Metagenome / Metatranscriptome Family F083045

Basic Information
Family ID	F083045
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	40 residues
Representative Sequence	MKTKTFAGALVGSLLMATALTPVRAADMTNERALNPQREP
Number of Associated Samples	92
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.23 %
% of genes near scaffold ends (potentially truncated)	98.23 %
% of genes from short scaffolds (< 2000 bps)	94.69 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Most Common Taxonomy
Group	Bacteria (65.487 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (18.584 % of family members)
Environment Ontology (ENVO)	Unclassified (30.088 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.407 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 44.12% β-sheet: 0.00% Coil/Unstructured: 55.88%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13570	PQQ_3	30.09
PF13360	PQQ_2	11.50
PF01011	PQQ	7.96
PF01618	MotA_ExbB	2.65
PF03328	HpcH_HpaI	1.77
PF00890	FAD_binding_2	1.77
PF14659	Phage_int_SAM_3	0.88
PF09084	NMT1	0.88
PF14294	DUF4372	0.88
PF04392	ABC_sub_bind	0.88
PF01904	DUF72	0.88
PF03150	CCP_MauG	0.88
PF01810	LysE	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	1.77
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	1.77
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	1.77
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.88
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.88
COG1858	Cytochrome c peroxidase	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.88
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.49 %
Unclassified	root	N/A	34.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.49 %
Unclassified	root	N/A	34.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.49 %
Unclassified	root	N/A	34.51 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	48.67 %
Unclassified	root	N/A	34.51 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.77 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	44.25 %
Unclassified	root	N/A	34.51 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.77 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	21.24 %
Sneathiellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales	6.19 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
unclassified Sneathiellales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → unclassified Sneathiellales	6.19 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4.42 %
Alsobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae	2.65 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.88 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.88 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
Sneathiellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → unclassified Sneathiellales → Sneathiellales bacterium	6.19 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	4.42 %
Alsobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	2.65 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	1.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.88 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.88 %
Chelativorans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans	0.88 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
Sneathiellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → unclassified Sneathiellales → Sneathiellales bacterium	6.19 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	3.54 %
unclassified Alsobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter → unclassified Alsobacter	2.65 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
unclassified Chelativorans	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans	0.88 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.88 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.88 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
Sneathiellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → unclassified Sneathiellales → Sneathiellales bacterium	6.19 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3.54 %
Alsobacter sp. SYSU M60028	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter → unclassified Alsobacter → Alsobacter sp. SYSU M60028	2.65 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
Chelativorans sp. J32	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. J32	0.88 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.88 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.88 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101527348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → unclassified Sneathiellales → Sneathiellales bacterium	563	Open in IMG/M
3300004091\|Ga0062387_100978029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300004092\|Ga0062389_102611594	Not Available	672	Open in IMG/M
3300004092\|Ga0062389_103016803	Not Available	630	Open in IMG/M
3300004635\|Ga0062388_101802931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	628	Open in IMG/M
3300005332\|Ga0066388_100278233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2316	Open in IMG/M
3300005332\|Ga0066388_100880323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1477	Open in IMG/M
3300005332\|Ga0066388_108545405	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300005436\|Ga0070713_101323653	All Organisms → cellular organisms → Bacteria → Proteobacteria	698	Open in IMG/M
3300005439\|Ga0070711_101407209	Not Available	607	Open in IMG/M
3300005555\|Ga0066692_10509581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. J32	765	Open in IMG/M
3300005764\|Ga0066903_103028249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	910	Open in IMG/M
3300005764\|Ga0066903_106816204	Not Available	593	Open in IMG/M
3300006057\|Ga0075026_100965798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300006175\|Ga0070712_100826508	Not Available	796	Open in IMG/M
3300006176\|Ga0070765_100618281	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300006176\|Ga0070765_101709716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → unclassified Sneathiellales → Sneathiellales bacterium	591	Open in IMG/M
3300007265\|Ga0099794_10431778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	690	Open in IMG/M
3300007788\|Ga0099795_10070417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	1318	Open in IMG/M
3300007788\|Ga0099795_10290086	Not Available	717	Open in IMG/M
3300007788\|Ga0099795_10399975	Not Available	624	Open in IMG/M
3300009143\|Ga0099792_11136190	Not Available	528	Open in IMG/M
3300009521\|Ga0116222_1217109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	824	Open in IMG/M
3300009522\|Ga0116218_1510403	Not Available	536	Open in IMG/M
3300009672\|Ga0116215_1271753	Not Available	739	Open in IMG/M
3300009792\|Ga0126374_11702718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	524	Open in IMG/M
3300009826\|Ga0123355_12198547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	504	Open in IMG/M
3300010043\|Ga0126380_11213844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300010147\|Ga0126319_1603306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter → unclassified Alsobacter → Alsobacter sp. SYSU M60028	626	Open in IMG/M
3300010154\|Ga0127503_11158385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → unclassified Sneathiellales → Sneathiellales bacterium	532	Open in IMG/M
3300010358\|Ga0126370_10148635	Not Available	1704	Open in IMG/M
3300010358\|Ga0126370_10323941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1233	Open in IMG/M
3300010358\|Ga0126370_11208229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	703	Open in IMG/M
3300010359\|Ga0126376_10010573	All Organisms → cellular organisms → Bacteria	5735	Open in IMG/M
3300010359\|Ga0126376_10852109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	896	Open in IMG/M
3300010359\|Ga0126376_13033478	All Organisms → cellular organisms → Bacteria → Proteobacteria	519	Open in IMG/M
3300010360\|Ga0126372_11882346	Not Available	643	Open in IMG/M
3300010361\|Ga0126378_13349553	Not Available	509	Open in IMG/M
3300010362\|Ga0126377_10596623	Not Available	1148	Open in IMG/M
3300010362\|Ga0126377_12215899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → unclassified Sneathiellales → Sneathiellales bacterium	626	Open in IMG/M
3300010366\|Ga0126379_10290618	All Organisms → cellular organisms → Bacteria	1634	Open in IMG/M
3300010379\|Ga0136449_100226321	All Organisms → cellular organisms → Bacteria	3510	Open in IMG/M
3300010379\|Ga0136449_101052839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1302	Open in IMG/M
3300011269\|Ga0137392_11160395	Not Available	630	Open in IMG/M
3300011269\|Ga0137392_11326454	Not Available	579	Open in IMG/M
3300012096\|Ga0137389_11056824	Not Available	696	Open in IMG/M
3300012203\|Ga0137399_10681790	Not Available	865	Open in IMG/M
3300012210\|Ga0137378_11394526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	614	Open in IMG/M
3300012361\|Ga0137360_11690383	Not Available	538	Open in IMG/M
3300012923\|Ga0137359_11067617	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	691	Open in IMG/M
3300012925\|Ga0137419_11908149	Not Available	510	Open in IMG/M
3300012927\|Ga0137416_10279819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1375	Open in IMG/M
3300012944\|Ga0137410_10915533	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300012948\|Ga0126375_12029299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → unclassified Sneathiellales → Sneathiellales bacterium	509	Open in IMG/M
3300012971\|Ga0126369_10120547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2415	Open in IMG/M
3300014164\|Ga0181532_10321232	Not Available	873	Open in IMG/M
3300014657\|Ga0181522_10683690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	626	Open in IMG/M
3300016294\|Ga0182041_11941556	Not Available	547	Open in IMG/M
3300016357\|Ga0182032_11789492	Not Available	537	Open in IMG/M
3300016387\|Ga0182040_10528657	All Organisms → cellular organisms → Bacteria → Proteobacteria	946	Open in IMG/M
3300016404\|Ga0182037_11529233	Not Available	592	Open in IMG/M
3300017970\|Ga0187783_10907326	Not Available	635	Open in IMG/M
3300018060\|Ga0187765_11093348	Not Available	553	Open in IMG/M
3300018088\|Ga0187771_10600907	Not Available	932	Open in IMG/M
3300018088\|Ga0187771_10908506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter → unclassified Alsobacter → Alsobacter sp. SYSU M60028	747	Open in IMG/M
3300018090\|Ga0187770_10254791	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1360	Open in IMG/M
3300018090\|Ga0187770_10677877	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300020170\|Ga0179594_10161757	Not Available	831	Open in IMG/M
3300021086\|Ga0179596_10479160	All Organisms → cellular organisms → Bacteria → Proteobacteria	630	Open in IMG/M
3300021374\|Ga0213881_10105240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1223	Open in IMG/M
3300021401\|Ga0210393_11484816	Not Available	540	Open in IMG/M
3300021402\|Ga0210385_10584723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	851	Open in IMG/M
3300021403\|Ga0210397_10558083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	872	Open in IMG/M
3300021474\|Ga0210390_10449238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1088	Open in IMG/M
3300021477\|Ga0210398_10677559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	835	Open in IMG/M
3300021560\|Ga0126371_13938290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	500	Open in IMG/M
3300021861\|Ga0213853_10243606	Not Available	743	Open in IMG/M
3300021861\|Ga0213853_10680001	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300022527\|Ga0242664_1038379	Not Available	835	Open in IMG/M
3300022557\|Ga0212123_10406271	Not Available	911	Open in IMG/M
3300022722\|Ga0242657_1039310	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300024288\|Ga0179589_10246733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	792	Open in IMG/M
3300025320\|Ga0209171_10328445	Not Available	806	Open in IMG/M
3300025915\|Ga0207693_10272925	All Organisms → cellular organisms → Bacteria	1325	Open in IMG/M
3300026320\|Ga0209131_1009984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5901	Open in IMG/M
3300026515\|Ga0257158_1006415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1682	Open in IMG/M
3300027512\|Ga0209179_1006790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1862	Open in IMG/M
3300027671\|Ga0209588_1214054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	597	Open in IMG/M
3300027846\|Ga0209180_10633116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	588	Open in IMG/M
3300027854\|Ga0209517_10529278	Not Available	637	Open in IMG/M
3300027884\|Ga0209275_10420359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	756	Open in IMG/M
3300027905\|Ga0209415_10234634	All Organisms → cellular organisms → Bacteria	1675	Open in IMG/M
3300027908\|Ga0209006_10196900	All Organisms → cellular organisms → Bacteria	1751	Open in IMG/M
3300027910\|Ga0209583_10734168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → unclassified Sneathiellales → Sneathiellales bacterium	518	Open in IMG/M
3300027911\|Ga0209698_10456208	Not Available	994	Open in IMG/M
3300027911\|Ga0209698_10894355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	666	Open in IMG/M
3300029701\|Ga0222748_1075252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	621	Open in IMG/M
3300030617\|Ga0311356_11920781	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300031093\|Ga0308197_10413555	Not Available	531	Open in IMG/M
3300031521\|Ga0311364_12505270	Not Available	502	Open in IMG/M
3300031708\|Ga0310686_106346608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300031708\|Ga0310686_113924031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	554	Open in IMG/M
3300031751\|Ga0318494_10834908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → unclassified Sneathiellales → Sneathiellales bacterium	540	Open in IMG/M
3300031782\|Ga0318552_10324399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	784	Open in IMG/M
3300031823\|Ga0307478_10444798	Not Available	1077	Open in IMG/M
3300031893\|Ga0318536_10239229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	923	Open in IMG/M
3300031897\|Ga0318520_10933027	Not Available	547	Open in IMG/M
3300031910\|Ga0306923_11717312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter → unclassified Alsobacter → Alsobacter sp. SYSU M60028	648	Open in IMG/M
3300031910\|Ga0306923_12197463	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300031912\|Ga0306921_10339495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1757	Open in IMG/M
3300032205\|Ga0307472_100078765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2182	Open in IMG/M
3300032205\|Ga0307472_100172396	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300033289\|Ga0310914_10826940	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.96%
Aquatic	Environmental → Aquatic	14.16%
Arthropoda	Host-Associated → Arthropoda	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.30%
Freshwater	Environmental → Aquatic → Freshwater	8.85%
Sediment	Environmental → Aquatic → Sediment	3.54%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.77%
Peat	Environmental → Terrestrial → Peat	1.77%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.89%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.60%
Loam	Environmental → Terrestrial → Soil → Loam	12.39%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.54%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.77%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.77%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.89%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.31%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.54%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.77%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.58%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.39%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.19%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.42%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.54%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.65%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	1.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.77%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.77%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.89%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.89%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.89%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083045

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1015273482	3300002245	Forest Soil	MTTKSFAGAWVVSLLMATALTPAGAADMSNERALNPQREPQNWIL
Ga0062387_1009780292	3300004091	Bog Forest Soil	MRTASIAGAFAGSLLVATALTPLRAADMTTERQLNPQREPQNWIL
Ga0062389_1026115941	3300004092	Bog Forest Soil	MTTKALAIAFTSSLLLTTALTPVGAADMTNERALNPQREP
Ga0062389_1030168031	3300004092	Bog Forest Soil	MKTSSLAGTFISSLLVATVLTPVGAADMTNERALNPQREPQN
Ga0062388_1018029311	3300004635	Bog Forest Soil	MRTASIAGACAGSLLMATALTPLRAADMTTERLLNPQREP
Ga0066388_1002782335	3300005332	Tropical Forest Soil	MKTTTFAGALVGSFLMCTALTPARAADVTNERLLNPQREPQNW
Ga0066388_1008803231	3300005332	Tropical Forest Soil	MVAKSFAGALAGSLLIATALTPVRAADMTNERALNPQREP
Ga0066388_1085454052	3300005332	Tropical Forest Soil	MSAKSVMGTIAGVLLMATALSPARGADVTNERLLNPQREPQN
Ga0070713_1013236531	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MMTAKSLAAAFAGSLMMATALTPASAADMTNERLLNPQRE
Ga0070711_1014072091	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRTETFAGALVGSFLMCTALTPARAADVTNERLLNPQREPQNWILH
Ga0066692_105095812	3300005555	Soil	MNTKSVMGNVIGALLMATALTPARAADMTNERLLNPQREPQNWIL
Ga0066903_1030282491	3300005764	Tropical Forest Soil	MRTSGAFIISLLVASALTPVRAADMTNERALNPQREPQNW
Ga0066903_1068162042	3300005764	Tropical Forest Soil	MIAKCLTGAFVGSLLMATALTPARAADVTNERLVN
Ga0075026_1009657982	3300006057	Watersheds	MNVKSVIGALVGSLLMATALTPVRAADMTNERLLN
Ga0070712_1008265081	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTTKLPAVALTSSLLMATALASACAADMTQERALN
Ga0070765_1006182811	3300006176	Soil	MTTVTFPRLLTGALLMATALTPVPMTAFAADMTMERALNPQREPQNW
Ga0070765_1017097161	3300006176	Soil	MNTKTFVGAFIASLLVATALTPARAAEMTNDRALNPQREPQ
Ga0099794_104317781	3300007265	Vadose Zone Soil	MGNAVGALLIATALTPVRAADVTNDRLLNPQREPQNWILHH
Ga0099795_100704171	3300007788	Vadose Zone Soil	MMAKSFTGAFVGSLLMTTALTSARAADMTNERALNPQREPQNW
Ga0099795_102900862	3300007788	Vadose Zone Soil	MTRTSVTGTFIGVLLMATALTPARAADMTNERALN
Ga0099795_103999752	3300007788	Vadose Zone Soil	MTRISVTGTFIGALLMATALTPARAADMTNERALNPQ
Ga0099792_111361902	3300009143	Vadose Zone Soil	MTRISVTGTFIGVLLMATALTPARAADMTNERALNPQREPQNWI
Ga0116222_12171092	3300009521	Peatlands Soil	MRTKSILGALAGAFFVATALTPVRAADMTADRALNPQREPQNW
Ga0116218_15104031	3300009522	Peatlands Soil	MTRTSVTCTFVGVLLMATALTPARAADMTNDRALNPQR*
Ga0116215_12717532	3300009672	Peatlands Soil	MPTKSLFAAFIGSLLLATALTPVGAADVTNERLLNPQREPQNW
Ga0126374_117027182	3300009792	Tropical Forest Soil	MTRVSVTGTLIGALLMATALTPARAADMTNERALNPQREP
Ga0123355_121985471	3300009826	Termite Gut	MNAKSVIGTIAGALLIATALSPARAADVTNERLLNPQREPQNWI
Ga0126380_112138442	3300010043	Tropical Forest Soil	MNTKCMIGAFAGSLLFTTALIPARAADMTNERALNPQREP
Ga0126319_16033061	3300010147	Soil	MNAKTLGGAFVASLLVATALTPARAADMTNDRALN
Ga0127503_111583852	3300010154	Soil	VKEKAMTIRSLARAFAGSLMMATALTPAVAADMTNERAL
Ga0126370_101486351	3300010358	Tropical Forest Soil	MKTMFIIGPLMGSLLLATALSPARAADVTNERLLNP
Ga0126370_103239412	3300010358	Tropical Forest Soil	MRTNFFAGAATGALLVATALMPVHAADMTNERALNPQREP
Ga0126370_112082292	3300010358	Tropical Forest Soil	MAIKSFSGALFGSLLVATALTPGRAADMTNERALNPQREPQNWI
Ga0126376_100105737	3300010359	Tropical Forest Soil	MTRISVAGTFIGALLMATALTPARAADMTDDRALNPQREPQNWI
Ga0126376_108521091	3300010359	Tropical Forest Soil	MKTKLLAVAFTGSLLIATALTPVRAADMTNERALNPQR
Ga0126376_130334781	3300010359	Tropical Forest Soil	MTTQSLVGTFFGSVLLATALTPVRAADMTNDRALNPQR
Ga0126372_118823462	3300010360	Tropical Forest Soil	MSAKSFAGVLTGSLLMATALTPVRAADMSNERALNPQRE
Ga0126378_133495531	3300010361	Tropical Forest Soil	MASISVRSTFIGALLMASALTPVRAADMSYERALNP
Ga0126377_105966231	3300010362	Tropical Forest Soil	MIAKSLTGALVGSLLVATALTPARAADMTNERALNPQREPQNWI
Ga0126377_122158992	3300010362	Tropical Forest Soil	MVAKSFAGALAGSLLIATALTPVRAADMTNERALNPQR
Ga0126379_102906182	3300010366	Tropical Forest Soil	MKTKAFAGALVGSFLLSTTLTPLRAADVTNDRLDP*
Ga0136449_1002263214	3300010379	Peatlands Soil	MNSKSVAGAMAGALLMATALTPARAADMTNDRALN
Ga0136449_1010528391	3300010379	Peatlands Soil	MRTSSVAGAFIASLLVATTLKPVNAADMTTERALNPQREPQNW
Ga0137392_111603951	3300011269	Vadose Zone Soil	MTTKLIAGAFTSLLLMATALTPAGAADMTQERALNPQ
Ga0137392_113264541	3300011269	Vadose Zone Soil	MMAKSLTGAFVGSLLITTALTSARAADMTNERALNPQ
Ga0137389_110568242	3300012096	Vadose Zone Soil	MKTKTFAGALVGSLLMATALTPVRAADMTNERALNPQREP
Ga0137399_106817902	3300012203	Vadose Zone Soil	MAMKSFTSALFGSLLMATALTPARAADMTNERALN
Ga0137378_113945262	3300012210	Vadose Zone Soil	MTTKSVACTFIGVLLMATALTPVRAADMTNDRALNPQREPQNWI
Ga0137360_116903832	3300012361	Vadose Zone Soil	MMAKSFTGAFVGSLLITTALTSARAADMTNERALNPQR
Ga0137359_110676172	3300012923	Vadose Zone Soil	MTTRVLSIAFASSLMMATALSPARAADMTFERALN
Ga0137419_119081491	3300012925	Vadose Zone Soil	MTRISVTGVFIGMLLMATALTPARAADMTNERALNPQREPQ
Ga0137416_102798192	3300012927	Vadose Zone Soil	MKTKAFAGALVGSLLMATALTPARAADMTNERALNPQ
Ga0137410_109155332	3300012944	Vadose Zone Soil	MKTKTLAGALVGSFLLSTALTPSRAADVTNERLLNPQREPQN
Ga0126375_120292992	3300012948	Tropical Forest Soil	MSAKSFAGVFVGSLLIATALTPVRAADMSNDRALNPQ
Ga0126369_101205474	3300012971	Tropical Forest Soil	MTKLTVTGAFFGSLLMATALTPARAADMTNERALNPQR
Ga0181532_103212321	3300014164	Bog	MTPNTFAAAIATSLLMATALTPASAADMTAERALNPQ
Ga0181522_106836901	3300014657	Bog	MNASARAGALLGSLLLATALTPLRAADMSFDRALNTGKEPQNWI
Ga0182041_119415562	3300016294	Soil	MRMSFATAFIGSLMAASAFAPAGAADMTNERALNPQREPQ
Ga0182032_117894921	3300016357	Soil	MTIKSVAGAFIGTLMAATALSPAGAADMTNERALN
Ga0182040_105286571	3300016387	Soil	MTRISVAGTFIGALLMATALTPARAADMTDDRALNPQREPQNW
Ga0182037_115292332	3300016404	Soil	MTIKSVAAGVGAFIGSLMAATALTPAGAADMTNERTLNPQREP
Ga0187783_109073262	3300017970	Tropical Peatland	MRTKFFAGAVTAALLTATALTPVDAGDMTNDRALNPQRE
Ga0187765_110933481	3300018060	Tropical Peatland	MRTETFAGALVGSFLMCTALTPARAADVTNERLLNPQREPQ
Ga0187771_106009071	3300018088	Tropical Peatland	MAAKSFAGAVAGTLLMAAALTLLPVSWAGAADVTNERLLNPQRE
Ga0187771_109085062	3300018088	Tropical Peatland	MAAKPFAGAIAGSLLMATALTSLPVSWAGAADVTNERLLNPQREPQNWIL
Ga0187770_102547911	3300018090	Tropical Peatland	MRTETFAGALVGSFLMCTALTPARAADVTNERLLNPQREPQNWI
Ga0187770_106778771	3300018090	Tropical Peatland	REIMTVKSLAAALAGSLLTATALTSAYAADVTNDRLLNPQREPQNWILTTATTRATASRC
Ga0179594_101617571	3300020170	Vadose Zone Soil	MKTKTFGGALVGSLLMATALTPARAADMTNERALNPQREPQNWI
Ga0179596_104791601	3300021086	Vadose Zone Soil	MAMKSFTSTLFGSLLMATALTPARAADMTNDRALN
Ga0213881_101052403	3300021374	Exposed Rock	MKTATAVGALMSSLLVATALTPANAADMTNERMLN
Ga0210393_114848162	3300021401	Soil	MNSKSVAGVMACALLAATAMTPARAADMTNERALNPQRE
Ga0210385_105847232	3300021402	Soil	MRPRTYAFIGSLLLATALTSVQAADMTTERALNPQREPQNWL
Ga0210397_105580831	3300021403	Soil	MRTSSLAGAFIISLFVASALTPVRAADMTNERALN
Ga0210390_104492383	3300021474	Soil	MRNTAIAVASAASLLIATALTPARGADMTPERALNPQREPQ
Ga0210398_106775591	3300021477	Soil	MTTRSVTGTVLGALLIATALTPACAADMTNDRALNPQREPQ
Ga0126371_139382902	3300021560	Tropical Forest Soil	MTKLSVTGTFFGALLMATALTPAYAADMTNERALNPQR
Ga0213853_102436062	3300021861	Watersheds	MSTKLFAGALAGSLLMATALTPVGAADMNTERALNPQREPQNWIL
Ga0213853_106800012	3300021861	Watersheds	MRRLSLTGTLMGALLAATAITPTRAADMTDERALNPQREPQNWIL
Ga0242664_10383792	3300022527	Soil	MIARSVSGAFVGSLLITSVLTPACGADITNERLLNPQRE
Ga0212123_104062711	3300022557	Iron-Sulfur Acid Spring	MSRQSFVGALAGSLLMATSLTPVGAADVTNERMLNPQREPQNWILHH
Ga0242657_10393102	3300022722	Soil	MKARTFAGALVSSFLMSTALTPARAADMTDERTLNSQREPQNWI
Ga0179589_102467331	3300024288	Vadose Zone Soil	MTRISVTGTFIGALLMATALTPARAADMTNERALNPQREPQNW
Ga0209171_103284452	3300025320	Iron-Sulfur Acid Spring	MSRQSFVGALAGSLLMATSLTPVGAADVTNERMLNPQREPQN
Ga0207693_102729252	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTTKLPAVALTSSLLMATALASACAADMTQERALNPQR
Ga0209131_10099847	3300026320	Grasslands Soil	MTRISVTGTFIGALLMATALTPARAADMTNERALN
Ga0257158_10064153	3300026515	Soil	MTRISVTGTFIGALLIASALTPVRGADMTNERALN
Ga0209179_10067903	3300027512	Vadose Zone Soil	MTRTSVTGTFIGVLLMATALTPARAADMTNERALNPQR
Ga0209588_12140541	3300027671	Vadose Zone Soil	MNTKSVMGNAVGALLIATALTPVRAADVTNDRLLNPQREPQNWILHH
Ga0209180_106331161	3300027846	Vadose Zone Soil	MNAKSFMGTIAGALLMATALTPVRAADVTNDRLLNPQRE
Ga0209517_105292781	3300027854	Peatlands Soil	MTKSFVGILIGSLMVATALTPVVAADMTNDRALNPQREPQ
Ga0209275_104203592	3300027884	Soil	MRNTAIAVASAASLLIATALTPARGADMTPERALNPQREPQNW
Ga0209415_102346342	3300027905	Peatlands Soil	MTTKSFAGAFIGSLMMATALTPVGAADMTNERALNP
Ga0209006_101969001	3300027908	Forest Soil	MTTKLVAVAFTSSLLMATALTPLRAADMTNERALN
Ga0209583_107341682	3300027910	Watersheds	MTRKSLAGAFVGSLLTATALTPAGAADVTNERLLN
Ga0209698_104562082	3300027911	Watersheds	MTTKSLAGAFVGSLLMASALTPVRAADMTNERALN
Ga0209698_108943551	3300027911	Watersheds	MTTKLIAGAFTSALLVATALTPVGAADMTQERALNPQREPQN
Ga0222748_10752521	3300029701	Soil	MTTKCFTGAFVGSLLMATALTPARAADVTNERLLN
Ga0311356_119207812	3300030617	Palsa	MRTKSLAGAIAGSLLVATSLTPARAADMTNERLLNPQ
Ga0308197_104135552	3300031093	Soil	MSTKLSLAGAMGALLMATALTPAGAADMTFERSLN
Ga0311364_125052701	3300031521	Fen	MTTKLLAVAFTSSLLIATALTPVRAADMTNERALN
Ga0310686_1063466082	3300031708	Soil	MTTKFFSGAIVCLLAATALTPVMAADMTPERALNPQREPQNWILH
Ga0310686_1139240311	3300031708	Soil	MTKTLAGAFVGSLLMATALTPVGAADMTNERLLNPQREPQNWI
Ga0318494_108349081	3300031751	Soil	MSTKSLAGAFAGSLLMATALMPLRAADMTPERALNPQREPQNW
Ga0318552_103243992	3300031782	Soil	MRSASIAGAFAGSLLVTTALTPLHAADVTTDRLLNPQREPQNWI
Ga0307478_104447982	3300031823	Hardwood Forest Soil	MTAKSLGSFAGALLMATVLTPARAADMTNDRLLNPQREPQNWI
Ga0318536_102392292	3300031893	Soil	MRTASIAGAFAGSLLVTTALTPLHAADVTTERLLN
Ga0318520_109330272	3300031897	Soil	MTISRRSSFIGTTITMLLVASALTPVRAADMTYER
Ga0306923_117173122	3300031910	Soil	MTISRRSSFIGTTITMLLVASALTPVRAADMTYERALNV
Ga0306923_121974631	3300031910	Soil	MKTKTFAGALVSSFLMAKAFTSAHAADVTNERLLNPQREPQNWI
Ga0306921_103394951	3300031912	Soil	MNIKSMIGAFAGSLLIATALTPVRAADVTNDRLLNP
Ga0307472_1000787651	3300032205	Hardwood Forest Soil	MKTMFIIGTLMGSLLLATALSPARAADVTNERLLN
Ga0307472_1001723961	3300032205	Hardwood Forest Soil	MKTKTFAGALVGSLLIVTALTPVGAADMSNDRALN
Ga0310914_108269401	3300033289	Soil	MTTRMHRLVFTTGLLITTALTPASAADMTTERALNPQREPQ

Hidden Markov Model


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