Metagenome / Metatranscriptome Family F083068

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083068
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	59 residues
Representative Sequence	MYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLRLPGTW
Number of Associated Samples	86
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.64 %
% of genes near scaffold ends (potentially truncated)	38.94 %
% of genes from short scaffolds (< 2000 bps)	89.38 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (59.292 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (17.699 % of family members)
Environment Ontology (ENVO)	Unclassified (53.982 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (76.106 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 74.14% β-sheet: 0.00% Coil/Unstructured: 25.86%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00294	PfkB	3.54
PF00872	Transposase_mut	3.54
PF09250	Prim-Pol	1.77
PF06081	ArAE_1	0.88
PF01638	HxlR	0.88
PF05368	NmrA	0.88
PF08281	Sigma70_r4_2	0.88
PF00710	Asparaginase	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	3.54
COG0252	L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D	Translation, ribosomal structure and biogenesis [J]	1.77
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.88
COG4129	Uncharacterized membrane protein YgaE, UPF0421/DUF939 family	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.29 %
All Organisms	root	All Organisms	40.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.29 %
cellular organisms	root	All Organisms → cellular organisms	40.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.29 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.29 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	38.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.29 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	38.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.29 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	37.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.29 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	13.27 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.65 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.29 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	12.39 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.77 %
Actinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.29 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	6.19 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.77 %
Actinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.29 %
unclassified Mycobacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium	4.42 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.77 %
Actinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.29 %
Mycobacterium sp. ITM-2016-00317	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. ITM-2016-00317	3.54 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.77 %
Mycobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp.	0.88 %
Actinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0773339	Not Available	1175	Open in IMG/M
3300005333\|Ga0070677_10418940	Not Available	710	Open in IMG/M
3300005334\|Ga0068869_101444713	Not Available	610	Open in IMG/M
3300005337\|Ga0070682_100795689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	768	Open in IMG/M
3300005337\|Ga0070682_101344524	Not Available	609	Open in IMG/M
3300005338\|Ga0068868_100344229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1275	Open in IMG/M
3300005338\|Ga0068868_101866393	Not Available	569	Open in IMG/M
3300005341\|Ga0070691_10469845	Not Available	722	Open in IMG/M
3300005347\|Ga0070668_100738591	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300005353\|Ga0070669_100662998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	878	Open in IMG/M
3300005356\|Ga0070674_100149620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1760	Open in IMG/M
3300005365\|Ga0070688_100203746	Not Available	1385	Open in IMG/M
3300005436\|Ga0070713_102157769	Not Available	540	Open in IMG/M
3300005437\|Ga0070710_10162292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1387	Open in IMG/M
3300005437\|Ga0070710_10366564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. ITM-2016-00317	957	Open in IMG/M
3300005438\|Ga0070701_11009264	Not Available	581	Open in IMG/M
3300005439\|Ga0070711_100158987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1711	Open in IMG/M
3300005439\|Ga0070711_101120687	Not Available	678	Open in IMG/M
3300005440\|Ga0070705_100796088	Not Available	752	Open in IMG/M
3300005441\|Ga0070700_101916984	Not Available	512	Open in IMG/M
3300005444\|Ga0070694_100729724	Not Available	808	Open in IMG/M
3300005545\|Ga0070695_101650987	Not Available	536	Open in IMG/M
3300005546\|Ga0070696_100423555	Not Available	1046	Open in IMG/M
3300005548\|Ga0070665_101398373	Not Available	709	Open in IMG/M
3300005549\|Ga0070704_100124953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1983	Open in IMG/M
3300005563\|Ga0068855_101361334	Not Available	733	Open in IMG/M
3300005578\|Ga0068854_100304989	Not Available	1289	Open in IMG/M
3300005719\|Ga0068861_102063635	Not Available	569	Open in IMG/M
3300005842\|Ga0068858_100537824	Not Available	1131	Open in IMG/M
3300005843\|Ga0068860_101198412	Not Available	779	Open in IMG/M
3300005844\|Ga0068862_101455311	Not Available	689	Open in IMG/M
3300006175\|Ga0070712_100148779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1795	Open in IMG/M
3300006175\|Ga0070712_101043195	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300006358\|Ga0068871_102103632	Not Available	538	Open in IMG/M
3300009092\|Ga0105250_10013700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3341	Open in IMG/M
3300009098\|Ga0105245_10803726	Not Available	978	Open in IMG/M
3300009101\|Ga0105247_10334440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1060	Open in IMG/M
3300009101\|Ga0105247_10530144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	863	Open in IMG/M
3300009174\|Ga0105241_10109005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. ITM-2016-00317	2214	Open in IMG/M
3300009176\|Ga0105242_10188803	Not Available	1823	Open in IMG/M
3300009177\|Ga0105248_10528421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1330	Open in IMG/M
3300009177\|Ga0105248_11229620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	847	Open in IMG/M
3300009551\|Ga0105238_11643551	Not Available	673	Open in IMG/M
3300009553\|Ga0105249_10584383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1170	Open in IMG/M
3300010371\|Ga0134125_10462220	Not Available	1407	Open in IMG/M
3300010373\|Ga0134128_10358143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1630	Open in IMG/M
3300010373\|Ga0134128_11989420	Not Available	640	Open in IMG/M
3300010373\|Ga0134128_12367009	Not Available	585	Open in IMG/M
3300010396\|Ga0134126_10943196	Not Available	969	Open in IMG/M
3300010396\|Ga0134126_11430689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	763	Open in IMG/M
3300010397\|Ga0134124_11962993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	622	Open in IMG/M
3300010399\|Ga0134127_12056719	Not Available	649	Open in IMG/M
3300010400\|Ga0134122_10420662	Not Available	1186	Open in IMG/M
3300010403\|Ga0134123_10359214	Not Available	1319	Open in IMG/M
3300012957\|Ga0164303_10411668	Not Available	838	Open in IMG/M
3300012957\|Ga0164303_10639859	Not Available	707	Open in IMG/M
3300012958\|Ga0164299_10433263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	855	Open in IMG/M
3300012958\|Ga0164299_10629213	Not Available	739	Open in IMG/M
3300012985\|Ga0164308_11954307	Not Available	547	Open in IMG/M
3300012988\|Ga0164306_10289402	Not Available	1191	Open in IMG/M
3300012988\|Ga0164306_10585454	Not Available	872	Open in IMG/M
3300012989\|Ga0164305_10057799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2306	Open in IMG/M
3300013297\|Ga0157378_10099530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	2653	Open in IMG/M
3300013306\|Ga0163162_10179836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	2241	Open in IMG/M
3300013306\|Ga0163162_10226108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2001	Open in IMG/M
3300013306\|Ga0163162_10427113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp.	1457	Open in IMG/M
3300013306\|Ga0163162_12287469	Not Available	621	Open in IMG/M
3300013306\|Ga0163162_13204589	Not Available	525	Open in IMG/M
3300013307\|Ga0157372_10487790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. ITM-2016-00317	1437	Open in IMG/M
3300014968\|Ga0157379_10135969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2214	Open in IMG/M
3300015374\|Ga0132255_102916577	Not Available	731	Open in IMG/M
3300017792\|Ga0163161_10116682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2002	Open in IMG/M
3300017792\|Ga0163161_11293545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	634	Open in IMG/M
3300018465\|Ga0190269_11237009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	590	Open in IMG/M
3300025893\|Ga0207682_10446344	Not Available	612	Open in IMG/M
3300025898\|Ga0207692_10814263	Not Available	611	Open in IMG/M
3300025898\|Ga0207692_11198513	Not Available	504	Open in IMG/M
3300025899\|Ga0207642_10615629	Not Available	677	Open in IMG/M
3300025901\|Ga0207688_10051445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2307	Open in IMG/M
3300025901\|Ga0207688_10532200	Not Available	738	Open in IMG/M
3300025903\|Ga0207680_11201632	Not Available	541	Open in IMG/M
3300025915\|Ga0207693_10578199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	875	Open in IMG/M
3300025916\|Ga0207663_10897015	Not Available	709	Open in IMG/M
3300025919\|Ga0207657_10065959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. ITM-2016-00317	3083	Open in IMG/M
3300025924\|Ga0207694_10294298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1335	Open in IMG/M
3300025924\|Ga0207694_10349637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	1223	Open in IMG/M
3300025927\|Ga0207687_11525866	Not Available	574	Open in IMG/M
3300025929\|Ga0207664_11924391	Not Available	514	Open in IMG/M
3300025933\|Ga0207706_10674864	Not Available	884	Open in IMG/M
3300025933\|Ga0207706_10763977	Not Available	823	Open in IMG/M
3300025935\|Ga0207709_10035195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2959	Open in IMG/M
3300025937\|Ga0207669_11472052	Not Available	580	Open in IMG/M
3300025949\|Ga0207667_10780115	Not Available	954	Open in IMG/M
3300025949\|Ga0207667_11777526	Not Available	581	Open in IMG/M
3300025972\|Ga0207668_10382470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1185	Open in IMG/M
3300025972\|Ga0207668_11215184	Not Available	677	Open in IMG/M
3300026041\|Ga0207639_10359438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1303	Open in IMG/M
3300026075\|Ga0207708_11426753	Not Available	608	Open in IMG/M
3300026121\|Ga0207683_10389162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1282	Open in IMG/M
3300028379\|Ga0268266_10560810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1095	Open in IMG/M
3300028380\|Ga0268265_10310517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1424	Open in IMG/M
3300028380\|Ga0268265_11796967	Not Available	619	Open in IMG/M
3300028381\|Ga0268264_10820298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	930	Open in IMG/M
3300028381\|Ga0268264_12081760	Not Available	576	Open in IMG/M
3300030336\|Ga0247826_10189672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1396	Open in IMG/M
3300031198\|Ga0307500_10292909	Not Available	515	Open in IMG/M
3300032000\|Ga0310903_10575546	Not Available	597	Open in IMG/M
3300032012\|Ga0310902_10232154	Not Available	1101	Open in IMG/M
3300032012\|Ga0310902_11168362	Not Available	541	Open in IMG/M
3300034671\|Ga0314796_054152	Not Available	774	Open in IMG/M
3300034676\|Ga0314801_199407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	511	Open in IMG/M
3300034817\|Ga0373948_0138305	Not Available	601	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	54.87%
Environmental	Environmental	45.13%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	54.87%
Terrestrial	Environmental → Terrestrial	45.13%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.13%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.20%
Rhizoplane	Host-Associated → Plants → Rhizoplane	24.78%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	23.01%
Loam	Environmental → Terrestrial → Soil → Loam	21.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.04%
Soil	Host-Associated → Plants → Rhizosphere → Soil	14.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	23.01%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	21.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	14.16%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	17.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	8.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.08%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.08%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	5.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.65%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300034671	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034676	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_07733392	3300000033	Soil	MSTLMYSFRRRTRDAELARLRAENAEMRSRIGRLDEENAVLRDRLKEMSSFKRTPLRLPGTW*
Ga0070677_104189401	3300005333	Miscanthus Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLRLPGTW*
Ga0068869_1014447132	3300005334	Miscanthus Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLDEMSSFKRTPLRLPGTW*
Ga0070682_1007956892	3300005337	Corn Rhizosphere	MSTLMYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMTSYKHTPLRLPGTW*
Ga0070682_1013445242	3300005337	Corn Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKHTPLRLPGTW*
Ga0068868_1003442292	3300005338	Miscanthus Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW*
Ga0068868_1018663931	3300005338	Miscanthus Rhizosphere	MYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW*
Ga0070691_104698451	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLRLPGTW*
Ga0070668_1007385913	3300005347	Switchgrass Rhizosphere	STLMYSFRRRTRDAELARLRAENAEMRSRIGRLDEENAVLRDRLKEMSSFKRTPLRLPGTW*
Ga0070669_1006629983	3300005353	Switchgrass Rhizosphere	ELSRLRAENAEMRSRIGRLVEEKAVLRDRLDEMSSFKRTPLRLPGTW*
Ga0070671_1003274231	3300005355	Switchgrass Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTWSSSKGHCQLEVVLDVMLIT
Ga0070674_1001496203	3300005356	Miscanthus Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLLDRLEEMSSFKRTPLPLPGTW*
Ga0070688_1002037463	3300005365	Switchgrass Rhizosphere	MGAGDPLTFKYSFRRRARDAELARLRAANAEMRARIGRLVEEKAVLRDRLKEMSSFKRTPLRLPGTW*
Ga0070713_1021577691	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLDEMSSFKRTPLPLPGTW*
Ga0070710_101622921	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	KRQRHSWRWGTHRSTDKGTRSTLMYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW*
Ga0070710_103665642	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	SFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW*
Ga0070701_110092642	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MTTTWMERGDPLTFMYSFRRRARDAELARLRAANAEMRARIGRLVEEKAVLRDRPKEMSSFKRTPLRLPGTW*
Ga0070711_1001589871	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLDETSSFKRTPLPLPGTW*
Ga0070711_1011206872	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLRLPGTW*
Ga0070705_1007960882	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MYSFRRRARDAELARLRAANAEMRARIGRLVEEKAVLRDRPKEMSSFKRTPLRLPGTW*
Ga0070700_1019169841	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MSTLMYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLRLPGTW*SSSKGIL
Ga0070694_1007297241	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MSTLMYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLRLPGTW*
Ga0070695_1016509872	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFK
Ga0070696_1004235552	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSTLMYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW*
Ga0070665_1013983732	3300005548	Switchgrass Rhizosphere	MYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKHTPLRLPGTW*
Ga0070704_1001249531	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MYSFRRRARDAELARLRAANAEMRARIGRLVEEKAVLRDRLKEMSSFKRTPLRLPGTW*
Ga0068855_1013613342	3300005563	Corn Rhizosphere	MYSFRRRTRDAELARLRAENAEMRSRIGRLDEENAVLRDRLKEMSSFKRTPLRLPGTW*
Ga0068854_1003049892	3300005578	Corn Rhizosphere	MYSFRRCTRNAELARLRTENAEMRSRIGRLVEEKAVLRDRLEEMSSFKHTPLRLPGTW*
Ga0068861_1020636351	3300005719	Switchgrass Rhizosphere	STLMYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLRLPGTW*
Ga0068858_1005378241	3300005842	Switchgrass Rhizosphere	MSTLIYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW*
Ga0068860_1011984121	3300005843	Switchgrass Rhizosphere	QHDTPDSQATGTRSTLMYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW*
Ga0068862_1014553112	3300005844	Switchgrass Rhizosphere	RRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW*
Ga0070712_1001487794	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	STLMYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW*
Ga0070712_1010431951	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	TQGLPLTAPYSFRRRTRDAELARLRTENAEMRSRIGRLAEEKAVLSDRLEEISSFKHTPLRLPGTW*
Ga0068871_1021036321	3300006358	Miscanthus Rhizosphere	MYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEISSFKHTPLRLPGTW*
Ga0105250_100137004	3300009092	Switchgrass Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPVRLPGTW*
Ga0105245_108037261	3300009098	Miscanthus Rhizosphere	MSTLMYSLRRRTRDAELARLRAENAEMRSRIGRLVEENAVLRDRLKEMSSFKRTPLRLPGTW*
Ga0105247_103344401	3300009101	Switchgrass Rhizosphere	MYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMTSYKHTPLRLPGTW*
Ga0105247_105301441	3300009101	Switchgrass Rhizosphere	MYSFRRRDAELARLRTENAEMRSRIGRLVEEKAVLRDRLEEMSSFKH
Ga0105241_101090051	3300009174	Corn Rhizosphere	MYSFRRRTRDAELARLRAENAEMRSRVGRLVEEKAVLRDRLDEMSSFKRTPLRLPGTW*
Ga0105242_101888032	3300009176	Miscanthus Rhizosphere	MYSFRRRTRDAELSPLRAENAEMRSRIGRLVEEKTVLLDRLEEMSSFKRTPLPLPGTW*
Ga0105248_105284211	3300009177	Switchgrass Rhizosphere	FRRRARDAELARLRAANAEMRARIGRLVEEKAVLRDRLKEMSSFKRTPLRLPGTW*
Ga0105248_112296201	3300009177	Switchgrass Rhizosphere	MYSFRRRIRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMTSYKHTPLRLPGTW*
Ga0105238_116435512	3300009551	Corn Rhizosphere	MSTLMYSLRRRTRDAELARLRAENAEMRSRIGRLDEENAVLRDRLKEMSSFKRTPLRLPGTW*
Ga0105249_105843833	3300009553	Switchgrass Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRT
Ga0134125_104622201	3300010371	Terrestrial Soil	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEAKTVLLDRLEEMSSFKRTPLPLPGTW*
Ga0134128_103581431	3300010373	Terrestrial Soil	MSTLRYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMTSYKHTPLRLPGTW*
Ga0134128_119894202	3300010373	Terrestrial Soil	MYSFRRCTRYAELARPRTENAEMRSRIGRLVEEKAVLRDRLEEMTSFKHTPLRLPGTW*
Ga0134128_123670091	3300010373	Terrestrial Soil	AELSRLRAENAEMRSRIGRLVEEKAVLLDRLEEMSSFKRTPLPLPGTW*
Ga0134126_109431962	3300010396	Terrestrial Soil	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDGLEEMSSFKRTPLPLPGTW*
Ga0134126_114306891	3300010396	Terrestrial Soil	MYSFRRCTRDAELARLRTENAEMRSRIGRLAEEKAVLSDRLEEISSFKHTPLRLP
Ga0134124_119629932	3300010397	Terrestrial Soil	SFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMTSYKHTPLRLPGTW*
Ga0134127_120567192	3300010399	Terrestrial Soil	MYSFRRRTRDAELSRLRAENAEIRSRIGRLVEEKAVLRDRLDEMSSFKRTPLPLPGTW*
Ga0134122_104206621	3300010400	Terrestrial Soil	MYSFRRRTRDAELARLRAENAEMRSRVGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW*
Ga0134123_103592141	3300010403	Terrestrial Soil	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLDDMSSFKRTPLRLPGSW*
Ga0164303_104116681	3300012957	Soil	MYSFRRRTRDAELARLRAENAEMRSRINRLVEEKAVLRDRLEEMSSFKRTPLRLPGTW*
Ga0164303_106398591	3300012957	Soil	MYSFRRCTRDFYHDRLPTENAEMRSRIGRLVEEKAVLRDRLEEMTSFKHTPLRLPGTW*
Ga0164299_104332632	3300012958	Soil	FRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMTSYKHTPLRLPGTW*
Ga0164299_106292132	3300012958	Soil	MYSFRRRTRDAELARLRAENAEMRSRVGRLVEEKAVLRDRLEEMSSFKRTPLPL
Ga0164308_119543072	3300012985	Soil	MSTLMYSFRRRTRDAELARLRAENAEMRSRINRLVEEKAVLRDRLEEMSSFKRTPLRLPGTW*
Ga0164306_102894022	3300012988	Soil	MTAPYSFRRRTRDAELARLRTENAEMRSRIGRLVEEKAVLRDRLEEMSSFKHTPLRLPGTW*
Ga0164306_105854541	3300012988	Soil	MYSFRRRTRDAELSRLSAENAEMRSRIGRLVEEKAVLRDRLDETSSFKRTPLPLPGTW*
Ga0164305_100577995	3300012989	Soil	MYSFRRCTRNAELARLRTENAEMRSRIGRLVEEKAVLRDRLEEMTSFKHTPLRLPGTW*
Ga0157378_100995301	3300013297	Miscanthus Rhizosphere	MSPLIYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMTSYKHTPLRLPGTW*
Ga0163162_101798365	3300013306	Switchgrass Rhizosphere	MSTLMYSFRRRTRDAELARLRAENAEMRSRINRLVEEKAVLHDRLEEMSSFKRTPLRLPGTW*
Ga0163162_102261084	3300013306	Switchgrass Rhizosphere	MYSFRRCTRDAELARLRTENAEMRSRIGRLVEEKAVLRDRLEEMTSFKHTPLRLPGTW*
Ga0163162_104271131	3300013306	Switchgrass Rhizosphere	RRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMTSYKHTPLRLPGTW*
Ga0163162_122874692	3300013306	Switchgrass Rhizosphere	RDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW*
Ga0163162_132045891	3300013306	Switchgrass Rhizosphere	PMSTLMYSFRRRTRDAELARLRAENAEMRSRIGRLDEENAVLRDRLKEMSSFKRTPLRLPGTW*
Ga0157372_104877903	3300013307	Corn Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLDEMSSFKRTPLPLRGTW*
Ga0157379_101359694	3300014968	Switchgrass Rhizosphere	YSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLDEMSSFKRTPLPLPGTW*
Ga0132255_1029165771	3300015374	Arabidopsis Rhizosphere	MSTLMYSLRRRTRDAELARLRAENAEMRSRIGRLVEENAVLRDRLKEMSSFKRTPLRLLGTW*
Ga0163161_101166821	3300017792	Switchgrass Rhizosphere	TRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW
Ga0163161_112935452	3300017792	Switchgrass Rhizosphere	MYSFRRCTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKHTPLRLPGTW
Ga0190269_112370091	3300018465	Soil	AAGTRSTLMYSFRRRTCDAELSRLRAENAEMRSRIGRLVEENAVLRDRLDEMSSFKRTPLPLPGTW
Ga0207682_104463441	3300025893	Miscanthus Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW
Ga0207692_108142631	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	HRSTDKGTRSTLMYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW
Ga0207692_111985131	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	TPDSQATGTRSTLMYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW
Ga0207642_106156292	3300025899	Miscanthus Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEEAVLRDRLDEMSSFKRTPLPLPGTW
Ga0207688_100514455	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MYSFRRRARDAELARLRAANAEMRARIGRLVEEKAVLRDRLKEMSSFKRTPLRLPGTW
Ga0207688_105322002	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLDEMSSFKRTPLRLPGTW
Ga0207680_112016321	3300025903	Switchgrass Rhizosphere	MSTLMYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMTSYKHTPLRLPGTW
Ga0207693_105781991	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMTSYKHTPLRLPGTW
Ga0207663_108970152	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LEAGGPMSTLMYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLRLPGTW
Ga0207657_100659596	3300025919	Corn Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEGMSSFKRTPLRLPGTW
Ga0207694_102942981	3300025924	Corn Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLDETSSFKRTPL
Ga0207694_103496372	3300025924	Corn Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLRLPGTW
Ga0207687_115258661	3300025927	Miscanthus Rhizosphere	MSTLMYSLRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMTSYKHTPLRLPGTW
Ga0207664_119243911	3300025929	Agricultural Soil	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLDEMSSFKRTPLPLPGTW
Ga0207706_106748641	3300025933	Corn Rhizosphere	MYSFRRRARDAELARLRAANAEMRARIGRLVEEKAVLRDRLKEMSSFKR
Ga0207706_107639771	3300025933	Corn Rhizosphere	MSTLMYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMTSYKHTPLRLPG
Ga0207709_100351953	3300025935	Miscanthus Rhizosphere	MYSFRRRARDAELARLRAANAEMRARIGRLVEEKAVLRDRPKEMSSFKRTPLRLPGTW
Ga0207669_114720522	3300025937	Miscanthus Rhizosphere	DAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW
Ga0207667_107801151	3300025949	Corn Rhizosphere	MYSFRRRIRDAELARLRAENAEMRSRIGRLDEENAVLRDRLKEMSSFKRTPLRLPGTW
Ga0207667_117775261	3300025949	Corn Rhizosphere	QATGTRSTLMYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLDETSSFKRTPLPLPGTW
Ga0207668_103824702	3300025972	Switchgrass Rhizosphere	MSTLMYSFRRRTRDAELARLRAENAEMRSRIGRLDEENAVLRDRLKEMSSFKRTPLRLPGTW
Ga0207668_112151842	3300025972	Switchgrass Rhizosphere	MSTLIYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW
Ga0207639_103594381	3300026041	Corn Rhizosphere	STLMYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGT
Ga0207708_114267531	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MSTLMYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLRLPGTW
Ga0207683_103891622	3300026121	Miscanthus Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPVRLPGTW
Ga0268266_105608102	3300028379	Switchgrass Rhizosphere	FMYSFRRRARDAELARLRAANAEMRARIGRLVEEKAVLRDRLKEMSSFKRTPLRLPGTW
Ga0268265_103105172	3300028380	Switchgrass Rhizosphere	MYSFRRCTRNAELARLRTENAEMRSRIGRLVEEKAVLRDRLEEMTSFKHTPLRLPGTW
Ga0268265_117969671	3300028380	Switchgrass Rhizosphere	MSTLIYSFRRRTRDAELARLRAENAEMRSRIGRLDEENAVLRDRLKEMSSFKRTPLRLPGTW
Ga0268264_108202982	3300028381	Switchgrass Rhizosphere	ARDAELARLRAANAEMRARIGRLVEEKAVLRDRLKEMSSFKRTPLRLPGTW
Ga0268264_120817601	3300028381	Switchgrass Rhizosphere	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTP
Ga0247826_101896721	3300030336	Soil	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLDEMSSFKRTP
Ga0307500_102929091	3300031198	Soil	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKAVLRDRLDEMSSFKRTPVRLPGTW
Ga0310903_105755462	3300032000	Soil	MYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKAVLRDRLEEMSSFKRTPLPLPGTW
Ga0310902_102321541	3300032012	Soil	ATGTRSTLMYSFRRRTRDAELSRLRAENAEMRSRIGRLVEEKTVLLDRLEEMSSFKRTPLPLPGTW
Ga0310902_111683622	3300032012	Soil	MYSFRRCTRNAELARLRTENAEMRFRIGRLVEEKAVLRDRLEEMSSFKHTPLRLPGTW
Ga0314796_054152_417_593	3300034671	Soil	MYSFRRRTRDAELSRLRAENAEMRSRIGRLVKEKAVLRDRLEEMSSFKRTPLPLPGTW
Ga0314801_199407_262_438	3300034676	Soil	MYSFRRRTRDAELARLRAENAEMRSRIGRLVEEKDVLRDRLEEMTSYKHTPMRLPATW
Ga0373948_0138305_138_314	3300034817	Rhizosphere Soil	MYSFRRCTRNAELARLRTENAEMRSRIGRLVEEKAVLRDRLEEMSSFKHTPLRLPGTW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083068

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences