKIRGKANDLKDGLSLPASEQPQTGSKAP
Ga0132255_1034854771	3300015374	Arabidopsis Rhizosphere	MRFQCLLIPLVLAVSLSVQGQGRGPNADRARAIERAEMDRLLLWALPNDKESEATRLSRFKKIKDDFRDLQSFNNKMMADAWLQEMLDYSAVAEMVSKIRGKANDLKKSLSLPESDEPGPAVKVPTVTTVRQFREELLLLDKTIMRF
Ga0190270_114713071	3300018469	Soil	MSYATRLQLLMIVLSLAVSFSLVQGQGRSPNSERVRAIERAEMDRLLLWALPSNKESEATRLNRFKKIKDDFRDLQSLNNKMMADAWLKDALDYSSIAEMVSKIRGKANDLKESLSIPESEKS
Ga0213874_103251271	3300021377	Plant Roots	MPLEFQDRRRRRLPEGVLRGFPMASQKLIRLLLIAPLLAISFIYVQGQGNAERARAIEQADMDRILMFAIPKDKESEAVRLSRFKKIKEDFRDLQSLNNKMMADAWMQEALDYSVIADMVSKIRGKANSLKSSLTLPEPEKADAAMPAVTTVRQFREELLLLDK
Ga0182009_108018641	3300021445	Soil	MPYPMGFRSLLILLALAVSFTCVQGQGRGVNAERARAIERAEMDRLLLWAVPKDRETEAMRVSRFKKIKDDFRDLQSLNNKMMADAWMQDALDYSSITDMVSKIRGKANDLKDSLALPQSENAQTALKTPDVTTVRQFREQLLLLDKTLMSFVTNPVFQA
Ga0126371_118881542	3300021560	Tropical Forest Soil	MASQKLFRLLLVAPLLAISFTCVLGQRGANAERTRAIEQADMDRILMFAIPKDKESEAVRLSRFKKIKEDFRDLQSFNNKMMADAWMQEALDYSAIADMVSKIRGRANSLKSSLTLPEPDKSVAALPAVTTVRQFREELLLLDKTLM
Ga0207713_11286151	3300025735	Switchgrass Rhizosphere	MSYPTRFQLLFLVLILASSISAVSGQGRGPNADRARAIEQADMDRLLLWAVPKKESEPNRLTRFKKIKDDFRDLQSLNNKMMADAWSQDTLDYASIADMVSKIRGKASELKEGLLLPEAENSQTTAKNPAVTTVREFRAQLLLLDKTLMSFVNNPVF
Ga0207682_101642772	3300025893	Miscanthus Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMAEAWLQDALNYSSIAEMVSKI
Ga0207710_107093731	3300025900	Switchgrass Rhizosphere	MSYPTRFQLLFLVLILASSISAVSGQGRGPNADRARAIEQADMDRLLLWAVPKKESEPNRLTRFKKIKDDFRDLQSLNNKMMADAWSQDTLDYASIADMVSKIRGKASELKEGLLLPEAENSQTTAKNPAVTTVREFRAQLLLLDKT
Ga0207647_102772492	3300025904	Corn Rhizosphere	MSYPTRFQFLLIAVLLTASFVSVQGQGRGGNAERARAIERADMDRMLMWAVPKDKESEAVRLSRFKKIKDDFKALQSLNNKMMADAWLQDALDYSSIADMVSKIRGKANDLKDGLSLPASENRETPSKPEVSTVRQFREQLLLLDKTIMRFVSNPVF
Ga0207643_101121913	3300025908	Miscanthus Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKA
Ga0207654_102042082	3300025911	Corn Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKI
Ga0207659_100787671	3300025926	Miscanthus Rhizosphere	MSYPMRFQLLLIAVLLTGVFCSVQGQGRGVNAERARAIERADMDRLLLWAVPKDKEPEAVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALDYSSITDMVSKIRGKANDLKDSLSLPAAENSESKLPAVTTV
Ga0207690_100207201	3300025932	Corn Rhizosphere	MSYPMRFRSGLILLAMALSFTYVHGQGRGVNAERARAIEQADMDRLLLWAVPKDKESESMRVSRFKKIKDDFRDLQSLNNKMMADAWMQDAVDYSAVADMVSKIRGKANDLKEGLSLPESENQQTALQTPTVTTV
Ga0207711_101207391	3300025941	Switchgrass Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSL
Ga0207679_102674671	3300025945	Corn Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSLSLPEAEKSETALTIPTVTTGRHLREELLLLDKTIMGFV
Ga0207651_108803561	3300025960	Switchgrass Rhizosphere	MAHRSRFHLLLFALALAGSFSCAQGQGRGPNAERTRAIERAEMDRLLLWAVPKDKETEAMRENRFKRIKGDFRDLQSLNNKMMADAWLQDTVNYSSVADMVSKIRGKANDLKDGLSLPQSEEPQKGLKAPAVTTPRQFREEL
Ga0207712_108735901	3300025961	Switchgrass Rhizosphere	MLYPTRFQLLLIVVTLAGTFCSIQGQGRGANAERARAIERAEMDRLLLWAVPKDKEPEAVRLNRFKKIKDDFRDLQSLHNKMMADAWLQETIDYSTVGEMVSKIRGKASDLKEGLALPHSETSETDLKVPTVTTIR
Ga0207640_108096131	3300025981	Corn Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWMQEALDYSAITDMVSKIRSKANDLKDGLALPAAENPAAASKVPTVTTARQFREE
Ga0207658_110401551	3300025986	Switchgrass Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSLSLPEAEKSETALTIPTVTTGRHF
Ga0207703_116938171	3300026035	Switchgrass Rhizosphere	MDNLRPKEVDEMSHRTRLLSILVPLALAVSSTCVQGQGANAERARAIERADMDRLLLWAVPKDKESESVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDTLDYSSIADMVGKIRGKANDLKDGLSLPESEASQTVAKLPAVTTIRQFREELLL
Ga0207703_119581871	3300026035	Switchgrass Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKAND
Ga0207678_107088022	3300026067	Corn Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSLSLPEAEKSETALTIPTVTTGRHFREELLLL
Ga0207641_102295482	3300026088	Switchgrass Rhizosphere	MSNQMRFRLLLVCLSLTALFSFVQGQGRGVNAERARVIERAEMDRLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVSKIQGKANDLKKSLSLP
Ga0207676_103157431	3300026095	Switchgrass Rhizosphere	MAHRSRFHLLLFALALAGSFSCAQGQGRGPNAERTRAIERAEMDRLLLWAVPKDKETEAMRENRFKRIKGDFRDLQSLNNKMMADAWLQDTVNYSSVADMVSKIRGKANDLK
Ga0207676_125440652	3300026095	Switchgrass Rhizosphere	MSHRTRLQFFLVPLALAVSFTCVQGQGRNAERARAIERADMDRLLLWAVPKDKESESMRMNRFKKIKDDFRDLQSLNNKMMADAWLQDTLDYSSIADMVGKIRGKANDLKDGLSLPESEASQTVAK
Ga0207674_100361701	3300026116	Corn Rhizosphere	MSYPTRFQLLFLVLILAGSISAVSGQGRGPNADRARAIEQADMDRLLLWAVPKKESAPNRLTRFKKIKDDFRDLQSLNNKMMADAWSQDTLDYASIADMVSKIRGKANDLKDGLSLPTPENFQT
Ga0207674_120096861	3300026116	Corn Rhizosphere	MSYPTRFQLLFIALILAGSVSAVSGQGRGVNAERARAIERAEMDRLLLWAVPKKESESIRLSHFKKIKDDFRDLQSLNNKMMADAWSKDALDYSFIADMVSKIRGKAGDLKEGLSLPESANSQTA
Ga0207675_1016091791	3300026118	Switchgrass Rhizosphere	MSYPTRFRLLFITLMLAGSFTAVSGQGRGVNAERARAIERAEMDRLLLWAVPKNESEPNRFNRFKKIKDDFRELQSLNNKMMADAWLQETLDYSSITDMVSKIHGKANDLKEGLSLP
Ga0209468_10748552	3300026306	Soil	MFYAIRFQLLIITLTVAASVNYVQGQGRSPNSERARAIERAEMDRLLTWALPSNKESEATRLNRFKKIKDDFRDLQSLNNKMMSDAWLQAALDYSSIAEMVSKIRGKANDLKESLSLPESEKS
Ga0209177_100078551	3300027775	Agricultural Soil	MSYPIRFRSVLILLAMAVSFTCVQGQGNAERARAIERADLDRILLLAVPKDKESEAMRLNRYKKIKEDFRDLQSLNNKMMADAWMKEALDYSSIADMVSKIRGKANDLKDSLALPQSENSQAAPKAPAVT
Ga0268264_100999481	3300028381	Switchgrass Rhizosphere	MDNLRPKEVDEMSHRTRLLSILVPLALAVSFTCVQGQGANAERARAIERADMDRLLLWAVPKDKESESVRLSRFKKIKDDFRDLQSLNNKMMADAWLQDTLDYSSIADMVGKIRGK
Ga0268264_122047182	3300028381	Switchgrass Rhizosphere	MSHRTRLQLFLLPLALAVSFTCVQGQGRNAERARAIERADMDRLLLWAVPKDKESESMRMNRFKKIKDDFRDLQSLNNKMMADAWLQDTLDYSSIADMVAKIRGKANDLKDGLSLPESENPQTDSKLPAVTTVRQFREELLLLDKTL
Ga0268264_125121141	3300028381	Switchgrass Rhizosphere	MLYRTRFELLLIAVTLAGSFSGVQAQGRGANADRARAIEQAEMDRLLNWAVPKDKESEVMRLNRFKKIKDDFRDLQALNNKMMADAWMQDALDYAAVADMVSKIRGK
Ga0307408_1014390991	3300031548	Rhizosphere	MWYSNRFQSLLITLAVLVCFDCVQGQGRNRERARAIERAEMDRLLLWAVPKDEESEAVRVSRFKKIKDDFRDLQSLHNKMMADAWLQETLDYSSIAEMVSKIRGKANSLKEGLSLPQSDEPKTDLKMPAVTTVRQFREELLLLDK
Ga0310813_114887541	3300031716	Soil	MSRLMRFQLLVIVVILAGSLSSAQGQGRGVNAERARAIEQADMDRLLMWAIPKDKESEAVRLNRFKKIKEDFRDLQSLNNKMMADAWMQETLDYSSIADMTSKIRGKANDLKDSLSLPASEKSETPAKMPDV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083215

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences