Metagenome Family F082311

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082311
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	73 residues
Representative Sequence	MRQHPDPDPYEEDEEDLEELGTPVYQGSGLSVRALTAEELQRFLDAHQGQPARPLGSGWAALDPPGHPLG
Number of Associated Samples	65
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	98.02 %
% of genes near scaffold ends (potentially truncated)	82.30 %
% of genes from short scaffolds (< 2000 bps)	80.53 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (82.301 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (30.973 % of family members)
Environment Ontology (ENVO)	Unclassified (34.513 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.168 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.27% β-sheet: 7.14% Coil/Unstructured: 79.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13604	AAA_30	7.96
PF08378	NERD	3.54
PF01548	DEDD_Tnp_IS110	1.77
PF02371	Transposase_20	1.77
PF00072	Response_reg	0.88
PF13612	DDE_Tnp_1_3	0.88
PF00782	DSPc	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	3.54

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.30 %
All Organisms	root	All Organisms	17.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.30 %
cellular organisms	root	All Organisms → cellular organisms	17.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.30 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	17.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.30 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	17.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.30 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.30 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.77 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.77 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.30 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.77 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.77 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.30 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1.77 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	1.77 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.30 %
Actinoplanes campanulatus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes campanulatus	1.77 %
Mycolicibacterium smegmatis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium smegmatis	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.30 %
Actinoplanes campanulatus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes campanulatus	1.77 %
Mycolicibacterium smegmatis MC2 155	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium smegmatis → Mycolicibacterium smegmatis MC2 155	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000858\|JGI10213J12805_10389504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	711	Open in IMG/M
3300004463\|Ga0063356_105371254	Not Available	550	Open in IMG/M
3300005457\|Ga0070662_101192047	Not Available	654	Open in IMG/M
3300005981\|Ga0081538_10008963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8407	Open in IMG/M
3300005981\|Ga0081538_10036550	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3202	Open in IMG/M
3300005981\|Ga0081538_10179558	Not Available	908	Open in IMG/M
3300006049\|Ga0075417_10198310	Not Available	949	Open in IMG/M
3300006844\|Ga0075428_101882838	Not Available	622	Open in IMG/M
3300009147\|Ga0114129_10269378	Not Available	2279	Open in IMG/M
3300009147\|Ga0114129_11889356	Not Available	724	Open in IMG/M
3300009162\|Ga0075423_10732334	Not Available	1045	Open in IMG/M
3300009789\|Ga0126307_10055979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes campanulatus	3087	Open in IMG/M
3300009789\|Ga0126307_10497713	Not Available	984	Open in IMG/M
3300009818\|Ga0105072_1126148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300009820\|Ga0105085_1122543	Not Available	523	Open in IMG/M
3300009840\|Ga0126313_10135029	Not Available	1849	Open in IMG/M
3300009840\|Ga0126313_10517944	Not Available	956	Open in IMG/M
3300010037\|Ga0126304_10110327	Not Available	1748	Open in IMG/M
3300010037\|Ga0126304_10547881	Not Available	778	Open in IMG/M
3300010037\|Ga0126304_11063711	Not Available	553	Open in IMG/M
3300010041\|Ga0126312_10660337	Not Available	754	Open in IMG/M
3300010042\|Ga0126314_10387430	Not Available	1006	Open in IMG/M
3300010042\|Ga0126314_10604487	Not Available	800	Open in IMG/M
3300010042\|Ga0126314_10911028	Not Available	650	Open in IMG/M
3300010044\|Ga0126310_10128795	Not Available	1581	Open in IMG/M
3300010045\|Ga0126311_10160000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium smegmatis → Mycolicibacterium smegmatis MC2 155	1612	Open in IMG/M
3300010045\|Ga0126311_10490354	Not Available	959	Open in IMG/M
3300010045\|Ga0126311_10595091	Not Available	875	Open in IMG/M
3300010045\|Ga0126311_10699016	Not Available	810	Open in IMG/M
3300012355\|Ga0137369_10026089	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5423	Open in IMG/M
3300012358\|Ga0137368_10614443	Not Available	690	Open in IMG/M
3300014487\|Ga0182000_10573714	Not Available	539	Open in IMG/M
3300018051\|Ga0184620_10167618	Not Available	717	Open in IMG/M
3300018053\|Ga0184626_10316356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	646	Open in IMG/M
3300018072\|Ga0184635_10263070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	681	Open in IMG/M
3300018076\|Ga0184609_10206793	Not Available	915	Open in IMG/M
3300018081\|Ga0184625_10606313	Not Available	536	Open in IMG/M
3300018432\|Ga0190275_12213759	Not Available	628	Open in IMG/M
3300018476\|Ga0190274_10163515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1901	Open in IMG/M
3300018476\|Ga0190274_10602577	Not Available	1125	Open in IMG/M
3300019377\|Ga0190264_11515637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	584	Open in IMG/M
3300019767\|Ga0190267_11266279	Not Available	547	Open in IMG/M
3300027277\|Ga0209846_1058296	Not Available	586	Open in IMG/M
3300027750\|Ga0209461_10204234	Not Available	505	Open in IMG/M
3300027809\|Ga0209574_10062893	Not Available	976	Open in IMG/M
3300027873\|Ga0209814_10182037	Not Available	905	Open in IMG/M
3300027907\|Ga0207428_10132088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1910	Open in IMG/M
3300027907\|Ga0207428_10707626	Not Available	720	Open in IMG/M
3300028587\|Ga0247828_11190369	Not Available	510	Open in IMG/M
3300028597\|Ga0247820_11128474	Not Available	564	Open in IMG/M
3300028707\|Ga0307291_1116267	Not Available	672	Open in IMG/M
3300028744\|Ga0307318_10081929	Not Available	1083	Open in IMG/M
3300028793\|Ga0307299_10367797	Not Available	539	Open in IMG/M
3300028796\|Ga0307287_10008014	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3491	Open in IMG/M
3300028796\|Ga0307287_10105256	Not Available	1065	Open in IMG/M
3300028811\|Ga0307292_10300514	Not Available	672	Open in IMG/M
3300028812\|Ga0247825_11081852	Not Available	584	Open in IMG/M
3300028814\|Ga0307302_10434249	Not Available	650	Open in IMG/M
3300028814\|Ga0307302_10459099	Not Available	631	Open in IMG/M
3300028819\|Ga0307296_10305972	Not Available	867	Open in IMG/M
3300028828\|Ga0307312_10805217	Not Available	623	Open in IMG/M
3300028876\|Ga0307286_10016549	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2338	Open in IMG/M
3300028876\|Ga0307286_10025433	Not Available	1928	Open in IMG/M
3300028878\|Ga0307278_10073258	Not Available	1544	Open in IMG/M
3300028878\|Ga0307278_10207002	Not Available	874	Open in IMG/M
3300028881\|Ga0307277_10280474	Not Available	737	Open in IMG/M
3300028885\|Ga0307304_10136424	Not Available	1012	Open in IMG/M
3300030516\|Ga0268255_10153277	Not Available	675	Open in IMG/M
3300031548\|Ga0307408_101724282	Not Available	597	Open in IMG/M
3300031548\|Ga0307408_102010526	Not Available	556	Open in IMG/M
3300031731\|Ga0307405_10164413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1576	Open in IMG/M
3300031731\|Ga0307405_10195902	Not Available	1463	Open in IMG/M
3300031731\|Ga0307405_10526396	Not Available	952	Open in IMG/M
3300031731\|Ga0307405_10700879	Not Available	838	Open in IMG/M
3300031824\|Ga0307413_10551939	Not Available	935	Open in IMG/M
3300031824\|Ga0307413_10807423	Not Available	789	Open in IMG/M
3300031824\|Ga0307413_10968451	Not Available	727	Open in IMG/M
3300031824\|Ga0307413_12110737	Not Available	510	Open in IMG/M
3300031824\|Ga0307413_12177552	Not Available	502	Open in IMG/M
3300031901\|Ga0307406_10313484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1210	Open in IMG/M
3300031903\|Ga0307407_10726875	Not Available	750	Open in IMG/M
3300031995\|Ga0307409_100118089	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2239	Open in IMG/M
3300031995\|Ga0307409_100499562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes campanulatus	1184	Open in IMG/M
3300031995\|Ga0307409_101052014	Not Available	834	Open in IMG/M
3300031995\|Ga0307409_101209609	Not Available	779	Open in IMG/M
3300032002\|Ga0307416_100053140	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3248	Open in IMG/M
3300032002\|Ga0307416_100493747	Not Available	1287	Open in IMG/M
3300032002\|Ga0307416_101351407	Not Available	818	Open in IMG/M
3300032002\|Ga0307416_102346971	Not Available	633	Open in IMG/M
3300032005\|Ga0307411_10519786	Not Available	1010	Open in IMG/M
3300032005\|Ga0307411_11117373	Not Available	711	Open in IMG/M
3300032005\|Ga0307411_12309713	Not Available	505	Open in IMG/M
3300032126\|Ga0307415_100045598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2940	Open in IMG/M
3300032126\|Ga0307415_100340613	Not Available	1258	Open in IMG/M
3300032126\|Ga0307415_100607212	Not Available	974	Open in IMG/M
3300032126\|Ga0307415_100673719	Not Available	930	Open in IMG/M
3300032126\|Ga0307415_100869732	Not Available	828	Open in IMG/M
3300032126\|Ga0307415_101047121	Not Available	761	Open in IMG/M
3300032126\|Ga0307415_101961059	Not Available	569	Open in IMG/M
3300032126\|Ga0307415_102315302	Not Available	527	Open in IMG/M
3300033550\|Ga0247829_10514729	Not Available	992	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.98%
Host-Associated	Host-Associated	46.02%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.67%
Plants	Host-Associated → Plants	46.02%
Aquatic	Environmental → Aquatic	5.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	38.94%
Sediment	Environmental → Aquatic → Sediment	5.31%
Roots	Host-Associated → Plants → Roots	2.65%
Phylloplane	Host-Associated → Plants → Phylloplane	2.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	38.05%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.31%
Sand	Environmental → Terrestrial → Soil → Sand	2.65%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.65%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	2.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	38.05%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.31%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.54%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	2.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	30.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	23.89%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	15.04%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.08%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.54%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.65%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	2.65%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	2.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300027277	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10213J12805_103895041	3300000858	Soil	MRQHPDPYEDEDDEEDLEEFGTPVYRGSGLSVRALTAEELQRFLDAHPGHPAELLGSGWDALDPPGHPLGVPRTSS
Ga0063356_1053712542	3300004463	Arabidopsis Thaliana Rhizosphere	MRQHPDSDPHRGEDEDLEGLGTPVYQGSGLSVRALTAEELQRFLDAHADQPAELLGSGWATLDSSRHPLGGPRTSPAVTLPEPAGP
Ga0070662_1011920471	3300005457	Corn Rhizosphere	MGQHLNSDPNDHEDEDLEELGTPVYQGSGLSVRALTAEELQRFLDAHQGQPAELLGGAWDALDPP
Ga0081538_100089637	3300005981	Tabebuia Heterophylla Rhizosphere	MRQHHDPDPYDEDEEDPEELGTPVYQGSGLSVRALTAEELQRFLDAHHDQPAELVGSGWASLDPPEQPL
Ga0081538_100365501	3300005981	Tabebuia Heterophylla Rhizosphere	MRQHPDPDPDEDDIEELGTAVYQGSGLSVRALTAEELQRFLDAHQDQPAQLLGSGWAALDPPEHPLRAPRTPPAATQ
Ga0081538_101795582	3300005981	Tabebuia Heterophylla Rhizosphere	MRQHPDDFHHEDPGRDDDEEDLEELGTPVYRGSGLSVRALTAEELQRFLDAHHDQPAELLGS
Ga0075417_101983103	3300006049	Populus Rhizosphere	MGQHSNPDPDRDEDDLEELGTPFYQGTGLSVRALTAEELQQFLDAHTDQPAQPLPSSWAALDRPGPLRKVART
Ga0075428_1018828382	3300006844	Populus Rhizosphere	MRQHPDPDPDEEDLEPFGTPVYQGSGLSVRALTAEELQRFLDAHTGQPAQLLGSGWAAHDPPGDPLVVPRTPPAEPITGSLGSPGRSALAQ
Ga0114129_102693784	3300009147	Populus Rhizosphere	MGQHSNPDPDRDEDDLEELGTPFYQGTGLSVRALTAEELQQFLDAHTDQPAQLLGSGWAALD
Ga0114129_118893562	3300009147	Populus Rhizosphere	MRQHHDPDDFHDEDLDGENLDAEFGRPVYVGTGLSVRALTAEELQRFLDAHIGQPAQLLGSGWAALEPLGGPRTP
Ga0075423_107323343	3300009162	Populus Rhizosphere	MHPDPDRYEDEHLDELGTPVYEGSGLSVRALTAEELQPFLDAHTGQPAELMGSGWAALDP
Ga0126307_100559794	3300009789	Serpentine Soil	MGQHPNLDPDKDEDDPQALGTPFYQGNGLTVRALSAEELRQFLDAHADQPAELLGSGWAALD*
Ga0126307_104977131	3300009789	Serpentine Soil	MRQHPDDFHDQDLDPYGGDNDDLEELGTPVYQGSSLSVRALTAEELQRFLDAHHDQPAELLGSGWATLDPSGQPL
Ga0126307_108879701	3300009789	Serpentine Soil	MGQHHDPDDLDRQDLDDDLGRPVYHGDGLSVRELSAEELQRFLDAHAGQPAQLLGSGWSGQDPPGPPLVGPRTPPAA
Ga0105072_11261481	3300009818	Groundwater Sand	MRQHPDTDPYEEDEEDLEELGTPVYQGSGLSVRALTADELQRFLDAHHDQPAQLLGSGWAALDPPGHPLGGPRTPPAATLPV
Ga0105085_11225432	3300009820	Groundwater Sand	MRQHPNPEPDDYQHEDLEELGTPVYQGTGLSVRALTAEELQRFLDAHADQPAEPLGSGWATLDPPRHRFGGPRTPPAATPPVVPAG
Ga0126313_101350291	3300009840	Serpentine Soil	MRQHPDPDPDEDEEDLEELGTPVYQGSGLSVRALTAEELQWFLDANADQPAQLLGSAWATHNPPGQPLGGPRTPLAATQPVVPAE
Ga0126313_105179441	3300009840	Serpentine Soil	MHQHHDPDPYEDEELGTPVYQGTGLSVRALTAEELQRFLDAHHGQPAQLLGSGWAALDPPGRPFGDPRTPPAA
Ga0126304_101103272	3300010037	Serpentine Soil	MGQQPTPDPDPDKDLEELGALVYAGSGLSVRALTAEQLQRFLESHTGQPTQPLGSGWAALDPAGHESPRPTPPVRAEPITGS
Ga0126304_105478812	3300010037	Serpentine Soil	MGQHPNPDPDKDEEDLEDLGTPFYQGNGLSVRALTAEELQQFLAIHADQPAQLLGSGWAAPDRPGHPLTVPRTAPGAK
Ga0126304_110637111	3300010037	Serpentine Soil	MRQHQDPDPYEDEEDLDELGSPIYQGTGLSVRALTAEELDWFLDAHAGQPAQQLGSGWAALHPSGRLLGVPGTPPALTTAGAGT*
Ga0126312_106603371	3300010041	Serpentine Soil	MRQHHDPDDFYEDLDRHDDQEGLEELGTPVYQGSGLSVRALTAEELQRFLDAHAGQSGQLLRSGWTALDPPAHPFGEPTRT
Ga0126314_103874301	3300010042	Serpentine Soil	MRQHPDHCHHEDPGRDDDEEEDLEELGMPVYEGSGLSVRALTAEELQRFLDAHQGQPAELLGSGWATLDPPGQPLGVPRTPLGAGLDPPSPPAA
Ga0126314_106044872	3300010042	Serpentine Soil	MRQHPDPDPDDENEEGLEELGTPVYRGSGLSVRALTAEELQQFLDAHADQPAELLGSGWAALDRPGHPLTVPRTPPGAEPAPP
Ga0126314_109110282	3300010042	Serpentine Soil	MGQYPAPDPDDYEDEEDLEELGTWVYQGSGLTVRELTAEQLQGFLDAHQGQPAQLLGSG
Ga0126310_101287952	3300010044	Serpentine Soil	MRQHPDDFHDQDLDPYGGDNDDLEELGTPVYQGTGLSVRALTAEELQRFLDAHHDQPAELLGSGWATLDPSGQPLGAPGPRRPQR
Ga0126311_101600002	3300010045	Serpentine Soil	MRQHPDDFHDQDLDPYGGDNDDLEELGTSVYQGTGLSVRALTAEELQRFLDAHDDQPAELLG
Ga0126311_104903542	3300010045	Serpentine Soil	MRQHPDDFHDQDLDPYGGDNDDLEELGTPVYQGTGLSVRALTAEELQRFLDAHDDQPAELLGS
Ga0126311_105950912	3300010045	Serpentine Soil	MRQHPDDFHHEDPGRDDDEEDLEELGMPVYQGSGLSVRALTAEELQRFLDAHQGQPVELLGSGWATLDPSGQSLGVPQTPPEAGLDPP
Ga0126311_106990161	3300010045	Serpentine Soil	MRQHPDPDDYEDEDDLEEFGTPVYQGIGLSVRALTAEELQRFLDAHHGQPAQLLGSGWAALDSPGQPLGGPRIPAEAGHEPLGLPA
Ga0137369_100260894	3300012355	Vadose Zone Soil	MRQHPDPDDYEDEDLEEFGTPVYQGSGLSVRALTAEELQRFLDTHADQPAELLGSGWAALDPPGHP
Ga0137368_106144432	3300012358	Vadose Zone Soil	MRQHPDPDPYEEDEEDLEELGTPVYQGSGLSVRALTAEELQRFLDAHQGQPARPLGSGWAALDPPGHPLG
Ga0182000_105737142	3300014487	Soil	MRQHPTPDPDPHKDEDLEELGAPVYEGSGLSVRALTAEELQQFLDAHHGEPARRLGSGWAALDPPGHPSGVPQTPPAAERK
Ga0184620_101676182	3300018051	Groundwater Sediment	MGQHPNPNPDPDKDEDDLEELGAPFYQGNGLSVRALTAEELQRFLDAHADQPAQLLGSGWATLDPSGHPLGGPRTA
Ga0184626_103163562	3300018053	Groundwater Sediment	MRQHHDPDDCHDEDLHRYNEDEDLEELGTPVYQGSGLSVRALTAEELQRFLDAHAGQPAELLGSGWAAL
Ga0184635_102630701	3300018072	Groundwater Sediment	MGQHPNPDPDPDKDELEELGTPFYQGNSLSVRALTAEELQQFLDAHTDQPAQLLGSGWA
Ga0184609_102067932	3300018076	Groundwater Sediment	MRHHPGPNDDEADENLEELGTPVYQGTGLSVRALTAEELQRFLDAHQGQPAQLLGGGWTALDPPDDLP
Ga0184625_106063131	3300018081	Groundwater Sediment	MGQHPNPDPDPDKDELEELGTPFYEGNGLSVRALTAQELQQFLDAHADQPAERLGSGWAALDPPEHPLTVPSTPPG
Ga0190275_122137592	3300018432	Soil	MGQHPNPNPDNDEDHLEALGTPFYQGTGLSVRALTAEELQQFLDAHADQPTEPLDSGWAALDRPGHPL
Ga0190269_111301471	3300018465	Soil	MGQHHDPDDLDHQDLDDTSGRPVYHGDGLSVRELSAEELQRFLDAHAGQPAQLLGSG
Ga0190274_101635152	3300018476	Soil	MRQHQRPDPYEDKEDLEELGTPIYQGTGLSVRALTAEELQRFLGAHHGQPAELLGSGWAALDPPGHPLGGPRTPRLRRCRCRPSRSPGA
Ga0190274_106025772	3300018476	Soil	MRQHPDPDHHRDEDLDQELGTPVYQGTGLSVRALTAEELDRFLDAHADQPTRPVGSGWTALD
Ga0190264_115156372	3300019377	Soil	MGQHPNPDPDGYQDEEDLEELGTPVYQGSGLSVRALTAEELQRFLDAHAGQPTQRLGSGWAAPERPGQPRKGPRTPPG
Ga0190267_112662792	3300019767	Soil	MRQHPDDFHHEDPGRCDDQEDLEELGAPVYQGTGLSVRALTAEELQRFLDAHHDQAAELVGSGWAALDQPEHPLGVLWTPPEAGLDPPS
Ga0224452_12466692	3300022534	Groundwater Sediment	MGPHHDPDDLNHQDLDDLGRPVYHGDGLSVRELSAEELQRFLDAHAGQPAQLLGSGWAALNPSGHPEGVPRTPRDATAAAPAEPI
Ga0209846_10582962	3300027277	Groundwater Sand	MRQHQDPDPYDEDEEDPEELGTPLYQGSGLSVRALTAEELQRFLDAHHGQPAQLLGSGWTALDPPGDPLGGPRTPPAATLPVAP
Ga0209461_102042341	3300027750	Agave	MGQHPNPDPDPDEEDLEKLGTPFYQGNGLTVRALTAEELQRFLDAHADQPVQLLGSGWAAVDRPGH
Ga0209574_100628932	3300027809	Agave	MRQHPDNPGPDGYEDEDDLEALGTPIYQGSGLSVRALTAEQLQRFLDAHAGQPAQRLGSGWAALDPPARSLRGPRTPPAAEP
Ga0209814_101820372	3300027873	Populus Rhizosphere	MGQHSNPDPDRDEDDLEELGTPFYQGTGLSVRALTAEELQQFLDAHTDQPAQLLGSGWAALDRPGPLRKVARTPPRAEPAPPQPQ
Ga0207428_101320881	3300027907	Populus Rhizosphere	MGQDPDPDAGEEDLEALGTPVYEGSGLSVRALTAEELQRFLDAHADQPAQRLGSGWGALDLLGRTLGGP
Ga0207428_107076262	3300027907	Populus Rhizosphere	MHPDPDRYEDEHLDELGTPVYEGSGLSVRALTAEELQPFLDAHTGQPAELMGSGWAALDPPGHPLR
Ga0247828_111903691	3300028587	Soil	MRQHPDPDPDPDEDGLEAWGTPVYQGSGLSVRALTAEELQRFLDAHHGQPDLRLGSGWAALDPPGRPFG
Ga0247820_111284741	3300028597	Soil	MGQHPNPDPDKDEDDLEELGTPFYQGNGLTVRALSAEELQQFLDAHADQPAELLGSGWTALDRPGHPRKLPR
Ga0307291_11162672	3300028707	Soil	MGQQPNPDPDGYEDEEDPEELGTPVYQGSGLSVRALTAEELQQFLAAHADQPAQRLGSGWATLDPSGHPLGGP
Ga0307318_100010841	3300028744	Soil	MRQHSDPEDFPGQDLDDEVCRPVYQGDGLTVRELNAEELQRFVEIHADQPAQLLGSGWAALDPPGHPVGAPRTP
Ga0307318_100819292	3300028744	Soil	MRQHPDPNPDPDGNEDEEDLEALGTPFYQGSGLSVRALTAEELQQFLHAHTGQPTRRLGSGWAALDPPTHPLEG
Ga0307299_103677971	3300028793	Soil	MGQHPNPDPDPDEDDLEELGTPFYQGNGLTVRALSAEELQQFLDAHTDQPAERLGSGWAAPDRPGHPLTVPR
Ga0307287_100080141	3300028796	Soil	MRQHPDPNPDDHQDEEDLEELGTPVYQGSGLSVRALTAEELQRFLDAHQGQPAQRLGNGWATLDPPPDPLGGPWTLPAASQPVVPAGVPAGS
Ga0307287_101052561	3300028796	Soil	MGQHPNPDPDPDEDDLEALGTPFYQGNGLTVRALSAEELQQFHDAHTDQPAERLGSGW
Ga0307292_103005141	3300028811	Soil	MGQHPNPDRNRDEHELEELGTLFYQGTGLSVRALTAEELQQFLNAHADQSGERLGSGWTALDRPGTLLRVPRT
Ga0247825_110818522	3300028812	Soil	MRQNPDPDRHEDEDDSEELGTSVYRGGGLSVRGLTAEELQRFLDAHPGQSTRRLGSGWAALDPA
Ga0307302_104342491	3300028814	Soil	MRQHQDPDDYEDEDLEELGTPVYQGTGLSVRALTAEELDRFLDAHQSQPAELLGSGW
Ga0307302_104590991	3300028814	Soil	MGQHPNPDPDKDEDDLEALGTPFYQGTGLTVRALSAEELQQFLDAHANQPAQPLGSGWAALDRPGHP
Ga0307302_104594151	3300028814	Soil	MRQHHDPDDLDHQDLDDGLGRPIYQGDGLSVRELTAEELQRFLDAHPGQPAQRLGSGWAALNPSGQPHGRLRTPPGPA
Ga0307296_103059721	3300028819	Soil	MGQQPNPDPDGYEDEEDLEELGTPVYQGSGLSVRALTAEELQRFLAAHADQPAQLLGSG
Ga0307312_106377631	3300028828	Soil	MRQHSDPEDFPGQDLDDEVCRPVYQGDGLTVRELNAEELQRFVEIHADQPAQLLGSG
Ga0307312_108052171	3300028828	Soil	MRQHPNPDPDPYEEDLEDLGTPLYQGSGLSVRALTAEELQRFLDAHTSQPAERLGSGWAALDPPGHPLGGPRTP
Ga0307289_100130682	3300028875	Soil	MGPHHDPDDLNHQDLDDLGRPVYHGDGLSVRELSAEELQRFLDAHAGQPAQLLGSGWAALNPSGHPE
Ga0307286_100165492	3300028876	Soil	MGQHPNPDPDKDEDDLEELGTPFYQGNGLSVRALTAEELQRFLNAHADQSPQLVGSGWAALDRPGHPLGMPR
Ga0307286_100254332	3300028876	Soil	MGQHPTPDPDPDKHEDLEALGASVYEGSGLSVRALTAEELQRFLDAHTGQPTRPLGSGWAALDPPGHPAGVPW
Ga0307286_100903242	3300028876	Soil	MGQHHDPDDLDHQDLDDLGRPVYHGDGLSVRELSAEELQRFLDAHAGQPAQLLGSGWAALNPSGHPEGVPRTPR
Ga0307278_100732581	3300028878	Soil	MRQHPDPDRDDYEDEEDLEELGTPVYQGSGLSVRALTAEELQRFLDAHQGQPAELLGSGWAALEPPR
Ga0307278_102070021	3300028878	Soil	MGQHPDPDPNPYEDEEDLEELGTPVYQGSGLSVRALTADELQRFLDAQTGQSTQLLGSGWATLEPPRH
Ga0307277_102804741	3300028881	Soil	MVQHPNPDPDEDDLEALGTPFYQGNGLSVRALTAEELQQFLDAHADQPTEPLGSGWAALDRPGYPLTVSRIPPGAQ
Ga0307304_101364241	3300028885	Soil	MGQHPNPDPDPDEDDLEALGTPFYQGNGLTVRALSAEELQQFLDAHTDQPAERLGSGWA
Ga0268255_101532771	3300030516	Agave	MRQHPDDFHHEDLDPYDGDGDEDLEELGTPVYQGSGLSVRALTAEELQRFLDAHHDQPVQLL
Ga0307408_1017242821	3300031548	Rhizosphere	MRQHPDPDDYEDEDLEEFGTPVYQGTGLSVRALTAEELQRFLDAHAGEPAELLGRGWSALDPPRDPSGVPRTPPAAALRVVPAE
Ga0307408_1020105261	3300031548	Rhizosphere	MVQHPNPDPDEDDLEALGTPFYQGNGLSVRALTAEELQQFLDAHADQPTEPLGSGWAALDRPGHPLTVSRIPPGAEPASPQPQPVLP
Ga0307405_101644132	3300031731	Rhizosphere	MGQHPNPDPNDYEDEDLEELGTTVYRGDSLSVRALTAEELQQFLDAHHDQPAQRLGSGWATLDPPPGHPSGVPRTPFGS
Ga0307405_101959021	3300031731	Rhizosphere	MGQHPDPDPNPYEDEEDLEELGTPVYQGSGLSVRALTAEELQRFLAAHADQPAQLLGSGWATLEPPRHPL
Ga0307405_105263962	3300031731	Rhizosphere	MGQHPNPNPDNDEDHLEALGTPFYQGNGLSVQALTAEELQQFLDAHADQSAEPLGSGWAALDRPAPTPSGFFGPLWEPSLRHSNPSRWS
Ga0307405_107008792	3300031731	Rhizosphere	MGQHPNPDPDKDEEDLEALGTPFYQGNGLTVRVLSADELQQFLDAHADQPAEPLGSGWAALDRPAPTPSGFFG
Ga0307413_105519391	3300031824	Rhizosphere	EDDDLEELGTSVYEGSGLSVRALTAEELQQFLDAHASQPTHLLGSGWAALAAPP
Ga0307413_108074232	3300031824	Rhizosphere	MGQHPNPDPDKDEEDLEALGTPFYQGNGLTVRVLSADELQQFLDAHADQPAEPLGSGWAALDRPAPTPSGFFGPLWEPSLRHSNPSRWS
Ga0307413_109684512	3300031824	Rhizosphere	MRQHPDPDPDEDEDPEELGTPVYQGSGLSVRALTAEELQRFLDAHHGQPAQLLGSGWATLDP
Ga0307413_121107371	3300031824	Rhizosphere	MGQHPTPDPDPYKDEDLEALGTSVYAGSGLSVRALSAEELQRFLDAHAGQPAQLLGSGWGTLDPPGHPFGVPQTPPAAMLTPPGS
Ga0307413_121775522	3300031824	Rhizosphere	MVQHPNPDPDEDDLEALGTPFYQGNGLSVRALTAEELQQFLDAHANQPTEPLGSGWAALDRPGHPLTVSRIPPG
Ga0307406_103134841	3300031901	Rhizosphere	YDEDLDPYDEEDPEEFGTPVYQGTGLSVRALTAEELQRFLDANAGQPGELLGSGWSALDPLDD
Ga0307407_107268752	3300031903	Rhizosphere	MRQHHHPDEFHDEDEDLEELGTPVYQGSGLSVRALTAAQLQRFLDAHQEQPAERLGSGWTGLDPPTHPLGGPR
Ga0307409_1001180891	3300031995	Rhizosphere	MGQHPNPDPNDYEDEDLEELGTTVYQGDSLSVRALTAEELQQFLDAHHDQPAQRLGSGWATLDPPPG
Ga0307409_1004995622	3300031995	Rhizosphere	MGQHPNPDPDKDEEDLEELGAPFYQGNGLTVRVLSADELQQFLDAHADQPAEPLGSGWAALDRPAPTPSGFFGPLWEPSLRHSNPSRWS
Ga0307409_1008754872	3300031995	Rhizosphere	MRQHHDPDDLHDQDLDGENLDDEFGRSVYQGSGLSVRALTAEELQRFLAAHAGQPARLLGSGWATLEP
Ga0307409_1010520141	3300031995	Rhizosphere	MRQPQDPDPYEEDEEDLEQFGTPVYQGTGLSVRALTAEELQRFLDAHAGQPAEL
Ga0307409_1012096091	3300031995	Rhizosphere	MRQHPDPNDYEDDENLEELGTPVYQGTGLSVRALTAEELQRFLDAHADQPAQLLGGGWTALDPPDDLPGVSQTSPGA
Ga0307416_1000531402	3300032002	Rhizosphere	MGQHPNPDPDKDEEDLEELGAPFYQGNGLTVRVLSADELQQFLDAHADQPAEPLGSGWAALDRPAPTPSGFFGPL
Ga0307416_1004937472	3300032002	Rhizosphere	MGQHPNPDPGPDKDEDDLEELGTPFYQGTGLSVRALTTEELQQFLDAHADQPAALLGSGW
Ga0307416_1013514071	3300032002	Rhizosphere	MGQHPDRNDVRHEDLDRYHDEEDPEELGTPVYQGTGLSVRALTAEELQRFLDAHAGQPGELLGSGWAAL
Ga0307416_1023469712	3300032002	Rhizosphere	MRQHPDPDPDDYKDEEMEELGTPVYQGSGLSVRALTAEELQRFLDAHADQPAEVLGSGWAALDRPGHPLTVPRTPPGAAPAPLQPQSR
Ga0307414_116269491	3300032004	Rhizosphere	MRQHSDSEDFHGQDLDDEVGRPVYQGDGLTVRELNAEELQRFLEIHADQPAQLLGSGWTALHRPRHPVG
Ga0307411_105197861	3300032005	Rhizosphere	MGQHPNPDPNDYEDEDLEELGTTVYRGDSLSVRALTAEELQQFLDAHHDQPAQRLGSGWATLDPPPGHPSGVPRTPSVAEPEPSGLQLPVLAGPA
Ga0307411_111173732	3300032005	Rhizosphere	MRQHPDPDDYEDEDLEESGTPVYQGTGLSVRALTAEELQRFLDAHAGEPAELLGRGWSALDPP
Ga0307411_123097131	3300032005	Rhizosphere	MRHQPPDRDRYEDENLEELGTPVYQGDGLTVRGLDAEELQRFLDAHAGQPAERLGSGWAALDPPGRPHGVPRTPT
Ga0307415_1000455981	3300032126	Rhizosphere	MRQHPDPDDYEDEDLEEFGTPVYQGTGLSVRALTAEELQRFLDAHAGEPAELLGRGWSALDPPRDPSGVPRTPPAA
Ga0307415_1003406132	3300032126	Rhizosphere	MHQHPAPDPDDYENEEDLEELGTSVYQGSGLTVRELTAEELQRFLDAHQGQPAQLLGSGWAG
Ga0307415_1006072122	3300032126	Rhizosphere	MGQHPNPDPDKDEDNLEELGTPFYQGDGLSVRALTAEELQRFLDAHADQSPELVGSGWAAPDRPGHPLAVLR
Ga0307415_1006737192	3300032126	Rhizosphere	MRQHPDPDPDDYKDEEMEELGTPVYQGSGLSVRELTAEELQRFLDAHAGQPAQLLGSG
Ga0307415_1008697322	3300032126	Rhizosphere	MGQQPNPDPNPYEDEEDPEELGTPVYQGSGLSVRALTADELQQFLAAHADQPAQQLGSGWATLDPSGHPLRV
Ga0307415_1010471212	3300032126	Rhizosphere	MRQHPDPNPYEDEDLEELSSPVYQGSGLSVRALTTEELQRFLDANADQPAQRLGSGWAALDPPGDLSGVSRTSLGAGFEPPGPLAT
Ga0307415_1019610592	3300032126	Rhizosphere	MGQHPNPDPDEDDLEELGTPFYQGNGLSVRALTAEELQQFLDAHADQPTEPLGSGWAALDRPG
Ga0307415_1023153021	3300032126	Rhizosphere	MGQHPNPDPDKDEDDLGELGTPFYQGSGLSVRALTAEELQQFLDAHADQPAQLLGSGWAALDRPGHPLKVPRTPPGGEPEPPQ
Ga0307415_1024938581	3300032126	Rhizosphere	MGQHHDPDDLDHQDLDDTLGRPVYHGDGLSVRELSAEELQRFLDAHASQPAQLLGSGWAA
Ga0268251_105964302	3300032159	Agave	MGQHHDPDDLDHQDLDDDLGRPVYHGDGLSVRELSAEELQRFLDAHTGQPAQLLGSGWAALDPSGHPEGVPRTPPA
Ga0247829_105147292	3300033550	Soil	MGQHPNPDPDKDEDDLEELGTPFYQGNGLSVRALTAEELQQFLDAHADQPTELLGSGGAAPDRPGHPLTVL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F082311

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences