Metagenome / Metatranscriptome Family F083190

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083190
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	56 residues
Representative Sequence	VERFLLEGMVPVTCGGGEGLMKIYFLLMIVSVFVALSYIPIRAEPKQNPAAPPDSVPA
Number of Associated Samples	87
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	15.93 %
% of genes near scaffold ends (potentially truncated)	26.55 %
% of genes from short scaffolds (< 2000 bps)	86.73 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.407 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.434 % of family members)
Environment Ontology (ENVO)	Unclassified (38.938 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.788 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.91% β-sheet: 0.00% Coil/Unstructured: 72.09%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF01343	Peptidase_S49	10.62
PF13659	Obsolete Pfam Family	9.73
PF01972	SDH_sah	8.85
PF00348	polyprenyl_synt	6.19
PF05175	MTS	4.42
PF03401	TctC	1.77
PF02417	Chromate_transp	1.77
PF09413	DUF2007	1.77
PF02091	tRNA-synt_2e	0.88
PF13450	NAD_binding_8	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	38.94
COG0142	Geranylgeranyl pyrophosphate synthase	Coenzyme transport and metabolism [H]	6.19
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	1.77
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.77
COG0752	Glycyl-tRNA synthetase, alpha subunit	Translation, ribosomal structure and biogenesis [J]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.41 %
Unclassified	root	N/A	41.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.41 %
Unclassified	root	N/A	41.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.41 %
Unclassified	root	N/A	41.59 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	57.52 %
Unclassified	root	N/A	41.59 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	49.56 %
Unclassified	root	N/A	41.59 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	42.48 %
Unclassified	root	N/A	41.59 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.59 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	16.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.59 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.19 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	1.77 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.59 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.19 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1.77 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10306415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	640	Open in IMG/M
3300004633\|Ga0066395_10000633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13029	Open in IMG/M
3300004633\|Ga0066395_10422435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	755	Open in IMG/M
3300004633\|Ga0066395_11017967	Not Available	506	Open in IMG/M
3300005167\|Ga0066672_10827048	Not Available	580	Open in IMG/M
3300005179\|Ga0066684_10110403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1699	Open in IMG/M
3300005332\|Ga0066388_100006950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8219	Open in IMG/M
3300005332\|Ga0066388_100031701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	4985	Open in IMG/M
3300005332\|Ga0066388_100083280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3584	Open in IMG/M
3300005332\|Ga0066388_100114931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3197	Open in IMG/M
3300005332\|Ga0066388_101081333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1355	Open in IMG/M
3300005332\|Ga0066388_101411778	Not Available	1210	Open in IMG/M
3300005332\|Ga0066388_103137416	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300005363\|Ga0008090_10060278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2243	Open in IMG/M
3300005363\|Ga0008090_10235747	All Organisms → cellular organisms → Bacteria → Proteobacteria	752	Open in IMG/M
3300005434\|Ga0070709_11330334	Not Available	580	Open in IMG/M
3300005435\|Ga0070714_100360081	Not Available	1368	Open in IMG/M
3300005436\|Ga0070713_100131930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2204	Open in IMG/M
3300005436\|Ga0070713_100320458	Not Available	1431	Open in IMG/M
3300005437\|Ga0070710_10177004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1333	Open in IMG/M
3300005560\|Ga0066670_10409358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	832	Open in IMG/M
3300005566\|Ga0066693_10273118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	672	Open in IMG/M
3300005764\|Ga0066903_100745276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1738	Open in IMG/M
3300005764\|Ga0066903_100777204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1707	Open in IMG/M
3300005764\|Ga0066903_101302625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1357	Open in IMG/M
3300005764\|Ga0066903_104005309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	790	Open in IMG/M
3300005764\|Ga0066903_104332899	All Organisms → cellular organisms → Bacteria → Proteobacteria	758	Open in IMG/M
3300005921\|Ga0070766_10476800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	826	Open in IMG/M
3300006041\|Ga0075023_100557997	Not Available	525	Open in IMG/M
3300006047\|Ga0075024_100253891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	845	Open in IMG/M
3300006047\|Ga0075024_100678838	Not Available	563	Open in IMG/M
3300006057\|Ga0075026_100275865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	910	Open in IMG/M
3300006102\|Ga0075015_100830031	Not Available	557	Open in IMG/M
3300006172\|Ga0075018_10523745	Not Available	621	Open in IMG/M
3300006173\|Ga0070716_100589054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	835	Open in IMG/M
3300006175\|Ga0070712_100513823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1005	Open in IMG/M
3300006176\|Ga0070765_100235591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1674	Open in IMG/M
3300006755\|Ga0079222_12658921	Not Available	503	Open in IMG/M
3300006797\|Ga0066659_11400302	Not Available	584	Open in IMG/M
3300006893\|Ga0073928_10470362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	907	Open in IMG/M
3300006893\|Ga0073928_10488742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	885	Open in IMG/M
3300009792\|Ga0126374_10717948	Not Available	754	Open in IMG/M
3300010048\|Ga0126373_10011977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7058	Open in IMG/M
3300010048\|Ga0126373_10068313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3203	Open in IMG/M
3300010358\|Ga0126370_12427418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	521	Open in IMG/M
3300010366\|Ga0126379_11583481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	760	Open in IMG/M
3300010366\|Ga0126379_13711088	Not Available	512	Open in IMG/M
3300010376\|Ga0126381_100006534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12901	Open in IMG/M
3300010376\|Ga0126381_104968840	Not Available	510	Open in IMG/M
3300010376\|Ga0126381_105092815	Not Available	503	Open in IMG/M
3300010868\|Ga0124844_1025259	Not Available	1810	Open in IMG/M
3300012181\|Ga0153922_1168606	Not Available	517	Open in IMG/M
3300012198\|Ga0137364_10386787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1046	Open in IMG/M
3300012948\|Ga0126375_10118656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1608	Open in IMG/M
3300016422\|Ga0182039_10568506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	987	Open in IMG/M
3300017822\|Ga0187802_10000105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18138	Open in IMG/M
3300017927\|Ga0187824_10348256	Not Available	534	Open in IMG/M
3300017937\|Ga0187809_10382418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	533	Open in IMG/M
3300017974\|Ga0187777_11105189	Not Available	577	Open in IMG/M
3300018433\|Ga0066667_11424056	Not Available	609	Open in IMG/M
3300020579\|Ga0210407_10818718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	717	Open in IMG/M
3300020580\|Ga0210403_10965854	Not Available	668	Open in IMG/M
3300020581\|Ga0210399_10996832	Not Available	675	Open in IMG/M
3300021168\|Ga0210406_10590895	Not Available	868	Open in IMG/M
3300021432\|Ga0210384_11240996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	650	Open in IMG/M
3300021560\|Ga0126371_10306140	Not Available	1717	Open in IMG/M
3300021560\|Ga0126371_13603435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	522	Open in IMG/M
3300022557\|Ga0212123_10442949	Not Available	858	Open in IMG/M
3300022557\|Ga0212123_10472940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	820	Open in IMG/M
3300025898\|Ga0207692_10859323	Not Available	595	Open in IMG/M
3300025915\|Ga0207693_11005924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	636	Open in IMG/M
3300025916\|Ga0207663_10043188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2758	Open in IMG/M
3300025916\|Ga0207663_10411205	Not Available	1036	Open in IMG/M
3300025929\|Ga0207664_10755119	Not Available	875	Open in IMG/M
3300026330\|Ga0209473_1247713	Not Available	617	Open in IMG/M
3300027003\|Ga0207722_1021508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	710	Open in IMG/M
3300027874\|Ga0209465_10521372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	593	Open in IMG/M
3300027882\|Ga0209590_10638215	Not Available	684	Open in IMG/M
3300027915\|Ga0209069_10333378	Not Available	814	Open in IMG/M
3300028047\|Ga0209526_10388511	All Organisms → cellular organisms → Bacteria → Acidobacteria	928	Open in IMG/M
3300030855\|Ga0075374_11252704	Not Available	550	Open in IMG/M
3300030916\|Ga0075386_10006575	Not Available	672	Open in IMG/M
3300030967\|Ga0075399_10370455	Not Available	511	Open in IMG/M
3300031231\|Ga0170824_112009419	Not Available	512	Open in IMG/M
3300031446\|Ga0170820_16179858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1051	Open in IMG/M
3300031544\|Ga0318534_10106675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1605	Open in IMG/M
3300031549\|Ga0318571_10038886	All Organisms → cellular organisms → Bacteria → Proteobacteria	1366	Open in IMG/M
3300031572\|Ga0318515_10167853	Not Available	1172	Open in IMG/M
3300031572\|Ga0318515_10336978	All Organisms → cellular organisms → Bacteria → Proteobacteria	809	Open in IMG/M
3300031573\|Ga0310915_10060216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2475	Open in IMG/M
3300031640\|Ga0318555_10257454	Not Available	943	Open in IMG/M
3300031713\|Ga0318496_10407711	All Organisms → cellular organisms → Bacteria → Proteobacteria	751	Open in IMG/M
3300031718\|Ga0307474_10487678	Not Available	966	Open in IMG/M
3300031744\|Ga0306918_10178419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1589	Open in IMG/M
3300031744\|Ga0306918_11017218	Not Available	643	Open in IMG/M
3300031751\|Ga0318494_10434320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	763	Open in IMG/M
3300031777\|Ga0318543_10446854	Not Available	579	Open in IMG/M
3300031780\|Ga0318508_1021552	All Organisms → cellular organisms → Bacteria → Proteobacteria	1570	Open in IMG/M
3300031833\|Ga0310917_10253519	Not Available	1184	Open in IMG/M
3300031833\|Ga0310917_10580470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	762	Open in IMG/M
3300031942\|Ga0310916_10156124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1886	Open in IMG/M
3300031945\|Ga0310913_10904940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	620	Open in IMG/M
3300031946\|Ga0310910_11403101	Not Available	537	Open in IMG/M
3300031959\|Ga0318530_10035872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1804	Open in IMG/M
3300031981\|Ga0318531_10111866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1208	Open in IMG/M
3300032009\|Ga0318563_10814694	Not Available	500	Open in IMG/M
3300032010\|Ga0318569_10622332	Not Available	503	Open in IMG/M
3300032043\|Ga0318556_10584282	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M
3300032044\|Ga0318558_10419413	Not Available	666	Open in IMG/M
3300032174\|Ga0307470_11532684	Not Available	555	Open in IMG/M
3300032261\|Ga0306920_100080031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4806	Open in IMG/M
3300033289\|Ga0310914_10052973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3353	Open in IMG/M
3300033290\|Ga0318519_10445601	All Organisms → cellular organisms → Bacteria → Proteobacteria	775	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.73%
Aquatic	Environmental → Aquatic	12.39%
Fungi	Host-Associated → Fungi	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.73%
Sediment	Environmental → Aquatic → Sediment	6.19%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.54%
Freshwater	Environmental → Aquatic → Freshwater	2.65%
Mycelium	Host-Associated → Fungi → Mycelium	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.75%
Loam	Environmental → Terrestrial → Soil → Loam	30.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.19%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.54%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.51%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.47%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.19%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.19%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.54%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.65%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.31%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.54%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.77%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.89%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300027003	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030855	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030967	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_103064151	3300001867	Forest Soil	MERFLLEGIVPVTRGRGEGRMKIYFLLMIVSVFVALSYIPIRAEPKQNPAASPDSVPA*
Ga0066395_1000063310	3300004633	Tropical Forest Soil	VERFLLEGMAPVTCGGGERLMKIYFLLMIVSVFVAISYIPIRIEQKQKPAASPDSVPVNA
Ga0066395_104224352	3300004633	Tropical Forest Soil	MAPVTCGRGEEPMKIYFLLMIVSVFVALSYIPVRVEPKQKPTARPDSVPA*
Ga0066395_110179672	3300004633	Tropical Forest Soil	LLERLVPVTCGGGEERMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPRDSVPA*
Ga0066672_108270481	3300005167	Soil	VERFLLEVGTPLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA*
Ga0066684_101104032	3300005179	Soil	LLEGITPVTCGRGEGLMKIYFLLMIVSVFVALSYIPIRVEPKNNRTSPPDSVPA*
Ga0066388_10000695012	3300005332	Tropical Forest Soil	MERFLLEGIAPVTRGRGKGLMKIYFLLMIVSVFVALSYIPIRAEPKQNPAAPPDSVPA*
Ga0066388_1000317015	3300005332	Tropical Forest Soil	VERFLLEGIAPVTRGRGEELMKIYFLLMIVSVFVALSYIPIRAEPKQNPAAPPDSVPA*
Ga0066388_1000832802	3300005332	Tropical Forest Soil	VRAICGGGQKLMKIYFLLMIVSVFVAFSYIPLRVEPKQTAAAPPDSMAA*
Ga0066388_1001149314	3300005332	Tropical Forest Soil	MAPVTCGRGEEPMKIYFLLMIVSVFVALSYIPVRVEPKQKPTARPIQYRRNA*
Ga0066388_1010813332	3300005332	Tropical Forest Soil	VERFLLERISPVTCGRGKELMKIYFLLMIVSVFVALSYIPIRAEPKQNPTAPPGSIPA*
Ga0066388_1014117781	3300005332	Tropical Forest Soil	VERFLLERIVPVTCGGGEEPMKIYFLLMIVSVFVALSYIPVRAEPKQNPTAAPDSLPA*
Ga0066388_1031374161	3300005332	Tropical Forest Soil	LLERIVPVNCGRGKELMKIYFLLMIVSVFVALSYIPIRAEPKQNPTAPPDSVPA*
Ga0008090_100602784	3300005363	Tropical Rainforest Soil	VERFLLERLVPVTCGGGEERMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPRDSVPA*
Ga0008090_102357471	3300005363	Tropical Rainforest Soil	VERFLLERIVPVTRGRGEGPMKIYFLLMIVSVFVALSYIPIRSEAKQNATAAPDSVPA*
Ga0070709_113303341	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LLEVGISLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA*
Ga0070714_1003600812	3300005435	Agricultural Soil	VERFLLEGMAPVTCGKGEGPMKIYFLLMIVGVFVALSYVPIRAEPKQNPAAPPDSVPA*
Ga0070713_1001319304	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VERFLLEVGISLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA*
Ga0070713_1003204582	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MERFLLEGIAPVTCGRGKGLMKIYFLLMIVSVFVALSYIPIRAEPKQNPAAPPDSVPA*
Ga0070710_101770042	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MERFLLEGIAPVTRGRGEGLMKIYFLLMIVSVFVALSYIPIRTEPKQNPAAPPDSVPA*
Ga0066670_104093582	3300005560	Soil	VERFLLEVGTPLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAVAPADSVRA*
Ga0066693_102731181	3300005566	Soil	LLEVGTPLICGGGDGLMKIYFLLMIISVFVAVSYIPIRIESKQKAAAPVDSVPA*
Ga0066903_1007452761	3300005764	Tropical Forest Soil	VTCGGGERLMKIYFLLMIVSVFVAISYIPIRIEQKQKPAASPDSLPVNA*
Ga0066903_1007772044	3300005764	Tropical Forest Soil	LKWVERFLLERIVPVTRGRGEGPMKIYFLLMIVSVFVALSYIPIRSEAKQNATAAPDSVPA*
Ga0066903_1013026253	3300005764	Tropical Forest Soil	VERFLLEGMAPVTCGGGERLMKIYFLLMIVSVFVAISYIPIRIEQKQKPAASPDSVPANA
Ga0066903_1040053092	3300005764	Tropical Forest Soil	VERFLLERIVPVTCGGGEGLMKIYFLLMIVSVFVALSYIPIRAEPKQNRPAAPDSIPA*
Ga0066903_1043328992	3300005764	Tropical Forest Soil	LKWVERFLLERIVPVTRGRGEGPMKIYFLLMIVSVFVALSYIPIRSEAKQNPTAAPDSVPA*
Ga0070766_104768001	3300005921	Soil	SCRANGRGHPKMKIYFLLMIISVFVGLSYIPIRTEAKQGVSKNAPSPDSVPA*
Ga0075023_1005579971	3300006041	Watersheds	MERFLLEGIVPVTRGRGEGRMKIYFLLMIVSVFVALSYIPIRAEPKQTPAASPDSVAA*
Ga0075024_1002538912	3300006047	Watersheds	MAPVTCGGGEGLMKIYFLLMIVSVFVALSYIPIRAEPKQTPAASPDSVAA*
Ga0075024_1006788382	3300006047	Watersheds	LLEVGTPLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA*
Ga0075026_1002758652	3300006057	Watersheds	MERFLLEGIVPVTRGRGEGLMKIYFLLMIVSVFVALSYIPIRAEPKQNPAAPPDSVPA*
Ga0075015_1008300312	3300006102	Watersheds	VERFLLERMAPVTCGGGEGLMKIYFLLMIVSVFVALSYIPIRAEPKQTPAASPDSVAA*
Ga0075018_105237451	3300006172	Watersheds	VERFLLEGMVPVTCGGGEGLMKIYFLLMIVSVFVALSYIPIRAEPKQNPAAPPDSVPA*
Ga0070716_1005890542	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VERFLLEVGISLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVTA*
Ga0070712_1005138232	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VERFLLEGMAPVTCGKGEGPMKIYFLLMIVSVFVALSYVPIRAEPKQNPAAPPDSVPA*
Ga0070765_1002355912	3300006176	Soil	VERFLLEVGTPLICGGGDGPMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA*
Ga0079222_126589211	3300006755	Agricultural Soil	MAPVTCGRGEGPMKIYFLLMIVSVFVALSYIPIRAKPEESRTSPDSVPA*
Ga0066659_114003022	3300006797	Soil	VERFLLEVGMPLSCGGGDGPMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA*
Ga0073928_104703622	3300006893	Iron-Sulfur Acid Spring	VERFLLEVGMLLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA*
Ga0073928_104887421	3300006893	Iron-Sulfur Acid Spring	LICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAEAPADSVPA*
Ga0126374_107179482	3300009792	Tropical Forest Soil	VERFLLERIVPVTCGGGEGLMKIYFLLMIVSVFVALSYIPIRAEAKQNPTAAPDSVPA*
Ga0126373_100119772	3300010048	Tropical Forest Soil	MAPVTCGGGERLMKIYFLLMIVSVFVAISYIPIRIEQKQKPAASPDSVPVNA*
Ga0126373_100683132	3300010048	Tropical Forest Soil	VERFLLEGLVPVTCGRGEGLMKIYFLLMIVSVFVALSYIPIRAEPKQNPAAPPDSVTA*
Ga0126370_124274181	3300010358	Tropical Forest Soil	WVERFLLERIVPVTRGRGEGPMKIYFLLMIVSVFVALSYIPIRSEAKQNPTAAPDSVPA*
Ga0126379_115834811	3300010366	Tropical Forest Soil	CGGGERLMKIYFLLMIVSVFVAISYIPIRIEQKQKPAAPPDSLPVNA*
Ga0126379_137110882	3300010366	Tropical Forest Soil	FLLEGIAPVTRGRGEELMKIYFLLMIVSVFVALSYIPIRAEPKQNPAAPPDSVPA*
Ga0126381_1000065344	3300010376	Tropical Forest Soil	VERFLLERIVPVTCGGGEEPMKIYFLLMIVSVFVALSYIPVRAEPKQNPKAAPDSLPA*
Ga0126381_1049688402	3300010376	Tropical Forest Soil	VERFLLERLVPVTCGRSEGRMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPPDSVPA*
Ga0126381_1050928152	3300010376	Tropical Forest Soil	KTVERFLLEGMAPVTCGGGERLMKIYFLLMIVSVFVAISYIPIRIEQKQKPAASPDSLPVNA*
Ga0124844_10252591	3300010868	Tropical Forest Soil	LERLVPVTCGGGEERMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPRDSVPA*
Ga0153922_11686061	3300012181	Attine Ant Fungus Gardens	MAPVICGKGEGPMKIYFLLMIVSFFVALSYIPIRAEPKQNPTAPPDSVPA*
Ga0137364_103867872	3300012198	Vadose Zone Soil	VERFLLEVGMPLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA*
Ga0126375_101186562	3300012948	Tropical Forest Soil	VERFLLERISPVTCGRGKELMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPRDSVPA*
Ga0182039_105685062	3300016422	Soil	VPVTCGRSEGRMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPPDSVPA
Ga0187802_1000010517	3300017822	Freshwater Sediment	MAPVTCGRGEGFMKIYFLLMIVSVFVALSYIPIRAEPKQTPAASPDSVPA
Ga0187824_103482562	3300017927	Freshwater Sediment	LLEGIAPVTCGRGEGPVKIYFLLMIVSVFVAFSYIPIRAEPKQKAAAPADSVPA
Ga0187809_103824181	3300017937	Freshwater Sediment	RFLLERMAPVTCGRGEGFMKIYFLLMIVSVFVALSYIPIRAEPKQTPAASPDSVPA
Ga0187777_111051891	3300017974	Tropical Peatland	MAPVTCGRGEGPMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPPDSVPA
Ga0066667_114240562	3300018433	Grasslands Soil	VERFLLEVGTPLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA
Ga0210407_108187182	3300020579	Soil	LLEVGMPLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA
Ga0210403_109658542	3300020580	Soil	MERFLLEGMVPVTCGRGEGPMKIYFLLMIVSVFVAFSYVPIRAEPKQTPAAPPDSVPA
Ga0210399_109968322	3300020581	Soil	VERFLLEVGMPLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA
Ga0210406_105908951	3300021168	Soil	MERFLLEGIVPVTRGRGEGLMKIYFLLMIVSVFVALSYIPIRAEPKQNPAAPPDSVPA
Ga0210384_112409961	3300021432	Soil	LLEVGTPLICGGGDGPMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA
Ga0126371_103061403	3300021560	Tropical Forest Soil	VERFLLEGMAPVTCGGGEGLMKIYFLLMIVSVFVAISYIPIRIEQKQKAAASPDSVPVNA
Ga0126371_136034351	3300021560	Tropical Forest Soil	VERFLLERMAPVTCGRGEEPMKIYFLLMIVSVFVALSYIPIRVEPKQKPTARPDSVPA
Ga0212123_104429492	3300022557	Iron-Sulfur Acid Spring	VERFLLEVGMLLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA
Ga0212123_104729402	3300022557	Iron-Sulfur Acid Spring	LLEVGTPLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAEAPADSVPA
Ga0207692_108593232	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VERFLLEGMAPVTCGRGEGPMKIYFLLMIVSVFVALSYVPIRAEPKQNPAAPPDSVPA
Ga0207693_110059242	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VERFSLEGMAPVTCGKGEGPMKIYFLLMIVSVFVALSYVPIRAEPKQNPAAPPDSVPA
Ga0207663_100431884	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MERFLLEGIAPVTCGRGKGLMKIYFLLMIVSVFVALSYIPIRAEPKQNPAAPPDSVPA
Ga0207663_104112052	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VERFLLEVGTPLIRGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA
Ga0207664_107551192	3300025929	Agricultural Soil	VERFLLEGMAPVTCGKGEGPMKIYFLLMIVGVFVALSYVPIRAEPKQNPAAPPDSVPA
Ga0209473_12477132	3300026330	Soil	LLEGITPVTCGRGEGLMKIYFLLMIVSVFVALSYIPIRVEPKNNRTSPPDSVPA
Ga0207722_10215082	3300027003	Tropical Forest Soil	LLVSIVPVTCDRGEGLMKIYFLLMIVSVFVAISYIPIRIEQKQKPAASPDSVPVNA
Ga0209465_105213722	3300027874	Tropical Forest Soil	RFFKAVERFLLERMAPVTCGRGEEPMKIYFLLMIVSVFVALSYIPVRVEPKQKPTARPDSVPA
Ga0209590_106382152	3300027882	Vadose Zone Soil	VERFLLEVGTPLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKPAAPADSVPA
Ga0209069_103333782	3300027915	Watersheds	FKAVERFLLEGMVPVTCGRGEGLMKIYFLLMIVSVFVAFSYVPIRAEPKQTPAAPPDSVP
Ga0209526_103885112	3300028047	Forest Soil	VERFLLEVGTPLICGGGDGPMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA
Ga0075374_112527042	3300030855	Soil	LLEVGMPLSCGGGDGPMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA
Ga0075386_100065752	3300030916	Soil	VERFLLEVGTPLICGGSDGPMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA
Ga0075399_103704552	3300030967	Soil	LLEVGMSLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA
Ga0170824_1120094192	3300031231	Forest Soil	LLEVGTPLICGGSDGPMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA
Ga0170820_161798582	3300031446	Forest Soil	VERFLLEVGMSLICGGGDGLMKIYFLLMIVSVFVAVSYIPIRIESKQKAAAPADSVPA
Ga0318534_101066753	3300031544	Soil	MAPVTCGGGERLMKIYFLLMIVSVFVAISYIPIRIEQKQKPAASPDSVPVNA
Ga0318571_100388863	3300031549	Soil	NRVECFLLEVRVRAICGGGQKLMKIYFLLMIVSVFVAFSYIPLRVEPKQTAAAPPDSMAA
Ga0318515_101678531	3300031572	Soil	VERFLLERLVPVTCGRSEGRMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPPDSV
Ga0318515_103369782	3300031572	Soil	SIVPVTCDRGEGLMKIYFLLMIVSVFVALSYIPIRAQPKQNPAAPPDSVPA
Ga0310915_100602162	3300031573	Soil	VERFLLESIVPVTCDRGEGLMKIYFLLMIVSVFVALSYIPIRAEPKQKPAAPPDSVPA
Ga0318555_102574542	3300031640	Soil	VERFLLESIVPVTCDRGEGLMKIYFLLMIVSVFVALSYIPIRAEPKQNPAAPPDSVPA
Ga0318496_104077112	3300031713	Soil	VERFLLERLVPVTCGRSEERMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPRDSVPA
Ga0307474_104876782	3300031718	Hardwood Forest Soil	VERFLLEGTVPVTCGRGEGPMKIYFLLMIVSVFVALSYIPIRAEPKQNPAAPPDSVPA
Ga0306918_101784194	3300031744	Soil	KAVERFLLERMAPVTCGRGEEPMKIYFLLMIVSVFVALSYIPIRVEPKQKPTARPDSVPA
Ga0306918_110172182	3300031744	Soil	LLERLVPVTCGRSEERMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPRDSVPA
Ga0318494_104343201	3300031751	Soil	RLVPVTCGRSEGRMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPPDSVPA
Ga0318543_104468542	3300031777	Soil	VERFLLERLVPVTCGRSEERMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPPDSVPA
Ga0318508_10215523	3300031780	Soil	FLLEVRVRAICGGGQKLMKIYFLLMIVSVFVAFSYIPLRVEPKQTAAAPPDSMAA
Ga0310917_102535191	3300031833	Soil	VERFLLERLVPVTCGRSEGRMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPPDSVP
Ga0310917_105804702	3300031833	Soil	RLVPITCGRSEERMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPRDSVPA
Ga0310916_101561241	3300031942	Soil	IVPVTCDRGEGLMKIYFLLMIVSVFVALSYIPIRAQPKQNPAAPPDSVPA
Ga0310913_109049402	3300031945	Soil	RMAPVTCGRGEEPMKIYFLLMIVSVFVALSYIPIRVEPKQKPTARPDSVPA
Ga0310910_114031012	3300031946	Soil	LLERLVPITCGRSEERMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPRDSVPA
Ga0318530_100358721	3300031959	Soil	LVSIVPVTCDRGEGLMKIYFLLMIVSVFVALSYIPIRAQPKQNPAAPPDSVPA
Ga0318531_101118661	3300031981	Soil	VPVTCGRSEERMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPRDSVPA
Ga0318563_108146941	3300032009	Soil	VERFLLERLVPVTCGRSEGRMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPRDSVPA
Ga0318569_106223322	3300032010	Soil	LLERLVPVTCGRGEERMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPRDSVPA
Ga0318556_105842821	3300032043	Soil	VPVTCDRGEGLMKIYFLLMIVSVFVALSYIPIRAEPKQKPAAPPDSVPA
Ga0318558_104194132	3300032044	Soil	VERFLLERLVPVTCGRSEGRMKIYFLLMIVSVFVALSYIPIRAEAKQNPAAPPDSVPA
Ga0307470_115326841	3300032174	Hardwood Forest Soil	MERFLLEGIVPVTCGRGEGRMKIYFLLMIVSVFVALSYIPIRAEPKQNPAAPPDSVPA
Ga0306920_1000800312	3300032261	Soil	VERFLLESIVPVTCDRGEGLMKIYFLLMIVSVFVALSYIPIRAEPKQNPAAPPVSVPA
Ga0310914_100529732	3300033289	Soil	MAPVTCGRGEEPMKIYFLLMIVSVFVALSYIPIRVEPKQKPTARPDSVPA
Ga0318519_104456012	3300033290	Soil	LLERMAPVTCGRGEEPMKIYFLLMIVSVFVALSYIPIRVEPKQKPTARPDSVPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083190

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences