Metagenome / Metatranscriptome Family F082864

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082864
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	104 residues
Representative Sequence	LILRTMLALTAMSLCSALAVAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK
Number of Associated Samples	95
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.96 %
% of genes near scaffold ends (potentially truncated)	29.20 %
% of genes from short scaffolds (< 2000 bps)	75.22 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.230 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil (8.850 % of family members)
Environment Ontology (ENVO)	Unclassified (27.434 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.363 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 23.88% β-sheet: 0.00% Coil/Unstructured: 76.12%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF05960	DUF885	13.27
PF13458	Peripla_BP_6	8.85
PF02554	CstA	6.19
PF09835	DUF2062	5.31
PF00072	Response_reg	3.54
PF07995	GSDH	3.54
PF00005	ABC_tran	2.65
PF00313	CSD	2.65
PF00106	adh_short	1.77
PF03401	TctC	0.88
PF07729	FCD	0.88
PF00497	SBP_bac_3	0.88
PF14246	TetR_C_7	0.88
PF11799	IMS_C	0.88
PF16156	DUF4864	0.88
PF02798	GST_N	0.88
PF00528	BPD_transp_1	0.88
PF13607	Succ_CoA_lig	0.88
PF02321	OEP	0.88
PF07077	DUF1345	0.88
PF13722	CstA_5TM	0.88
PF01872	RibD_C	0.88
PF12704	MacB_PCD	0.88
PF13417	GST_N_3	0.88
PF03972	MmgE_PrpD	0.88
PF13411	MerR_1	0.88
PF07301	DUF1453	0.88
PF13567	DUF4131	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	13.27
COG1966	Carbon starvation protein CstA (peptide/pyruvate transporter)	Energy production and conversion [C]	6.19
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	3.54
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.77
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.88
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.88
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.88
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.88
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.88
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.88
COG4291	Uncharacterized membrane protein	Function unknown [S]	0.88
COG4846	Cytochrome c biogenesis protein CcdC	Posttranslational modification, protein turnover, chaperones [O]	0.88

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.23 %
Unclassified	root	N/A	1.77 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.23 %
Unclassified	root	N/A	1.77 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.23 %
Unclassified	root	N/A	1.77 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	93.81 %
Unclassified	root	N/A	1.77 %

Name	Rank	Taxonomy	Distribution
Oligoflexia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia	46.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	31.86 %
Unclassified	root	N/A	1.77 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Oligoflexales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales	46.90 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	9.73 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	8.85 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	1.77 %
Unclassified	root	N/A	1.77 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Oligoflexaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae	46.90 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	8.85 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	4.42 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.77 %
Unclassified	root	N/A	1.77 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.88 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Oligoflexus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus	46.90 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	8.85 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	4.42 %
Unclassified	root	N/A	1.77 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.88 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.88 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Oligoflexus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus	46.90 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	8.85 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	4.42 %
Unclassified	root	N/A	1.77 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.88 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.88 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Oligoflexus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	46.90 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	8.85 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	4.42 %
Unclassified	root	N/A	1.77 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.88 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.88 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17011845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1968	Open in IMG/M
3300000156\|NODE_c0728271	All Organisms → cellular organisms → Bacteria → Proteobacteria	7287	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105412680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	838	Open in IMG/M
3300001305\|C688J14111_10149891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	717	Open in IMG/M
3300003321\|soilH1_10060171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1843	Open in IMG/M
3300003321\|soilH1_10293543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1386	Open in IMG/M
3300004114\|Ga0062593_102641628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	571	Open in IMG/M
3300004157\|Ga0062590_100093474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	1875	Open in IMG/M
3300004479\|Ga0062595_101800559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	582	Open in IMG/M
3300004479\|Ga0062595_102608352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	507	Open in IMG/M
3300004801\|Ga0058860_11623929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	745	Open in IMG/M
3300005294\|Ga0065705_10230523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1261	Open in IMG/M
3300005328\|Ga0070676_10794517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	698	Open in IMG/M
3300005329\|Ga0070683_101476820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	653	Open in IMG/M
3300005332\|Ga0066388_100398394	All Organisms → cellular organisms → Bacteria → Proteobacteria	2022	Open in IMG/M
3300005340\|Ga0070689_100000519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	22782	Open in IMG/M
3300005345\|Ga0070692_10001736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	8114	Open in IMG/M
3300005435\|Ga0070714_101136586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	761	Open in IMG/M
3300005437\|Ga0070710_10428635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	892	Open in IMG/M
3300005437\|Ga0070710_10491106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	839	Open in IMG/M
3300005458\|Ga0070681_10021789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	6425	Open in IMG/M
3300005467\|Ga0070706_101908264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	539	Open in IMG/M
3300005518\|Ga0070699_100092717	All Organisms → cellular organisms → Bacteria	2642	Open in IMG/M
3300005526\|Ga0073909_10033808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1769	Open in IMG/M
3300005529\|Ga0070741_10026169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	8570	Open in IMG/M
3300005530\|Ga0070679_100155948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	2258	Open in IMG/M
3300005539\|Ga0068853_101094180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	768	Open in IMG/M
3300005545\|Ga0070695_100140401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1675	Open in IMG/M
3300005546\|Ga0070696_100899462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	734	Open in IMG/M
3300005713\|Ga0066905_100164995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1614	Open in IMG/M
3300005841\|Ga0068863_100113857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2577	Open in IMG/M
3300005841\|Ga0068863_101879564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	609	Open in IMG/M
3300006237\|Ga0097621_100009692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	7005	Open in IMG/M
3300006755\|Ga0079222_10069310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	1727	Open in IMG/M
3300006755\|Ga0079222_10461877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	913	Open in IMG/M
3300006755\|Ga0079222_11144304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	689	Open in IMG/M
3300006804\|Ga0079221_10219151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	1057	Open in IMG/M
3300006854\|Ga0075425_100645316	All Organisms → cellular organisms → Bacteria → Proteobacteria	1217	Open in IMG/M
3300006854\|Ga0075425_101615412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	730	Open in IMG/M
3300006871\|Ga0075434_101842087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	611	Open in IMG/M
3300006903\|Ga0075426_10015280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5477	Open in IMG/M
3300006914\|Ga0075436_100032014	All Organisms → cellular organisms → Bacteria → Proteobacteria	3623	Open in IMG/M
3300006954\|Ga0079219_10308083	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300007076\|Ga0075435_100352454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	1261	Open in IMG/M
3300009092\|Ga0105250_10034383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2034	Open in IMG/M
3300009094\|Ga0111539_10003162	All Organisms → cellular organisms → Bacteria → Proteobacteria	21795	Open in IMG/M
3300009143\|Ga0099792_10695774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	657	Open in IMG/M
3300009162\|Ga0075423_13104975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	509	Open in IMG/M
3300009553\|Ga0105249_10002663	All Organisms → cellular organisms → Bacteria → Proteobacteria	15438	Open in IMG/M
3300010046\|Ga0126384_10127836	All Organisms → cellular organisms → Bacteria → Proteobacteria	1923	Open in IMG/M
3300010371\|Ga0134125_10001504	All Organisms → cellular organisms → Bacteria → Proteobacteria	28572	Open in IMG/M
3300010371\|Ga0134125_11172753	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300010371\|Ga0134125_11261879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	807	Open in IMG/M
3300010400\|Ga0134122_10040272	All Organisms → cellular organisms → Bacteria → Proteobacteria	3565	Open in IMG/M
3300010401\|Ga0134121_10506670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	1113	Open in IMG/M
3300010403\|Ga0134123_11639538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	692	Open in IMG/M
3300010403\|Ga0134123_13286749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	521	Open in IMG/M
3300012202\|Ga0137363_11037515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	697	Open in IMG/M
3300012212\|Ga0150985_107760951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	523	Open in IMG/M
3300012469\|Ga0150984_100922348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	1229	Open in IMG/M
3300012948\|Ga0126375_11170682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	638	Open in IMG/M
3300012955\|Ga0164298_10542260	All Organisms → cellular organisms → Bacteria → Proteobacteria	787	Open in IMG/M
3300012986\|Ga0164304_10721646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	760	Open in IMG/M
3300012987\|Ga0164307_10602571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	847	Open in IMG/M
3300012988\|Ga0164306_11548660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	570	Open in IMG/M
3300013296\|Ga0157374_12372280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	558	Open in IMG/M
3300013307\|Ga0157372_11718145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	722	Open in IMG/M
3300015200\|Ga0173480_10444452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	764	Open in IMG/M
3300017792\|Ga0163161_10410615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	1087	Open in IMG/M
3300017939\|Ga0187775_10320326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	618	Open in IMG/M
3300017948\|Ga0187847_10868853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	513	Open in IMG/M
3300018064\|Ga0187773_10143634	All Organisms → cellular organisms → Bacteria → Proteobacteria	1225	Open in IMG/M
3300018468\|Ga0066662_12500074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	544	Open in IMG/M
3300019361\|Ga0173482_10101807	All Organisms → cellular organisms → Bacteria → Proteobacteria	1044	Open in IMG/M
3300021953\|Ga0213880_10024176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1369	Open in IMG/M
3300024177\|Ga0247686_1000076	All Organisms → cellular organisms → Bacteria → Proteobacteria	18749	Open in IMG/M
3300024182\|Ga0247669_1002552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4490	Open in IMG/M
3300024249\|Ga0247676_1057501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	636	Open in IMG/M
3300024284\|Ga0247671_1038381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	739	Open in IMG/M
3300025912\|Ga0207707_10003530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	13848	Open in IMG/M
3300025912\|Ga0207707_10901391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	731	Open in IMG/M
3300025917\|Ga0207660_10313804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	1251	Open in IMG/M
3300025922\|Ga0207646_11707696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	541	Open in IMG/M
3300025927\|Ga0207687_10010560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6035	Open in IMG/M
3300025929\|Ga0207664_10056103	All Organisms → cellular organisms → Bacteria → Proteobacteria	3128	Open in IMG/M
3300025935\|Ga0207709_11134567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	643	Open in IMG/M
3300025942\|Ga0207689_10000229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	49945	Open in IMG/M
3300026088\|Ga0207641_10593046	All Organisms → cellular organisms → Bacteria → Proteobacteria	1084	Open in IMG/M
3300026088\|Ga0207641_10707741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	992	Open in IMG/M
3300026088\|Ga0207641_12239292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	546	Open in IMG/M
3300027725\|Ga0209178_1269789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	619	Open in IMG/M
3300027775\|Ga0209177_10196480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	715	Open in IMG/M
3300027775\|Ga0209177_10239126	All Organisms → cellular organisms → Bacteria → Proteobacteria	665	Open in IMG/M
3300027787\|Ga0209074_10136483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	868	Open in IMG/M
3300027787\|Ga0209074_10189277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	766	Open in IMG/M
3300027821\|Ga0209811_10004336	All Organisms → cellular organisms → Bacteria	4571	Open in IMG/M
3300027910\|Ga0209583_10193550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	863	Open in IMG/M
3300028812\|Ga0247825_10796334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	682	Open in IMG/M
3300031184\|Ga0307499_10002548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4440	Open in IMG/M
3300031226\|Ga0307497_10034619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1674	Open in IMG/M
3300031538\|Ga0310888_10749837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	602	Open in IMG/M
3300031547\|Ga0310887_10037285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	2088	Open in IMG/M
3300031547\|Ga0310887_10722766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	620	Open in IMG/M
3300031562\|Ga0310886_10118962	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300031720\|Ga0307469_10651880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	948	Open in IMG/M
3300031740\|Ga0307468_100118990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	1620	Open in IMG/M
3300031944\|Ga0310884_10279462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	923	Open in IMG/M
3300032012\|Ga0310902_10103727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1526	Open in IMG/M
3300032174\|Ga0307470_11253011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	605	Open in IMG/M
3300032180\|Ga0307471_104091781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Oligoflexales → Oligoflexaceae → Oligoflexus → unclassified Oligoflexus → Oligoflexus sp.	515	Open in IMG/M
3300033412\|Ga0310810_10829242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	829	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.34%
Host-Associated	Host-Associated	24.78%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.57%
Plants	Host-Associated → Plants	23.89%
Aquatic	Environmental → Aquatic	1.77%
Human	Host-Associated → Human	0.89%
Solid Waste	Engineered → Solid Waste	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.85%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Sediment	Environmental → Aquatic → Sediment	0.89%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.89%
Digestive System	Host-Associated → Human → Digestive System	0.89%
Roots	Host-Associated → Plants → Roots	0.89%
Grass	Engineered → Solid Waste → Grass	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.33%
Loam	Environmental → Terrestrial → Soil → Loam	18.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.39%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.89%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%
Composting	Engineered → Solid Waste → Grass → Composting	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	14.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.08%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.19%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.89%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.89%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	8.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.08%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.08%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.19%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	6.19%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.54%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.77%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.77%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.89%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.89%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300024177	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK27	Environmental	Open in IMG/M
3300024182	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10	Environmental	Open in IMG/M
3300024249	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17	Environmental	Open in IMG/M
3300024284	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK12	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02972150	2088090014	Soil	MLIFTVTSLFSALAFAQSKKSDHDAPDECKRIAEACRQAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTK
NODE_07282719	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MSFRKTLVLSALCLSAGVVLAQGKKGDRGTPGPCKAIEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQTNVPGATKPLPSVDAKAVADCKAQRPKFGGGKVGSTKK*
INPhiseqgaiiFebDRAFT_1054126802	3300000364	Soil	LIVRAMLIFTVTSLFSALAFAQSKKSDHDAPDECKRIAEACRQAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTK*
C688J14111_101498911	3300001305	Soil	MFRIAALITLAGFSAGAFSQTQQGKGSEPPGACKQIAEICHNAGFIKGDWKKGDGLWRDCVDPIMQGKTSVPGATKPLPSIDGRLVADCKAKHPKFGGGKVGSTK*
soilH1_100601712	3300003321	Sugarcane Root And Bulk Soil	MHFQKILIPAALSLCCALALAQGKKGAPGPCKDLEQACKSAGFAPGDWKKGDGLWRDCVNPIMQGQTSVPGATKPLPSVDAKAVADCKAQHPKFGGGKIGSTPTKK*
soilH1_102935432	3300003321	Sugarcane Root And Bulk Soil	MHARRASLSVLLALCPVIALAQAKKGDHAPGPCKQVEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQTSVPGASKPLPAVSAGAIAECKAQHPKFGGGKVGSTPKK*
Ga0062593_1026416281	3300004114	Soil	VIVRNMLVFTAMALCSALALAQSKKSDNGAPNECKEIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGGGKVGSTK*
Ga0062590_1000934742	3300004157	Soil	LILRTMFALAAMSLCSALAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK*
Ga0062595_1018005592	3300004479	Soil	LIVRKLFVVTAVSLYSALAFAQSNKGDHNAPPNECKQIAEACRKAGFIQGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGGGKVGST*
Ga0062595_1026083521	3300004479	Soil	VMARTLLVLTALSLSSAMAFAQAKKGDHPPAECKPIEDACKQAGFIQGDWKKGDGLWRDCVNPLVQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGRGKVGST*
Ga0058860_116239292	3300004801	Host-Associated	RTMLALTAMSLCSALAVAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK*
Ga0065705_102305232	3300005294	Switchgrass Rhizosphere	LIVRNVFVLTAVSLGSTLAFAQSTKSDHNTPPNECQQIAEACRSAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTK*
Ga0070676_107945171	3300005328	Miscanthus Rhizosphere	LILRTMFALAAMSLCSALAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLV
Ga0070683_1009900132	3300005329	Corn Rhizosphere	MHPRRASIAVLLALCPVIALAQGKKGDHAPGPCKQVEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQASVPGATKPLPAVN
Ga0070683_1014768201	3300005329	Corn Rhizosphere	MIVRTALAVSALSLFPVLASAQAKAEKGVPGPCKQIAQACQQAGFVKGDFKKGDGLWRDCVDPIMQGQTNVPGATKPLPTVDANLIAACKAKRPKFGAGKVGSAK*
Ga0066388_1003983943	3300005332	Tropical Forest Soil	VIARNILTLTVLSLCSALAFAQSNKGDHGAPNECKQIADACRKAGFIQGDWKKGDGLWRDCVNPLVQGKTNVPGATKPLPSVDGKLVADCKAKHPKFGGGKVGST*
Ga0070689_1000005191	3300005340	Switchgrass Rhizosphere	PALILRTMFALAAMSLCSALAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK*
Ga0070692_100017361	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	LILRTMLALTAMSLCSALAVAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK*
Ga0070714_1011365862	3300005435	Agricultural Soil	MTFRNLLMFFALSLCVGLALAQGKKAERGTPGPCRAIEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQTNVPGATKPLPSVDAKAVTDCKAARPKFGSGKVGSTTKK*
Ga0070710_104286352	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKAIVMLAAVSLCSSLALAQGKKGQEGPPNECKQIEAACKQAGFIQGDWKKGDGLWRDCVDPIVQGKSNVPGATKPLPRVDPNLVAQCKAKHPKFGGGKVGSTK*
Ga0070710_104911061	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTFRNLLMFFALSLCVGLALAQGKKAERGTPGPCRAIEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQTNVPGATKPLPSVEAKAVSDCKAARPKFGSGKVGSTTKK*
Ga0070681_100217896	3300005458	Corn Rhizosphere	MHPRRASIAVLLALCPVIALAQGKKGDHAPGPCKQVEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQASVPGATKPLPAVNANAIAECKAQHPKFGGGKVGSTPKK*
Ga0070706_1019082641	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	KEPALILRTMFALAAMSLCSVLAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK*
Ga0070699_1000927173	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VTFRNLLMFSVLCLSAGLALAQGKKGERGTPGPCRAIEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQANVPGATKPLPSVDAKAVADCKAARPKFGGGKVGSTKK*
Ga0073909_100338082	3300005526	Surface Soil	MLVLTAMSLCSALAFAQSNKSDQGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTK*
Ga0070741_100261698	3300005529	Surface Soil	MKRALFLALLSISCAAFAQAKKGDHAAAGPQHGADPCKQIADACTKAGFIPGDWKKGDGLWRDCVDPIMQGTSSVPGATKPLPSVDPNLVAQCKAHHAKFGEGKVGSK*
Ga0070679_1001559481	3300005530	Corn Rhizosphere	PIMHPRRASIAVLLALCPVIALAQGKKGDHAPGPCKQVEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQASVPGATKPLPAVNANAIAECKAQHPKFGGGKVGSTPKK*
Ga0068853_1010941802	3300005539	Corn Rhizosphere	MIVRTALAVSALSLFPVLASAQAKAEKGVPGPCKQIAQACQQAGFVKGDFKKGDGLWRDCVDPIMQGQTNVPGATKPLPTVDANLIAACKAKRPKFGAGKVGSTK*
Ga0068853_1018746381	3300005539	Corn Rhizosphere	MHPRRASIAVLLALCPVIALAQGKKGDHAPGPCKQVEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQASVPGATKPLPAVNANAIA
Ga0070695_1001404013	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MSVRKTLVFCALCLSAGLVLAQGKKGDRGAPGPCKAIEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQTNVPGATKPLPSVDAKAVADCKAQHPKFGGGKVGSTKK*
Ga0070696_1008994621	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MAFRNVLMFSALSLCASLALAQGKKAERGTPGPCRAIEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQTNVPGATKPLPSVDAKAVADCKTARPKFGSGKVGSTTKK*
Ga0066905_1001649952	3300005713	Tropical Forest Soil	VIVRNILALTVLSLCSALAFAQSNKGDHGAPNECKQIADACRKAGFIQGDWKKGDGLWRDCVNPLVQGKTNVPGATKPLPSVDGKLVADCKAKHPKFG
Ga0068863_1001138572	3300005841	Switchgrass Rhizosphere	LIARALFVLTAISLCPAPAFPQGKKSDHDAPDECKHIAEACRQAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTK*
Ga0068863_1018795641	3300005841	Switchgrass Rhizosphere	RRRRGVFPRAYPAFQGKELAVIVRNMLVFTAMALCSALALAQSKKSDNGAPNECKEIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGGGKVGSTK*
Ga0097621_1000096927	3300006237	Miscanthus Rhizosphere	LILRTMFALAAVSLCSALAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK*
Ga0079222_100693102	3300006755	Agricultural Soil	MLFRNVLMFSALSLCAGLALAQGKKAERGTPGPCRAVEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQTNVPGATKPLPSVDAKAVADCKSARPKFGSGKVGSTTKK*
Ga0079222_104618772	3300006755	Agricultural Soil	VTLQKTLTLAVLSLFAAVAVAQGKKGDAPPGPCKQIEQACKTAGFIKGDWKKGDGLWRDCVDPIMQGQSNVAGATKPLPSVDAKAIADCKAQHPKFGHGKVGSAQK*
Ga0079222_111443041	3300006755	Agricultural Soil	VMARTLLVLTALSLSSALAFAQAKKGDHPPAECKPIEDACKQAGFIQGDWKKGDGLWRDCVNPLMQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTPTSTTK*
Ga0079221_102191512	3300006804	Agricultural Soil	VTLQKTLTLAVLSLFAAVAVAQGKKGDGPPGPCKQIEQACKTAGFIKGDWKKGDGLWRDCVDPIMQGQSNVAGATKPLPSVDAKAIADCKAQHPKFGHGKVGSAQK*
Ga0075425_1006453162	3300006854	Populus Rhizosphere	VTFRNFLIFSVLCLSAGLALAQGKKGERGTPGPCKAVEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQANVPGATKPLPSVDAKAVADCKAARPKFGGGKVGSTKK*
Ga0075425_1016154122	3300006854	Populus Rhizosphere	VMSRTLLVLTALSLSSTLAFAQAKKGDHPPAECKPIEDACKQAGFIQGDWKKGDGLWRDCVNPLMQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSKPTSTTK*
Ga0075434_1018420872	3300006871	Populus Rhizosphere	VMSRTLLVLTALSLSSTLAFAQAKKGDHPPAECKPIEDACKQAGFIQGDWKKGDGLWRDCVNPLMQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTPTSTTK*
Ga0075426_100152806	3300006903	Populus Rhizosphere	MFSVLCLSAGLALAQGKKGERGTPGPCKAVEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQANVPGATKPLPSVDAKAVADCKAARPKFGGGKVGSTKK*
Ga0075436_1000320147	3300006914	Populus Rhizosphere	LAQGKKAERGTPGPCRAVEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQTNVPGATKPLPSVDAKAVADCKSARPKFGSGKVGSTTKK*
Ga0079219_103080831	3300006954	Agricultural Soil	MAFHRTFALLVLTACPLLVLAQGKKADHAASGPCKAIEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGTTNVPGATKPLPTVDAKAIADSKAQHPKFGGGKVGS
Ga0075435_1003524541	3300007076	Populus Rhizosphere	MIVRKLFALTALSLCSTLAFAQGQKGDHSAPPNECKQIAEACRKAGFIQGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSKPTSTTK*
Ga0105250_100343832	3300009092	Switchgrass Rhizosphere	MFALAAMSLCSALAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK*
Ga0111539_100031622	3300009094	Populus Rhizosphere	MAFAQAKKGDHPPAECKPIEDACKQAGFIQGDWKKGDGLWRDCVNPLVQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGRGKVGST*
Ga0099792_106957742	3300009143	Vadose Zone Soil	VSFQKILILAALSLCPALALAQGKKDERGVPGPCKQVEQACKNAGFIPGDWKKGDGLWRDCVDPIMQGQTSVPGATKPLPSVDAKAVADCKAQHPKFGGGKIGSTKK*
Ga0075423_131049752	3300009162	Populus Rhizosphere	LCSALAFAQSNKGDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPGVDGKLVADCKAKHPKFGGGKVGSTK*
Ga0105249_1000266319	3300009553	Switchgrass Rhizosphere	MFALAAMSLCSALAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLDADCKAKHPKFGGGKVGSAK*
Ga0126384_101278362	3300010046	Tropical Forest Soil	VIRRTLLVLTALSLSPALAFAQAKKGDHPPAECKPIEDACKQAGFIQGDWKKGDGLWRDCVNPIMQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGGGKVGSTPTSTTK*
Ga0134125_1000150430	3300010371	Terrestrial Soil	MFALAAVSLCSALAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK*
Ga0134125_111727532	3300010371	Terrestrial Soil	MLALTAMSLCSALAVAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK*
Ga0134125_112618791	3300010371	Terrestrial Soil	MSVRKTLVLCALCLSAGLVLAQGKKGDRGAPGPCKAIEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQTNVPGATKPLPSVDAKAVADCKAQHPKFGGGKVGSTKK*
Ga0134122_100402722	3300010400	Terrestrial Soil	MELIVIVRRTLILTAMSLCSALAFAQSNKGDHGAPDECKQVAEACRQAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGGGKVGSTK*
Ga0134121_105066702	3300010401	Terrestrial Soil	RAAVQPRLSAGQVRRIKELALIVRKLFVVTAVSLYSALAFAQSNKGDHNAPPNECKQIAEACRKAGFIQGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGGGKVGST*
Ga0134123_116395382	3300010403	Terrestrial Soil	LIVRKLFVVTAVSLYSALAFAQSNKGDHNAPPNECKQIAEACRKAGFIQGDWKKGDGLWRDCVNPIVQGKTSAPGATKPLPSVDAKLVADCKAKHPKFGGGKVGST*
Ga0134123_132867492	3300010403	Terrestrial Soil	LCSALALAQSKKSDNGAPNECKEIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGGGKVGSTK*
Ga0137363_110375151	3300012202	Vadose Zone Soil	VSFQKILILAALSLCSALALAQGKKDGRDVPGPCKQVEQACKNAGFIPGDWKKGDGLWRDCVDPIMQGQTSVPGATKPLPSVDAKAVADCKAQHPKFGRGKVGSAKK*
Ga0150985_1077609512	3300012212	Avena Fatua Rhizosphere	MIYQRTLILAALSLFAVSALAQGKKGEHAPGPCKTVEQACKSAGFIKGDWKKGDGLWRDCVDPIMQGQTNVPGATKPLPTVDGKAIAECKAQHPKFGGGKVGSTKK*
Ga0150984_1009223481	3300012469	Avena Fatua Rhizosphere	MFIQKDLTMTFQRTFALLALTACPVLVLAQAKKADHGAPGPCKAVEQACKNAGFIRGDWKKGDGLWRDCVDPIMQGTMNVPAATKPLPTVDAKAIADCKAEHPKFGGGKVGSTQKKNQ*
Ga0126375_111706822	3300012948	Tropical Forest Soil	MVRTTLVSTALCLCSALAFAQNNKGDHGAPNECKEIADACRKAGFIQGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGGGKVGST*
Ga0164298_105422602	3300012955	Soil	MLVLTANKSDQGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTK*
Ga0164304_107216461	3300012986	Soil	QHLTPEDPTLIVRTMLVLTAMSLCSALAFAQSNKSDQGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTK*
Ga0164307_106025711	3300012987	Soil	MFALAAMSLCSALAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTK*
Ga0164306_115486602	3300012988	Soil	MFALAAMSLCSALAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCK
Ga0157374_123722802	3300013296	Miscanthus Rhizosphere	MAFAQAKKGDHPPAECKPIEDACKQAGFIQGDWKKGDGLWRDCVNPLVQGNTSVPGATKPLPSVDGKLVADCKAKHPKFGRGKVGST*
Ga0157372_117181452	3300013307	Corn Rhizosphere	MTSQTASISILLALCPVVAFAQAKKGDHAPGPCKQVEQACKNAGFIRGDWKKGDGLWRDCVDPIMQGQTNVPGATKPLPRVDANAIAECKAQHPKFGGGKVGSTPKK*
Ga0173480_104444522	3300015200	Soil	MLVFTAMALCSALALAQSMKSDNGAPNECKEIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTRVPGATKPLPSVDGKLVADCKAKHPKFGGGKVGSTK*
Ga0163161_104106152	3300017792	Switchgrass Rhizosphere	LILRTMLALTAMSLCSALAVAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK
Ga0187775_103203261	3300017939	Tropical Peatland	MIVRTVLIATALSLCSAPALAQGKKDGAPSSCQQIAKACQQAGFIKGDWKKGDGLWRDCVDPIMQGKTSVPGATKPLPSIDPNLVADCKAKHPKYGGGKVGSGK
Ga0187847_108688531	3300017948	Peatland	MTQKLLILFTALSVACISALAGPGQTGNSGQAPGPCKQIAQACQNAGFIKGDWKKGDGLWRDCVDPIVQGQTNVPGATKPLPTVDPSVVAACKAKHPKYGEGKVGSVNNTGNQTGH
Ga0187773_101436342	3300018064	Tropical Peatland	MIVRTVLIATALSLCSAPALAQGKKDGAPSSCQQIAKACQQAGFIKGDWKKGDGLWRDCVDPIMQGKTSVPGATKPLPSVDPNLVADCKAKHPKYGGGKVGSGK
Ga0066662_125000741	3300018468	Grasslands Soil	VAMCSSLALAQGKKGQEGPPNECKQIEAACKQAGFIQGDWKKGDGLWRDCVDPIVQGKSNVPGATKPLPRVDPNLVAQCKAKHPKFGGGKVGSTK
Ga0173482_101018072	3300019361	Soil	VIVRNMLVFTAMALCSALALAQSKKSDNGAPNECKEIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK
Ga0213880_100241763	3300021953	Exposed Rock	MKAIPILVILSMCSSLALAQGKKGQEGPPNECKQIEAACKQAGFIQGDWKKGDGLWRDCVDPIVQGQTNVAGATKPLPRVDPGLVAACKAKHPKFGGGKVGSTK
Ga0247686_10000764	3300024177	Soil	LILRTMFALAAMSLCSALAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK
Ga0247669_10025525	3300024182	Soil	VMARTLLVLTALSLSSAMAFAQAKKGDHPPAECKPIEDACKQAGFIQGDWKKGDGLWRDCVNPLVQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGRGKVGST
Ga0247676_10575012	3300024249	Soil	VMARTLLVLTALSLSSAMAFAQAKKGDHPPAECKPIEDACKQAGFIQGDWKKGDGLWRDCVNPLVQGKTSVPGATKPLPSVDGKLVA
Ga0247671_10383812	3300024284	Soil	MLALTAMSLCSALAVAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK
Ga0207707_1000353015	3300025912	Corn Rhizosphere	MHPRRASIAVLLALCPVIALAQGKKGDHAPGPCKQVEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQASVPGATKPLPAVNANAIAECKAQHPKFGGGKVGSTPKK
Ga0207707_109013912	3300025912	Corn Rhizosphere	MIVRTALAVSALSLFPVLASAQAKAEKGVPGPCKQIAQACQQAGFVKGDFKKGDGLWRDCVDPIMQGQTNVPGATKPLPTVDANLIAACKAKRPKFGAGKVGSAK
Ga0207660_103138041	3300025917	Corn Rhizosphere	IMHPRRASIAVLLALCPVIALAQGKKGDHAPGPCKQVEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQASVPGATKPLPAVNANAIAECKAQHPKFGGGKVGSTPKK
Ga0207646_117076961	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LILRTMFALAAMSLCSALAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPLVQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGRGKVGST
Ga0207687_100105606	3300025927	Miscanthus Rhizosphere	LILRTMFALAAMSLCSALAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHP
Ga0207664_100561034	3300025929	Agricultural Soil	MTFRNLLMFFALSLCVGLALAQGKKAERGTPGPCRAIEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQTNVPGATKPLPSVEAKAVSDCKAARPKFGSGKVGSTTKK
Ga0207709_111345672	3300025935	Miscanthus Rhizosphere	SVTVMARTLLVLTALSLSSAMAFAQAKKGDHPPAECKPIEDACKQAGFIQGDWKKGDGLWRDCVNPLVQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGRGKVGST
Ga0207689_100002291	3300025942	Miscanthus Rhizosphere	LILRTMLALTAMSLCSALAVAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVG
Ga0207641_105930462	3300026088	Switchgrass Rhizosphere	VIVRNMLVFTAMALCSALALAQSKKSDNGAPNECKEIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGGGKVGSTK
Ga0207641_107077412	3300026088	Switchgrass Rhizosphere	LIARALFVLTAISLCPAPAFPQGKKSDHDAPDECKHIAEACRQAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTK
Ga0207641_122392922	3300026088	Switchgrass Rhizosphere	VMARTLLVLTALSLSSAMAFAQAKKGDHPPAECKPIEDACKQAGFIQGDWKKGDGLWRDCVNPLVQGKTSVPGATKPLPSVDGKLVADCKAKHPKF
Ga0209178_12697891	3300027725	Agricultural Soil	IVTLQKTLTLAVLSLFAAVAVAQGKKGDAPPGPCKQIEQACKTAGFIKGDWKKGDGLWRDCVDPIMQGQSNVAGATKPLPSVDAKAIADCKAQHPKFGHGKVGSAQK
Ga0209177_101964802	3300027775	Agricultural Soil	VTLQKTLTLAVLSLFAAVAVAQGKKGDGPPGPCKQIEQACKTAGFIKGDWKKGDGLWRDCVDPIMQGQSNVAGATKPLPSVDAKAIADCKAQHPKFGHGKVGS
Ga0209177_102391262	3300027775	Agricultural Soil	VMSRTLLVLTALSLSSTLAFAQAKKGDHPPAECKPIEDACKQAGFIQGDWKKGDGLWRDCVNPLMQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSKPTSTTK
Ga0209074_101364832	3300027787	Agricultural Soil	MLFRNVLMFSALSLCAGLALAQGKKAERGTPGPCRAVEQACKNAGFIQGDWKKGDGLWRDCVDPIMQGQTNVPGATKPLPSVDAKAVADCKSARPKFGSGKVGSTTKK
Ga0209074_101892772	3300027787	Agricultural Soil	VTLQKTLTLAVLSLFAAVAVAQGKKGDAPPGPCKQIEQACKTAGFIKGDWKKGDGLWRDCVDPIMQGQSNVAGATKPLPSVDAKAIADCKAQHPKFGHGKVGSAQK
Ga0209811_100043362	3300027821	Surface Soil	MLVLTAMSLCSALAFAQSNKSDQGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTK
Ga0209583_101935502	3300027910	Watersheds	VSFQKILVLAALSLCTVVALAQGKKGERGAPGPCKAVEQACKNAGFIPGDWKKGDGLWRDCVDPIMQGRTSVPGATKPLPSVDAKAVADCKAQHPKFGGGKVGSTPGK
Ga0247825_107963341	3300028812	Soil	SLCSALAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK
Ga0307499_100025483	3300031184	Soil	VIVRNVLVFTAMALCSALALAQSKKSDHGAPNECQEIAEACKKAGFIKGDWKKGDGLWRDCVNPIVQGKANVPGATKPLPSVDARLVADCKAKHPKFGGGKVGSTK
Ga0307497_100346192	3300031226	Soil	VIFRTMLLLTAMSLCCAPAFAQGKKSDHGAPEECKVIADACRKAGFIQGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPSVDGKLVADCKAKHPKFGGGKVGSIK
Ga0310888_107498372	3300031538	Soil	LIVRNVFVLTAVSLGSTLAFAQSTKSDHNTPPNECQQIAEACRSAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK
Ga0310887_100372852	3300031547	Soil	LCSALAFAQGNKSDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSAK
Ga0310887_107227661	3300031547	Soil	PAFPQGKKSDHDAPDECKHIAEACRQAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTK
Ga0310886_101189622	3300031562	Soil	LIVRNVFVLTAVSLGSTLAFAQSTKSDHNTPPNECQQIAEACRSAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTK
Ga0307469_106518801	3300031720	Hardwood Forest Soil	MELTVIVRRTLILIAVSLCSALAFAQSNKGDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTK
Ga0307468_1001189901	3300031740	Hardwood Forest Soil	VIVRRTLILIAVSLCSALAFAQSNKGDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGT
Ga0310884_102794621	3300031944	Soil	LIVRNVFVLTAVSLGSTLAFAQSTKSDHNTPPNECQQIAEACRSAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAK
Ga0310902_101037271	3300032012	Soil	LIVRNVFVLTAVSLGSTLAFAQSTKSDHNTPPNECQQIAEACRSAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADC
Ga0307470_112530111	3300032174	Hardwood Forest Soil	MELTVIVRRTLILIAVSLCSALAFAQSNKGDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVG
Ga0307471_1040917812	3300032180	Hardwood Forest Soil	AMELTVIVRRTLILIAVSLCSALAFAQSNKGDHGAPDECKQIAEACRKAGFIKGDWKKGDGLWRDCVNPIVQGKTSVPGATKPLPAVDGKLVADCKAKHPKFGGGKVGSTK
Ga0310810_108292422	3300033412	Soil	MTFQTASISILLALCPVVAFAQAKKGDHAPGPCKQVEQACKNAGFIRGDWKKGDGLWRDCVDPIMQGQTNVPGATKPLPRVDANAIAECKAQHPKFGGGKVGSTPKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082864

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences