Metagenome / Metatranscriptome Family F082659

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082659
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	91 residues
Representative Sequence	LFEPLIPLPLFRNVPARPELNLYAEIVFDAVRLVRGEGLVVKTKAADVAAARHWITVGNVGVVTFDACCGWLGWDAECTRRAIFSTVRAA
Number of Associated Samples	76
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	14.29 %
% of genes near scaffold ends (potentially truncated)	39.82 %
% of genes from short scaffolds (< 2000 bps)	89.38 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (66.372 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil (15.044 % of family members)
Environment Ontology (ENVO)	Unclassified (46.018 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (65.487 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.68% β-sheet: 1.69% Coil/Unstructured: 57.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00027	cNMP_binding	5.36
PF01569	PAP2	4.46
PF01042	Ribonuc_L-PSP	3.57
PF01717	Meth_synt_2	2.68
PF00118	Cpn60_TCP1	1.79
PF04116	FA_hydroxylase	1.79
PF00873	ACR_tran	1.79
PF09865	DUF2092	0.89
PF00230	MIP	0.89
PF00216	Bac_DNA_binding	0.89
PF01022	HTH_5	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	3.57
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	2.68
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	1.79
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	1.79
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.89
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
All Organisms	root	All Organisms	33.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
cellular organisms	root	All Organisms → cellular organisms	33.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	32.74 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.96 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	7.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	5.31 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5.31 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.88 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	4.42 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.88 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.88 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Andropogonodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Andropogoneae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Tripsacinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Zea	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.37 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Zea mays	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_12478109	Not Available	1038	Open in IMG/M
3300000955\|JGI1027J12803_107672603	Not Available	847	Open in IMG/M
3300004114\|Ga0062593_100103371	All Organisms → cellular organisms → Bacteria	2018	Open in IMG/M
3300004114\|Ga0062593_100183032	All Organisms → cellular organisms → Bacteria	1643	Open in IMG/M
3300004114\|Ga0062593_100403637	Not Available	1223	Open in IMG/M
3300004114\|Ga0062593_101070599	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300004156\|Ga0062589_100021293	All Organisms → cellular organisms → Bacteria	3073	Open in IMG/M
3300004156\|Ga0062589_100055194	Not Available	2255	Open in IMG/M
3300004156\|Ga0062589_100811292	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300004156\|Ga0062589_101057224	Not Available	764	Open in IMG/M
3300004157\|Ga0062590_100087908	All Organisms → cellular organisms → Bacteria	1914	Open in IMG/M
3300004157\|Ga0062590_100570315	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300004479\|Ga0062595_100582545	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	866	Open in IMG/M
3300004480\|Ga0062592_100596092	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300004643\|Ga0062591_101143880	Not Available	753	Open in IMG/M
3300004643\|Ga0062591_101173182	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300005093\|Ga0062594_100269057	Not Available	1265	Open in IMG/M
3300005093\|Ga0062594_101187075	Not Available	755	Open in IMG/M
3300005093\|Ga0062594_103381453	Not Available	502	Open in IMG/M
3300005355\|Ga0070671_101376163	Not Available	623	Open in IMG/M
3300005356\|Ga0070674_101660626	Not Available	577	Open in IMG/M
3300005366\|Ga0070659_101053561	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	715	Open in IMG/M
3300005367\|Ga0070667_100133106	All Organisms → cellular organisms → Bacteria	2172	Open in IMG/M
3300005438\|Ga0070701_10638304	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	710	Open in IMG/M
3300005459\|Ga0068867_102173454	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	526	Open in IMG/M
3300005546\|Ga0070696_100354308	Not Available	1137	Open in IMG/M
3300005548\|Ga0070665_100575516	Not Available	1139	Open in IMG/M
3300005618\|Ga0068864_101234003	Not Available	747	Open in IMG/M
3300005841\|Ga0068863_101755509	Not Available	630	Open in IMG/M
3300006574\|Ga0074056_11204576	Not Available	1059	Open in IMG/M
3300006574\|Ga0074056_11204576	Not Available	1059	Open in IMG/M
3300006579\|Ga0074054_11400458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	605	Open in IMG/M
3300006844\|Ga0075428_102352676	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	548	Open in IMG/M
3300006854\|Ga0075425_101058080	Not Available	925	Open in IMG/M
3300006854\|Ga0075425_101112188	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	899	Open in IMG/M
3300006854\|Ga0075425_101219145	Not Available	855	Open in IMG/M
3300006871\|Ga0075434_102500348	Not Available	518	Open in IMG/M
3300006904\|Ga0075424_101379966	Not Available	749	Open in IMG/M
3300006904\|Ga0075424_101584266	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300007076\|Ga0075435_101491963	Not Available	593	Open in IMG/M
3300009100\|Ga0075418_12365451	Not Available	580	Open in IMG/M
3300009147\|Ga0114129_10877907	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1138	Open in IMG/M
3300009162\|Ga0075423_11190619	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	813	Open in IMG/M
3300009174\|Ga0105241_10642348	Not Available	963	Open in IMG/M
3300009177\|Ga0105248_10395745	Not Available	1555	Open in IMG/M
3300009177\|Ga0105248_10798038	Not Available	1065	Open in IMG/M
3300009177\|Ga0105248_13049145	Not Available	533	Open in IMG/M
3300009545\|Ga0105237_11568497	Not Available	665	Open in IMG/M
3300009553\|Ga0105249_10236426	All Organisms → cellular organisms → Bacteria	1804	Open in IMG/M
3300009553\|Ga0105249_10957364	Not Available	924	Open in IMG/M
3300009553\|Ga0105249_13088622	Not Available	535	Open in IMG/M
3300010371\|Ga0134125_10761306	Not Available	1066	Open in IMG/M
3300010371\|Ga0134125_11346471	Not Available	779	Open in IMG/M
3300010371\|Ga0134125_12561721	Not Available	554	Open in IMG/M
3300010373\|Ga0134128_11709185	Not Available	692	Open in IMG/M
3300010375\|Ga0105239_12444990	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	609	Open in IMG/M
3300010397\|Ga0134124_10146582	Not Available	2101	Open in IMG/M
3300010399\|Ga0134127_10390502	Not Available	1373	Open in IMG/M
3300010401\|Ga0134121_13040758	Not Available	516	Open in IMG/M
3300011107\|Ga0151490_1315297	Not Available	970	Open in IMG/M
3300011119\|Ga0105246_11630941	Not Available	610	Open in IMG/M
3300012901\|Ga0157288_10433928	Not Available	500	Open in IMG/M
3300013297\|Ga0157378_10270691	Not Available	1633	Open in IMG/M
3300013306\|Ga0163162_11376120	Not Available	803	Open in IMG/M
3300014968\|Ga0157379_10631726	Not Available	1001	Open in IMG/M
3300014969\|Ga0157376_10278893	Not Available	1573	Open in IMG/M
3300015077\|Ga0173483_10909934	Not Available	519	Open in IMG/M
3300015371\|Ga0132258_10041748	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	10423	Open in IMG/M
3300015371\|Ga0132258_10278990	All Organisms → cellular organisms → Bacteria → Proteobacteria	4100	Open in IMG/M
3300015371\|Ga0132258_10446435	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	3223	Open in IMG/M
3300015371\|Ga0132258_10949184	All Organisms → cellular organisms → Bacteria → Proteobacteria	2172	Open in IMG/M
3300015371\|Ga0132258_11516021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1693	Open in IMG/M
3300015371\|Ga0132258_11783138	Not Available	1551	Open in IMG/M
3300015371\|Ga0132258_11990091	Not Available	1462	Open in IMG/M
3300015372\|Ga0132256_100191408	All Organisms → cellular organisms → Bacteria	2086	Open in IMG/M
3300015372\|Ga0132256_100228722	Not Available	1919	Open in IMG/M
3300015372\|Ga0132256_100897624	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300015372\|Ga0132256_101014456	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300015372\|Ga0132256_101356192	Not Available	823	Open in IMG/M
3300015373\|Ga0132257_100571997	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300015373\|Ga0132257_100830955	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1155	Open in IMG/M
3300015373\|Ga0132257_103321005	Not Available	586	Open in IMG/M
3300015374\|Ga0132255_100151226	Not Available	3236	Open in IMG/M
3300015374\|Ga0132255_100777842	Not Available	1426	Open in IMG/M
3300025899\|Ga0207642_10474745	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	762	Open in IMG/M
3300025903\|Ga0207680_10576949	Not Available	804	Open in IMG/M
3300025911\|Ga0207654_10659358	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	750	Open in IMG/M
3300025914\|Ga0207671_10983653	Not Available	665	Open in IMG/M
3300025935\|Ga0207709_11342159	Not Available	591	Open in IMG/M
3300025938\|Ga0207704_11763670	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	532	Open in IMG/M
3300025940\|Ga0207691_11158741	Not Available	642	Open in IMG/M
3300025941\|Ga0207711_10634892	Not Available	996	Open in IMG/M
3300025941\|Ga0207711_11879374	Not Available	542	Open in IMG/M
3300025961\|Ga0207712_10183267	Not Available	1646	Open in IMG/M
3300025972\|Ga0207668_11219574	Not Available	676	Open in IMG/M
3300025986\|Ga0207658_10498681	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1084	Open in IMG/M
3300026035\|Ga0207703_10540557	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300026088\|Ga0207641_11867017	Not Available	602	Open in IMG/M
3300026095\|Ga0207676_10187727	All Organisms → cellular organisms → Bacteria	1816	Open in IMG/M
3300026095\|Ga0207676_11335069	Not Available	712	Open in IMG/M
3300026118\|Ga0207675_102232732	Not Available	562	Open in IMG/M
3300028379\|Ga0268266_10480836	Not Available	1184	Open in IMG/M
3300028380\|Ga0268265_10854033	Not Available	891	Open in IMG/M
3300028380\|Ga0268265_11633757	Not Available	650	Open in IMG/M
3300028381\|Ga0268264_11397086	Not Available	711	Open in IMG/M
3300031547\|Ga0310887_10708202	Not Available	626	Open in IMG/M
3300031908\|Ga0310900_10606938	Not Available	866	Open in IMG/M
3300032180\|Ga0307471_100783493	Not Available	1120	Open in IMG/M
3300032180\|Ga0307471_102939045	Not Available	605	Open in IMG/M
3300032205\|Ga0307472_102694600	Not Available	508	Open in IMG/M
3300032828\|Ga0335080_11190502	Not Available	766	Open in IMG/M
3300032892\|Ga0335081_12101941	Not Available	598	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	63.72%
Environmental	Environmental	36.28%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	63.72%
Terrestrial	Environmental → Terrestrial	36.28%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	40.71%
Soil	Environmental → Terrestrial → Soil	36.28%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.01%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	27.43%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	10.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.77%
Loam	Environmental → Terrestrial → Soil → Loam	1.77%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	27.43%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	15.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	10.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	15.04%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	10.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	8.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	7.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.19%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.19%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.42%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_124781091	3300000891	Soil	MPLFRSVPTYPELSLYAEVVFDAVRLVRGKGVVAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWDAEYTRRAIFSTALAA*
JGI1027J12803_1076726031	3300000955	Soil	LFNYSTDPLPLFRNVPSHPELNLYAEIVFDAARLVRGEGLVVKTKASDVAAAQHWIRAGDIGLVTFDACCGWLGLDAEVTRQAIF
Ga0062593_1001033711	3300004114	Soil	LFNNSTDPLPLFRNVPSHPELNLYAEIVFDAARLVRGEGLVVKTKASDVAAAQHWIRAGDIGLVTFDACCGWLGLDAEVTRQAIFSAARAA*
Ga0062593_1001830323	3300004114	Soil	VPLPLWSNVPTNPELSLYAEIVFDAVRLIRGKSVVTSNENEAAVRAARYWIEAGNVGMVTFDACCVWLGMDPKRARKAIFFTSLAA*
Ga0062593_1004036371	3300004114	Soil	TCDCRHELFEPLSPPPPFRNVSARPELNLYAEIVFDAVRLVRLEGIVVKTKPADVMAARHWIEAGNVGVVTFDACCVWLGMDPERTRRAIFSTLLAA*
Ga0062593_1010705992	3300004114	Soil	IPLPLFREVPNYPELNLYAEVVFDAVRLVRGEGLVVKTKAADIAAARHWIEAGDVGVVTFDACCAWLGWEAEHTRRAIFSTVLAA*
Ga0062589_1000212932	3300004156	Soil	LIPLPLVRKVPNYPELNLYAEIMFDAVRLVRGEGLVVKTRAAEVAAARYWVEAGDIGLVTFDACCGWLGWDAEHTRRAILSARVRAA*
Ga0062589_1000551943	3300004156	Soil	VPLVVVKRTAATRRAWEFLGPRATPIAYVPLTCDRRHELFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLDMDPERTRRAIFSTLLAA*
Ga0062589_1008112921	3300004156	Soil	PYRFGAMPTNPELSLYAEIVFDAVRLIRGKSVVTSNENEAAVRAARYWIEAGNVGMVTFDACCVWLGMDPKRARKAIFFTSLAA*
Ga0062589_1010572242	3300004156	Soil	PTYPELSLYAEVVFDAVRLVRGKGLVAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWDAEYTRRAIFSTALAA*
Ga0062590_1000879083	3300004157	Soil	VPLPLWSNVPTNPELSLYAEIVFDAVRLIRGKSVVTSNENEAAVRAARYWIEAGTVGMVTFDACCVWLGMDPKRARKAIFFTSLAA*
Ga0062590_1005703152	3300004157	Soil	LPLFREVPNYPELNLYAEVVFDAVRLVRGEGLVVKTKAADIAAARHWIEAGDVGVVTFDACCAWLGWEAEHTRRAIFSTVLAA*
Ga0062595_1005825451	3300004479	Soil	MPLFRSVPTYPELSLYAEVVFDAVRLVRGKGLVAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWDAEYTRRAIFSTALAA*
Ga0062592_1005960921	3300004480	Soil	WYELFEPLIPLPLFRNVPARPELNLYAEVVFDAVRLVRGEGLVVKTKAADVAAARAWILDGNVGVLTFDEACGWLGWDADQTRKAIFSTLRAAA*
Ga0062591_1011438801	3300004643	Soil	LFEPLSPPPPFRNVSARPELNLYAEIVFDAVRLVRLEGIVVKTKPADVMAARHWIEAGNVGVVTFDACCVWLGMDPERTRRAIFSTLLAA*
Ga0062591_1011731822	3300004643	Soil	LIPLPLFREVPNYPELNLYAEVVFDAVRLVRGEGLVVKTKAADIAAARHWIEAGDVGVVTFDACCAWLGWEAEHTRRAIFSTVLAA*
Ga0062594_1002690572	3300005093	Soil	SRATPLAYAPCTCDCRHELFEPLSPPPPFRNVSARPELNLYAEIVFDAVRLVRLEGIVVKTKPADVMAARHWIEAGNVGVVTFDACCVWLGMDPERARRAIFSTLLAA*
Ga0062594_1011870751	3300005093	Soil	YPELNLYAEIMFDAVRLVRGEGLVVKTRAAEVAAARYWVEAGDIGLVTFDACCGWLGWDAERTRRAILSARVRAA*
Ga0062594_1033814531	3300005093	Soil	MIDSSIEPFLPMPLFRSVPTYPELSLYAEVVFDAVRLVRGKGLVAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWDAEYTRRAIFSTALAA*
Ga0070671_1013761631	3300005355	Switchgrass Rhizosphere	TRILGSRATPLAYAPCTCDCRHELFEPLSPPPPFRNVSARPELNLYAEIVFDAVRLVRLEGIVVKTKPADVMAARHWIEAGNVGVVTFDACCVWLGMDPERARRAIFSTLLAA*
Ga0070674_1016606261	3300005356	Miscanthus Rhizosphere	LFEPLSPPPPFRNVSARPELNLYAEIVFDAVRLVRLEGIVVKTKPADVMAARHWIEAGNVGVVTFDACCVWLGMDPERARRAIFSTLLAA*
Ga0070659_1010535612	3300005366	Corn Rhizosphere	FREVPNYPELNLYAEVVFDAVRLVRGEGLVVKTKAADIAAARHWIEAGDVGVVTFDACCAWLGWDAEYTRRAIFSTALAA*
Ga0070667_1001331063	3300005367	Switchgrass Rhizosphere	RKLFNYSTDPLPLFRNVPSHPELNLYAEIVFDAARLVRGEGLVVKTKASDVAAAQHWIRAGDIGLVTFDACCGWLGLDAEVTRRAIFSAARAA*
Ga0070701_106383041	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	SIEPFLPMPLFRSVPTYPELSLYAEVVFDAVRLVRGKGLVAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWDAEYTRRAIFSTALAA*
Ga0068867_1021734541	3300005459	Miscanthus Rhizosphere	YAEVVFDAVRLVRGKGLVAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWDAEYTRRAIFSTALAA*
Ga0070696_1003543081	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	ARPELNLYAEIVFDAVRLVRLEGIVVKTKPADVMAARHWIEAGNVGVVTFDACCVWLGMDPERARRAIFSTLLAA*
Ga0070665_1005755162	3300005548	Switchgrass Rhizosphere	LFNPSIEPLIPLPLVRKVPNYPELNLYAEIMFDAVRLVRGEGLVVKTRAAEVAAARYWVEAGDIGLVTFDACCGWLGWDAEHTRRVILSARVRAA*
Ga0068864_1012340031	3300005618	Switchgrass Rhizosphere	LPLVRKVPNYPELNLYAEIMFDAVRLVRGEGLVVKTRAAEVAAARYWVEAGDIGLVTFDACCGWLGWDAEHTRRVILSARVRAA*
Ga0068863_1017555091	3300005841	Switchgrass Rhizosphere	LFNYSTDPLPLFRNVPSHPELNLYAEIVFDAARLVRGEGLVVKTKASDVAAAQHWIRAGDIGLVTFDACCGWLGLDAEVTRRAIFSAARAA*
Ga0074056_112045761	3300006574	Soil	LFNPSIDPLIPLPLVRKVPNYPELNLYAEVVFDAVRLVRGEGLVVKTKAADVAAARHWIEAGDIGVVTFDACCAWLEWDAEHTRRAIFSAARAA*
Ga0074056_112045762	3300006574	Soil	LFEPLIEPLVPLPLWRNVPTNPELSLYAEVVFDAVRLVRGESVVMSNQADVRAARYWIRAGDIGAVTFNACCAWLGWDAEHTREAIFSYRARCLTTASARGGAVYRRGL*
Ga0074054_114004581	3300006579	Soil	LFDPLIEPLVPLPLWRNVLTNPELTLYAQVVFDAVRLVRGESVVMSNQADVRAARYWIRAGDIGAVTFNACCAWLGWD
Ga0075428_1023526762	3300006844	Populus Rhizosphere	MIDSSIEPFLPMPLFRSVPTYPELSLYAEVVFDAVRLVRGKGVVAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWDAEYTRRAIFSTALAA*
Ga0075425_1010580802	3300006854	Populus Rhizosphere	LFDPLIEPLVPLPLWSNVPTNPELSLYAEIVFDAVRLIRGKSVVTSNENEAAVRAARYWIEAGNVGMVTFDACCVWLGMDPERTRRAIFSTLLAA*
Ga0075425_1011121882	3300006854	Populus Rhizosphere	MKMIDSSIEPFLPMPLFRSVPTYPELSLYAEVVFDAVRLVRGKGLVAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWDAEYTRRAIFSTALAA*
Ga0075425_1012191452	3300006854	Populus Rhizosphere	LFNPLIEPLIALPLFRKVPNYPELNLYAEVMFDAVRLVRGGGLVVKTKAADIAAARYWIEAGDIGLITFDACCGWLGWDAEHTRKAIFSTALAA*
Ga0075434_1025003481	3300006871	Populus Rhizosphere	LFNPSIEPLIPLPLVRKVPNYPELNLYAEIMFDAVRLVRGEGLVVKTRAAEVAAARYWVEAGDIGLVTFDACCGWLGWDAEHTRRAILSARVRAA*
Ga0075424_1013799662	3300006904	Populus Rhizosphere	ARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLDMDPERTRRAIFSTLLAA*
Ga0075424_1015842661	3300006904	Populus Rhizosphere	KLFDPSIEPLIPLSRSRKVPNYPELNLYAEIVFDAVRLVRGEGLVVKTKAADVAAARHWIMDGDVGVVTFDTCCTWLGWDTEHTRRAIFSGVRAA*
Ga0075435_1014919632	3300007076	Populus Rhizosphere	DRRHELFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLDMDPERTRRAIFSTLLAA*
Ga0075418_123654512	3300009100	Populus Rhizosphere	PMPLFRSVPTYPELSLYAEVVFDAVRLVRGKGVVAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWEAEHTRKAIFSTVLAA*
Ga0114129_108779071	3300009147	Populus Rhizosphere	LFNPLIEPLIALPLFRKVPNYPELNLYAEVVFDAVRLVRGEGLVVKTKAADIAAARHWIEAGDVGVVTFDACCAWLGWEAEHTRKAIFSTVLAA*
Ga0105243_113435851	3300009148	Miscanthus Rhizosphere	PTNPELSLYAEVLFDAARLVRRESVVRSNRADVSAARHWVEAGDIGVVTFDTCCAWLGWDAAYTREAIFSFVRRA*
Ga0075423_111906191	3300009162	Populus Rhizosphere	MKMIDCSIEPFLPMPLFRSVPTYPELSLYAEVVFDAVRLVRGKGLVAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWDAEYTRRAIFSTALAA*
Ga0105241_106423481	3300009174	Corn Rhizosphere	LFNLSTDPLPLFRNVQSHPELNLYAEIIFDAARLVRNEGLVVKTKAFDVAAAQHWIRAGDIGLVTFDACCGWLGWDAERTRRAILSARVRAA*
Ga0105248_103957451	3300009177	Switchgrass Rhizosphere	LFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLEGIVVATKPAEVIAARHWIEAGNLGVVTFDACCVWLGMDPDRTRRAIFSTVLAA*
Ga0105248_107980382	3300009177	Switchgrass Rhizosphere	VPNYPELNLYAEIMFDAVRLVRGEGLVVKTRAAEVAAARYWVEAGDIGLVTFDACCGWLGWDAEHTRRVILSARVRAA*
Ga0105248_130491451	3300009177	Switchgrass Rhizosphere	LPLFREVPNYPELNLYAEVVFDAVRLVRGEGLVVKTKAADIAAARHWIEAGDVGVVTFDACCAWLGWDAEYTRRAIFSTALAA*
Ga0105237_115684971	3300009545	Corn Rhizosphere	LFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLGMDPERTRRAIFSTLLVA*
Ga0105249_102364262	3300009553	Switchgrass Rhizosphere	LFNLSTDPLPLFRNVQSHPELNLYAEVIFDAARLVRNEGLVVKTKAFDVAAAQHWIRAGDIGLVTFDACCGWLGLDAEVTRRAIFSAARAA*
Ga0105249_109573641	3300009553	Switchgrass Rhizosphere	LFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLGMDPDRTRRAIFSTVLAA*
Ga0105249_130886222	3300009553	Switchgrass Rhizosphere	LIPLPLVRKVPNYPELNLYAEIMFDAVRLVRGEGLVVKTRAAEVAAARYWVEAGDIGLVTFDACCGWLGWDAEHTRRVILSARVRAA*
Ga0134125_107613061	3300010371	Terrestrial Soil	PLTCDRRHELFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLGMDPERTRRAIFSTLLAA*
Ga0134125_113464711	3300010371	Terrestrial Soil	LFEPLIPLPLFRNVPARPELNLYAEVVFDAVRLVRGEGLVVKTKAADVAAARAWILDGNVGVLTFDEACGWLGWDAEQTRKAIFSTLRAAA*
Ga0134125_125617211	3300010371	Terrestrial Soil	LFNPSIEPLIPLPLFRKVPNYPELNLYAEIMFDAVRLVRGEGLVVKTRAAEVAAARYWVEAGDIGLVTFDACCGWLGWDAERTRRAILSARVRAA*
Ga0134128_117091851	3300010373	Terrestrial Soil	LFNLSTDPLPLFRNVQSHPELNLYAEIIFDAARLVRNEGLVVKTKAFDVAAAQHWIRAGDIGLVTFDACCGWLGLDAEVTRRAIFSAARAA*
Ga0105239_124449901	3300010375	Corn Rhizosphere	MKMIDSSIEPFLPMPLFRSVPTYPELSLYAEVVFDAVRLVRGEGLVVKTKAADIAAARHWIEAGDVGVVTFDACCAWLGWDAEYTRRAIFSTALAA*
Ga0134124_101465823	3300010397	Terrestrial Soil	LFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLEGIVVATKPAEVIAARHWIEAGNLGVVTFDACCVWLGMDPERTRRAIFSTLLAA*
Ga0134127_103905021	3300010399	Terrestrial Soil	LFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLGMDPERTRRAIFSTLLAA*
Ga0134121_130407581	3300010401	Terrestrial Soil	LFEPSPPLPLFRNVPARPELNLYAEIVLDAVRLVRLEGIVVATKPAEVIAARHWIEAGNLGVVTFDACCVWLGMDPDRTRRAIFSTVLAA*
Ga0151490_13152971	3300011107	Soil	LFNPSIDPLIPLPLVRKVPNYPELNLYAEVVFDAVRLVRGEGLVVKTKAADVAAARHWIEAGDIGVVTFDACCAWLGWDAEHTRRAIFSTALTA*
Ga0105246_116309411	3300011119	Miscanthus Rhizosphere	ELNLYAEIVFDAARLVRGEGLVVKTKASDVAAAQHWIRAGDIGLVTFDACCGWLGWDAEHTRRVILSARVRAA*
Ga0157288_104339281	3300012901	Soil	LFEPLSPPPPFRNVSARPELNLYAEIVFDAVRLVRLEGIVVKTKPADVMAARHWIEAGNVGVVTFDACCVWLGMDPKRARKAIFFTSLAA*
Ga0157378_102706911	3300013297	Miscanthus Rhizosphere	MNCSSRSPPPFRNVSARPELNLYAEIVFDAVRLVRLEGIVVKTKLADVMAARHWIEAGNVGVVTFDACCVWLGMDPERARRAIFSTLLAA*
Ga0163162_113761202	3300013306	Switchgrass Rhizosphere	CDAGRKLFNPSIEPLIPLPLFRKVPNYPELNLYAEIMFDAVRLVRGEGLVVKTRAAEVAAARYWVEAGDIGLVTFDACCGWLGWDAERTRRAILSARVRAA*
Ga0157379_106317262	3300014968	Switchgrass Rhizosphere	LIEPLIALPLFRKVPNYPELNLYAEIMFDAVRLVRGEGLVVKTRAAEVAAARYWVEAGDIGLVTFDACCGWLGWDAEHTRRVILSARVRAA*
Ga0157376_102788931	3300014969	Miscanthus Rhizosphere	SLRRSSSRLRFEVYGQTPIAHVHSLCDHRHELFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLGMDPERTRRAIFSTLLAA*
Ga0173483_109099341	3300015077	Soil	LIEPLVPLPLWSNVPTNPELSLYAEIVFDAVRLIRGKSVVTSNENEAAVRAARYWIEAGNVGMVTFDACCVWLGMDPKRARKAIFFTSLAA*
Ga0132258_1004174811	3300015371	Arabidopsis Rhizosphere	LFNNSTDPLPLFRNVPSHPEVNLYAEIVFDAARLVRGEGLVVKTKASDVAAAQHWIRAGDIGLVTFDACCGWLGLDAEVTRQAIFSAARAA*
Ga0132258_102789905	3300015371	Arabidopsis Rhizosphere	MKMIDSSIEPFLPMPLFRSVPTYPELSLYAEVVFDAVRLVRGKGVVAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWDAEYTRRAIFSTALAA*
Ga0132258_104464352	3300015371	Arabidopsis Rhizosphere	MFDPLIEPLVPLSLLRNVPTNPELSLYAEIVFDAVRLVRGKSVVTSNQPDVRAARYWIGAGDVGVVTFDACCAWLGWDAEHTRRAIFSTALAA*
Ga0132258_109491841	3300015371	Arabidopsis Rhizosphere	LFDPSIEPWIPLPRFRNVPACPELNLYAEIVFDAVRLVRCEGIVAKTKAADVAARHWIEAGDVGVVTFDACCGWLGWDAEHTRKAIFSTALAA*
Ga0132258_115160213	3300015371	Arabidopsis Rhizosphere	LFDPSIEPLIPLPRSRKVPNYPELNLYAEIVFDAVRLVRGEGLVVKTKAADVAAARHWIMAGDVGVVTFETCCTWLGWDTEHTRRAIFSSARAA*
Ga0132258_117831382	3300015371	Arabidopsis Rhizosphere	LFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLDMDPERTRRAIFSTLLAA*
Ga0132258_119900912	3300015371	Arabidopsis Rhizosphere	MLVEPLMPLPLFRNVPARPELSLYAEIVFDAVRLVRGESVVATKLAEVEAARHWIEAGDVGVVTFDACCAWLGWDAEHTRRAIFSSALAA*
Ga0132256_1001914082	3300015372	Arabidopsis Rhizosphere	LFNPSIEPLIPLPLVRKVPNYPELNLYAEIMFDAVRLVRGEGLVVKTRAAEVAAARYWMEAGDIGLVTFDACCGWLGWDAEHTRRAILSARVRAA*
Ga0132256_1002287225	3300015372	Arabidopsis Rhizosphere	LFERSIEPLVPVSLWRNVPTNPELSLYAEIVFDAVRLVRGKSVVTSNQPDVRAARYWIGAGDVGVVTFDACCAWLGWDAEHTRRAIFSTALGA*
Ga0132256_1008976241	3300015372	Arabidopsis Rhizosphere	MFEPSIEPLVPLPLWSNVPTNPELSLYAEIVFDAVRLIRGKSVVTSNENEAAVRAARYWIEAGNVGMVTFDACCVWLGMDPKRARKAIFFTSLAA*
Ga0132256_1010144561	3300015372	Arabidopsis Rhizosphere	LFNNSTDPLPLFRNVPSHPELNLYAEIVFDAARLVRGEGLVVKTKASDVAAAQHWIRAGDIGLVTFDACCGWLGWDAEHTRRAILSARVR
Ga0132256_1013561921	3300015372	Arabidopsis Rhizosphere	LFDPSIEPLIPLPLFREVPNYPELNLYAEVVFDAVRLVRGEGLVVKTKAADIAAARHWIEAGDVGVVTFDACCAWLGWEAEHTRRAIFSTVLAA*
Ga0132257_1005719971	3300015373	Arabidopsis Rhizosphere	SLYAEIVFDAVRLIRGKSVVTSNENEAAVRAARYWIEAGNVGMVTFDACCVWLGMDPKRARKAIFFTSLAA*
Ga0132257_1008309551	3300015373	Arabidopsis Rhizosphere	LFNLSTDPLPLFRNVPSHPELNLYAEIVFDAARLVRGEGLVVKTKASDVAAAQHWIRAGDIGLVTFDACCGWLGLDAEVTRQAIFSAARAA*
Ga0132257_1033210051	3300015373	Arabidopsis Rhizosphere	MKMIDSSIEPFLPMPLFRSVPTYPELSLYAEVVFDAVRLVRGKGVLAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWDAEYTRRAIFSTALAA*
Ga0132255_1001512261	3300015374	Arabidopsis Rhizosphere	LFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGSLGVVTFDACCVWLDMDPERTRRAIFSTLLAA*
Ga0132255_1007778423	3300015374	Arabidopsis Rhizosphere	FRNVPEHPELNLYAEIVFDAVRLVRGEGVVATKAVDVEAARHWIEAGDIGVVTFDACCSWLGWDAEHTRKAIFSTALAA*
Ga0207642_104747451	3300025899	Miscanthus Rhizosphere	LFNPSIEPLIPLPLFRKVPNYPELNLYAEIMFDAVRLVRGEGLVVKTRAAEVAAARYWVEAGDIGLVTFDACCGWLGLDAEVTRRAIFSAARAA
Ga0207680_105769492	3300025903	Switchgrass Rhizosphere	LFNPSIEPLIPLPLVRKVPNYPELNLYAEIMFDAVRLVRGEGLVVKTRAAEVAAARYWVEAGDIGLVTFDACCGWLGWDAEHTRRVILSARVRAA
Ga0207654_106593581	3300025911	Corn Rhizosphere	MIDSSIEPFLPMPLFRSVPTYPELSLYAEVVFDAVRLVRGKGLVAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWDAEYTRRAIFSTALAA
Ga0207671_109836531	3300025914	Corn Rhizosphere	LGPRATPIAYVPLTCDRRHELFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLGMDPERTRRAIFSTLLAA
Ga0207709_113421591	3300025935	Miscanthus Rhizosphere	LFEPLSPPPPFRNVSARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLGMDPERTRRAIFSTLLAA
Ga0207704_117636702	3300025938	Miscanthus Rhizosphere	CDARCKMKMIDCSIEPFLPMPLFRSVPTYPELSLYAEVVFDAVRLVRGKGLVAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWDAEYTRRAIFSTALAA
Ga0207691_111587411	3300025940	Miscanthus Rhizosphere	MKMIDSSIEPFLPMPLFRSVPTYPELSLYAEVVFDAVRLVRGKGLVAMTKASDVRDAFYWIRAGDVGAVTFDACCAWLGWDAEYTRRAIFSTALAA
Ga0207711_106348922	3300025941	Switchgrass Rhizosphere	TPLAYAPCTCDCRHELFEPLSPPPPFRNVSARPELNLYAEIVLDAVRLVRLEGIVVATKPAEVIAARHWIEAGNLGVVTFDACCVWLGMDPDRTRRAIFSTVLAA
Ga0207711_118793741	3300025941	Switchgrass Rhizosphere	VPSHPELNLYAEIVFDAARLVRGEGLVVKTKASDVAAAQHWIRAGDIGLVTFDACCGWLGWDAEHTRRVILSARVRAA
Ga0207712_101832672	3300025961	Switchgrass Rhizosphere	LFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLGMDPERTRRAIFSTLLAA
Ga0207668_112195741	3300025972	Switchgrass Rhizosphere	LFEPLIPLPLFRNVPARPELNLYAEVVFDAVRLVRGEGLVVKTKAADVAAARAWILDGNVGVLTFDEACGWLGWDAEQTRKAIFSTLRAAA
Ga0207658_104986812	3300025986	Switchgrass Rhizosphere	GRKLFNYSTDPLPLFRNVPSHPELNLYAEIVFDAARLVRGEGLVVKTKASDVAAAQHWIRAGDIGLVTFDACCGWLGLDAEVTRRAIFSAARAA
Ga0207703_105405571	3300026035	Switchgrass Rhizosphere	LFNYSTDPLPLFRNVPSHPELNLYAEIVFDAARLVRGEGLVVKTKASDVAAAQHWIRAGDIGLVTFDACCGWLGLDAEVTRRAIFSAARAA
Ga0207641_118670171	3300026088	Switchgrass Rhizosphere	LRPRATPIAYVPLTCDRRHELFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLGMDPERTRRAIFSTLLAA
Ga0207676_101877271	3300026095	Switchgrass Rhizosphere	TDPLPLFRNVPSHPELNLYAEIVFDAARLARGEGLVVKTKASDVAAAQHWIRAGDIGLVTFDACCGWLGLDAEVTRRAIFSAARAA
Ga0207676_113350691	3300026095	Switchgrass Rhizosphere	PLVRKVPNYPELNLYAEIMFDAVRLVRGEGLVVKTRAAEVAAARYWVEAGDIGLVTFDACCGWLGWDAEHTRRVILSARVRAA
Ga0207675_1022327321	3300026118	Switchgrass Rhizosphere	RVPRSCDAGRKLFNLSTDPLPLFRNVQSHPELNLYAEIVFDAARLVRGEGLVVKTKASDVAAAQHWIRAGDIGLVTFDACCGWLGWDAEHTRRAILSARVRAA
Ga0268266_104808362	3300028379	Switchgrass Rhizosphere	LGPRATPIAYVPLTCDRRHELFEPLSPPPPFRNVPARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLGMDPDRTRRAIFSTVLAA
Ga0268265_108540331	3300028380	Switchgrass Rhizosphere	RNVPARPELNLYAEIVLDAVRLVRLERIVVATKPAEVMAARHWIEAGNLGVVTFDACCVWLGMDPERTRRAIFSTLLAA
Ga0268265_116337571	3300028380	Switchgrass Rhizosphere	LFNLSTDPLPLFRNVQSHPELNLYAEIIFDAARLVRNEGLVVKTKAFDVAAAQHWIRAGDIGLVTFDACCAWLGWEAEYTRRAIFSTALAA
Ga0268264_113970861	3300028381	Switchgrass Rhizosphere	LFEPLIPLPLFRNVPARPELNLYAEVVFDAVRLVRGEGLVVKTKAADVAAARAWILDGNVGVLTFDEACGWLGWDAEQTRKAI
Ga0310887_107082021	3300031547	Soil	PRSCDAGRKLFNYSTDPLPLFRNVPSHPELNLYAEIVFDAARLVRGEGLVVKTKASDVAAAQHWIRAGDIGLVTFDACCGWLGLDAEVTRRAIFSAARAA
Ga0310900_106069381	3300031908	Soil	LFEPLSPPPPFRNVSARPELNLYAEIVFDAVRLVRLEGIVVKTKLADVMAARHWIEAGNVGVVTFDACCVWLGMDPERARRAIFSTLLAA
Ga0307471_1007834932	3300032180	Hardwood Forest Soil	MLIEPWMPLPLFRNVPARLELGLYAEIVFDAVRLVRGEGVVATKASDVAAARRWIEAGDVGVVTFDACCAWLGWDAEHTRKAIFSTLLAA
Ga0307471_1029390451	3300032180	Hardwood Forest Soil	PGHKDNTLLPTPRVRAKVGAIMVELLMPLPLFHKVPARPELGLYAEVVFDAVRLVRGEGVVASNQADVRAASYWIRNGNIGVVTFDACCAWLGWDAEHTRRAILSTLRAA
Ga0307472_1026946001	3300032205	Hardwood Forest Soil	SARPELSLYAEVVFDAVRLARGESVVATKLAEVEAARHWIEAGDVGVVTFDACCAWLGWDAEYTRRAIFSTALAA
Ga0335080_111905022	3300032828	Soil	LFEPLIPLPLFRNVPARPELNLYAEIVFDAVRLVRGEGLVVKTKAADVAAARHWITVGNVGVVTFDACCGWLGWDAECT
Ga0335081_121019412	3300032892	Soil	LFEPLIPLPLFRNVPARPELNLYAEIVFDAVRLVRGEGLVVKTKAADVAAARHWITVGNVGVVTFDACCGWLGWDAECTRRAIFSTVRAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082659

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences