Metagenome / Metatranscriptome Family F082213

Basic Information
Family ID	F082213
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	45 residues
Representative Sequence	GVLLRSLPGDVPVGRASVGGTLAGPVAGHRYAAAVGLGLAGRAS
Number of Associated Samples	90
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.78 %
% of genes near scaffold ends (potentially truncated)	92.92 %
% of genes from short scaffolds (< 2000 bps)	88.50 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Most Common Taxonomy
Group	Bacteria (65.487 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (50.443 % of family members)
Environment Ontology (ENVO)	Unclassified (53.097 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (49.558 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.56% β-sheet: 0.00% Coil/Unstructured: 69.44%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF16483	Glyco_hydro_64	9.73
PF01408	GFO_IDH_MocA	9.73
PF00400	WD40	6.19
PF00753	Lactamase_B	2.65
PF01381	HTH_3	1.77
PF00701	DHDPS	1.77
PF07702	UTRA	1.77
PF12681	Glyoxalase_2	1.77
PF04978	DUF664	1.77
PF00106	adh_short	0.88
PF13302	Acetyltransf_3	0.88
PF02894	GFO_IDH_MocA_C	0.88
PF01740	STAS	0.88
PF00082	Peptidase_S8	0.88
PF10518	TAT_signal	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	3.54
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.49 %
Unclassified	root	N/A	34.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.49 %
Unclassified	root	N/A	34.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.49 %
Unclassified	root	N/A	34.51 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	62.83 %
Unclassified	root	N/A	34.51 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	61.95 %
Unclassified	root	N/A	34.51 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	52.21 %
Unclassified	root	N/A	34.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	21.24 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	7.96 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.65 %
Nakamurellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales	0.88 %
Acidothermales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales	0.88 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.88 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	21.24 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	7.96 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.77 %
unclassified Acidothermales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → unclassified Acidothermales	0.88 %
Dongia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Dongia	0.88 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.88 %
Nakamurellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	21.24 %
Streptacidiphilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus	7.08 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1.77 %
unclassified Dongia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Dongia → unclassified Dongia	0.88 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	0.88 %
Acidothermales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → unclassified Acidothermales → Acidothermales bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	21.24 %
unclassified Streptacidiphilus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → unclassified Streptacidiphilus	7.08 %
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	1.77 %
Dongia sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Dongia → unclassified Dongia → Dongia sp.	0.88 %
Nakamurella deserti	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella deserti	0.88 %
Nocardioides cynanchi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides cynanchi	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Acidothermales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → unclassified Acidothermales → Acidothermales bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	21.24 %
Streptacidiphilus sp. P02-A3a	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → unclassified Streptacidiphilus → Streptacidiphilus sp. P02-A3a	7.08 %
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	1.77 %
Dongia sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Dongia → unclassified Dongia → Dongia sp.	0.88 %
Nakamurella deserti	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella deserti	0.88 %
Nocardioides cynanchi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides cynanchi	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Acidothermales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → unclassified Acidothermales → Acidothermales bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005436\|Ga0070713_100510191	Not Available	1135	Open in IMG/M
3300005439\|Ga0070711_100916027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	749	Open in IMG/M
3300005563\|Ga0068855_101466757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	701	Open in IMG/M
3300005602\|Ga0070762_10234881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Dongia → unclassified Dongia → Dongia sp.	1134	Open in IMG/M
3300005719\|Ga0068861_101059708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	777	Open in IMG/M
3300005764\|Ga0066903_103810114	Not Available	810	Open in IMG/M
3300007076\|Ga0075435_100682221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	892	Open in IMG/M
3300007788\|Ga0099795_10502462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → unclassified Streptacidiphilus → Streptacidiphilus sp. P02-A3a	565	Open in IMG/M
3300009088\|Ga0099830_10597543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → unclassified Streptacidiphilus → Streptacidiphilus sp. P02-A3a	905	Open in IMG/M
3300009088\|Ga0099830_11533700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	555	Open in IMG/M
3300009090\|Ga0099827_10029147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3961	Open in IMG/M
3300009792\|Ga0126374_11666475	Not Available	529	Open in IMG/M
3300010046\|Ga0126384_12307011	Not Available	520	Open in IMG/M
3300010333\|Ga0134080_10269588	Not Available	756	Open in IMG/M
3300010361\|Ga0126378_11294139	Not Available	824	Open in IMG/M
3300010366\|Ga0126379_11106275	Not Available	898	Open in IMG/M
3300010366\|Ga0126379_11483127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	784	Open in IMG/M
3300010376\|Ga0126381_102977017	Not Available	673	Open in IMG/M
3300010398\|Ga0126383_11523570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella deserti	758	Open in IMG/M
3300010403\|Ga0134123_11572363	All Organisms → cellular organisms → Bacteria → Terrabacteria group	704	Open in IMG/M
3300010876\|Ga0126361_10551526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1233	Open in IMG/M
3300012198\|Ga0137364_10233792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1355	Open in IMG/M
3300012207\|Ga0137381_10154342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1976	Open in IMG/M
3300012208\|Ga0137376_10543906	Not Available	1006	Open in IMG/M
3300012363\|Ga0137390_11030303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → unclassified Streptacidiphilus → Streptacidiphilus sp. P02-A3a	774	Open in IMG/M
3300012925\|Ga0137419_11464744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → unclassified Streptacidiphilus → Streptacidiphilus sp. P02-A3a	578	Open in IMG/M
3300012929\|Ga0137404_11663815	Not Available	592	Open in IMG/M
3300012948\|Ga0126375_11263008	Not Available	618	Open in IMG/M
3300015264\|Ga0137403_11111582	Not Available	636	Open in IMG/M
3300016371\|Ga0182034_11289592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	637	Open in IMG/M
3300016371\|Ga0182034_11455798	Not Available	599	Open in IMG/M
3300016445\|Ga0182038_10750891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	853	Open in IMG/M
3300018433\|Ga0066667_11908638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	542	Open in IMG/M
3300021086\|Ga0179596_10344927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	747	Open in IMG/M
3300021402\|Ga0210385_10162890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1603	Open in IMG/M
3300021403\|Ga0210397_11436098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → unclassified Streptacidiphilus → Streptacidiphilus sp. P02-A3a	536	Open in IMG/M
3300021404\|Ga0210389_11205544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → unclassified Streptacidiphilus → Streptacidiphilus sp. P02-A3a	582	Open in IMG/M
3300021405\|Ga0210387_11438534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → unclassified Streptacidiphilus → Streptacidiphilus sp. P02-A3a	592	Open in IMG/M
3300021559\|Ga0210409_10181980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1919	Open in IMG/M
3300021560\|Ga0126371_10468618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides cynanchi	1406	Open in IMG/M
3300027662\|Ga0208565_1100707	Not Available	870	Open in IMG/M
3300027855\|Ga0209693_10018528	Not Available	3334	Open in IMG/M
3300027895\|Ga0209624_10267859	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300027895\|Ga0209624_10443659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → unclassified Streptacidiphilus → Streptacidiphilus sp. P02-A3a	865	Open in IMG/M
3300027905\|Ga0209415_10320788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1316	Open in IMG/M
3300027905\|Ga0209415_10322057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1312	Open in IMG/M
3300027908\|Ga0209006_11454272	Not Available	521	Open in IMG/M
3300031543\|Ga0318516_10369296	Not Available	827	Open in IMG/M
3300031543\|Ga0318516_10831858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300031544\|Ga0318534_10052429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2286	Open in IMG/M
3300031544\|Ga0318534_10186517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1198	Open in IMG/M
3300031545\|Ga0318541_10405098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	762	Open in IMG/M
3300031549\|Ga0318571_10118360	Not Available	886	Open in IMG/M
3300031549\|Ga0318571_10195336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	721	Open in IMG/M
3300031572\|Ga0318515_10009427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4289	Open in IMG/M
3300031572\|Ga0318515_10196232	Not Available	1081	Open in IMG/M
3300031572\|Ga0318515_10544099	Not Available	619	Open in IMG/M
3300031573\|Ga0310915_10516506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	848	Open in IMG/M
3300031573\|Ga0310915_10747902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	689	Open in IMG/M
3300031640\|Ga0318555_10030828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2609	Open in IMG/M
3300031670\|Ga0307374_10166950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1661	Open in IMG/M
3300031679\|Ga0318561_10835184	Not Available	506	Open in IMG/M
3300031713\|Ga0318496_10743266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300031723\|Ga0318493_10043809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2091	Open in IMG/M
3300031724\|Ga0318500_10372932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	707	Open in IMG/M
3300031751\|Ga0318494_10311914	Not Available	908	Open in IMG/M
3300031778\|Ga0318498_10086707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1414	Open in IMG/M
3300031778\|Ga0318498_10197250	Not Available	913	Open in IMG/M
3300031782\|Ga0318552_10101249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1421	Open in IMG/M
3300031782\|Ga0318552_10253378	Not Available	893	Open in IMG/M
3300031782\|Ga0318552_10342324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	761	Open in IMG/M
3300031792\|Ga0318529_10353244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	684	Open in IMG/M
3300031792\|Ga0318529_10494170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300031793\|Ga0318548_10351662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	723	Open in IMG/M
3300031798\|Ga0318523_10082875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1555	Open in IMG/M
3300031798\|Ga0318523_10446749	Not Available	641	Open in IMG/M
3300031799\|Ga0318565_10293264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	790	Open in IMG/M
3300031805\|Ga0318497_10644217	Not Available	594	Open in IMG/M
3300031821\|Ga0318567_10547652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	657	Open in IMG/M
3300031831\|Ga0318564_10479009	Not Available	541	Open in IMG/M
3300031833\|Ga0310917_10504702	Not Available	823	Open in IMG/M
3300031860\|Ga0318495_10266614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	765	Open in IMG/M
3300031894\|Ga0318522_10026955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1915	Open in IMG/M
3300031896\|Ga0318551_10341597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	846	Open in IMG/M
3300031896\|Ga0318551_10348129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	838	Open in IMG/M
3300031897\|Ga0318520_10959642	Not Available	539	Open in IMG/M
3300031912\|Ga0306921_11506327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	735	Open in IMG/M
3300031941\|Ga0310912_11119896	Not Available	601	Open in IMG/M
3300031942\|Ga0310916_10405179	Not Available	1161	Open in IMG/M
3300031954\|Ga0306926_10968489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1014	Open in IMG/M
3300032001\|Ga0306922_11287696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	740	Open in IMG/M
3300032009\|Ga0318563_10029020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2757	Open in IMG/M
3300032009\|Ga0318563_10326050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	831	Open in IMG/M
3300032052\|Ga0318506_10268839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	756	Open in IMG/M
3300032055\|Ga0318575_10320547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → unclassified Acidothermales → Acidothermales bacterium	784	Open in IMG/M
3300032055\|Ga0318575_10350555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	748	Open in IMG/M
3300032055\|Ga0318575_10427358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	672	Open in IMG/M
3300032063\|Ga0318504_10276431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	793	Open in IMG/M
3300032064\|Ga0318510_10082045	Not Available	1200	Open in IMG/M
3300032067\|Ga0318524_10221815	Not Available	969	Open in IMG/M
3300032067\|Ga0318524_10551114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	606	Open in IMG/M
3300032068\|Ga0318553_10414357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	705	Open in IMG/M
3300032076\|Ga0306924_11656311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	672	Open in IMG/M
3300032076\|Ga0306924_11686374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	665	Open in IMG/M
3300032090\|Ga0318518_10197840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1029	Open in IMG/M
3300032180\|Ga0307471_101202335	Not Available	922	Open in IMG/M
3300033004\|Ga0335084_12460953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501	Open in IMG/M
3300034820\|Ga0373959_0003155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2626	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.58%
Host-Associated	Host-Associated	4.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.58%
Plants	Host-Associated → Plants	4.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.58%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.84%
Loam	Environmental → Terrestrial → Soil → Loam	7.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%
Clay	Environmental → Terrestrial → Soil → Clay	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	58.41%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.77%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	50.44%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.08%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025574	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallow (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082213

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070713_1005101911	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LRSLPGAVAVGRGNVGGTLAGTPAGHRYAAALGLALAGNE*
Ga0070711_1009160272	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LRALPGDVPVGRASVGGTLAGALAGHRYAAAVGLGLARPDR*
Ga0070665_1014013552	3300005548	Switchgrass Rhizosphere	PDGVSAGRANVGATLAGPPAGHRHAAALGLALAGGPG*
Ga0068855_1014667571	3300005563	Corn Rhizosphere	ELLGVLLRALPDGVSAGRANVGATLAGPPAGHRHAAALGLALAGGPG*
Ga0070762_102348813	3300005602	Soil	DEELLGVLLRSLPDGVAAGRGNVGATLPGPSPGHRYAAALGLAMADDSG*
Ga0068861_1010597082	3300005719	Switchgrass Rhizosphere	VLLRSLPGAVAVGRGNVGGTLAGTPAGHRYAAALGLALAGNG*
Ga0066903_1038101141	3300005764	Tropical Forest Soil	LPGDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALAETEP*
Ga0075435_1006822212	3300007076	Populus Rhizosphere	PGAVAVGRGNVGGTLAGTPAGHRYAAALGLALAGNG*
Ga0099795_105024622	3300007788	Vadose Zone Soil	DELLGVLLRTLPEGVIAGRGNVGGTLAGPSAGHRHAAALGLALAPPDRAVP*
Ga0099830_105975431	3300009088	Vadose Zone Soil	ELLGVLLRTLPEGVTAGRGNVGGTLAGPAAGHRHAAALGLALAPPERAVP*
Ga0099830_115337001	3300009088	Vadose Zone Soil	LLGVLLRTLPAGVPVGRANVGGTLAGPAAGHRHAVALGLALARD*
Ga0099827_100291473	3300009090	Vadose Zone Soil	DDELAGVLARSLPDTVMIGRASVGGTLDGGPLGHRYAAALGLALAPGRP*
Ga0126374_116664753	3300009792	Tropical Forest Soil	AGDDELLGVLLRSLPGDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALPEIER*
Ga0126384_123070113	3300010046	Tropical Forest Soil	VPVGRASVGGTLGGPPAGHRYAAAVGLGLSALPEIKR*
Ga0134080_102695881	3300010333	Grasslands Soil	MLGVLLRSLPTAVAVGRGNVGGTLAGTPAGHRYAAALGLALAGNG*
Ga0126372_126295332	3300010360	Tropical Forest Soil	LRSLPGDVPVGRASVGGTLRGAPAGHRYAAAVGLAMGYPPLIPVSASV*
Ga0126378_112941392	3300010361	Tropical Forest Soil	VVLRSLPGDVPVGRASVGGTLTGAPVGHRYAAAVGLAMTRRAAG*
Ga0126379_111062751	3300010366	Tropical Forest Soil	LLRSLPGDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALAEIEP*
Ga0126379_114831272	3300010366	Tropical Forest Soil	LRALPGDSPVGRASVGGTLAGAAAGHRYAAAVGLGLADPAV*
Ga0126381_1029770172	3300010376	Tropical Forest Soil	GDDELLGVLLRSLPGDVPVGRASVGGTLAGPVAGHRYAAAVGLGLAGRGS*
Ga0126381_1036205202	3300010376	Tropical Forest Soil	DELLGVLLRSLPGDVPVGRASVGGTLRGAPAGHRYAAAVGLAMRYPPLIPVSASG*
Ga0126383_115235702	3300010398	Tropical Forest Soil	VLLRSLPGDVPVGRASVGGTLDGPPAGHRYAAAVGLALSALPRN*
Ga0134123_115723632	3300010403	Terrestrial Soil	DDEMLGVLLRSLPGAVAVGRGNVGGTLAGSPAGHRYAAALGLALAGNE*
Ga0126361_105515261	3300010876	Boreal Forest Soil	DELLGVLLRALPGDVPVGRASVGGTLAGALAGHRYAAAVGLGLARPAQ*
Ga0137364_102337922	3300012198	Vadose Zone Soil	MLGVLLRSLPGAVAVGRGNVGGTLTGTPAGHRYAAALGLALAGNG*
Ga0137381_101543421	3300012207	Vadose Zone Soil	DDELLGVLLRALPAGVSVGRADVGGTLAGSPVGHRYAVALGLALGDVPRGS*
Ga0137376_105439062	3300012208	Vadose Zone Soil	MLGVLLCSLPGAVAVGRGNVGGTLTGTPAGHRYAAALGLALAGNG*
Ga0137390_110303032	3300012363	Vadose Zone Soil	ELLGVLLRTLPDGVTAGRGNVGGTLAGPSAGHRHAAALGLALAPPERAVP*
Ga0137419_114647441	3300012925	Vadose Zone Soil	DELLGVLLRTLPEGVTAGRGNVGGTLAGPSAGHRHAAALGLALAPPDRAVP*
Ga0137404_116638151	3300012929	Vadose Zone Soil	LRSLPAAVAVGRGNVGGTLTGTPAGHRYAAALGLALAGNG*
Ga0126375_112630082	3300012948	Tropical Forest Soil	LGVLLRSLPGDIPVGRASVGGTLDGPPAGHRYAAAVGLGLSALAELGL*
Ga0137403_111115821	3300015264	Vadose Zone Soil	AGDDEMLGVLLRSLPAAVAVGRGNVGGTLTGTPAGHRYAAALGLALAGNG*
Ga0182034_112895922	3300016371	Soil	LLRALPGHVPVGRATVGGTLAGPPAGHRYAAAVGLGLTTPTS
Ga0182034_114557982	3300016371	Soil	GVLLRSLPGDVPVGRASVGGTLAGPVAGHRYAAAVGLGLAGRAS
Ga0182038_107508912	3300016445	Soil	LRSLPGEVPVGRASVGGTLAGPVAGHRYAAAVGLGLAGRGS
Ga0066667_119086382	3300018433	Grasslands Soil	VLLRSLPGAVAAGRGNVGGTLTGAAAGHRYAAALGLALAGND
Ga0179596_103449271	3300021086	Vadose Zone Soil	AGDDELLGVLLRTLPDGVPAGRASVGGTLPGQPVGHRYAVALGLALSQR
Ga0210385_101628902	3300021402	Soil	PAGDDELLGVLLRALPGAVPVGRASVGATLTGPPAGHRYAAAVGLALAPGTP
Ga0210397_114360981	3300021403	Soil	ELLGVLLRTLPDGVTAGRGNVGGTLAGPAAGHRHAAALGLALAPGGTAS
Ga0210389_112055442	3300021404	Soil	VLLRTLPEGVTAGRGNVGGTLAGPAAGHRHAAALGLALAPGGTAS
Ga0210387_114385341	3300021405	Soil	ELLGVLLRTLPDGVTAGRGNVGGTLAGPAAGHRHAAALGLALAPPT
Ga0210409_101819801	3300021559	Soil	LPGDVPVGRASVGGTLAGPAAGHRYAAAVGLGLAARGS
Ga0126371_104686182	3300021560	Tropical Forest Soil	VLLRALPGDIPVGRASVGGTLAGAPAGHRYAAAVGLGLAGPTA
Ga0208717_10391232	3300025574	Arctic Peat Soil	LPEGVTAGRGNVGGTLAGPAAGHRHAAALGLALAPGDTAS
Ga0207700_103551462	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LRAWPDGVTAGRGNVGGTLAGPSAGHRHAAALGLALAPPT
Ga0208565_11007071	3300027662	Peatlands Soil	GVLLRALPDGIAAGRGNVGGTLDGPPAGHRYAAALGLALAAAE
Ga0209693_100185284	3300027855	Soil	AGDDELLGVLLRTLPEGVTAGRGNVGGTLAGPAAGHRHAAALGLALAPGGTAS
Ga0209624_102678591	3300027895	Forest Soil	DELLGVLLRSLPEGITVGRGDVGGTLPGISAGHRHAAALGLALAATQRATRQG
Ga0209624_104436592	3300027895	Forest Soil	VLLRTLPEGVTAGRGNVGGTLAGPAAGHRHAAALGLALAPGARPVNARS
Ga0209415_103207881	3300027905	Peatlands Soil	LIGVLLRALPDGIAAGRGNVGGTLDGPPAGHRYAAALGLALAAAE
Ga0209415_103220571	3300027905	Peatlands Soil	LIGVLLRALPDGIAAGRGNVGGTLDGPPAGHRYAAALGLALAAAAE
Ga0209006_114542721	3300027908	Forest Soil	LLRALPGDVPVGRASVGGTLAGALAGHRYAAAVGLGLARPDR
Ga0318516_103692961	3300031543	Soil	LLGVLLRSLPGDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALAEAEQ
Ga0318516_108318582	3300031543	Soil	VVLRSLPADVPVGRANVGGTLAGPPVGHRYAAAVGLAMAAS
Ga0318534_100524291	3300031544	Soil	LPGDVPVGRASVGGTLAGPPAGHRYAAAVGLAMTGSSVPPS
Ga0318534_101865172	3300031544	Soil	VLLRSLPGEVPVGRASVGGTLAGPVAGHRYAAAVGLGLAGRGS
Ga0318541_104050982	3300031545	Soil	DIPVGRASVGGTLAGTPAGHRYAAAVGLGLAGPTV
Ga0318571_101183602	3300031549	Soil	LGVLLRSLPGDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALGEAEQ
Ga0318571_101953362	3300031549	Soil	DDELLGVLLRSLPGDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALAETDL
Ga0318515_100094271	3300031572	Soil	AGDDELLGVLLRALPGDIPVGRASVGGTLAGAPAGHRYAAAVGLGLAGPAV
Ga0318515_101962321	3300031572	Soil	LLGVLLRALPGEVPVGRASVGGTLAGPPAGHRYAAAVGLGLADHAR
Ga0318515_105440991	3300031572	Soil	DDELLGVLLRSLPGDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALAETEL
Ga0310915_105165061	3300031573	Soil	SLPGDVPVGRASVGGTLAGPVAGHRYAAAVGLGLAGRAS
Ga0310915_107479022	3300031573	Soil	GDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALAEAEQ
Ga0318555_100308284	3300031640	Soil	LLRALPGEVPVGRASVGGTLAGPPAGHRYAAAVGLGLADHAR
Ga0307374_101669503	3300031670	Soil	LRTLPAGVAAGRGNVGGTLGGPPAGHRYAAALGLALAGG
Ga0318561_108351841	3300031679	Soil	DDELLGVLLRSLPGDVLVGRASVGGTLDGPPAGHRYVAAVGLGLSALAEIEP
Ga0318496_107432661	3300031713	Soil	DDELLGVLLRSLSGDVPVGRASVGGTLDGPSAGHRYAAAMGLGLSALAD
Ga0318493_100438092	3300031723	Soil	DELLGVLLRALPGDIPVGRASVGGTLAGAPAGHRYAAAVGLGLAGPAV
Ga0318500_103729321	3300031724	Soil	LLRSLPGDVPVGRASVGGTLGGAPAGHRYAAAVGLAMTGSAVR
Ga0318494_103119142	3300031751	Soil	LRSLPADVPVGRANVGGTLAGPPVGHRYAAAVGLAMAGS
Ga0318498_100867072	3300031778	Soil	AYRCPAGDDELLGVLLRSLPGDVPVGRASVGGTLAGPVAGHRYAAAVGLGLAGRGS
Ga0318498_101972502	3300031778	Soil	PGDVLVGRASVGGTLDGPPAGHRYVAAVGLGLSALAEIEP
Ga0318552_101012491	3300031782	Soil	DDELLGVLLRSLPGDVPVGRASVGGTLAGPVAGHRYAAAVGLGLAGRGS
Ga0318552_102533782	3300031782	Soil	PGDVPVGRANVGGTLDGPPAGHRYAAAVGLGLSALAETEL
Ga0318552_103423241	3300031782	Soil	PAGDDELLGVVLRSLPGDVPVGRASVGGTLAGPPAGHRYAAAVGLAMTGSSVPPS
Ga0318529_103532441	3300031792	Soil	SLPSDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALAEAEQ
Ga0318529_104941701	3300031792	Soil	GVLLRSLPGDVPVGRASVGGTLASAPVGHRYAAAVGLAMTGSATPPS
Ga0318548_103516621	3300031793	Soil	LLRSLPGDVPVGRASVGGTLAGPVAGHRYAAAVGLGLAGRGS
Ga0318523_100828751	3300031798	Soil	VLLRSLPGDVPVGRARVGGTLAGPVAGHRYAAAVGLGLAGRGS
Ga0318523_104467491	3300031798	Soil	ELLGVLLRALPGEIPVGRASVGGTLAGTPAGHRYAAAVGLGLAGPTV
Ga0318565_102932642	3300031799	Soil	GDDELLGVLLRSLPSDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALAEAEQ
Ga0318497_106442172	3300031805	Soil	DVPVGRASVGGTLAGPVAGHRYAAAVGLGLAGRAS
Ga0318567_105476521	3300031821	Soil	VVLRSLPGDVPVGRASVGGTLAGPPAGHRYAAAVGLAMTGSSVPPS
Ga0318564_104790091	3300031831	Soil	VLLRSLPGDVLVGRASVGGTLDGPPAGHRYVAAVGLGLSALAEIEP
Ga0310917_105047021	3300031833	Soil	GVVQRSLPADVPVGRANVGGTLAGPPVGHRYAAAVGLAMAGS
Ga0318495_102666141	3300031860	Soil	VVLRSLPVDVPVGRASVGGTLAGPPAGHRYAAAVGLAMTGSSVPPS
Ga0318522_100269552	3300031894	Soil	RALPGDIPVGRASVGGTLAGAPAGHRYAAAVGLGLAGPAV
Ga0318551_103415973	3300031896	Soil	LLGVLMRSLPGDVPVGRASVGGALHGPPAGHRYAAAVGLGLSAPPEAAQ
Ga0318551_103481291	3300031896	Soil	VLRSLPGDVPVGRASVGGTLAGPPAGHRYAAAVGLAMTGSSVPPS
Ga0318520_109596422	3300031897	Soil	DELLGVVLRSLPGDVPVGRASVGGTLAGPPAGHRYAAAVGLAMTGSSVPPS
Ga0306921_115063271	3300031912	Soil	VGRASVGGTLEGPPAGHRYAAAVGLGLSAPPEAAQ
Ga0310912_111198962	3300031941	Soil	DDELLGVLLRALPGDIPVGRASVGGTLAGAPAGHRYAAAVGLGLAGPAV
Ga0310916_104051791	3300031942	Soil	PAGDDELLGVLLRALPGEVPVGRASVGGTLAGPPAGHRYAAAVGLGLADHAR
Ga0306926_109684892	3300031954	Soil	LLGVLLRSLPGDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALAETEL
Ga0306922_112876962	3300032001	Soil	LPADVPVGRANVGGTLAGPPVGHRYAAAVGLAMAAS
Ga0318563_100290201	3300032009	Soil	LLRALPGEVPVGRASVGGTLAGPPAGHRYAAAVGLGLADHAQ
Ga0318563_103260502	3300032009	Soil	LLRALPGDIPVGRASVGGTLAGTPAGHRYAAAVGLGLAGPTV
Ga0318506_102688391	3300032052	Soil	VLLRSLPGDVLVGRASVGGTLDGPPAGHRYVAAVGLGLSALA
Ga0318575_103205472	3300032055	Soil	PGDVPVGRASVGGTLAGPVAGHRYAAAVGLGLAGRAS
Ga0318575_103505552	3300032055	Soil	LLGVLLRSLPGDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALAETDL
Ga0318575_104273582	3300032055	Soil	SLPGDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALAEAEQ
Ga0318504_102764312	3300032063	Soil	AGDDELLGVLLRALPGDVPVGRATVGGTLAGPPAGHRYAAAVGLGLTAPTS
Ga0318510_100820451	3300032064	Soil	LLGVLLRSLPGDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALGEAEQ
Ga0318524_102218151	3300032067	Soil	VLLRALPGEVPVGRASVGGTLAGPPAGHRYAAAVGLGLADHAQ
Ga0318524_105511141	3300032067	Soil	LLGVLLRSLPGDVPVGRASVGGTLRGAPAGHRYAAAVGLAMTGSAVR
Ga0318553_104143571	3300032068	Soil	VLLRSLPSDVPVGRASVGGTLDGPPAGHRYAAAVGLGLSALAEAEQ
Ga0306924_116563112	3300032076	Soil	LLGVVLRSLPADVPVGRANVGGTLAGPPVGHRYAAAVGLAMAAS
Ga0306924_116863741	3300032076	Soil	GVLLRALPGDIPVGRASVGGTLAGTPAGHRYAAAVGLGLAGPTV
Ga0318518_101978401	3300032090	Soil	DELLGVLLRALPGDIPVGRASVGGTLAGTPAGHRYAAAVGLGLAGPTV
Ga0307471_1012023351	3300032180	Hardwood Forest Soil	VVLRSLPGDVPVGRASVGATLAGSPVGHRYAAAVGLAMAVPGPAAGQRDR
Ga0335084_124609532	3300033004	Soil	DDEMLGVLLRSLPGAVAVGRGNVGGTLAGTPAGHRYAAALGLALAGNG
Ga0373959_0003155_3_131	3300034820	Rhizosphere Soil	VLLRSLPGAVAVGRGNVGGTLAGTPAGHRYAAALGLALAGNG

Hidden Markov Model


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