Metagenome / Metatranscriptome Family F082780

Basic Information
Family ID	F082780
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	40 residues
Representative Sequence	GATGFDVGCEPSGAYRGAVPSLITLQIIVANDDNYALAA
Number of Associated Samples	107
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	16.07 %
% of genes near scaffold ends (potentially truncated)	84.96 %
% of genes from short scaffolds (< 2000 bps)	94.69 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Most Common Taxonomy
Group	Unclassified (76.106 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.319 % of family members)
Environment Ontology (ENVO)	Unclassified (39.823 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.133 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.31% β-sheet: 0.00% Coil/Unstructured: 62.69%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF01668	SmpB	7.96
PF03364	Polyketide_cyc	2.65
PF04355	SmpA_OmlA	0.88
PF00072	Response_reg	0.88
PF14525	AraC_binding_2	0.88
PF00795	CN_hydrolase	0.88
PF01628	HrcA	0.88
PF15780	ASH	0.88
PF07715	Plug	0.88
PF04338	DUF481	0.88
PF14528	LAGLIDADG_3	0.88
PF03167	UDG	0.88
PF03658	Ub-RnfH	0.88
PF01042	Ribonuc_L-PSP	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0691	tmRNA-binding protein	Posttranslational modification, protein turnover, chaperones [O]	7.96
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.88
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.88
COG1420	Transcriptional regulator of heat shock response	Transcription [K]	0.88
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.88
COG2913	Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex	Cell wall/membrane/envelope biogenesis [M]	0.88
COG2914	Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH superfamily	Defense mechanisms [V]	0.88
COG3137	Putative salt-induced outer membrane protein YdiY	Cell wall/membrane/envelope biogenesis [M]	0.88
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.11 %
All Organisms	root	All Organisms	23.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.11 %
cellular organisms	root	All Organisms → cellular organisms	23.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.11 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.01 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.11 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	12.39 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.11 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1.77 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	1.77 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.88 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.88 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.88 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.11 %
Halothiobacillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Halothiobacillaceae	1.77 %
Betaproteobacteria bacterium 13_1_40CM_4_64_4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_40CM_4_64_4	0.88 %
Morganellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae	0.88 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.88 %
Azonexaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae	0.88 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.88 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.11 %
Halothiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Halothiobacillaceae → Halothiobacillus	1.77 %
Xenorhabdus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Xenorhabdus	0.88 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	0.88 %
Dechloromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas	0.88 %
Massilia group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group	0.88 %
Betaproteobacteria bacterium 13_1_40CM_4_64_4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_40CM_4_64_4	0.88 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.11 %
Halothiobacillus neapolitanus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Halothiobacillaceae → Halothiobacillus → Halothiobacillus neapolitanus	1.77 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	0.88 %
Xenorhabdus nematophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Xenorhabdus → Xenorhabdus nematophila	0.88 %
Massilia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia	0.88 %
Dechloromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas	0.88 %
Betaproteobacteria bacterium 13_1_40CM_4_64_4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_40CM_4_64_4	0.88 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.11 %
Halothiobacillus neapolitanus c2	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Halothiobacillaceae → Halothiobacillus → Halothiobacillus neapolitanus → Halothiobacillus neapolitanus c2	1.77 %
unclassified Massilia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → unclassified Massilia	0.88 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	0.88 %
Xenorhabdus nematophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Xenorhabdus → Xenorhabdus nematophila	0.88 %
Dechloromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas	0.88 %
Betaproteobacteria bacterium 13_1_40CM_4_64_4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_40CM_4_64_4	0.88 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.11 %
Halothiobacillus neapolitanus c2	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Halothiobacillaceae → Halothiobacillus → Halothiobacillus neapolitanus → Halothiobacillus neapolitanus c2	1.77 %
Massilia sp. 9I	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → unclassified Massilia → Massilia sp. 9I	0.88 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	0.88 %
Xenorhabdus nematophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Xenorhabdus → Xenorhabdus nematophila	0.88 %
Dechloromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas	0.88 %
Betaproteobacteria bacterium 13_1_40CM_4_64_4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_40CM_4_64_4	0.88 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000736\|JGI12547J11936_1090376	Not Available	560	Open in IMG/M
3300001150\|JGI12672J13324_102775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	643	Open in IMG/M
3300001545\|JGI12630J15595_10032194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1080	Open in IMG/M
3300001593\|JGI12635J15846_10169626	All Organisms → cellular organisms → Bacteria → Proteobacteria	1475	Open in IMG/M
3300002245\|JGIcombinedJ26739_100876238	Not Available	779	Open in IMG/M
3300002661\|Ga0005496J37278_100822	Not Available	585	Open in IMG/M
3300004631\|Ga0058899_10110128	Not Available	656	Open in IMG/M
3300004631\|Ga0058899_10143666	Not Available	671	Open in IMG/M
3300004631\|Ga0058899_10214456	Not Available	500	Open in IMG/M
3300004774\|Ga0007794_10234515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	545	Open in IMG/M
3300005181\|Ga0066678_10964850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	554	Open in IMG/M
3300005434\|Ga0070709_10373367	All Organisms → cellular organisms → Bacteria → Proteobacteria	1059	Open in IMG/M
3300005506\|Ga0068912_10108384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Xenorhabdus → Xenorhabdus nematophila	507	Open in IMG/M
3300005535\|Ga0070684_100209314	All Organisms → cellular organisms → Bacteria → Proteobacteria	1777	Open in IMG/M
3300005610\|Ga0070763_10366303	Not Available	804	Open in IMG/M
3300005844\|Ga0068862_102515386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	527	Open in IMG/M
3300005921\|Ga0070766_10457319	Not Available	843	Open in IMG/M
3300006102\|Ga0075015_100758382	Not Available	580	Open in IMG/M
3300006354\|Ga0075021_10621195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_40CM_4_64_4	691	Open in IMG/M
3300006641\|Ga0075471_10363768	Not Available	729	Open in IMG/M
3300006938\|Ga0081245_1019742	Not Available	644	Open in IMG/M
3300009684\|Ga0114958_10000038	All Organisms → cellular organisms → Bacteria → Proteobacteria	105210	Open in IMG/M
3300009868\|Ga0130016_10072750	All Organisms → cellular organisms → Bacteria	3261	Open in IMG/M
3300010069\|Ga0127467_145780	Not Available	570	Open in IMG/M
3300010100\|Ga0127440_1093516	Not Available	1364	Open in IMG/M
3300010101\|Ga0127481_1020549	Not Available	690	Open in IMG/M
3300010132\|Ga0127455_1059920	Not Available	611	Open in IMG/M
3300010162\|Ga0131853_11276571	Not Available	545	Open in IMG/M
3300010361\|Ga0126378_12198758	Not Available	629	Open in IMG/M
3300010361\|Ga0126378_13079960	Not Available	531	Open in IMG/M
3300010375\|Ga0105239_10904120	Not Available	1013	Open in IMG/M
3300010862\|Ga0126348_1170058	Not Available	690	Open in IMG/M
3300010864\|Ga0126357_1079445	Not Available	685	Open in IMG/M
3300011120\|Ga0150983_14952461	Not Available	629	Open in IMG/M
3300012181\|Ga0153922_1049984	Not Available	929	Open in IMG/M
3300012356\|Ga0137371_11297085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	539	Open in IMG/M
3300012690\|Ga0157575_105630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Halothiobacillaceae → Halothiobacillus → Halothiobacillus neapolitanus → Halothiobacillus neapolitanus c2	616	Open in IMG/M
3300012703\|Ga0157572_1148522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Halothiobacillaceae → Halothiobacillus → Halothiobacillus neapolitanus → Halothiobacillus neapolitanus c2	550	Open in IMG/M
3300012918\|Ga0137396_10161946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1633	Open in IMG/M
3300012943\|Ga0164241_10046958	All Organisms → cellular organisms → Bacteria → Proteobacteria	3180	Open in IMG/M
3300013297\|Ga0157378_11755185	Not Available	668	Open in IMG/M
3300014166\|Ga0134079_10069082	All Organisms → cellular organisms → Bacteria → Proteobacteria	1286	Open in IMG/M
3300017999\|Ga0187767_10220661	Not Available	609	Open in IMG/M
3300019213\|Ga0179950_1221129	Not Available	718	Open in IMG/M
3300019255\|Ga0184643_1084512	Not Available	629	Open in IMG/M
3300019264\|Ga0187796_1495426	Not Available	508	Open in IMG/M
3300020157\|Ga0194049_1000224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	20545	Open in IMG/M
3300020582\|Ga0210395_10416728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1010	Open in IMG/M
3300021069\|Ga0194062_1128140	Not Available	753	Open in IMG/M
3300021307\|Ga0179585_1110857	Not Available	647	Open in IMG/M
3300021404\|Ga0210389_11499646	Not Available	513	Open in IMG/M
3300022467\|Ga0224712_10491788	Not Available	592	Open in IMG/M
3300022504\|Ga0242642_1096144	Not Available	514	Open in IMG/M
3300022505\|Ga0242647_1023117	Not Available	635	Open in IMG/M
3300022522\|Ga0242659_1054115	Not Available	716	Open in IMG/M
3300022523\|Ga0242663_1117223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → unclassified Massilia → Massilia sp. 9I	546	Open in IMG/M
3300022529\|Ga0242668_1028488	All Organisms → cellular organisms → Bacteria → Proteobacteria	895	Open in IMG/M
3300022532\|Ga0242655_10048742	Not Available	1037	Open in IMG/M
3300022712\|Ga0242653_1045780	Not Available	699	Open in IMG/M
3300022716\|Ga0242673_1083860	Not Available	592	Open in IMG/M
3300023708\|Ga0228709_1086553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas	634	Open in IMG/M
3300025386\|Ga0208585_1058892	Not Available	504	Open in IMG/M
3300025941\|Ga0207711_10699514	Not Available	945	Open in IMG/M
3300026429\|Ga0255253_1087471	Not Available	500	Open in IMG/M
3300026498\|Ga0257156_1049656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	863	Open in IMG/M
3300027050\|Ga0209325_1037957	Not Available	581	Open in IMG/M
3300027110\|Ga0208488_1064602	Not Available	613	Open in IMG/M
3300027388\|Ga0208995_1014430	All Organisms → cellular organisms → Bacteria → Proteobacteria	1352	Open in IMG/M
3300027583\|Ga0209527_1013160	All Organisms → cellular organisms → Bacteria → Proteobacteria	1779	Open in IMG/M
3300027603\|Ga0209331_1069376	Not Available	880	Open in IMG/M
3300027667\|Ga0209009_1096680	Not Available	749	Open in IMG/M
3300027727\|Ga0209328_10168089	Not Available	665	Open in IMG/M
3300027889\|Ga0209380_10802959	Not Available	533	Open in IMG/M
3300027894\|Ga0209068_10655695	Not Available	613	Open in IMG/M
3300028112\|Ga0256335_1127067	Not Available	667	Open in IMG/M
3300028530\|Ga0255279_1067908	Not Available	608	Open in IMG/M
3300029636\|Ga0222749_10823841	Not Available	507	Open in IMG/M
3300029701\|Ga0222748_1063359	Not Available	658	Open in IMG/M
3300030525\|Ga0210273_1246711	Not Available	607	Open in IMG/M
3300030545\|Ga0210271_10803192	Not Available	716	Open in IMG/M
3300030581\|Ga0210270_1237435	Not Available	712	Open in IMG/M
3300030596\|Ga0210278_1059001	Not Available	760	Open in IMG/M
3300030596\|Ga0210278_1175681	Not Available	542	Open in IMG/M
3300030730\|Ga0307482_1108183	Not Available	769	Open in IMG/M
3300030730\|Ga0307482_1314105	Not Available	507	Open in IMG/M
3300030740\|Ga0265460_11263519	Not Available	714	Open in IMG/M
3300030776\|Ga0075396_1002315	Not Available	707	Open in IMG/M
3300030803\|Ga0074037_1014109	Not Available	572	Open in IMG/M
3300030805\|Ga0265756_108771	Not Available	631	Open in IMG/M
3300030833\|Ga0265736_101028	Not Available	878	Open in IMG/M
3300030841\|Ga0075384_10058921	Not Available	708	Open in IMG/M
3300030884\|Ga0265758_106833	Not Available	570	Open in IMG/M
3300030917\|Ga0075382_10011673	Not Available	670	Open in IMG/M
3300030923\|Ga0138296_1854105	Not Available	536	Open in IMG/M
3300030945\|Ga0075373_11660197	Not Available	693	Open in IMG/M
3300030998\|Ga0073996_12381906	Not Available	815	Open in IMG/M
3300031022\|Ga0138301_1542128	Not Available	685	Open in IMG/M
3300031082\|Ga0308192_1049571	Not Available	628	Open in IMG/M
3300031128\|Ga0170823_13501625	Not Available	615	Open in IMG/M
3300031231\|Ga0170824_118789941	Not Available	653	Open in IMG/M
3300031411\|Ga0102761_12688922	Not Available	677	Open in IMG/M
3300031572\|Ga0318515_10477517	Not Available	666	Open in IMG/M
3300031640\|Ga0318555_10488550	Not Available	667	Open in IMG/M
3300031748\|Ga0318492_10508687	Not Available	639	Open in IMG/M
3300031962\|Ga0307479_10302256	Not Available	1581	Open in IMG/M
3300032067\|Ga0318524_10539997	Not Available	613	Open in IMG/M
3300032121\|Ga0316040_114797	Not Available	572	Open in IMG/M
3300032121\|Ga0316040_115407	Not Available	565	Open in IMG/M
3300032739\|Ga0315741_11107236	Not Available	708	Open in IMG/M
3300032892\|Ga0335081_11791969	Not Available	664	Open in IMG/M
3300032893\|Ga0335069_12580865	Not Available	524	Open in IMG/M
3300033134\|Ga0335073_10132556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	3179	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.92%
Host-Associated	Host-Associated	5.31%
Engineered	Engineered	1.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.76%
Aquatic	Environmental → Aquatic	14.16%
Plants	Host-Associated → Plants	3.54%
Wastewater	Engineered → Wastewater	1.77%
Arthropoda	Host-Associated → Arthropoda	0.89%
Fungi	Host-Associated → Fungi	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.76%
Freshwater	Environmental → Aquatic → Freshwater	10.62%
Sediment	Environmental → Aquatic → Sediment	2.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.65%
Marine	Environmental → Aquatic → Marine	0.89%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%
Mycelium	Host-Associated → Fungi → Mycelium	0.89%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.89%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.98%
Loam	Environmental → Terrestrial → Soil → Loam	19.47%
Lake	Environmental → Aquatic → Freshwater → Lake	4.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.42%
River	Environmental → Aquatic → Freshwater → River	2.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.65%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.77%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Creek	Environmental → Aquatic → Freshwater → Creek	0.89%
Coastal	Environmental → Aquatic → Marine → Coastal	0.89%
Sand	Environmental → Terrestrial → Soil → Sand	0.89%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.89%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.89%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.63%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.70%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	4.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.42%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	2.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.89%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.89%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.89%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.89%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.89%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.32%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	15.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.19%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.42%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	2.65%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.65%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.77%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	1.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.77%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.77%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment	0.89%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.89%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.89%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.89%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.89%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.89%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.89%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.89%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000736	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011	Environmental	Open in IMG/M
3300001150	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002661	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF145 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004774	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005506	Soil microbial communities from Colorado Plateau, USA - Soil Crust after dry out 3A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006641	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA	Environmental	Open in IMG/M
3300006938	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A001 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300009684	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG	Environmental	Open in IMG/M
3300009868	Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant	Engineered	Open in IMG/M
3300010069	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010100	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010101	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010132	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010862	Boreal forest soil eukaryotic communities from Alaska, USA - C4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010864	Boreal forest soil eukaryotic communities from Alaska, USA - W3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012690	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES078 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012703	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA- GEODES074 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300019213	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNHW2_MetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019264	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020157	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L224-25m	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021069	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L224-25m	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022505	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023708	Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025386	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026429	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepC_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028112	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028530	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8d (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030525	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO037SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030545	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO142-VCO033SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030581	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO142-VCO031SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030596	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO085SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030776	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030803	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C3 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030805	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030833	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030841	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030884	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030917	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB5 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030998	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031082	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031411	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032121	Soil microbial communities from Bohemian Forest, Czech Republic ? CSA3 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032739	Forest Soil Metatranscriptomics Site 2 LB Combined Assembly	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12547J11936_10903761	3300000736	Freshwater And Sediment	IVLIPMGATGFDVGCEPPGACRGAVNLVKLCCKHLVANDNNYALAA*
JGI12672J13324_1027752	3300001150	Forest Soil	MLVAVNLKGATGFDVGYEPSGACRGAVPSLILLQIIVANDDNYALAA*
JGI12630J15595_100321942	3300001545	Forest Soil	MLLEVNLKGATGFDVGYEPSGACRGAVPSLILLQIIVANDDNYALAA*
JGI12659J15293_101322222	3300001546	Forest Soil	MLGELKGATGFDVGYEPQGRTEVQTLVKLLQNIVANDDNYALAA*
JGI12635J15846_101696264	3300001593	Forest Soil	VNLKGATGFDAGXEPSGAYRGAVPSLILLQIIVANDDNYALAA*
JGIcombinedJ26739_1008762381	3300002245	Forest Soil	MLLEVNLKGATGFDVGYEPSGACRGAVPSLILLQI
Ga0005496J37278_1008221	3300002661	Forest Soil	GATGFDVGCEPSRAFRGAVPSLISLQTIVANQDNFAVQLAA*
Ga0058899_101101281	3300004631	Forest Soil	GATGFDVGCEPSGAYRGRSTLVKLLQLIVANDDNYALAA*
Ga0058899_101436662	3300004631	Forest Soil	GRGARLRYAAAVNLKGATGFDVGANLQGRTEAAVTLVNTWLQIIVANDDNYALAA*
Ga0058899_102144561	3300004631	Forest Soil	GATGFDVGYEPSGAYRGCSYPRKYLAANLVANDDNYALAA*
Ga0007794_102345152	3300004774	Freshwater	MLFLLLGPTGFDVGYETPGACRGADSSLNHLQILAANDNSYAL
Ga0066678_109648502	3300005181	Soil	VNLKGATGFDVGYEPSGAYRGAVPSLILLQIIVANDDNYALAA*
Ga0070709_103733672	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	PLGATGFDVGCEPSRAYRGAVPSLITLQIIVANDDNYALAA*
Ga0068912_101083841	3300005506	Soil	GGATGFDVGCESSVAYRGAWVLVTLVQTLVANDDNYALAA*
Ga0070684_1002093141	3300005535	Corn Rhizosphere	LGATGFDVGCEPSRAYRGAVPSLITLQIIVANDDNYALAA*
Ga0070763_103663031	3300005610	Soil	VPKGATGFDVGYEPSGACRGAVPSLILLQIIVANDDNYALAA*
Ga0068862_1025153862	3300005844	Switchgrass Rhizosphere	TGFDVGREPRGAYRGAVPSLILLQTYVANEDSYALAA*
Ga0070766_104573191	3300005921	Soil	LKGATGFDVGYEPSGAYRGCSYPRKYLAANLVANDDNYALAA*
Ga0075015_1007583822	3300006102	Watersheds	ALGATGFDVGSEPPSACRGAVTSLIMLQIIVANDDNYALAA*
Ga0075021_106211952	3300006354	Watersheds	KGATGFDVGCEPSGACRGAVPSLILLQIIVANDDNYALAA*
Ga0075471_103637681	3300006641	Aqueous	KGATGFDVGCEPSGACRGAVNLAKLCCKHTVANDDNYALAA*
Ga0081245_10197422	3300006938	Tropical Rainforest Soil	GFDAGSKPPGAYRGAVPSLIMLQIIVANDDNYALAA*
Ga0114958_1000003825	3300009684	Freshwater Lake	MLFLLLGPTGFDVGYETPGACRGADSSLNHLQILAANDNSYALAA*
Ga0130016_100727505	3300009868	Wastewater	MSGYLKGATGFDVGYEPSGAYRGAWPSLITVQNLVANDDNYALAA*
Ga0127467_1457801	3300010069	Grasslands Soil	GFDVGSEPPSACRGAVPSLIMLQIIVANDDNYALAA*
Ga0127440_10935161	3300010100	Grasslands Soil	FDVGCEPSRAYRGAVPSLITLQIIVANDDNFALQLAA*
Ga0127481_10205491	3300010101	Grasslands Soil	GFDAGSEPPSACRGAVPSLIMLQIIVANDDNYALAA*
Ga0127455_10599201	3300010132	Grasslands Soil	GFDVGCEPSGAYRGAVPSLITLQNIVANDDNYALAA*
Ga0131853_112765712	3300010162	Termite Gut	TGFDVGCEPSGAYRGAVPSLITLQLIVANDDNYALAA*
Ga0126378_121987581	3300010361	Tropical Forest Soil	MLRPYLKGATGFDVGHEPSGAYRGAVPSLKMLQLIVANDDNYALAA
Ga0126378_130799601	3300010361	Tropical Forest Soil	KGATGFDVGHEPSGAYRGAVPSLKMLQLIVANDDNYALAA*
Ga0105239_109041201	3300010375	Corn Rhizosphere	LGATGFDAGSEPPSACRGAVPSLIMLQTIVANEDNFALAA*
Ga0126348_11700582	3300010862	Boreal Forest Soil	ATGFDAGCEPSGAYRGAVPSLILLQIIVANDDNYALAA*
Ga0126357_10794451	3300010864	Boreal Forest Soil	GFDVGSKPPGAYRGAVPSLIMLQIIVANDDNYALAA*
Ga0150983_149524611	3300011120	Forest Soil	GFDVGCEPSRACRGAEPSLITLQIIVANDDNYALAA*
Ga0153922_10499841	3300012181	Attine Ant Fungus Gardens	LQVCCVGTLKGATGFDVGYEPSGACRGAVPSLIMLQIIVANDDNYALAA*
Ga0137371_112970851	3300012356	Vadose Zone Soil	LGATGFDVGYEPSGAYRGAVPSLILLQIIVANDDNYALAA*
Ga0157575_1056301	3300012690	Freshwater	FLFLLLGPTGFDVGYETPGACRGADSSLNHLQILAANDNSYALAA*
Ga0157572_11485221	3300012703	Freshwater	FLLLGPTGFDVGYETPGACRGADSSLNHLQILAANDNSYALAA*
Ga0137396_101619461	3300012918	Vadose Zone Soil	MLVEVNLKGATGFDVGCEPSGAYRGAVPSLILLQIIVANDDNYALAA*
Ga0164241_100469583	3300012943	Soil	MMATILLKGATSFDVGCETSGAYRGAWPSLITVQNLVANDDNYALAA*
Ga0157378_117551852	3300013297	Miscanthus Rhizosphere	VSLKGATGFDVGYEPSGACRGAVALVNNCCKNLVANDDNYALAA*
Ga0134079_100690821	3300014166	Grasslands Soil	VNLEGATGFDVGYEPSGAYRGAVPSLILLQIIVANDDNYA
Ga0187767_102206612	3300017999	Tropical Peatland	MLHESLKGATGFDVGHEPSGAYRGAVPSLKMLQLIVANDD
Ga0179950_12211291	3300019213	Anaerobic Digestor Sludge	PDFDVDCKTRGACRGCSSPSLIRLQIIVANDDSYALAA
Ga0184643_10845121	3300019255	Groundwater Sediment	LGATGFDVGSKPPGAYRGAVPSLIMLQIIVANDDNYALAA
Ga0187796_14954261	3300019264	Peatland	IGFDVGCETPGACRGAGSSLNHLQTLAANDNSYALAA
Ga0194049_100022418	3300020157	Anoxic Zone Freshwater	MLFLLLGPTGFDVGYETPGACRGADSSLNHLQILAANDNSYALAA
Ga0210395_104167281	3300020582	Soil	MLLAVNLKGATGFDVGYEPSGAYRGAVPSLIMLQIIVANDDNYALAA
Ga0194062_11281401	3300021069	Anoxic Zone Freshwater	SGMLFLLLGPTGFDVGYETPGACRGADSSLNHLQILAANDNSYALAA
Ga0179585_11108571	3300021307	Vadose Zone Soil	TGFDVGCEPSGAYRGAVPSLITLQNIVANDDNYALAA
Ga0210389_114996461	3300021404	Soil	TGFDVGCKPPGACRGAVPSLIMLQIIVANDDNYALAA
Ga0224712_104917881	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	FRCGFDVGCEPSRAYRGAVPSLITLQIIVANDDNYALAA
Ga0242642_10961441	3300022504	Soil	GFDAGYEPSGAYRGAVPSLILLQIIVANDDNYALAA
Ga0242647_10231171	3300022505	Soil	GFDVGCKPPGACRGAVPSLIMLQIIVANDDNYALAA
Ga0242659_10541151	3300022522	Soil	GFDVGSEPPSACRGAVPSLIMLQIIVANDDNYALAA
Ga0242663_11172231	3300022523	Soil	FDVGYEPSGAYRGAVPSLIMLQLLVANDDNYALAA
Ga0242668_10284881	3300022529	Soil	GFDVGCKPPRAYRGAVPSLIMLQIIVANDDNYALAA
Ga0242655_100487421	3300022532	Soil	GFDVGHEASGAYRGAVPSLKMLQIIVANDDNYALAA
Ga0242653_10457801	3300022712	Soil	GFDVGHEPSGAYRGAVPSLKMLQIIVANDDNYALAA
Ga0242673_10838601	3300022716	Soil	STWVCEPSRAYRGVEPSLITLQIIVANDDNYALAA
Ga0228709_10865531	3300023708	Freshwater	LKGATGFDVGCETSGAYRGAWVLVKLLCKHLVANDDNYALAA
Ga0208585_10588921	3300025386	Arctic Peat Soil	MLMLILKGATGFDVGYEPSGACRGVEPSLITLQNLVANDDNYALAA
Ga0207711_106995141	3300025941	Switchgrass Rhizosphere	YRRYLLGATGFDVGCEPSRAYRGAVPSLITLQIIVANDDNYALAA
Ga0255253_10874711	3300026429	Freshwater	ATGFDVGCEPPGACRGAVNLVKLCCKHLVANDNNYALAA
Ga0257156_10496561	3300026498	Soil	TGFDAGCEPSGAYRGAVPSLILLQIIVANDDNYALAA
Ga0209325_10379571	3300027050	Forest Soil	GTLKGATGFDVGHEPSGAYRGAVPSLKMLQLIVANDDNYALAA
Ga0208488_10646021	3300027110	Forest Soil	TGFDVGYEPSGAYRGCSYPRKYLAANLVANDDNYALAA
Ga0208995_10144303	3300027388	Forest Soil	MLLEVNLKGATGFDVGYEPSGAYRGAVPSLILLQIIVANDDNYALAA
Ga0209527_10131601	3300027583	Forest Soil	MLLEVNLKGATGFDVGYEPSGACRGAVPSLILLQIIVANDDNYALAA
Ga0209331_10693762	3300027603	Forest Soil	MLVAVNLKGATGFDVGYEPSGACRGAVPSLILLQIIVANDDNYALAA
Ga0209009_10966802	3300027667	Forest Soil	MLVEVNLKGATGFDVGYEPSGAYRGAVPSLILLQIIVANDDNYALAA
Ga0209328_101680891	3300027727	Forest Soil	KGATGFDVGYEPSGACRGAVPSLILLQIIVANDDNYALAA
Ga0209380_108029591	3300027889	Soil	LKGATGFDVGYEPSGAYRGCSYPRKYLAANLVANDDNYALAA
Ga0209068_106556951	3300027894	Watersheds	PSGGMLVAVNLKGATGFDVGCEPSGACRGAVPSLILLQIIVANDDNYALAA
Ga0256335_11270671	3300028112	Freshwater	GFDVGCEPSGACRGAVNLAKLCCKHTVANDDNYALAA
Ga0255279_10679081	3300028530	Freshwater	GATGFDVGCEPSGACRGAVNLAKLCCKHTVANDDNYALAA
Ga0222749_108238411	3300029636	Soil	GFDVGCKPPGACRGAVPSLIMLQIIVANQDNYALAA
Ga0222748_10633591	3300029701	Soil	GFDVGCEPSGAYRGCSLPRKYLLQIIVANDDNYALAA
Ga0210273_12467111	3300030525	Soil	LGATGFDVGSEPPSACRGAVPSLIMLQIIVANDDNYALAA
Ga0210271_108031921	3300030545	Soil	TGFDVGSEPPSACRGAVPSLIMLQIIVANDDNYALAA
Ga0210270_12374351	3300030581	Soil	AGFDVGSEPPSACRGAVPSLIMLQIIDANDDIYALAA
Ga0210278_10590011	3300030596	Soil	GATGFDVGSEPPSACRGAVPSLIMLQIIDANDDIYALAA
Ga0210278_11756812	3300030596	Soil	GFDVGYEPSGACRGVEPSLITLQNLVANDDNYALAA
Ga0307482_11081831	3300030730	Hardwood Forest Soil	TGFDVGYEPSGAYRGAVPSLILLQIIVANDDNYALAA
Ga0307482_13141052	3300030730	Hardwood Forest Soil	IDVGCKPPGAYRGAVPSIIMLQIIVANDDNYALAA
Ga0265460_112635191	3300030740	Soil	ATGFDVGSEPPSACRGAVPSLIMLQIIVANDDNYALAA
Ga0075396_10023151	3300030776	Soil	PLGATGFDVGCEPSRAFRGAVPSLISLQTIVANQDNFAVQLAA
Ga0074037_10141091	3300030803	Soil	AGFDVGYEPSGACRGAVPSLILLQIIVANDDNYALAA
Ga0265756_1087711	3300030805	Soil	TGFDVGSEPPSACRGAVPSLIMLQIIDANDDIYALAA
Ga0265736_1010281	3300030833	Soil	PDSTWVCEPSRAYRGVEPSLITLQIIVANDDNYALAA
Ga0075384_100589211	3300030841	Soil	ATGFDVGCEPSGAYRGCSLPRKYLLQIIVANDDNYALAA
Ga0265758_1068331	3300030884	Soil	GFDVGCEPPSACRGAVPSLIMLQIIDANDDIYALAA
Ga0075382_100116731	3300030917	Soil	FDVGCEPSGAYRGAVPSLISLQTIVANQDNFAVQLAA
Ga0138296_18541051	3300030923	Soil	HAFYPLGATGFDVGCEPSRAFRGAVPSLISLQTIVANQDNFAVQLAA
Ga0075373_116601971	3300030945	Soil	GATGFDVGCEPSRAFRGAVPSLISLQTIVANQDNFAVQLAA
Ga0073996_123819062	3300030998	Soil	GDVDVDLLKGATGFDVGYEPSGACRGVEPSLITLQNLVANDDNYALAA
Ga0138301_15421282	3300031022	Soil	DLGYARDVLGATGFDVGSEPPSACRGAVPSLIMLQLIVANDDNYALAA
Ga0308192_10495711	3300031082	Soil	GFDVGSEPPRACRGALTSLIMMQIIVANDDNYALAA
Ga0170823_135016251	3300031128	Forest Soil	GATGFDVGCEPSGAYRGCSLPRKYLLQIIVANDDNYALAA
Ga0170824_1187899411	3300031231	Forest Soil	ATGFDVGCEPSRAYRGAVPSLITLQIIVANDDNYALAA
Ga0102761_126889221	3300031411	Soil	FDVGCEPSRAYRGAVPSLITLQNIVANDDNFALQLAA
Ga0318515_104775171	3300031572	Soil	MGATGFDVGCEPSGAYRGAVPSLITLQIIVANDDN
Ga0318555_104885501	3300031640	Soil	GATGFDVGCEPSGAYRGAVPSLITLQIIVANDDNYALAA
Ga0318492_105086871	3300031748	Soil	GFDVGCEPSGAYRGAVPSLITLQIIVANDDNYALAA
Ga0307479_103022561	3300031962	Hardwood Forest Soil	MLAGSKLKGATGFDVGYEPSGAYRGAVPSLILLQIIVANDDNYALAA
Ga0318524_105399971	3300032067	Soil	ATGFDVGCEPSGAYRGAVPSLITLQIIVANDDNYALAA
Ga0316040_1147971	3300032121	Soil	GFDVGSEPPSACRGAVPSLIMLQIIDANDDIYALAA
Ga0316040_1154071	3300032121	Soil	ATGFDVGYEPSGAHRGAVPSLKMLQIIVANDDNYALAA
Ga0315741_111072362	3300032739	Forest Soil	TGFDVGSEPPSACRGAVTSLIMLQIIVANDDNYALAA
Ga0335081_117919691	3300032892	Soil	MLVGTLKGATGFDVGHEPSGAYRGAVPSLKMLQLIVANDDNY
Ga0335069_125808651	3300032893	Soil	LKGATGFDVGYEPSGAYRGAVPSLKMLQLIVANDDNYALAA
Ga0335073_101325567	3300033134	Soil	LEYAARANLKGATGFDVGYEPSGAYRGAVPSLKMLQLIVANDDNYALAA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082780

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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