Metagenome / Metatranscriptome Family F082417

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082417
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	44 residues
Representative Sequence	QDIGHAHGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAK
Number of Associated Samples	76
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.35 %
% of genes from short scaffolds (< 2000 bps)	51.33 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.646 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland (27.434 % of family members)
Environment Ontology (ENVO)	Unclassified (60.177 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (52.212 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.24% β-sheet: 4.76% Coil/Unstructured: 50.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF03400	DDE_Tnp_IS1	8.85
PF07508	Recombinase	4.42
PF02922	CBM_48	3.54
PF07238	PilZ	3.54
PF00589	Phage_integrase	3.54
PF13374	TPR_10	2.65
PF03358	FMN_red	2.65
PF08238	Sel1	1.77
PF12831	FAD_oxidored	1.77
PF00704	Glyco_hydro_18	1.77
PF00078	RVT_1	1.77
PF02163	Peptidase_M50	1.77
PF03729	DUF308	1.77
PF03992	ABM	1.77
PF13517	FG-GAP_3	1.77
PF00239	Resolvase	1.77
PF13481	AAA_25	0.88
PF13470	PIN_3	0.88
PF00196	GerE	0.88
PF13426	PAS_9	0.88
PF03551	PadR	0.88
PF10546	P63C	0.88
PF14514	TetR_C_9	0.88
PF00899	ThiF	0.88
PF16576	HlyD_D23	0.88
PF13545	HTH_Crp_2	0.88
PF01451	LMWPc	0.88
PF07799	DUF1643	0.88
PF13620	CarboxypepD_reg	0.88
PF01165	Ribosomal_S21	0.88
PF12770	CHAT	0.88
PF12728	HTH_17	0.88
PF00563	EAL	0.88
PF01850	PIN	0.88
PF08299	Bac_DnaA_C	0.88
PF16499	Melibiase_2	0.88
PF00154	RecA	0.88
PF00871	Acetate_kinase	0.88
PF00296	Bac_luciferase	0.88
PF02915	Rubrerythrin	0.88
PF01654	Cyt_bd_oxida_I	0.88
PF00990	GGDEF	0.88
PF02797	Chal_sti_synt_C	0.88
PF02518	HATPase_c	0.88
PF13440	Polysacc_synt_3	0.88
PF02899	Phage_int_SAM_1	0.88
PF08447	PAS_3	0.88
PF01797	Y1_Tnp	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG1662	Transposase and inactivated derivatives, IS1 family	Mobilome: prophages, transposons [X]	8.85
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	6.19
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.77
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	1.77
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	0.88
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	0.88
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.88
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.88
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.88
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.88
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.88
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.88
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.88
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.88
COG3426	Butyrate kinase	Energy production and conversion [C]	0.88
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.88
COG4333	Uncharacterized conserved protein, DUF1643 domain	Function unknown [S]	0.88
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.88
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.88
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.88
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.88
COG0282	Acetate kinase	Energy production and conversion [C]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.65 %
Unclassified	root	N/A	20.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.65 %
Unclassified	root	N/A	20.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.65 %
Unclassified	root	N/A	20.35 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	36.28 %
Unclassified	root	N/A	20.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.77 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	1.77 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.35 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	14.16 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.77 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	1.77 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.35 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	11.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.77 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.77 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.35 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	1.77 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	1.77 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.77 %
Gemmatimonadetes bacterium 13_1_40CM_2_60_3	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
Acidobacteriales bacterium 59-55	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 59-55	1.77 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1.77 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1.77 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.77 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.88 %
Acidisarcina	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina	0.88 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.88 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.88 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.88 %
Gemmatimonadetes bacterium 13_1_40CM_2_60_3	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1.77 %
Acidobacteriales bacterium 59-55	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 59-55	1.77 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1.77 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.77 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.88 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.88 %
Acidisarcina polymorpha	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	0.88 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.88 %
unclassified Terriglobus	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → unclassified Terriglobus	0.88 %
Gemmatimonadetes bacterium 13_1_40CM_2_60_3	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1.77 %
Acidobacteriales bacterium 59-55	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 59-55	1.77 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1.77 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.77 %
Terriglobus sp. TAA 43	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → unclassified Terriglobus → Terriglobus sp. TAA 43	0.88 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.88 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.88 %
Acidisarcina polymorpha	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	0.88 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.88 %
Gemmatimonadetes bacterium 13_1_40CM_2_60_3	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10012869	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6532	Open in IMG/M
3300001356\|JGI12269J14319_10100661	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1420	Open in IMG/M
3300005537\|Ga0070730_10342253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	974	Open in IMG/M
3300005554\|Ga0066661_10222270	Not Available	1170	Open in IMG/M
3300005557\|Ga0066704_10328759	Not Available	1028	Open in IMG/M
3300005561\|Ga0066699_10308429	Not Available	1127	Open in IMG/M
3300005561\|Ga0066699_10311139	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1122	Open in IMG/M
3300006797\|Ga0066659_10241599	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
3300009012\|Ga0066710_100030558	All Organisms → cellular organisms → Bacteria	6257	Open in IMG/M
3300009518\|Ga0116128_1014750	All Organisms → cellular organisms → Bacteria → Acidobacteria	2727	Open in IMG/M
3300009518\|Ga0116128_1079878	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	987	Open in IMG/M
3300009519\|Ga0116108_1006425	All Organisms → cellular organisms → Bacteria	4862	Open in IMG/M
3300009524\|Ga0116225_1003075	All Organisms → cellular organisms → Bacteria → Acidobacteria	10870	Open in IMG/M
3300009524\|Ga0116225_1291063	Not Available	730	Open in IMG/M
3300009547\|Ga0116136_1008428	All Organisms → cellular organisms → Bacteria	3957	Open in IMG/M
3300009547\|Ga0116136_1009904	All Organisms → cellular organisms → Bacteria → Acidobacteria	3546	Open in IMG/M
3300009616\|Ga0116111_1009362	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 59-55	4155	Open in IMG/M
3300009616\|Ga0116111_1012103	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3432	Open in IMG/M
3300009631\|Ga0116115_1023824	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1729	Open in IMG/M
3300009632\|Ga0116102_1005690	All Organisms → cellular organisms → Bacteria	4743	Open in IMG/M
3300009632\|Ga0116102_1065582	Not Available	1102	Open in IMG/M
3300009636\|Ga0116112_1001103	All Organisms → cellular organisms → Bacteria	18780	Open in IMG/M
3300009636\|Ga0116112_1005438	All Organisms → cellular organisms → Bacteria → Acidobacteria	6092	Open in IMG/M
3300009762\|Ga0116130_1005951	All Organisms → cellular organisms → Bacteria	4857	Open in IMG/M
3300010341\|Ga0074045_10502819	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	779	Open in IMG/M
3300010343\|Ga0074044_10352696	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	965	Open in IMG/M
3300010379\|Ga0136449_100032919	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12434	Open in IMG/M
3300010379\|Ga0136449_100140201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4782	Open in IMG/M
3300010379\|Ga0136449_100173646	All Organisms → cellular organisms → Bacteria	4164	Open in IMG/M
3300012205\|Ga0137362_11011101	Not Available	708	Open in IMG/M
3300012205\|Ga0137362_11496072	Not Available	562	Open in IMG/M
3300012210\|Ga0137378_10399996	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1274	Open in IMG/M
3300012350\|Ga0137372_11085101	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300012354\|Ga0137366_10269509	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1259	Open in IMG/M
3300012354\|Ga0137366_10270521	All Organisms → cellular organisms → Bacteria → Acidobacteria	1256	Open in IMG/M
3300012357\|Ga0137384_10460162	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1047	Open in IMG/M
3300012971\|Ga0126369_13433197	Not Available	519	Open in IMG/M
3300014156\|Ga0181518_10036020	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3128	Open in IMG/M
3300014169\|Ga0181531_10132955	Not Available	1499	Open in IMG/M
3300014491\|Ga0182014_10022283	All Organisms → cellular organisms → Bacteria	5282	Open in IMG/M
3300014491\|Ga0182014_10026486	All Organisms → cellular organisms → Bacteria → Proteobacteria	4643	Open in IMG/M
3300014491\|Ga0182014_10087179	Not Available	1930	Open in IMG/M
3300014491\|Ga0182014_10108289	All Organisms → cellular organisms → Bacteria → Acidobacteria	1654	Open in IMG/M
3300014492\|Ga0182013_10144917	All Organisms → cellular organisms → Bacteria → Acidobacteria	1508	Open in IMG/M
3300014638\|Ga0181536_10092831	All Organisms → cellular organisms → Bacteria	1742	Open in IMG/M
3300016702\|Ga0181511_1011576	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300017925\|Ga0187856_1012036	All Organisms → cellular organisms → Bacteria	4882	Open in IMG/M
3300017925\|Ga0187856_1040438	All Organisms → cellular organisms → Bacteria → Acidobacteria	2121	Open in IMG/M
3300017929\|Ga0187849_1105907	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300017935\|Ga0187848_10028316	All Organisms → cellular organisms → Bacteria → Acidobacteria	2856	Open in IMG/M
3300017996\|Ga0187891_1001201	All Organisms → cellular organisms → Bacteria	22895	Open in IMG/M
3300017996\|Ga0187891_1001398	All Organisms → cellular organisms → Bacteria	20699	Open in IMG/M
3300017996\|Ga0187891_1005007	All Organisms → cellular organisms → Bacteria	8361	Open in IMG/M
3300017996\|Ga0187891_1301424	Not Available	523	Open in IMG/M
3300018001\|Ga0187815_10096317	Not Available	1247	Open in IMG/M
3300018002\|Ga0187868_1252632	Not Available	594	Open in IMG/M
3300018003\|Ga0187876_1048180	Not Available	1773	Open in IMG/M
3300018016\|Ga0187880_1255487	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	771	Open in IMG/M
3300018016\|Ga0187880_1414933	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300018019\|Ga0187874_10011133	All Organisms → cellular organisms → Bacteria	5180	Open in IMG/M
3300018019\|Ga0187874_10361370	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300018022\|Ga0187864_10323250	Not Available	682	Open in IMG/M
3300018026\|Ga0187857_10001933	All Organisms → cellular organisms → Bacteria	19632	Open in IMG/M
3300018026\|Ga0187857_10010833	All Organisms → cellular organisms → Bacteria	5657	Open in IMG/M
3300018035\|Ga0187875_10601016	Not Available	580	Open in IMG/M
3300018037\|Ga0187883_10622509	Not Available	561	Open in IMG/M
3300018040\|Ga0187862_10054653	Not Available	2888	Open in IMG/M
3300018057\|Ga0187858_10100827	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1972	Open in IMG/M
3300018057\|Ga0187858_10107251	All Organisms → cellular organisms → Bacteria	1901	Open in IMG/M
3300018057\|Ga0187858_10614525	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300018057\|Ga0187858_10918311	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	514	Open in IMG/M
3300022872\|Ga0224526_1035406	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → unclassified Terriglobus → Terriglobus sp. TAA 43	1047	Open in IMG/M
3300023090\|Ga0224558_1004203	All Organisms → cellular organisms → Bacteria	11354	Open in IMG/M
3300023090\|Ga0224558_1056765	All Organisms → cellular organisms → Bacteria	1557	Open in IMG/M
3300025406\|Ga0208035_1024532	Not Available	969	Open in IMG/M
3300025432\|Ga0208821_1003899	All Organisms → cellular organisms → Bacteria	4862	Open in IMG/M
3300025432\|Ga0208821_1004964	All Organisms → cellular organisms → Bacteria	3967	Open in IMG/M
3300025432\|Ga0208821_1005672	All Organisms → cellular organisms → Bacteria → Acidobacteria	3568	Open in IMG/M
3300025442\|Ga0208034_1005971	All Organisms → cellular organisms → Bacteria	4856	Open in IMG/M
3300025442\|Ga0208034_1007335	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 59-55	4147	Open in IMG/M
3300025442\|Ga0208034_1008612	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3650	Open in IMG/M
3300025442\|Ga0208034_1033027	Not Available	1224	Open in IMG/M
3300025453\|Ga0208455_1002836	All Organisms → cellular organisms → Bacteria	4928	Open in IMG/M
3300025453\|Ga0208455_1002939	All Organisms → cellular organisms → Bacteria	4823	Open in IMG/M
3300025459\|Ga0208689_1001421	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12613	Open in IMG/M
3300025459\|Ga0208689_1003379	All Organisms → cellular organisms → Bacteria → Acidobacteria	7094	Open in IMG/M
3300025459\|Ga0208689_1005645	All Organisms → cellular organisms → Bacteria	4887	Open in IMG/M
3300025460\|Ga0208562_1046067	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300025480\|Ga0208688_1001083	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12447	Open in IMG/M
3300025480\|Ga0208688_1004189	All Organisms → cellular organisms → Bacteria	4895	Open in IMG/M
3300025496\|Ga0208191_1005941	All Organisms → cellular organisms → Bacteria	3953	Open in IMG/M
3300025506\|Ga0208937_1003299	All Organisms → cellular organisms → Bacteria	4881	Open in IMG/M
3300026313\|Ga0209761_1274734	Not Available	611	Open in IMG/M
3300027625\|Ga0208044_1001826	All Organisms → cellular organisms → Bacteria → Acidobacteria	11095	Open in IMG/M
3300027812\|Ga0209656_10418821	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	597	Open in IMG/M
3300027824\|Ga0209040_10099684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1647	Open in IMG/M
3300027824\|Ga0209040_10190048	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300027857\|Ga0209166_10234646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	977	Open in IMG/M
3300028882\|Ga0302154_10048977	All Organisms → cellular organisms → Bacteria → Proteobacteria	2421	Open in IMG/M
3300029914\|Ga0311359_10937792	Not Available	590	Open in IMG/M
3300029916\|Ga0302148_1001756	All Organisms → cellular organisms → Bacteria	6460	Open in IMG/M
3300029919\|Ga0302141_1039766	All Organisms → cellular organisms → Bacteria	1286	Open in IMG/M
3300029920\|Ga0302142_1030565	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1726	Open in IMG/M
3300029922\|Ga0311363_10663894	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1000	Open in IMG/M
3300029956\|Ga0302150_10357723	Not Available	541	Open in IMG/M
3300029994\|Ga0302283_1013438	All Organisms → cellular organisms → Bacteria → Proteobacteria	4975	Open in IMG/M
3300030041\|Ga0302274_10059892	All Organisms → cellular organisms → Bacteria → Proteobacteria	2190	Open in IMG/M
3300030518\|Ga0302275_10292983	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	899	Open in IMG/M
3300031233\|Ga0302307_10034387	All Organisms → cellular organisms → Bacteria → Proteobacteria	2764	Open in IMG/M
3300032160\|Ga0311301_10041512	All Organisms → cellular organisms → Bacteria → Acidobacteria	11065	Open in IMG/M
3300032160\|Ga0311301_10130899	All Organisms → cellular organisms → Bacteria	4662	Open in IMG/M
3300033158\|Ga0335077_10011439	All Organisms → cellular organisms → Bacteria	11094	Open in IMG/M
3300033818\|Ga0334804_024926	All Organisms → cellular organisms → Bacteria → Acidobacteria	2002	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	55.75%
Terrestrial	Environmental → Terrestrial	44.25%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	55.75%
Soil	Environmental → Terrestrial → Soil	30.97%
Peat	Environmental → Terrestrial → Peat	13.27%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	55.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	13.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.08%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	27.43%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	27.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	13.27%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.19%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.65%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	27.43%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	22.12%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	8.85%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	7.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.42%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	4.42%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.54%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.65%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.77%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.77%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009547	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009636	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300022872	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300025406	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)	Environmental	Open in IMG/M
3300025432	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40 (SPAdes)	Environmental	Open in IMG/M
3300025442	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)	Environmental	Open in IMG/M
3300025453	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)	Environmental	Open in IMG/M
3300025459	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)	Environmental	Open in IMG/M
3300025460	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150 (SPAdes)	Environmental	Open in IMG/M
3300025480	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes)	Environmental	Open in IMG/M
3300025496	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40 (SPAdes)	Environmental	Open in IMG/M
3300025506	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029916	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_1	Environmental	Open in IMG/M
3300029919	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2	Environmental	Open in IMG/M
3300029920	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_3	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029956	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2	Environmental	Open in IMG/M
3300029994	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_4	Environmental	Open in IMG/M
3300030041	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1	Environmental	Open in IMG/M
3300030518	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033818	Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_100128691	3300001356	Peatlands Soil	AYKPPRDSMSRTLLSLAGFQVIITGRFWVIAEGLTRQTFEQ*
JGI12269J14319_101006613	3300001356	Peatlands Soil	AYKPPRDSMSRTLLSLAGFQVIITGRFWVIAEEKKLS*
Ga0070730_103422531	3300005537	Surface Soil	DIGHALGGYKPLRASMSRTLFSLAGFQVITIGRFWVIAEA*
Ga0066661_102222702	3300005554	Soil	IGHAHGGYKPPRVSMSQTPLSLAGFQVILIGRFWVIAEAE*
Ga0066704_103287593	3300005557	Soil	DIGHAHGGYKPPRVSMSQTPLSLAGFQVILIGRFWVIAEVHVEIW*
Ga0066699_103084293	3300005561	Soil	YKPPRVSMSQTPLSLAGFQVILIGRFWVIAEVKPLIT*
Ga0066699_103111393	3300005561	Soil	DIGHAHGGYKPPRVSMSQTPLSLAGFQVILIGRFWVIAEAQTSCFGGVPPAW*
Ga0066659_102415993	3300006797	Soil	HAHGGYKPPRVSMSQTPLSLAGFQVILIGRFWVIAEGCATMAV*
Ga0066710_10003055813	3300009012	Grasslands Soil	QDIGHAHGGYKPPRVSMSQTPLSLAGFQVILIGRFWVIAEDPSRG
Ga0116128_10147505	3300009518	Peatland	QDIGHAHGAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEA*
Ga0116128_10798781	3300009518	Peatland	GHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAKDRDRAN*
Ga0116108_100642512	3300009519	Peatland	QDIGHAHGAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEDNGA*
Ga0116225_10030758	3300009524	Peatlands Soil	MGDRSHAHGGYMSTWESMSWTLLSLAGFQVILSGRFWVIAEPSIVLV*
Ga0116225_12910631	3300009524	Peatlands Soil	DIGHAHGAYKPPRDSMSRTLLSFAGFQVISIGRFWVIAEAT*
Ga0116136_10084285	3300009547	Peatland	QDIGHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAKDRDRAN*
Ga0116136_10099043	3300009547	Peatland	QDIGHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAMM*
Ga0116111_10093627	3300009616	Peatland	QDIGHAHGAYKPPRESMSRTPLSLAGFQVILIGRFWVIAEGIRLEKVSS*
Ga0116111_10121031	3300009616	Peatland	QDIGHAHGAYKPPRESMSRTPLSLAGFQVILIGRFWVIAEVQIVNELVL*
Ga0116115_10238244	3300009631	Peatland	GPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAKDRDRAN*
Ga0116102_10056901	3300009632	Peatland	AYKPPRESMSRTLLSLAGFQVILIGRFCVIAEDNGA*
Ga0116102_10655821	3300009632	Peatland	GHAHGAYKPPPASMSQTLLSLAGFQVILIGRFWVIAEGLGGSPNNPD*
Ga0116112_100110324	3300009636	Peatland	QDIGHAHGAYKPPRDSMSRTLLSLAGFQVIITGRFWVIAEADPPSS*
Ga0116112_10054381	3300009636	Peatland	GAYKPPRDSMSRTLLSLAGFQVIITGRFWVIAEDGGPRRLLV*
Ga0116130_10059511	3300009762	Peatland	GAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEDNGA*
Ga0074045_105028192	3300010341	Bog Forest Soil	GHAHGAYKPPPASMSQTLLSLAGFQVILIGRFWVIAEALSRVVLP*
Ga0074044_103526961	3300010343	Bog Forest Soil	GAYKPPRESMSRTLLSLAGFQVIISGRFWVIAEGGTLA*
Ga0136449_10003291913	3300010379	Peatlands Soil	QDIGHAHGAYKPPRDSMSRTLLSLAGFQVIITGRFWVIAEEKKLS*
Ga0136449_1001402019	3300010379	Peatlands Soil	GAYKPPPDSMSRTLLSLAGFQVIISGRFWVIAED*
Ga0136449_1001736465	3300010379	Peatlands Soil	QDIGHAHGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAK*
Ga0137362_110111011	3300012205	Vadose Zone Soil	DIGHAHGAYKPPRESMSRTLPWLGGFQVILIGRVLSDR*
Ga0137362_114960721	3300012205	Vadose Zone Soil	DIGHAHGGYKPPRVSMSRTLLSLAGFQVILIGRF*
Ga0137378_103999961	3300012210	Vadose Zone Soil	QDIGHAHGGHKPPRVSMSQTPLSLAGFQVILIGRFLLIAED*
Ga0137372_110851012	3300012350	Vadose Zone Soil	QDIGHAPGGYKPPRASMSRTLFSLAGFQVILIGRFWVIAEAKSS*
Ga0137366_102695093	3300012354	Vadose Zone Soil	QDIGHAPGGYKPPRASMSRTLFSLAGFQVILIGRFWVIAEGTRMFR*
Ga0137366_102705211	3300012354	Vadose Zone Soil	QDIGHAPGGYKPPRASMSRTLFSLAGFQVILIGRFWVIAEVG*
Ga0137384_104601621	3300012357	Vadose Zone Soil	HGGHKPPRVSMSQTPLSLAGFQVILIGRFLLIAEETLKWY*
Ga0126369_134331972	3300012971	Tropical Forest Soil	LLFVQDIGHAHGGYKTSQVSMSRTLFSLAGFQVITIGWFCVIAEGEHRYNGSFIATQ*
Ga0181518_100360201	3300014156	Bog	QDIGHAHGAYKPPRDSMSRTLLSLAGFQVIITGRFWVIAEDGGPRRLLV*
Ga0181531_101329553	3300014169	Bog	QDIGHAHGAYKPPRDSMSRTLLSLAGFQVIISGRFWVIAEGVQHASM*
Ga0182014_100222836	3300014491	Bog	QDIGHAHGAYKPLRESMSRTLFSLAGFQVILIGRFWVIAEVATRPAIR*
Ga0182014_100264868	3300014491	Bog	QDIGHAHGAYKPLRESMSRTLFSLAGFQVILIGRFWVIAEAQKSEL*
Ga0182014_100871791	3300014491	Bog	QDIGHAHGAYKPPRESMSRTLFSLAGFQVIISGRFWVIAEASGTEL*
Ga0182014_101082891	3300014491	Bog	QDIGHAHGAYKPLRESMSRTLFSLAGFQVILIGRFWVIAEVMNTIF*
Ga0182013_101449173	3300014492	Bog	QDIGHAHGAYKPPRDSMSRALLSLAGFQVIISGRFWVIAEG*
Ga0181536_100928311	3300014638	Bog	DIGHAHGAYKPPRDSMSRTLLSLAGFQVIITGRFWVIAEADPPSS*
Ga0181511_10115761	3300016702	Peatland	DIGHAHGAYKPPRDSMSRTLLSLAGFQVIITGRFWVIAEDGGPRRLLV
Ga0187856_101203613	3300017925	Peatland	QDIGHAHGAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEDNGA
Ga0187856_10404382	3300017925	Peatland	QDIGHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAMM
Ga0187849_11059073	3300017929	Peatland	QDIGHAHGAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEG
Ga0187848_100283165	3300017935	Peatland	QDIGHAHGAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEA
Ga0187891_10012011	3300017996	Peatland	QDIGHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEG
Ga0187891_100139817	3300017996	Peatland	QDIGHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEVRETISEGRQQSS
Ga0187891_100500714	3300017996	Peatland	QDIGHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEVQNV
Ga0187891_13014241	3300017996	Peatland	QDIGHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAKDRDRAN
Ga0187815_100963171	3300018001	Freshwater Sediment	DIGHAPGGYKLPRASMSRTPFSLAGFQVITIGRFWVIAEGSA
Ga0187868_12526321	3300018002	Peatland	QDIGHGPGAYKPPRESMSRTLLSLAGFQVILIGRLWVIAEAMM
Ga0187876_10481801	3300018003	Peatland	DIGHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEGVECPII
Ga0187880_12554872	3300018016	Peatland	LFLLFVQDIGHAHGAYKPPRESMSRTLLSLAGFQVIITGRFWVIAEAEH
Ga0187880_14149332	3300018016	Peatland	LFVQDIGHAHGAYKPPPASMSRTLFSLAGFQVIISGRFWVIAEE
Ga0187874_100111331	3300018019	Peatland	IGHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAKDRDRAN
Ga0187874_103613701	3300018019	Peatland	IGHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAMM
Ga0187864_103232502	3300018022	Peatland	QDIGHAHGAYKPPPASMSQTLLSLAGFQVILIGRFWVIAEA
Ga0187857_100019331	3300018026	Peatland	QDIGHAHGAYKPPRDSMSRTLLSLAGFQVIITGRFWVIAEADPPSS
Ga0187857_100108331	3300018026	Peatland	QDIGHAHGAYKPPRDSMSRTLLSLAGFQVIITGRFWVIAEDGGPRRLLV
Ga0187875_106010162	3300018035	Peatland	HAHGAYKPPRDSMSRTLLSLAGFQVILSGRFWVIAEATGTMR
Ga0187883_106225092	3300018037	Peatland	HGAYKPPPASMSQTLLSLAGFQVIINGRFWVIAEVISFLTHWL
Ga0187862_100546535	3300018040	Peatland	QDIGHAHGAYKPPRDSMSRTLLSLAGFQVIITGRFWVIAEAPQKQQTAQAPR
Ga0187858_101008271	3300018057	Peatland	QDIGHAHGAYKPPRESMSRTPLSLAGFQVILIGRFWVIAEVQIVNELVL
Ga0187858_101072511	3300018057	Peatland	QDIGHALGGYRPLRASTSRTLFSLAGFQVITIGRFWVIAEGPAAAS
Ga0187858_106145251	3300018057	Peatland	DIGHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAKDRDRAN
Ga0187858_109183112	3300018057	Peatland	AHGAYKPPRDSMSRTLFSLAGFQVIITGRFWVIAEANQP
Ga0224526_10354061	3300022872	Soil	AHGAYKPPRDSTSRTLFSLAGFQVIITGRFWVIAED
Ga0224558_100420311	3300023090	Soil	FVQDIGHAHGAYKPLRESMSRTLFSLAGFQVILIGRFWVIAEAQKSEL
Ga0224558_10567651	3300023090	Soil	FVQDIGHAHGAYKPLRESMSRTLFSLAGFQVILIGRFWVIAEVATRPAIR
Ga0208035_10245322	3300025406	Peatland	VQDIGHAHGAYKPPRDSMSRTLFSLAGFQVIISGRFWVIAEALVRVNE
Ga0208821_100389913	3300025432	Peatland	DIGHAHGAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEDNGA
Ga0208821_10049641	3300025432	Peatland	FVQDIGHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAKDRDRAN
Ga0208821_10056723	3300025432	Peatland	FVQDIGHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAMM
Ga0208034_100597113	3300025442	Peatland	HGAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEDNGA
Ga0208034_10073351	3300025442	Peatland	IGHAHGAYKPPRESMSRTPLSLAGFQVILIGRFWVIAEGIRLEKVSS
Ga0208034_10086121	3300025442	Peatland	FVQDIGHAHGAYKPPRESMSRTPLSLAGFQVILIGRFWVIAEVQIVNELVL
Ga0208034_10330271	3300025442	Peatland	FVQDIGHAHGAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEA
Ga0208455_10028361	3300025453	Peatland	AHGAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEG
Ga0208455_10029391	3300025453	Peatland	AYKPPRESMSRTLLSLAGFQVILIGRFCVIAEDNGA
Ga0208689_10014211	3300025459	Peatland	VQDIGHAHGAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEG
Ga0208689_10033791	3300025459	Peatland	GAYKPPRDSMSRTLLSLAGFQVIITGRFWVIAEDGGPRRLLV
Ga0208689_100564513	3300025459	Peatland	VQDIGHAHGAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEDNGA
Ga0208562_10460672	3300025460	Peatland	GHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAKDRDRAN
Ga0208688_10010831	3300025480	Peatland	FVQDIGHAHGAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEG
Ga0208688_100418913	3300025480	Peatland	FVQDIGHAHGAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEDNGA
Ga0208191_10059415	3300025496	Peatland	VQDIGHGPGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEAKDRDRAN
Ga0208937_100329913	3300025506	Peatland	GHAHGAYKPPRESMSRTLLSLAGFQVILIGRFCVIAEDNGA
Ga0209761_12747342	3300026313	Grasslands Soil	VQDIGHARGGYKPPRASMSRTLFSLAGFQVILIGRFWVIAEV
Ga0208044_10018265	3300027625	Peatlands Soil	MGDRSHAHGGYMSTWESMSWTLLSLAGFQVILSGRFWVIAEPSIVLV
Ga0209656_104188211	3300027812	Bog Forest Soil	GHAHGAYKPPPASMSQTLLSLAGFQVILIGRFWVIAEALSRVVLP
Ga0209040_100996843	3300027824	Bog Forest Soil	AYKPPPASMSQTLLSLAGFQVILIGRFWVIAEAGFRN
Ga0209040_101900484	3300027824	Bog Forest Soil	AYKPPPASMSQTLLSLAGFQVILIGRFWVIAEAVKVRP
Ga0209166_102346461	3300027857	Surface Soil	QDIGHALGGYKPLRASMSRTLFSLAGFQVITIGRFWVIAEA
Ga0302154_100489773	3300028882	Bog	HAHGAYKPPRDSTSRTLFSLAGFQVIITGRFWVIAEAERSSYQKYD
Ga0311359_109377921	3300029914	Bog	HGAYKPPRDSMSRALLSLAGFQVIISGRFWVIAEAKPKNDAA
Ga0302148_10017561	3300029916	Bog	IGHAHGAYKPPRDSTSRTLFSLAGFQVIITGRFWVIAEAERSSYQKYD
Ga0302141_10397663	3300029919	Bog	HAHGAYKPPRDSTSRTLFSLAGFQVIITGRFWVIAED
Ga0302142_10305653	3300029920	Bog	QDIGHAHGAYKPPRDSTSRTLFSLAGFQVIITGRFWVIAEAVSA
Ga0311363_106638941	3300029922	Fen	VQDIGHAHGAYKPPRDSMSRALLSLAGFQVIISGRFWVIAEAKPKNDAA
Ga0302150_103577232	3300029956	Bog	QDIGHAHGAYKPPRDSTSRTLFSLAGFQVIITGRFWVIAEAERSSYQKYD
Ga0302283_10134381	3300029994	Fen	RDSTSRTLFSLAGFQVIITGRFWVIAEAERSSYQKYD
Ga0302274_100598921	3300030041	Bog	FVQDIGHAHGAYKPPRDSTSRTLFSLAGFQVIITGRFWVIAEAERSSYQKYD
Ga0302275_102929833	3300030518	Bog	VQDIGHAHGAYKPPRDSTSRTLFSLAGFQVIITGRFWVIAEAVSA
Ga0302307_100343878	3300031233	Palsa	PPRDSMSRTLLSLAGFQVILSGRFWVIAEEMEAPD
Ga0311301_1004151211	3300032160	Peatlands Soil	FVQDIGHAHGAYKPPRDSMSRTLLSLAGFQVIITGRFWVIAEEKKLS
Ga0311301_101308998	3300032160	Peatlands Soil	IGHAHGAYKPPRESMSRTLLSLAGFQVILIGRFWVIAEVRGTG
Ga0335077_1001143911	3300033158	Soil	MKKIFGADIGHALGGYKRLRASMSQTLFSLAGFQVITIGRFWVIAEVDG
Ga0334804_024926_3_131	3300033818	Soil	VQDIGHAHGAYKPPRDSMSRALLSLAGFQVIISGRFWVIAEG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082417

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences