Metagenome / Metatranscriptome Family F082894

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082894
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	98 residues
Representative Sequence	MQALSNVEILERALTKARANNPDWKPLLLDRPEDLIQMGHENMVLFNRGFAQAFWGEAPYTVVRTDSGGAWGQDSETLAWRYHLQELAVAPDLFAYLAKFL
Number of Associated Samples	98
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.84 %
% of genes near scaffold ends (potentially truncated)	35.40 %
% of genes from short scaffolds (< 2000 bps)	91.15 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.035 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (17.699 % of family members)
Environment Ontology (ENVO)	Unclassified (30.973 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.177 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.31% β-sheet: 1.55% Coil/Unstructured: 58.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF04545	Sigma70_r4	19.47
PF00171	Aldedh	9.73
PF04226	Transgly_assoc	5.31
PF00011	HSP20	4.42
PF06210	DUF1003	3.54
PF09900	DUF2127	2.65
PF13586	DDE_Tnp_1_2	1.77
PF01145	Band_7	1.77
PF05524	PEP-utilisers_N	1.77
PF13419	HAD_2	1.77
PF09364	XFP_N	0.88
PF00076	RRM_1	0.88
PF06078	DUF937	0.88
PF07043	DUF1328	0.88
PF04107	GCS2	0.88
PF12759	HTH_Tnp_IS1	0.88
PF00990	GGDEF	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	9.73
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	9.73
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	9.73
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	5.31
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	4.42
COG4420	Uncharacterized membrane protein	Function unknown [S]	3.54
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	0.88
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.04 %
Unclassified	root	N/A	7.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.04 %
Unclassified	root	N/A	7.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.04 %
Unclassified	root	N/A	7.96 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	65.49 %
Unclassified	root	N/A	7.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.54 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	61.06 %
Unclassified	root	N/A	7.96 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	61.06 %
Unclassified	root	N/A	7.96 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	2.65 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	57.52 %
Unclassified	root	N/A	7.96 %
Chloroflexales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales	2.65 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	57.52 %
Unclassified	root	N/A	7.96 %
Chloroflexineae	suborder	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae	2.65 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	57.52 %
Unclassified	root	N/A	7.96 %
Oscillochloridaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Oscillochloridaceae	2.65 %
Geobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	57.52 %
Unclassified	root	N/A	7.96 %
Oscillochloris	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Oscillochloridaceae → Oscillochloris	2.65 %
Geobacter benzoatilyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter benzoatilyticus	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_13298345	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	714	Open in IMG/M
3300000559\|F14TC_103341708	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	973	Open in IMG/M
3300000787\|JGI11643J11755_11754509	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300001431\|F14TB_107130504	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	538	Open in IMG/M
3300004013\|Ga0055465_10343942	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	519	Open in IMG/M
3300004463\|Ga0063356_102713068	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	762	Open in IMG/M
3300004798\|Ga0058859_11607744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Oscillochloridaceae → Oscillochloris	879	Open in IMG/M
3300004801\|Ga0058860_12125242	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	658	Open in IMG/M
3300005334\|Ga0068869_100797604	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	811	Open in IMG/M
3300005340\|Ga0070689_100830679	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	814	Open in IMG/M
3300005343\|Ga0070687_100124036	All Organisms → cellular organisms → Bacteria → Proteobacteria	1482	Open in IMG/M
3300005345\|Ga0070692_10073301	All Organisms → cellular organisms → Bacteria	1829	Open in IMG/M
3300005347\|Ga0070668_102205441	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	509	Open in IMG/M
3300005438\|Ga0070701_10103933	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300005441\|Ga0070700_100475445	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	956	Open in IMG/M
3300005466\|Ga0070685_10712118	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	733	Open in IMG/M
3300005466\|Ga0070685_11045283	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	615	Open in IMG/M
3300005471\|Ga0070698_101151831	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	724	Open in IMG/M
3300005529\|Ga0070741_10278678	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1579	Open in IMG/M
3300005544\|Ga0070686_100054178	All Organisms → cellular organisms → Bacteria → Proteobacteria	2564	Open in IMG/M
3300005548\|Ga0070665_101202080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Oscillochloridaceae → Oscillochloris	769	Open in IMG/M
3300005549\|Ga0070704_100813069	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300005617\|Ga0068859_100049739	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4210	Open in IMG/M
3300005719\|Ga0068861_102108407	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	564	Open in IMG/M
3300005840\|Ga0068870_11079205	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	576	Open in IMG/M
3300005842\|Ga0068858_100315226	All Organisms → cellular organisms → Bacteria	1494	Open in IMG/M
3300006041\|Ga0075023_100112716	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300006050\|Ga0075028_100099535	Not Available	1481	Open in IMG/M
3300006196\|Ga0075422_10313838	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	675	Open in IMG/M
3300006844\|Ga0075428_100069083	All Organisms → cellular organisms → Bacteria	3864	Open in IMG/M
3300006844\|Ga0075428_100324659	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1654	Open in IMG/M
3300006844\|Ga0075428_101174173	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	809	Open in IMG/M
3300006845\|Ga0075421_100842670	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300006846\|Ga0075430_100330363	All Organisms → cellular organisms → Bacteria	1260	Open in IMG/M
3300006846\|Ga0075430_101321428	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	593	Open in IMG/M
3300006853\|Ga0075420_100380172	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300006872\|Ga0101947_1017319	All Organisms → cellular organisms → Bacteria	4608	Open in IMG/M
3300006881\|Ga0068865_100591896	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	936	Open in IMG/M
3300006904\|Ga0075424_100947333	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300006954\|Ga0079219_10224712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1090	Open in IMG/M
3300009094\|Ga0111539_10371399	All Organisms → cellular organisms → Bacteria	1665	Open in IMG/M
3300009094\|Ga0111539_11717513	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	728	Open in IMG/M
3300009100\|Ga0075418_10073672	All Organisms → cellular organisms → Bacteria	3635	Open in IMG/M
3300009156\|Ga0111538_10352939	All Organisms → cellular organisms → Bacteria	1861	Open in IMG/M
3300009156\|Ga0111538_11348353	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	900	Open in IMG/M
3300009156\|Ga0111538_11867803	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	756	Open in IMG/M
3300009157\|Ga0105092_10592396	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	640	Open in IMG/M
3300009815\|Ga0105070_1130353	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	510	Open in IMG/M
3300009822\|Ga0105066_1087541	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	680	Open in IMG/M
3300010043\|Ga0126380_11372592	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	619	Open in IMG/M
3300010046\|Ga0126384_11605115	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	612	Open in IMG/M
3300010166\|Ga0126306_10734079	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	794	Open in IMG/M
3300010359\|Ga0126376_12484715	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	566	Open in IMG/M
3300010360\|Ga0126372_13293156	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	502	Open in IMG/M
3300010362\|Ga0126377_12605833	Not Available	581	Open in IMG/M
3300010399\|Ga0134127_11416752	Not Available	766	Open in IMG/M
3300010400\|Ga0134122_13135761	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	517	Open in IMG/M
3300010401\|Ga0134121_12237385	Not Available	584	Open in IMG/M
3300012944\|Ga0137410_11829989	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	537	Open in IMG/M
3300012958\|Ga0164299_11633474	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	509	Open in IMG/M
3300013306\|Ga0163162_12805592	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	561	Open in IMG/M
3300014326\|Ga0157380_13171698	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	525	Open in IMG/M
3300014968\|Ga0157379_11624010	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	632	Open in IMG/M
3300015077\|Ga0173483_10592815	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	608	Open in IMG/M
3300015371\|Ga0132258_12802311	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300015372\|Ga0132256_101770018	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	726	Open in IMG/M
3300017792\|Ga0163161_10173860	All Organisms → cellular organisms → Bacteria → Proteobacteria	1648	Open in IMG/M
3300017792\|Ga0163161_10846610	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	771	Open in IMG/M
3300018031\|Ga0184634_10005383	All Organisms → cellular organisms → Bacteria	4279	Open in IMG/M
3300018056\|Ga0184623_10328052	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	688	Open in IMG/M
3300018078\|Ga0184612_10341405	Not Available	761	Open in IMG/M
3300018079\|Ga0184627_10301510	Not Available	840	Open in IMG/M
3300018469\|Ga0190270_10239760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1568	Open in IMG/M
3300019233\|Ga0184645_1265092	Not Available	568	Open in IMG/M
3300019259\|Ga0184646_1385728	Not Available	582	Open in IMG/M
3300019767\|Ga0190267_10819455	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	622	Open in IMG/M
3300020065\|Ga0180113_1081918	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	513	Open in IMG/M
3300020066\|Ga0180108_1032044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Oscillochloridaceae → Oscillochloris	956	Open in IMG/M
3300025900\|Ga0207710_10701108	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	531	Open in IMG/M
3300025903\|Ga0207680_10577868	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	803	Open in IMG/M
3300025923\|Ga0207681_11559478	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	553	Open in IMG/M
3300025925\|Ga0207650_11814882	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	516	Open in IMG/M
3300025936\|Ga0207670_10022539	All Organisms → cellular organisms → Bacteria	3905	Open in IMG/M
3300025961\|Ga0207712_10853635	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	803	Open in IMG/M
3300025972\|Ga0207668_10102656	All Organisms → cellular organisms → Bacteria	2128	Open in IMG/M
3300025972\|Ga0207668_12166378	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	500	Open in IMG/M
3300026035\|Ga0207703_10744046	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300026075\|Ga0207708_10034079	All Organisms → cellular organisms → Bacteria → Proteobacteria	3872	Open in IMG/M
3300026075\|Ga0207708_10074044	All Organisms → cellular organisms → Bacteria	2610	Open in IMG/M
3300026095\|Ga0207676_11351435	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300026118\|Ga0207675_100213358	All Organisms → cellular organisms → Bacteria	1858	Open in IMG/M
3300026118\|Ga0207675_100384710	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1380	Open in IMG/M
3300026118\|Ga0207675_101528274	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	688	Open in IMG/M
3300026856\|Ga0209852_1010821	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	566	Open in IMG/M
3300027903\|Ga0209488_10256089	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300027907\|Ga0207428_10650111	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	757	Open in IMG/M
3300027907\|Ga0207428_10898401	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	626	Open in IMG/M
3300027909\|Ga0209382_10952523	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	899	Open in IMG/M
3300027909\|Ga0209382_11413174	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	698	Open in IMG/M
3300027909\|Ga0209382_12082344	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	541	Open in IMG/M
3300027910\|Ga0209583_10343519	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	692	Open in IMG/M
3300028379\|Ga0268266_10326781	Not Available	1437	Open in IMG/M
3300030903\|Ga0308206_1093387	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	664	Open in IMG/M
3300031058\|Ga0308189_10210990	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	710	Open in IMG/M
3300031092\|Ga0308204_10098484	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	802	Open in IMG/M
3300031424\|Ga0308179_1010105	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	907	Open in IMG/M
3300031858\|Ga0310892_11331429	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	515	Open in IMG/M
3300032012\|Ga0310902_11263832	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	522	Open in IMG/M
3300032013\|Ga0310906_10684281	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	715	Open in IMG/M
3300032075\|Ga0310890_10353551	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300033004\|Ga0335084_10971376	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter benzoatilyticus	857	Open in IMG/M
3300033417\|Ga0214471_10221836	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300033551\|Ga0247830_11699587	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	506	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.98%
Host-Associated	Host-Associated	45.13%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	43.36%
Terrestrial	Environmental → Terrestrial	42.48%
Aquatic	Environmental → Aquatic	11.50%
Human	Host-Associated → Human	1.77%
Built Environment	Engineered → Built Environment	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.20%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.16%
Sediment	Environmental → Aquatic → Sediment	6.19%
Freshwater	Environmental → Aquatic → Freshwater	4.42%
Digestive System	Host-Associated → Human → Digestive System	1.77%
Marine	Environmental → Aquatic → Marine	0.89%
Unclassified	Engineered → Built Environment → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	24.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.24%
Loam	Environmental → Terrestrial → Soil → Loam	14.16%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.27%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.19%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.42%
Sand	Environmental → Terrestrial → Soil → Sand	2.65%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.77%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.19%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.42%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.42%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.65%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.65%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.77%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	17.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.08%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.08%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.19%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	5.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.42%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.54%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.54%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.65%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.65%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.77%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.89%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.89%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%
Drinking Water Pipes	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Drinking Water Pipes	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006872	Biofilm microbial communities from drinking water pipes in Singapore	Engineered	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020066	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT45_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026856	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031424	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_132983451	3300000550	Soil	MHPRSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMRHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWEQEREIPAWRYHLQ
F14TC_1033417081	3300000559	Soil	MQALSNVEILERALAKARANNPDWQPLVLGRAEALIQMGHENMVLFNRGFAQAFWGEAPHIVVSTDSSDTWSQELDKPAWRYHLQELAVA
JGI11643J11755_117545091	3300000787	Soil	MHARSHAEILERVLAKARANNPNWQPLVRHRPEVLLQMGHEHFVLFERGFAQAFWGETPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLLVML
F14TB_1071305041	3300001431	Soil	MQALNNVKILEQALAKARANNADWKPLLLNRPEDILQMGYENILLFERGFAQAFWGEAPXSVVPTDSGDTWSQDLDKPAWRYHLQ
Ga0055465_103439421	3300004013	Natural And Restored Wetlands	MQTLSNVKILELALAKARANNADWKPILLNRPEDILQMGYENMVLFERGFAQAFWGEAHRVVVPTDSGGTLVQDLDKPAWRYHLQELAVAPDLFAYLAKFL*
Ga0063356_1027130681	3300004463	Arabidopsis Thaliana Rhizosphere	MHARSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0058859_116077441	3300004798	Host-Associated	MQTLSNVKILEQALAKARANNADWKPILLNRPEDILQMGYENIVLFERGFAQAFWGEAHRIVVPTDSGDTWSQDLDKPAWRYHLQELAVAPDLFA
Ga0058860_121252422	3300004801	Host-Associated	MHARSHAEILERVLAKARANNPNWQPLVRHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0068869_1007976041	3300005334	Miscanthus Rhizosphere	MQTLSNVKILEQALAKARANNADWKPILLNRPEDILQMGYENIVLFERGFAQAFWGEAPHIVVPTDSGGALVQAIDTLAWRYHLQELAVAPDLFAYLAKFL*
Ga0070689_1008306791	3300005340	Switchgrass Rhizosphere	MHARSHTEILERVLAKARANNPNWQPLVLHRPEVLLQMGQEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0070687_1001240362	3300005343	Switchgrass Rhizosphere	MDTESHTNFCSVGGFRMHARSHAEILERVLAKARTNNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0070692_100733011	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MHARSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMGQEHFVLFERGFAQAFWGEVPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLA
Ga0070668_1022054411	3300005347	Switchgrass Rhizosphere	KILQRALAKARANNPDWKPILLNRPEDILQMGYENIVLFERGFAQAFWGEAHRIVVPTDSGDTWSQDLDKPAWRYHLQELAVAPDLFAYLAKFL*
Ga0070701_101039331	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MHARSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMGQEHFVLFERGFAQAFWGEVPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0070700_1004754451	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MQTLSNVKILEQALAKARANNADWKPILLNRPEDILQMGYENIVLFERGFAQAFWGEAHRIVVPTDSGDTWSQDLDKPAWRYHLQELAVAPDLFAYLAKFL*
Ga0070685_107121181	3300005466	Switchgrass Rhizosphere	MHARSHAEILARVLAKARANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLATFL*
Ga0070685_110452831	3300005466	Switchgrass Rhizosphere	MQALSNVEILERALAKARANNPDWKPLVLGRAEDLIQMGHENMVLFNRGFALAFWGEAPHIVVPTDSGGTLVQAIDTLAWRYHLQELAVAPDLFAYLAKFL*
Ga0070698_1011518312	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MQALSNVEILARALAKARANNPDWKPLLPDRPEDLIQMGHENMVLFNRGFAQAFWGEEPYTVVRTGSGGAWGQDSDTLAWRYHLQELAVAPDLFAYLAKFL*
Ga0070741_102786781	3300005529	Surface Soil	MQTLSNVKILELALAKARANNADWKPILLNRPEDILQMGYENMVLFERGFAQAFWGEAHRIIVPTDSGGTLVQDLDKPAWRYHLQELAVA
Ga0070686_1000541783	3300005544	Switchgrass Rhizosphere	MHARSHTEILERVLAKARANNPNWQPLVLHRPEVLLQMGQEHFVLFERGFAQAFWGEVPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0070665_1012020802	3300005548	Switchgrass Rhizosphere	MQTLSNVKILEQALAKARANNADWKPILLNRPEDILQMGYENIVLFERGFAQAFWGEAHRIVVPTDSGDTWSQDLDKPAWR
Ga0070704_1008130692	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MHARSHTEILERVLAKARANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAV
Ga0068859_1000497393	3300005617	Switchgrass Rhizosphere	MHARSHAEILARVLAKARANNPNWQPLVRHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0068861_1021084071	3300005719	Switchgrass Rhizosphere	MQALSNVKILQRALAKARANNPDWKPILLNRPEDILQMGYENMVLFERGFAQAFWGEAHRIVVPTDSGDTWSQDLDKPAWRYHLQELAVAPDLFA
Ga0068870_110792051	3300005840	Miscanthus Rhizosphere	RSHTEILERVLAKARANNPNWQPLVLHRPEVLLQMGQEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0068858_1003152262	3300005842	Switchgrass Rhizosphere	MHARSHAEILERVLAKARTNNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKF
Ga0075023_1001127162	3300006041	Watersheds	MQALSHAEILEQALAKARANNPNWQPLVLNRPEELPQIGHENFVLFERGFAQAFWGEALYTGVRIDSSGAWDQESDIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0075028_1000995351	3300006050	Watersheds	MQALSNVKIFELALAKAGTNNPNWRPILLNRPEDLLQMGHENIVLFERGFAQAFWGEAAHHIAVPTGSDGALVQDTDTPAWRYHLQELAVAPDLFAYLAKFL*
Ga0075422_103138382	3300006196	Populus Rhizosphere	MQALSNVEILERALAKARANNPDWKPLVLGRAEDLIQMGHENMVLFNRGFAQAFWGEAPHIVVPTDSGGALVQAIDTLACRYHLQELAVAPDLFAYLAKFL*
Ga0075428_1000690834	3300006844	Populus Rhizosphere	MQALNNVKILEQALAKARANNADWKPLLLNRPEDILQMGYENMVLFERGFAQAFWGEAHRIVIPTDSGGTLVQDLDKPAWRYHLKELAVAPDLFAYLAKFL*
Ga0075428_1003246592	3300006844	Populus Rhizosphere	MHARSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMGYEHFVLFERGFPQAFWGEAPYTGVRIASSRAWDQERDIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0075428_1011741731	3300006844	Populus Rhizosphere	MQALSNVEILERALAKARANNPDWKPLVLGRAEDLIQMGHENMVLFNRGFAQAFWGEAPHIVVPTDSGGALVQAIDTPAWRYHLQELAVAPNLFAYLAKFL*
Ga0075421_1008426702	3300006845	Populus Rhizosphere	MQALSNVTILERVLAKARANNPAWKPLLLNRPEDLLQMGHENIVLFERGFAQAFWGEASHVIVPTGSGGAWGQDSETPAWRYHLQELAVAPDLFAYLAKFL*
Ga0075430_1003303632	3300006846	Populus Rhizosphere	MQALSNVTILERALAKARANNPAWKPLLLNRPEDLLQMGHENIVLFERGFAQAFWGEASHVIVPTGSGGAWGQDSETPAWRYHLQELAVAPDLFAYLAKFL*
Ga0075430_1013214282	3300006846	Populus Rhizosphere	MQALNNVKILEQALAKARANNADWKPLLLNRPEDILQMGYENIVLFERGFAQAFWGEAHRIVVPTDSGDTWSQDLDKPAWRYHLQELAVAPDLFAYLAKFL*
Ga0075420_1003801721	3300006853	Populus Rhizosphere	MHARSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWEQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0101947_10173197	3300006872	Drinking Water Pipes	MQALSNVEILERALAKAKANDPDWRPIILSRPADLLQMGHENMVLFERGFARAFWGEAPHLIDPARSGGVWAQDSDTPAWRYHLQELAVAPDLFAYLAKFL*
Ga0068865_1005918961	3300006881	Miscanthus Rhizosphere	MDTESHTHCCSVGGFRLHARSHAEILERVLATARANNPNWQPLVLHRPEVRLQMGHEHFVLFERGFAQAFWGEVPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0075424_1009473332	3300006904	Populus Rhizosphere	MHARSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLATFL*
Ga0079219_102247123	3300006954	Agricultural Soil	RANNPDWKPLLLDRPEDLLQMGHENIVLFERGFAQAFWGEAPRIVVPPNSGGIVDQELDKPAWRYHLQELAVAPDLFVYLARFL*
Ga0111539_103713992	3300009094	Populus Rhizosphere	MQTLSNVKILEQALAKARANNADWKPILLNRPEDILQMGYENIVLFERGFAQAFWGETHRIVVPTDSGDTWSQDLDKPAWRYHLQELAVAPDLFAYLAKFL*
Ga0111539_117175131	3300009094	Populus Rhizosphere	MQALSNVEILERALAKARANNPDWKPLVLGRAEDLIQMGHENMVLFNRGFAQAFWGEAPHIVVPTDSGGALVQAIDTLAWRYHLQELAVAPDLFAYLAKFI*
Ga0075418_100736724	3300009100	Populus Rhizosphere	MDTESHTNFCSVGGFGMHARSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMGYEHFVLFERGFPQAFWGEAPYTGVRIASSRAWDQERDIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0111538_103529391	3300009156	Populus Rhizosphere	MHARSHAEILERGLATARANNPNWQPLVRHRPEALRQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWEQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0111538_113483532	3300009156	Populus Rhizosphere	MQTLSNVEILQRALVKARANNPDWKPLLLNRPEDILQMGYENMVLFEQGFAQAFWGEAPRIVIPTDSGGTLVQDLDKPAWRYHLKELAVAPDLFAYLAKFL*
Ga0111538_118678031	3300009156	Populus Rhizosphere	MQALSNVEILERALAKARANNPDWKPLVLGRAEDLIQMGHENMVLFNRGFAQAFWGEAPRSVVPTDSGDTGSQELDKPAWRYHLQELAVAPDL
Ga0105092_105923961	3300009157	Freshwater Sediment	MDTESHSKVRTVGGFRMQVLSHAEILERALAKARANTPNWQPLVLHRPEALLQMGHENFVLFERGFAQAFWGEAPYTGVRIASSGAWDQERDIPALRYHLQAMAVTPDLFAYLAKFL*
Ga0105070_11303531	3300009815	Groundwater Sand	MQALSNVEILERALARARANNPAWKPLLPDRPEDLIQMGHENMVLFNRGFAQAFWGKGPYTVVSAGSGGVWGQDSDTPAWRYHLQALAVAPDLFAYLAKFL*
Ga0105066_10875411	3300009822	Groundwater Sand	MQTLSNVEILERALAKARANNPDWKPLVLDRPEDLIRMGHENMVLFNRGFAQAFWGEASHPVVRTGSGGAWDQDSATPAWRYHLQELAVASDLFAYLAKFL*
Ga0126380_113725921	3300010043	Tropical Forest Soil	MQALSNVEILARALAKARANNPDWKPLVLDRPEDLIQMGHENMVLFNRDFAHAFWGTTSYTVVPAGNGGAWGQDRDTPAWRYHLQEVAVAPDLFAYLAKFL*
Ga0126384_116051151	3300010046	Tropical Forest Soil	MQALSNVEILARALAKARANNPDWKPLVLDRPEDLIQMGHENMVLFNRDFAHAFWGTTSYTVVPAGNGGAWGQDRDTPAWRYHLQELAVAPDLFAYLAKFL*
Ga0126306_107340792	3300010166	Serpentine Soil	MQAFTNVEILARALAKARANNPAWKPLLLNRPEDLLQMGHENIVLFERGFAQAFWGEAPHILIPPGSGGAWGQESETPAWRYHLQELAVALA
Ga0126376_124847151	3300010359	Tropical Forest Soil	MQALRNVEILARALAKARANNPDWKPLVLDRPEALIQMGHENMVLFNRDFAHAFWGDEPRIVVPPSSGTLGQDLDTPAWRYHLQELAVAPDLFAYLAKFL*
Ga0126372_132931562	3300010360	Tropical Forest Soil	EDSYAGAQEREILARALAKARANNPDWKPLVLDRPEDLIQMGHENMVLFNRDFAHAFWGDEPRIVVPPSSGTLGQDLDTPAWRYHLQELAVAPDLFAYLAKFL*
Ga0126377_126058331	3300010362	Tropical Forest Soil	MQALSNVEILARALAKARANNPDWKPLVLDRPEDLIQMGHENMVLFNRDFAHAFWGTTSYTVVPAGNGGAWGQDRDTPAWRYHLQELA
Ga0134127_114167522	3300010399	Terrestrial Soil	ATARANNPNWQPLVRHRPEVLRQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0134122_131357611	3300010400	Terrestrial Soil	MQALSNVEILERALAKARANNPDWKPLLLDRPEDLLQMGHENIVLFERGFAQAFWGEAHRIVVPPDSGGIVVQDLAKPAWRYHLQELAVA
Ga0134121_122373852	3300010401	Terrestrial Soil	MQALSNVEILARALAKAKVNNPDWKPLVPDRPEDLIQMGHENMVLFNRSFAQAFWGEAPHSVVSTGSGAWDQESDIPAWRYHLQAL
Ga0137410_118299891	3300012944	Vadose Zone Soil	KANNPDWKPLLPDRPEDLIHMGHENMVLFNRGFAQAFWGEEPYTVVRTGSGGVWGQDSDTLAWRYHLQELAVAPDLFAYLAKFL*
Ga0164299_116334742	3300012958	Soil	MQALSNVEILERALAKARANNPDWKPLILVRAEDLIQMGHENMVLFNRGFALAFWGEAPHIVVSTDSGDTWSQDLDKPAWRY
Ga0163162_128055921	3300013306	Switchgrass Rhizosphere	KARANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0157380_131716981	3300014326	Switchgrass Rhizosphere	MQTLSNVKILEQALAKARANNADWKPILLNRPEDILQMGYENIVLLERGFAQAFWGEAHRIVVPTDSGDTWSQDLDKPAWRYHLQELAVAPDLFAYLAKFL*
Ga0157379_116240101	3300014968	Switchgrass Rhizosphere	MHARSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYIGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0173483_105928151	3300015077	Soil	MDTESHTNFCSVGGFRMHARSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL*
Ga0132258_128023111	3300015371	Arabidopsis Rhizosphere	MEALSNVTILERVLAKAKANDPDWTPLVRDRPEALIRMGHENMVLFERGFARAFWGEAPSSVVPTESDDTWSQDLETPAWRYHLQELAVAPDLFAYLAKFL*
Ga0132256_1017700182	3300015372	Arabidopsis Rhizosphere	MQALSNVEILERALAKARANNPDWKPLVLGRAEDLIQMGHENMVLFNRGFVQAFWGEAPHIVVPTDSGGALVQAIDTLAWRYHLQELAVAPDLFAYLAKFL*
Ga0163161_101738602	3300017792	Switchgrass Rhizosphere	MQALSNVEILERALAKARANNPDWKPLVLGRAEDLIQMGHENMVLFNRGFALAFWGEAPHIVVPTDSGGTLVQAIDTLAWRYHLQELAVAPDLFAYLAKFL
Ga0163161_108466101	3300017792	Switchgrass Rhizosphere	MQTLSNVKILEQALAKARANNADWKPLLLNRPEDILQMGYENIVLFERGFAQAFWGEAHRIVVPTDSGGTLVQELDKPAWRYHLKELAVAPDLFAYLAKFL
Ga0184634_100053833	3300018031	Groundwater Sediment	MQALSNVEILERALAKARANNPDWKPLLPDRPEDLIQMGHENIVLFERGFAQAFWGEAPHIIVPTGSGGVWGQDSETPAWRHHLQELAVAPNLFAYLAKFL
Ga0184623_103280521	3300018056	Groundwater Sediment	MQALSNVEILERALTKARANNPDWKPLLLDRPEDLIQMGHENMVLFNRGFAQAFWGEAPYTVVRTDSGGAWGQDSETLAWRYHLQELAVAPDLFAYLAKFL
Ga0184612_103414051	3300018078	Groundwater Sediment	MQALSNVEILERALTKARANNPDWKPLLLDRPEDLIQMGHENMVLFNRGFAQAFWGEAPYTVVRTDSGGAWGQDSETLAWRYHLQEL
Ga0184627_103015101	3300018079	Groundwater Sediment	MQTLSNVKILERALAKARANNPAWKPLLLNRPEDLLQMGHENMVLFERGFAQAFWGEAPHIVVPTGSDGAWGQDSETPAWRYHLQALATAPDLFAYLAKFL
Ga0190270_102397601	3300018469	Soil	MQTLSNVTILERALAKARVNNPAWHPLLLNRPEDLLQMGHENIVLFERGFAQAFWGEAPHAVVSTGNGGARGQASETPAWRYHLQALATAPDLFAYLAKFL
Ga0184645_12650922	3300019233	Groundwater Sediment	MQALSNVEILERALTKARANNPDWKPLLLDRPEDLIQMGHENMVLFNRGFAQAFWGEAPYTVARTDSGGAWGQDSETLAWRYHLQELAV
Ga0184646_13857282	3300019259	Groundwater Sediment	MQALSNVEILERALTKARANNPDWKPLLLDRPEDLIQMGHENMVLFNRGFAQAFWGEAPYTVVRTDSGGAWGQDSETLAWRYHLQELAVAPDL
Ga0190267_108194552	3300019767	Soil	MQTLSNVKILELALARARANNPSWKPLLLNCPEDLLEMGHENMVLFERGFAQAFWGEGPHIIVPTGSGGILNHVETPAWRYHLQELAIAPDLFAYLAKFL
Ga0180113_10819182	3300020065	Groundwater Sediment	MQALSNVKILEQALAKARANNADWKPILLNRPEDILQMGYENIVLFERGFALAFWGKAHRIVVPTDSGGTLVQDLDKPAWRYHLQELAVAPDLFAYLAKFL
Ga0180108_10320441	3300020066	Groundwater Sediment	MQALSNVKILEQALAKARANNADWKPILLNRPEDILQMGYENIVLFERGFAQAFWGKAHRIVVPTDSGGTLVQDLDKPVWRYHLQELGVAPDLFAYLAKFL
Ga0207710_107011081	3300025900	Switchgrass Rhizosphere	MQTLSNVKILEQALAKARANNADWKPILLNRPEDILQMGYENIVLFERGFAQAFWGEAHRIVVPTDSGDTWSQDLDKPAGRYHLQELAVALDLFAYLAKFLRVLLLIGRL
Ga0207680_105778681	3300025903	Switchgrass Rhizosphere	MHARSHAEILARVLAKARANNPNWQPLVRHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL
Ga0207681_115594782	3300025923	Switchgrass Rhizosphere	MHARSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAV
Ga0207650_118148821	3300025925	Switchgrass Rhizosphere	MQALSNVEILERALAKARANNPDWKPLVLGRAEDLIQMGHENMVLFNRGFALAFWGEAPHIVVPTDSGGDLMQAIDTPAWRYHLQELAVAPDLFVYLAKFL
Ga0207670_100225396	3300025936	Switchgrass Rhizosphere	MQTLSNVKILEQALAKARANNADWKPILLNRPEDILQMGYENIVLFERGFAQAFWGEAHRIVVPTDSGDTWSQDLDKPAWRYHLQELAVAPDLFAYLAKFL
Ga0207712_108536352	3300025961	Switchgrass Rhizosphere	MHARSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL
Ga0207668_101026562	3300025972	Switchgrass Rhizosphere	MHARSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMGQEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL
Ga0207668_121663782	3300025972	Switchgrass Rhizosphere	ILERALAKARANNPDWKPLVLGRAEDLIQMGHENMVLFNRGFAQAFWGEAHRIVVPTDSGDTWSQDLDKPAWRYHLQELAVAPDLFAYLAKFL
Ga0207703_107440461	3300026035	Switchgrass Rhizosphere	MHARSHAEILERVLAKARTNNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL
Ga0207708_100340795	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MQALSNVKILEQALAKARANNADWKPLLLNRPEDILQMGYENIVLFERGFAQAFWGEAHRIVVPTDSGDTWSQDLDKPAWRYHLQELAVAPDLFAYLAKFL
Ga0207708_100740442	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MHARSHAEILERGLATARANNPNWQPLVRHRPEVLRQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL
Ga0207676_113514352	3300026095	Switchgrass Rhizosphere	MHARSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMA
Ga0207675_1002133582	3300026118	Switchgrass Rhizosphere	MQTLSNVKILEQALAKARANNADWKPLLLNRPEDILQMGYENIVLFERGFAQAFWGEAHRIVVPTDSGDTWSQDLDKPAWRYHLQELAVAPDLFAYLAKFL
Ga0207675_1003847102	3300026118	Switchgrass Rhizosphere	MHARSHTEILERVLAKARANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL
Ga0207675_1015282742	3300026118	Switchgrass Rhizosphere	MQALSNVEILERALAKARANNPDWKPLVLGRAEDLIQMGHENMVLFNRGFALAFWGEAPHIVVPTDSGGTLVQAIDTLAWRYHLQELAVAPD
Ga0209852_10108211	3300026856	Groundwater Sand	MQALSNAEILERALAKARANNPEWKPILPNRPEDLIEMGHENVVLFERGFAQAFWGMAPYTVVPASNGGSRSQDNDIPAWRYHLQGLAVAPDLFAYLAKFV
Ga0209488_102560892	3300027903	Vadose Zone Soil	MQALSNVEILERALAKARANNPDWEPLALDHPDTLIQMGHENMVLFNRGFAQAFWGEEPYTVIPAGGGSAWGQDRDVPTWRYHLQELAVAPNLFAYLAKFL
Ga0207428_106501111	3300027907	Populus Rhizosphere	MQALSNVEILERALAKARANNPDWKPLVLGRAEDLIQMGHENMVLFNRGFAQAFWGEAPHIVVPTDSGGALVQAIDTLAWRYHLQELAVAPDLFAYLAKFL
Ga0207428_108984012	3300027907	Populus Rhizosphere	MQTLSNVKILEQALAKARANNADWKPILLNRPEDILQMGYENIVLFERGFAQAFWGETHRIVVPTDSGDTWSQDLDKPAWRYHLQELAVAPDIPIRHLTAASSSF
Ga0209382_109525231	3300027909	Populus Rhizosphere	MQALNNVKILEQALAKARANNADWKPLLLNRPEDILQMGYENMVLFERGFAQAFWGEAHRIVIPTDSGGTLVQDLDKPAWRYHLKELAVAPDLFAYLAKFL
Ga0209382_114131742	3300027909	Populus Rhizosphere	KARANNPAWKPLLLNRPEDLLQMGHENIVLFERGFAQAFWGEASHVIVPTGSGGAWGQDSETPAWRYHLQELAVAPDLFAYLAKFL
Ga0209382_120823441	3300027909	Populus Rhizosphere	MHARSHAEILERVLAKARANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRY
Ga0209583_103435191	3300027910	Watersheds	MQALSHAEILEQALAKARANNPNWQPLVLNRPEELPQIGHENFVLFERGFAQAFWGEALYTGVRIDSSGAWDQESDIPAWRYHLQAMAVAPDLFAYLAKFL
Ga0268266_103267812	3300028379	Switchgrass Rhizosphere	MQTLSNVKILEQALAKARANNADWKPILLNRPEDILQMGYENIVLFERGFAQAFWGEAHRIVVPTDSGDTWSQDLDKPAWRYHLQAMAVAPDLFAYLAKFL
Ga0308206_10933871	3300030903	Soil	MQALSNVTILERALAKARANNPAWKPLLLNRPEDLLQMGHENIVLFERGFAQAFWGEAPHIIVPTGSGGAWGQDSKTPAWRYHLQELAVAPNLFAYLAKFL
Ga0308189_102109902	3300031058	Soil	MQALSNVKILELALARARENNPAWKPLLLNRPEDLLQMGHENMVLFERGFAKAFWGEAPHPIVSTGSGGVLNQDVETPAWRYHLQELAIAPDLFAYLARFL
Ga0308204_100984842	3300031092	Soil	MQALSNVKILELALARARANNPAWKPLLLNRPEDLLQMGHENMVLFERGFAQAFWGEAPHIIVPTGSGGAWGQDSETPAWRYHLQELAVAPDLFAYLAKFL
Ga0308179_10101052	3300031424	Soil	TILERALAKARANNPAWKPLLLNRPEDLLQMGHENIVLFERGFAQAFWGEVPRIVVPTGSGGAWGQDSETPAWRYHLQELAIAPDLFAYLAKFI
Ga0310892_113314291	3300031858	Soil	VLATARANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL
Ga0310902_112638321	3300032012	Soil	MHARSHAEILARVLAKARTNNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEAPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLATFL
Ga0310906_106842812	3300032013	Soil	MQTLSNVKILEQALAKARANNADWKPILLNRPEDILQMGYENIVLFERGFAQAFWGETHRIVVPTDSGDTWSQDLDKPAWRYHLQELAVAPDLFAYLAKFL
Ga0310890_103535511	3300032075	Soil	MQTLSNVKILEQALAKARANNADWKPILPNRPEDILQMGYENIVLFERGFAQAFWGEAHRIVVPTDSGDTWSQDLDKPAWRYHLQELAVAPDLFAYLAKFL
Ga0335084_109713761	3300033004	Soil	MQALSNVEILERALAKARANNPDWKPLLPNRPEDLIEMGHENMVLFNRGFAQAFWGEAPHIAVSTDSDGALVQNIDTPAWRYYLQELAVAPDLFAYLAKFL
Ga0214471_102218362	3300033417	Soil	MQALSNVDILERALAKARANNPDWKPLLLDRPEDLIRMGHENMVLFNRGFAQAFWGEAPYTVASTSSSGSAWDQDSDTLAWRYHLQELAVAPDLFAYLAKFL
Ga0247830_116995872	3300033551	Soil	ANNPNWQPLVLHRPEVLLQMGHEHFVLFERGFAQAFWGEVPYTGVRIASSGAWDQEREIPAWRYHLQAMAVAPDLFAYLAKFL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082894

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences