Metagenome / Metatranscriptome Family F083033

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083033
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	42 residues
Representative Sequence	PEIIVTDVRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRRA
Number of Associated Samples	95
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	96.46 %
% of genes from short scaffolds (< 2000 bps)	92.92 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.611 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (45.133 % of family members)
Environment Ontology (ENVO)	Unclassified (47.788 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.903 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 24.29% Coil/Unstructured: 75.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF03972	MmgE_PrpD	38.94
PF12146	Hydrolase_4	2.65
PF00496	SBP_bac_5	1.77
PF13487	HD_5	0.88
PF01343	Peptidase_S49	0.88
PF13007	LZ_Tnp_IS66	0.88
PF00296	Bac_luciferase	0.88
PF00657	Lipase_GDSL	0.88
PF09912	DUF2141	0.88
PF14579	HHH_6	0.88
PF00211	Guanylate_cyc	0.88
PF13358	DDE_3	0.88
PF12681	Glyoxalase_2	0.88
PF02738	MoCoBD_1	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	38.94
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.77
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.88
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.61 %
Unclassified	root	N/A	12.39 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.61 %
Unclassified	root	N/A	12.39 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.61 %
Unclassified	root	N/A	12.39 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	82.30 %
Unclassified	root	N/A	12.39 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	79.65 %
Unclassified	root	N/A	12.39 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	67.26 %
Unclassified	root	N/A	12.39 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	67.26 %
Unclassified	root	N/A	12.39 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004152\|Ga0062386_100773898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	790	Open in IMG/M
3300005172\|Ga0066683_10677957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300005332\|Ga0066388_106555876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	587	Open in IMG/M
3300005437\|Ga0070710_10117640	All Organisms → cellular organisms → Bacteria → Proteobacteria	1604	Open in IMG/M
3300005437\|Ga0070710_10234773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1172	Open in IMG/M
3300005439\|Ga0070711_101562100	All Organisms → cellular organisms → Bacteria → Proteobacteria	576	Open in IMG/M
3300005445\|Ga0070708_101401303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	652	Open in IMG/M
3300005552\|Ga0066701_10526376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	729	Open in IMG/M
3300005556\|Ga0066707_10292640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1066	Open in IMG/M
3300005569\|Ga0066705_10401083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	859	Open in IMG/M
3300005764\|Ga0066903_106393237	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300006175\|Ga0070712_101288788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636	Open in IMG/M
3300006175\|Ga0070712_101912301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300006796\|Ga0066665_10971799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	653	Open in IMG/M
3300006806\|Ga0079220_11763224	Not Available	544	Open in IMG/M
3300010048\|Ga0126373_10182680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2019	Open in IMG/M
3300010048\|Ga0126373_11908265	Not Available	657	Open in IMG/M
3300010343\|Ga0074044_10140526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1618	Open in IMG/M
3300010359\|Ga0126376_11813526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	648	Open in IMG/M
3300010360\|Ga0126372_12352133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	583	Open in IMG/M
3300010376\|Ga0126381_100393469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1928	Open in IMG/M
3300010398\|Ga0126383_13367629	Not Available	522	Open in IMG/M
3300010398\|Ga0126383_13448900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M
3300012202\|Ga0137363_10815339	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300012210\|Ga0137378_10259654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1617	Open in IMG/M
3300012210\|Ga0137378_11007188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	747	Open in IMG/M
3300012210\|Ga0137378_11706518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300012971\|Ga0126369_10844506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1000	Open in IMG/M
3300014497\|Ga0182008_10715015	Not Available	574	Open in IMG/M
3300014497\|Ga0182008_10991613	Not Available	500	Open in IMG/M
3300015245\|Ga0137409_10537654	All Organisms → cellular organisms → Bacteria → Proteobacteria	995	Open in IMG/M
3300016270\|Ga0182036_10317492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1190	Open in IMG/M
3300016270\|Ga0182036_11398882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586	Open in IMG/M
3300016294\|Ga0182041_11843918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300016357\|Ga0182032_10309420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1250	Open in IMG/M
3300016357\|Ga0182032_11164398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	663	Open in IMG/M
3300016387\|Ga0182040_10348833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1147	Open in IMG/M
3300016387\|Ga0182040_10468423	Not Available	1001	Open in IMG/M
3300016422\|Ga0182039_11885495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300020199\|Ga0179592_10077577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1523	Open in IMG/M
3300021178\|Ga0210408_11078755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	618	Open in IMG/M
3300021401\|Ga0210393_10767397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	785	Open in IMG/M
3300021407\|Ga0210383_11497992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300021432\|Ga0210384_11126471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	688	Open in IMG/M
3300021474\|Ga0210390_11357716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300021478\|Ga0210402_10488805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1143	Open in IMG/M
3300021560\|Ga0126371_11532064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	794	Open in IMG/M
3300022507\|Ga0222729_1013139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	900	Open in IMG/M
3300022525\|Ga0242656_1013570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1132	Open in IMG/M
3300022531\|Ga0242660_1092402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	729	Open in IMG/M
3300022713\|Ga0242677_1034663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	689	Open in IMG/M
3300022726\|Ga0242654_10203126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	690	Open in IMG/M
3300025939\|Ga0207665_10381684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1069	Open in IMG/M
3300026550\|Ga0209474_10268058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1038	Open in IMG/M
3300026557\|Ga0179587_10954801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	565	Open in IMG/M
3300027698\|Ga0209446_1095729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	761	Open in IMG/M
3300027765\|Ga0209073_10253375	Not Available	685	Open in IMG/M
3300027903\|Ga0209488_10032177	All Organisms → cellular organisms → Bacteria	3823	Open in IMG/M
3300028047\|Ga0209526_10448448	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300031469\|Ga0170819_10815268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	686	Open in IMG/M
3300031545\|Ga0318541_10660730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300031549\|Ga0318571_10264289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636	Open in IMG/M
3300031564\|Ga0318573_10014061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3469	Open in IMG/M
3300031668\|Ga0318542_10603872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M
3300031724\|Ga0318500_10575725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	569	Open in IMG/M
3300031740\|Ga0307468_101326829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300031744\|Ga0306918_10197931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1513	Open in IMG/M
3300031748\|Ga0318492_10118361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1315	Open in IMG/M
3300031764\|Ga0318535_10036770	Not Available	1991	Open in IMG/M
3300031770\|Ga0318521_10353962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	870	Open in IMG/M
3300031771\|Ga0318546_10475376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	876	Open in IMG/M
3300031777\|Ga0318543_10297885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	721	Open in IMG/M
3300031792\|Ga0318529_10101020	Not Available	1301	Open in IMG/M
3300031794\|Ga0318503_10033039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1525	Open in IMG/M
3300031795\|Ga0318557_10115595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1197	Open in IMG/M
3300031795\|Ga0318557_10358375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	670	Open in IMG/M
3300031796\|Ga0318576_10491732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	579	Open in IMG/M
3300031798\|Ga0318523_10314226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	781	Open in IMG/M
3300031819\|Ga0318568_10685477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300031823\|Ga0307478_10124421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2025	Open in IMG/M
3300031831\|Ga0318564_10361340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300031833\|Ga0310917_11005294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300031835\|Ga0318517_10158756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1013	Open in IMG/M
3300031835\|Ga0318517_10519130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300031859\|Ga0318527_10036493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1860	Open in IMG/M
3300031893\|Ga0318536_10446704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	652	Open in IMG/M
3300031896\|Ga0318551_10415165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	766	Open in IMG/M
3300031897\|Ga0318520_10970390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300031910\|Ga0306923_10336113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1723	Open in IMG/M
3300031941\|Ga0310912_11031821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	630	Open in IMG/M
3300031942\|Ga0310916_11518114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
3300031945\|Ga0310913_10701150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	716	Open in IMG/M
3300031946\|Ga0310910_10637194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	844	Open in IMG/M
3300031947\|Ga0310909_10189518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1705	Open in IMG/M
3300031981\|Ga0318531_10039609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1967	Open in IMG/M
3300032001\|Ga0306922_10242046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1938	Open in IMG/M
3300032001\|Ga0306922_10585795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1183	Open in IMG/M
3300032001\|Ga0306922_11074421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	826	Open in IMG/M
3300032025\|Ga0318507_10036504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1868	Open in IMG/M
3300032025\|Ga0318507_10493307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300032035\|Ga0310911_10301643	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300032035\|Ga0310911_10326717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	884	Open in IMG/M
3300032051\|Ga0318532_10205427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	699	Open in IMG/M
3300032065\|Ga0318513_10125661	Not Available	1213	Open in IMG/M
3300032065\|Ga0318513_10583099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300032094\|Ga0318540_10309603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	762	Open in IMG/M
3300032261\|Ga0306920_100128679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3768	Open in IMG/M
3300032261\|Ga0306920_101222408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1084	Open in IMG/M
3300032515\|Ga0348332_11798773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	889	Open in IMG/M
3300032893\|Ga0335069_11914567	Not Available	627	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.23%
Host-Associated	Host-Associated	1.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.46%
Aquatic	Environmental → Aquatic	1.77%
Plants	Host-Associated → Plants	1.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.58%
Freshwater	Environmental → Aquatic → Freshwater	1.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.77%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.07%
Loam	Environmental → Terrestrial → Soil → Loam	9.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	61.06%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	45.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.31%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.77%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022713	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_07508660	2170459010	Grass Soil	EINLNDADFVLGIDFLGSQRVWISYGSQQLFLMRRI
Ga0062386_1007738981	3300004152	Bog Forest Soil	PALIVADVSLRDADLILGVDFLSSRRIWLSYGSQQIFLSRRT*
Ga0066683_106779572	3300005172	Soil	RNPEIIIADLKLSDADLVLCIDIVRQRRIWLSYGAQKIFLLRRT*
Ga0066388_1065558762	3300005332	Tropical Forest Soil	IRNPQLIVTDIRLNDADVVLGIDLLKSQRVWMSYGSQQIFLMRR*
Ga0070710_101176402	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	IRDPEIGVTDLRLSDADLVLGVDFLQSRRVWMSYGSQQIFLSRVG*
Ga0070710_102347735	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	IRDPEIGVTDLRLSDADLVLGVDFLQSRRVWMSYGSQQIFLSRRS*
Ga0070711_1015621003	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	EVIRDPEIGVTDLRLSDADLVLGVDFLQSRRVWMSYGSQQIFLSRRS*
Ga0070708_1014013031	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	IVTDVKLSDADLVLGIDFLNSRRIWLSYGSQQIFLLRRT*
Ga0066701_105263761	3300005552	Soil	GGEVIRNPEIIIADLKLGDADLVLGIDIVRPWRIWLSYGAQKIFVLRRT*
Ga0066707_102926401	3300005556	Soil	RNPEIIIADLKLSDADLVLGIDVVRPWRIWLSYGAQKIFVLRRT*
Ga0066705_104010831	3300005569	Soil	NPTLIVADVSLKDADLILGIDFLSSRRIWLSYGSQQIFLSRRT*
Ga0066903_1063932372	3300005764	Tropical Forest Soil	DIFIRNPEIDVADIRLSEADLVLGIDFLSSRRIWMSYGSQQIFLWGRT*
Ga0070766_101290471	3300005921	Soil	EINLNDADFVLGIDFLGSQRVWISYGSQQLFLMRRI*
Ga0070712_1012887881	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VADVSLKDADLILGIDFLGSRRIWLSYGSQQIFLLRPT*
Ga0070712_1019123012	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RLSDADLVLGVDFLQSRRVWMSYGSQQIFLSRRS*
Ga0066665_109717991	3300006796	Soil	VVRNPELIVTDFKLNDADLLIWIDILSSRRIWLSYGSQQIFLSHRV*
Ga0079220_117632241	3300006806	Agricultural Soil	LRLSDADLVLGVDFLQSRRVWMSYGSQQIFLSRRN*
Ga0126373_101826801	3300010048	Tropical Forest Soil	PQVVRNPELIVTDIRLNDADIVLGIDFLRSQRIWMSYGSEQIFLMRR*
Ga0126373_119082651	3300010048	Tropical Forest Soil	VVRNPEIIVTDVRLNDADLVLGIDLMRSQRVWLSYGSRQIFLMRR*
Ga0074044_101405263	3300010343	Bog Forest Soil	VTDVRLSDADLVLGIDFLKSRRIWLSYGSQQIFLLRRT*
Ga0126376_118135262	3300010359	Tropical Forest Soil	VADVSIKDADLVLGFDFLSARRLWLSYGSQQIFLTRRG*
Ga0126372_123521331	3300010360	Tropical Forest Soil	TIRNPEIIVTDVTLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRRT*
Ga0126381_1003934693	3300010376	Tropical Forest Soil	GGDIFIRNPEIDVADIRLSEADLVLGIDFLSSRRIWMSYGSQQIFLWGRT*
Ga0126383_133676291	3300010398	Tropical Forest Soil	QLQIGPEVIRNPQLIVTDIRLNDADVVLGIDLLKSQRVWMSYGSQQIFLMRR*
Ga0126383_134489001	3300010398	Tropical Forest Soil	GAETIRNPEIIVTDVTLSDADLVLGIDFLKPRRIWFSYGSQQIFIMRRT*
Ga0137363_108153392	3300012202	Vadose Zone Soil	LRNPEIVVADVKLGDADLVLGIDFLISRRIWLSYGSEQIFLSRRG*
Ga0137378_102596541	3300012210	Vadose Zone Soil	EILRNPEIVVADVKLGDADLVLGIDFLISRRIWLSYGSERIFLSRRT*
Ga0137378_110071882	3300012210	Vadose Zone Soil	TLRDADLVLGVDFVRSRRIWFSYRSRQIFLRRATR*
Ga0137378_117065181	3300012210	Vadose Zone Soil	DFKLNDADLLIGIDILSSRRIWLSYGSQQIFLSHRV*
Ga0126369_108445062	3300012971	Tropical Forest Soil	IVTDIRLNDADIVLGIDFLRSQRIWMSYGSQQIFLARR*
Ga0182008_107150152	3300014497	Rhizosphere	VTNLRLQDADVVLGVDFLRSRRVWLSYGSHQIFLAHPA*
Ga0182008_109916131	3300014497	Rhizosphere	VTGNPEIGVTDLRLSDADLVLGVDFLRSRRVWMSYGSQLIFLSRRI*
Ga0137409_105376541	3300015245	Vadose Zone Soil	RVHPVGEAIRNPEIIVADLNLSDADLVLGIDIVRPWRIWLSYGVQKIFLLRRT*
Ga0182036_103174923	3300016270	Soil	VTDVMLSDADLVLGIDFLKSRRLWLSYGSQQLFLSRRT
Ga0182036_113988821	3300016270	Soil	NPEIIVTDVRLSDADLVLGIDFLRARRIWFSYGSRQIFIMRRS
Ga0182041_118439181	3300016294	Soil	LIIADVSLKDADLVLGIDFLGSRRVWLSYGSQQIFLARRT
Ga0182032_103094203	3300016357	Soil	EIVVTDVRLSDADLVLGIDFLRARRIWFSYGSRQIFIMRRS
Ga0182032_111643981	3300016357	Soil	DVRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRRA
Ga0182040_103488331	3300016387	Soil	ELIVADVSLKDADLILGIDFLSSRRLWLSYGAQQIFLSRRS
Ga0182040_104684232	3300016387	Soil	GTVAIRSPEMIVTELRLSDADLVLGIDFLRSRRIWLSYGSGQIFLLHST
Ga0182039_118854951	3300016422	Soil	IIVTDVRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRGA
Ga0179592_100775771	3300020199	Vadose Zone Soil	IIVAGLNLSDADLVLGIDIVRSWRIWLSYGAQKIFLLRRT
Ga0210401_112603921	3300020583	Soil	TEINLNDADFVLGIDFLGSQRVWISYGSQQLFLMRRI
Ga0210408_110787551	3300021178	Soil	VKLGDADLVLGIDFLISRRIWLSYGSVQIFLSRRG
Ga0210393_107673971	3300021401	Soil	NPEIIVAGLNLSDADLVLGIDIVRSWRIWLSYGAQKIFLLRRT
Ga0210383_114979921	3300021407	Soil	EVIRDPEIGVTDLRLSDANLVLGVDFLQSRRVWMSYGSQQIFLSRRS
Ga0210384_111264713	3300021432	Soil	EIIVAGLNLSDADLVLGIDIVRSWRIWLSYGAQKIFLLRRT
Ga0210390_113577161	3300021474	Soil	ADVSLRDADLVLGIDFLASRRIWLSYGSQQIFLSRRT
Ga0210402_104888051	3300021478	Soil	DLKLSDADLVLGIDFLRPRRVWLSYGSQQLFLLRRI
Ga0126371_115320641	3300021560	Tropical Forest Soil	EVGGEVVHNPELIVADVSLKDADLVLGIDFLSARRLWLSYGSQQIFLTRRG
Ga0222729_10131391	3300022507	Soil	IGGEAMRNPEIIVAGLNLSDADLVLGIDIVRSWRIWLSYGAQKIFLLRRT
Ga0242656_10135701	3300022525	Soil	LNLSDADLVLGIDMVRSWRIWLSYGAQKIFLLRRT
Ga0242660_10924022	3300022531	Soil	ADVSLKDADLVLGIDFLGSRRIWLSYGSQQIFLSRRT
Ga0242677_10346631	3300022713	Soil	DVSLRDAELFLGIDFLGSRRIWLSYGSQQIFLSRRT
Ga0242654_102031261	3300022726	Soil	IRNPEIIVAGLNLSDADLVVGIDIVRSWRIWVSYGAQKIFLLRRT
Ga0207665_103816844	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	ADVSLKDADLILGIDFLGSRRIWLSYGSQQIFLSRPT
Ga0209474_102680581	3300026550	Soil	GEVVRNPALIVADVSLKDGDLVLGIDFIAARRIWLSYGSQQIFLSRRT
Ga0179587_109548011	3300026557	Vadose Zone Soil	IIVADLNLSDADLVLGIDIVRPWRIWLSYGVQKIFLLRRT
Ga0209446_10957291	3300027698	Bog Forest Soil	VADVSLRDADLVLGIDFLGSRRIWLSYGSQQIFLSRRT
Ga0209073_102533751	3300027765	Agricultural Soil	LRLSDADLVLGVDFLQSRRVWMSYGSQQIFLSRRN
Ga0209488_100321771	3300027903	Vadose Zone Soil	PEIIVAGLNLSDADLVLGIDIVRSWRIWLSYGAQKIFLLRRT
Ga0209526_104484481	3300028047	Forest Soil	ADVKLSDADLVLGIDFLISRRIWLSYGSAQIFLSRRG
Ga0170819_108152682	3300031469	Forest Soil	VADLRLSDADLVLGVDFLQSRRVWMSYGSQQIFLSRRI
Ga0318541_106607301	3300031545	Soil	PDFIVADVKLSDADLVLGIDFLGSRRVWWSYGSQKIFLSRRN
Ga0318571_102642891	3300031549	Soil	VMLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRPT
Ga0318573_100140611	3300031564	Soil	VTDVTLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRRT
Ga0318542_106038722	3300031668	Soil	VTDIRLNDADIVLGIDFLGSQRIWMSYGSQQIFLMRR
Ga0318500_105757251	3300031724	Soil	NPEIIVTDVRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRGA
Ga0307468_1013268292	3300031740	Hardwood Forest Soil	GEAIHNSEIIVADLNLSDADLVLGIDILRSWRIWLSYGAQKVFLLRRN
Ga0306918_101979312	3300031744	Soil	AETIRDPEIIVTDVTLNDADLVMGIDFLRPRRIWLSYGSQQIFIMHRA
Ga0318492_101183611	3300031748	Soil	VRLSDADLVLGIDFLRARRIWFSYGSRQIFIMRRS
Ga0318535_100367701	3300031764	Soil	IIRTPELIVTDIRLNDADIVLGIDFLRSQRMWMSYGSQQIFLMRR
Ga0318521_103539621	3300031770	Soil	IVTDVRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRGA
Ga0318546_104753763	3300031771	Soil	IMTDLRLSDADLVLGIDFLRARRIWFSYGSRQIFIMRRS
Ga0318543_102978851	3300031777	Soil	IIVNDLRLSDADLVLGIDFLRARRIWFSYGSRQIFIMRRS
Ga0318529_101010202	3300031792	Soil	TPELIVTNIRLNDADIVLGIDFLRSQRMWMSYGSQQIFLMRR
Ga0318503_100330393	3300031794	Soil	PEIIVTDVRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRGA
Ga0318557_101155951	3300031795	Soil	IVTDVRLSDADLVLGIDFLRPRRIWLSYGSQQIFIMRRV
Ga0318557_103583753	3300031795	Soil	VTDVMLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRGA
Ga0318576_104917321	3300031796	Soil	VTDVRLSDADLVLGIDFLRARRIWFSYGSRQIFIMRRS
Ga0318523_103142263	3300031798	Soil	VRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRRA
Ga0318568_106854771	3300031819	Soil	VVRNPELIVADVSLKDADLILGIDFLSSRRLWLSYGAQQIFLSRRS
Ga0307478_101244213	3300031823	Hardwood Forest Soil	NPDIIVTDVRLSDADLVLGIDFLRPRRIWLSYGSQQIFIMRRA
Ga0318564_103613403	3300031831	Soil	TDVRLSDADLVLGIDFLRPRRVWLSYGSQQIFIMRRA
Ga0310917_110052942	3300031833	Soil	TIRNPEIVVTDVRLSDADLVLGVDFLRSRRIWLSYGSQQIFIKH
Ga0318517_101587561	3300031835	Soil	PELIVADVSLKDADLILGIDFLSSRRLWLSYGAQQIFLSRRS
Ga0318517_105191301	3300031835	Soil	GTEVLRNPEIIVTDLRLSDADLVLGIDFLRARRIWFSYGSRQIFIMRRS
Ga0318527_100364931	3300031859	Soil	RNPEIIVTDVRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRGA
Ga0318536_104467043	3300031893	Soil	VTDVRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRRA
Ga0318551_104151653	3300031896	Soil	PELIVADVSLKDADLVLGVDFLASRRIWLSYGSQQIFLSRRT
Ga0318520_109703901	3300031897	Soil	IIVTDVRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRRA
Ga0306923_103361133	3300031910	Soil	VTDVRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRGA
Ga0310912_110318211	3300031941	Soil	PEIIVTDVRLSDADLVLGIDFLRARRIWFSYGSRQIFIMRRS
Ga0310916_115181141	3300031942	Soil	IRNPEIVVTDVRLSDADLVLGVDFLRSRRIWLSYGSQQIFIKH
Ga0310913_107011503	3300031945	Soil	ADVKLSDADLVLGIDFLGSRRVWWSYGSQKIFLSRRN
Ga0310910_106371941	3300031946	Soil	PEIIVTDVRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRRA
Ga0310909_101895183	3300031947	Soil	IRNPEIIVTDVMLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRPT
Ga0318531_100396091	3300031981	Soil	VRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRGA
Ga0306922_102420461	3300032001	Soil	RMEVGGEVVRNPELIVADVSLKDADLILGIDFLSSRRLWLSYGAQQIFLSRRS
Ga0306922_105857951	3300032001	Soil	DVTLNDADLVIGIDFLRPRRIWLSYGSQQIFIMRRA
Ga0306922_110744213	3300032001	Soil	NPEIVVTDVMLSDADLVLGIDFLKSRRLWLSYGSQQLFLSRRT
Ga0318507_100365043	3300032025	Soil	IRNPEIIVTDVGLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRGA
Ga0318507_104933072	3300032025	Soil	IVTDLRLSDADLVLGIDFLRARRIWFSYGSRQIFIMRRS
Ga0310911_103016431	3300032035	Soil	VGTEVLRNPEIIVTDVRLSDADLVLGIDFLRARRIWFSYGSRQVFIMRRA
Ga0310911_103267173	3300032035	Soil	TETIRNPEIIVTDVRLSDADLVLGIDFLRPRRIWLSYGSQQIFIMRRV
Ga0318532_102054273	3300032051	Soil	IRDPEIIVTDVTLNDADLVMGIDFLRPRRIWLSYGSQQIFIMHRA
Ga0318513_101256612	3300032065	Soil	PELIVTNIRLNDADIVLGIDFLRSQRMWMSYGSQQIFLMRR
Ga0318513_105830992	3300032065	Soil	TDVRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRGA
Ga0318540_103096033	3300032094	Soil	GAETIRDPEIIVTDVTLNDADLVMGIDFLRPRRIWLSYGSQQIFIMHRA
Ga0306920_1001286791	3300032261	Soil	FIVADVKLSDADLVLGIDFLGSRRVWWSYGSQKIFLSRRS
Ga0306920_1012224081	3300032261	Soil	IRNPEIIVTDVRLSDADLVLGIDFLRPRRIWFSYGSQQIFIMRGA
Ga0348332_117987733	3300032515	Plant Litter	VRLSDADLVLGIDFLRPRRIWLSYGSQQIFIMHRA
Ga0335069_119145672	3300032893	Soil	EVGSVTVRDPEVVVADIQLRDADIVLGADFLSARRIWLSYASFQIFLSER

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083033

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences