NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F082172

Metagenome / Metatranscriptome Family F082172

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F082172
Family Type Metagenome / Metatranscriptome
Number of Sequences 113
Average Sequence Length 53 residues
Representative Sequence MANTVIALRSSGVTGNTPSLGVLANGELSLNFADGILYYKSSSNTLGSIR
Number of Associated Samples 89
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 99.12 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 91.15 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (87.611 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(17.699 % of family members)
Environment Ontology (ENVO) Unclassified
(67.257 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(72.566 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 16.67%    Coil/Unstructured: 83.33%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 113 Family Scaffolds
PF03406Phage_fiber_2 1.77



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A87.61 %
All OrganismsrootAll Organisms12.39 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2022920000|QLn_FQAYR3Y01CS73TNot Available500Open in IMG/M
3300001843|RCM34_1109945All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage598Open in IMG/M
3300001849|RCM26_1189998Not Available702Open in IMG/M
3300003277|JGI25908J49247_10043657All Organisms → cellular organisms → Bacteria1199Open in IMG/M
3300003277|JGI25908J49247_10046005Not Available1158Open in IMG/M
3300003393|JGI25909J50240_1059053Not Available786Open in IMG/M
3300005580|Ga0049083_10019285Not Available2459Open in IMG/M
3300005581|Ga0049081_10046661Not Available1642Open in IMG/M
3300005581|Ga0049081_10173206Not Available782Open in IMG/M
3300005581|Ga0049081_10293698Not Available561Open in IMG/M
3300005584|Ga0049082_10283870Not Available554Open in IMG/M
3300005585|Ga0049084_10260768Not Available581Open in IMG/M
3300007541|Ga0099848_1272355Not Available587Open in IMG/M
3300008108|Ga0114341_10422384Not Available636Open in IMG/M
3300008116|Ga0114350_1146901Not Available664Open in IMG/M
3300008259|Ga0114841_1114729Not Available1140Open in IMG/M
3300008448|Ga0114876_1041686Not Available2148Open in IMG/M
3300008450|Ga0114880_1126656Not Available952Open in IMG/M
3300008450|Ga0114880_1127200Not Available949Open in IMG/M
3300009027|Ga0102957_1411399Not Available507Open in IMG/M
3300009056|Ga0102860_1040934Not Available1236Open in IMG/M
3300009154|Ga0114963_10522751Not Available629Open in IMG/M
3300009155|Ga0114968_10259493Not Available984Open in IMG/M
3300009158|Ga0114977_10443633Not Available717Open in IMG/M
3300009159|Ga0114978_10062197All Organisms → Viruses → Predicted Viral2535Open in IMG/M
3300009159|Ga0114978_10158337Not Available1454Open in IMG/M
3300009184|Ga0114976_10198333Not Available1107Open in IMG/M
3300009184|Ga0114976_10642825Not Available535Open in IMG/M
3300009185|Ga0114971_10266763Not Available998Open in IMG/M
3300009218|Ga0103848_1037958Not Available928Open in IMG/M
3300009218|Ga0103848_1063590Not Available727Open in IMG/M
3300009233|Ga0103856_10112885Not Available522Open in IMG/M
3300009404|Ga0103853_1017032Not Available717Open in IMG/M
3300011010|Ga0139557_1037057Not Available851Open in IMG/M
3300011010|Ga0139557_1043968Not Available769Open in IMG/M
3300012346|Ga0157141_1041527Not Available572Open in IMG/M
3300012663|Ga0157203_1052040Not Available554Open in IMG/M
3300012665|Ga0157210_1013935All Organisms → Viruses → Predicted Viral1362Open in IMG/M
3300013004|Ga0164293_10172734Not Available1585Open in IMG/M
3300013005|Ga0164292_10528167Not Available770Open in IMG/M
3300013005|Ga0164292_10633639Not Available688Open in IMG/M
(restricted) 3300013132|Ga0172372_10721173Not Available627Open in IMG/M
3300013372|Ga0177922_10380645Not Available556Open in IMG/M
3300013372|Ga0177922_10451691Not Available521Open in IMG/M
3300013372|Ga0177922_10482154Not Available1011Open in IMG/M
3300013372|Ga0177922_10525606Not Available976Open in IMG/M
3300016781|Ga0182063_1101933Not Available602Open in IMG/M
3300017736|Ga0181365_1021087All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1642Open in IMG/M
3300017774|Ga0181358_1054482Not Available1506Open in IMG/M
3300017774|Ga0181358_1228076Not Available595Open in IMG/M
3300017777|Ga0181357_1099734Not Available1102Open in IMG/M
3300017777|Ga0181357_1264800Not Available593Open in IMG/M
3300017778|Ga0181349_1253049Not Available587Open in IMG/M
3300017780|Ga0181346_1105992Not Available1088Open in IMG/M
3300017784|Ga0181348_1058574Not Available1563Open in IMG/M
3300020141|Ga0211732_1611647Not Available796Open in IMG/M
3300020151|Ga0211736_10597934Not Available2161Open in IMG/M
3300020159|Ga0211734_10362109Not Available924Open in IMG/M
3300020162|Ga0211735_10012262Not Available988Open in IMG/M
3300020172|Ga0211729_10661462Not Available1602Open in IMG/M
3300020172|Ga0211729_11094610Not Available1367Open in IMG/M
3300020191|Ga0181604_10276385Not Available774Open in IMG/M
3300020197|Ga0194128_10360899Not Available703Open in IMG/M
3300020205|Ga0211731_10374350Not Available1392Open in IMG/M
3300020527|Ga0208232_1010323Not Available1448Open in IMG/M
3300020529|Ga0208233_1007303All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1697Open in IMG/M
3300020537|Ga0208722_1043544All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage596Open in IMG/M
3300020550|Ga0208600_1031472Not Available829Open in IMG/M
3300021092|Ga0194122_10198944Not Available1056Open in IMG/M
3300021378|Ga0213861_10560100Not Available532Open in IMG/M
3300021960|Ga0222715_10550676Not Available604Open in IMG/M
3300021961|Ga0222714_10618710Not Available538Open in IMG/M
3300022179|Ga0181353_1129147Not Available598Open in IMG/M
3300022198|Ga0196905_1166057Not Available563Open in IMG/M
3300022407|Ga0181351_1225863Not Available603Open in IMG/M
3300025687|Ga0208019_1019850Not Available2653Open in IMG/M
3300027468|Ga0209247_1002859Not Available2221Open in IMG/M
3300027608|Ga0208974_1102989Not Available760Open in IMG/M
3300027608|Ga0208974_1128188Not Available658Open in IMG/M
3300027608|Ga0208974_1144557All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage607Open in IMG/M
3300027627|Ga0208942_1128563Not Available698Open in IMG/M
3300027659|Ga0208975_1072955Not Available1024Open in IMG/M
3300027736|Ga0209190_1162001Not Available958Open in IMG/M
3300027741|Ga0209085_1389228Not Available505Open in IMG/M
3300027744|Ga0209355_1026727Not Available2927Open in IMG/M
3300027744|Ga0209355_1317293Not Available585Open in IMG/M
3300027759|Ga0209296_1264343Not Available701Open in IMG/M
3300027763|Ga0209088_10069820Not Available1664Open in IMG/M
3300027772|Ga0209768_10389100Not Available558Open in IMG/M
3300027772|Ga0209768_10398874Not Available547Open in IMG/M
3300027777|Ga0209829_10037435All Organisms → Viruses → Predicted Viral2669Open in IMG/M
3300027782|Ga0209500_10051986Not Available2184Open in IMG/M
3300027782|Ga0209500_10402578Not Available550Open in IMG/M
3300027805|Ga0209229_10374777All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage620Open in IMG/M
3300027808|Ga0209354_10054371Not Available1615Open in IMG/M
3300027816|Ga0209990_10504297Not Available511Open in IMG/M
3300031784|Ga0315899_11758086Not Available507Open in IMG/M
3300031787|Ga0315900_10645282Not Available763Open in IMG/M
3300031787|Ga0315900_10889720Not Available600Open in IMG/M
3300031857|Ga0315909_10092163All Organisms → Viruses → Predicted Viral2639Open in IMG/M
3300031857|Ga0315909_10545498Not Available789Open in IMG/M
3300031857|Ga0315909_10917033Not Available539Open in IMG/M
3300031951|Ga0315904_11250458Not Available566Open in IMG/M
3300031963|Ga0315901_10227455All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1593Open in IMG/M
3300032050|Ga0315906_10611706All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage894Open in IMG/M
3300033993|Ga0334994_0112999Not Available1578Open in IMG/M
3300034023|Ga0335021_0686099Not Available500Open in IMG/M
3300034060|Ga0334983_0760444Not Available510Open in IMG/M
3300034062|Ga0334995_0197330Not Available1402Open in IMG/M
3300034062|Ga0334995_0723319Not Available557Open in IMG/M
3300034104|Ga0335031_0483573Not Available757Open in IMG/M
3300034106|Ga0335036_0606537All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage663Open in IMG/M
3300034284|Ga0335013_0242325Not Available1174Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake17.70%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake13.27%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater10.62%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic9.73%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater9.73%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater7.96%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake4.42%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater3.54%
River WaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water3.54%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton2.65%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater2.65%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous2.65%
Marine PlanktonEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton1.77%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater1.77%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh1.77%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.77%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment0.89%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.89%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.89%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.89%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water0.89%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2022920000Saline water microbial communities from Qinghai Lake, Tibetan Plateau - High mountain lake (unassembled)EnvironmentalOpen in IMG/M
3300001843Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM34, ROCA_DNA218_2.0um_bLM_C_2bEnvironmentalOpen in IMG/M
3300001849Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM26, ROCA_DNA190_2.0um_MCP-N_C_2bEnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300003393Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DDEnvironmentalOpen in IMG/M
3300005580Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRFEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005584Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRFEnvironmentalOpen in IMG/M
3300005585Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRFEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300008108Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NAEnvironmentalOpen in IMG/M
3300008116Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NAEnvironmentalOpen in IMG/M
3300008259Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NAEnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300009027Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MGEnvironmentalOpen in IMG/M
3300009056Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3EnvironmentalOpen in IMG/M
3300009154Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009158Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaGEnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009184Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaGEnvironmentalOpen in IMG/M
3300009185Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaGEnvironmentalOpen in IMG/M
3300009218Microbial communities of water from Amazon river, Brazil - RCM1EnvironmentalOpen in IMG/M
3300009233Microbial communities of water from Amazon river, Brazil - RCM9EnvironmentalOpen in IMG/M
3300009404Microbial communities of water from Amazon river, Brazil - RCM6EnvironmentalOpen in IMG/M
3300011010Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface IceEnvironmentalOpen in IMG/M
3300012346Freshwater microbial communities from Emily Creek, Ontario, Canada - S29EnvironmentalOpen in IMG/M
3300012663Freshwater microbial communities from Indian River, Ontario, Canada - S50EnvironmentalOpen in IMG/M
3300012665Freshwater microbial communities from Talbot River, Ontario, Canada - S11EnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300016781Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101409CT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020191Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020197Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65mEnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300020527Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020529Freshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020537Freshwater microbial communities from Lake Mendota, WI - 21SEP2011 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020550Freshwater microbial communities from Lake Mendota, WI - 08OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021092Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015021 Mahale Deep Cast 10mEnvironmentalOpen in IMG/M
3300021378Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131EnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300022179Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.NEnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300025687Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027468Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027627Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027736Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027741Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027744Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027763Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027772Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027777Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027782Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300027808Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027816Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300031784Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300033993Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037EnvironmentalOpen in IMG/M
3300034023Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090EnvironmentalOpen in IMG/M
3300034060Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034284Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
QL_na_122974402022920000Saline WaterMSNTVIALRQSGETSNTPSLGVLANGELALNFADSILYFKTAANTLGTILTATPGGLDTE
RCM34_110994523300001843Marine PlanktonMPNTTIALRSSGTTTSTPSLGVLANGELALNFADGIIYYKTSSNSLGSIRTTLPAGLTTEVQYNDAGSFGSNSNFTYNKTT
RCM26_118999813300001849Marine PlanktonMANTVIAIRSSGTTTNTPSLGVIANGELSLNYADGILYYKTSSN
JGI25908J49247_1004365733300003277Freshwater LakeMANTVIAIRSSGTAAATPSLGVIANGEIALNFADGIIYYKTS
JGI25908J49247_1004600533300003277Freshwater LakeMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYK
JGI25909J50240_105905313300003393Freshwater LakeMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRTTQPAGL
Ga0049083_1001928513300005580Freshwater LenticMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSN
Ga0049081_1004666113300005581Freshwater LenticMANTVIAIRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRTTQPAGLTTE
Ga0049081_1017320613300005581Freshwater LenticMANTVIALRSSGVTGNTPSLGVLANGELSLNFADGILYYKSSSNTLGS
Ga0049081_1029369813300005581Freshwater LenticMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRTTQPA
Ga0049082_1028387013300005584Freshwater LenticMANTVIAIRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGL
Ga0049084_1026076823300005585Freshwater LenticMANTVISLRSSGVSSNTPSLGVLANGELSLNFADGILYYKSAAN
Ga0099848_127235523300007541AqueousMPNTVIAIRQSGETGNTPSLGVLANGELAINYADGILYYKTSSNSLGSILTSTPG
Ga0114341_1042238423300008108Freshwater, PlanktonMANTTIALRQSGATGNTPSLGVLANGELSLNYADSILYFKTVSNTLGSIRTTQPAGLTTEIQFNDAGSFGSNTGLT
Ga0114350_114690123300008116Freshwater, PlanktonMANTTIALRQSGATGNTPSLGVLANGELSINYADSILYFK
Ga0114841_111472913300008259Freshwater, PlanktonMANTTIELRQSGSTGNTPSLGVLANGELAINRADGILYYKSSSNTLGSIRTTQPAGLTTEIQFNDAGSF
Ga0114876_104168633300008448Freshwater LakeMANTTIALRQSGATGNTPSLGVLANGELSLNYADSILYFKTVSNTLGSIR
Ga0114880_112665633300008450Freshwater LakeMANTVIAIRSSGVTGNTPSLGVLANGELSLNFADGILYYKSAANTLGS
Ga0114880_112720013300008450Freshwater LakeMANTTIELRQSGSTGNTPSLGVLANGELAINRADGILYYKSSSNTLGSI
Ga0102957_141139923300009027Pond WaterMANTTISIRSSGDTGVTPSLGVLANGELALNFADGILYYKTVSNTLGTITTTEPAGLNK
Ga0102860_104093413300009056EstuarineMANTVIALRSSGVTGNTPSLGVLANGELSLNFADGVLYYKSSSNTLGSIRTTAVSG
Ga0114963_1052275123300009154Freshwater LakeMANTVIAIRSSGVTGNTPSLGVLANGELSLNFADGVLFYKTSSNTLGSIRTTQVAGLNTEVQFNDSGSF
Ga0114968_1025949313300009155Freshwater LakeMANTVIAIRSSGTAAATPSLGVLANGELSINYADGIIYYKTSANALGSIRTTQPAGLTTEVQYNDA
Ga0114977_1044363313300009158Freshwater LakeMANTVIAVRSSGTVAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRTTQPAGLTTEVQYNDAGSFGANANFTFNK
Ga0114978_1006219733300009159Freshwater LakeMANTVIAIRSSGVTGNTPSLGVLANGELSLNFADGILYYKSSSNTLGSIRTTAVSGLT
Ga0114978_1015833713300009159Freshwater LakeMANTVISLRSSGATGNTPSLGVLANGELSLNFADGILYYKTAANALGSIRTTQVVGLNKEIQFNDAGS
Ga0114976_1019833333300009184Freshwater LakeMANTVIAIRSSGVTGNTPSLGVLANGELSLNFADGILYYKSSSNTLGSIRTTAVSGLTTEVQFND
Ga0114976_1064282523300009184Freshwater LakeMANTVISLRSSGATGNTPSLGVLANGELSLNFADGILYYKTAANALGSIRTTQVVGLNKE
Ga0114971_1026676313300009185Freshwater LakeMANTVIAIRSSGVTGNTPSLGVLANGELSLNFADGILYYKSSSNTL
Ga0103848_103795813300009218River WaterMANTVIAVRSSSATGNQPSLGVIANGELSLNFADGILYYKTSSNTLGQIRTTQVSGSNQQVQFNDSGS
Ga0103848_106359033300009218River WaterMPNTTIALRSSGTTTSTPSLGVLANGELAINFADGIIYYKTSSNSLGSIR
Ga0103856_1011288523300009233River WaterMANTVIAVRSSSATGNQPSLGVIANGELSLNFADGILYYKTSSNTLGQ
Ga0103853_101703213300009404River WaterMANTVIAVRSSSATGNQPSLGVIANGELSLNYADGILYYKTASNTLGQIRTTQVSGSNQQVQ
Ga0139557_103705713300011010FreshwaterMANTVIALRSSGVASNTPSLGVLANGELSLNFADGILYYKSSSNTLGS
Ga0139557_104396813300011010FreshwaterMANTVIAIRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRTTQPA
Ga0157141_104152723300012346FreshwaterMANTTIALRSSGTAAATPSLGVLANGELSINYADGIIYYKTASNTLGSIRTTQPAGLTTEIQFNDAGSFGSNSGLT
Ga0157203_105204013300012663FreshwaterMANTTIALRSSGTAAATPSLGVLANGELSINYADGIIYYKTASNTLGSIRTTQPAGLTTEIQFNDAGAFGSDAGLTYNKTTDVLT
Ga0157210_101393533300012665FreshwaterMANTVIAIRASGTAAATPSLGVIANGEIALNYADGIIYYKTSSNTLGSIRTTQPGGFTTEVQYNDAGCFGSNSNFTFNKT
Ga0164293_1017273433300013004FreshwaterMANTVIALRSSGVTGNTPSLGILANGELSLNFADGVLYYKTSSNTLGS
Ga0164292_1052816713300013005FreshwaterMANTVIALRQSGATGNTPSLGVLANGELSLNYADSILYFKTVSNTLGSIRTTQPAGLTTEIQFND
Ga0164292_1063363923300013005FreshwaterMANTVIALRSSGVTGNTPSLGILANGELSLNFADGVLYYKTSSNTLGSI
(restricted) Ga0172372_1072117323300013132FreshwaterMPNTVIAIRQSGGTGNTPSLGVLANGELALNYADGI
Ga0177922_1038064523300013372FreshwaterMANTVIALRSSGVTGNTPSLGVLANGELSLNFADGILYYKSSSNTLGSIR
Ga0177922_1045169123300013372FreshwaterMANTVISLRSSGVSSNTPSLGVLANGELSLNFADGIL
Ga0177922_1048215413300013372FreshwaterMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRTTQPAG
Ga0177922_1052560613300013372FreshwaterMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNT
Ga0182063_110193323300016781Salt MarshSGDTGATPSLGVLANGELAINYADGVLYYKTDANTLGLISQAQPSGLDTELQYNDGGSFRCECKLNI
Ga0181365_102108733300017736Freshwater LakeMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRTTQPAGLTTEVQF
Ga0181358_105448213300017774Freshwater LakeMANTVISLRSSGVASNTPSLGVLANGELSLNFADGIIYYKTAANALGSIRTTQASGLNKEIQ
Ga0181358_122807613300017774Freshwater LakeMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYY
Ga0181357_109973413300017777Freshwater LakeMANTVIALRQSGATGNTPSLGVLANGELSLNYADSILYFKTASNTLG
Ga0181357_126480023300017777Freshwater LakeMANTVISLRSSGVSSNTPSLGVLANGELSLNFADGILYYKSAANTLGSIRTT
Ga0181349_125304913300017778Freshwater LakeMANTTISLRSSGVASNTPSLGILANGELSLNFADGIIYYKTAANALGSIR
Ga0181346_110599233300017780Freshwater LakeMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRTTQPAGLTTEVQFNDA
Ga0181348_105857433300017784Freshwater LakeMANTVITVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRTTQPAGLT
Ga0211732_161164713300020141FreshwaterMANTVIAIRSSGVTGNTPSLGVLANGELSLNFADGILYYKTSS
Ga0211736_1059793433300020151FreshwaterMANTVIAIRSSGVSSNTPSLGVLANGELSLNFADGILYYKSSSNTLGSI
Ga0211734_1036210933300020159FreshwaterMANTVIAIRSSGVTGNTPSLGVLANGELSLNFADGIL
Ga0211735_1001226213300020162FreshwaterMANTVISLRSSGATGNTPSLGVLANGELSLNFADGILYYKSAANTLGSIRTTQVAGLNKEIQ
Ga0211729_1066146213300020172FreshwaterMANTVIAIRSSGVTGNTPSLGVLANGELSLNFADGILYYKSSSNTLGSIRTTAVSGLTTEVQFN
Ga0211729_1109461033300020172FreshwaterMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIKTTQPAGLTTEVQYNDAGSFGANANFTFNKT
Ga0181604_1027638513300020191Salt MarshMSNTVIAIRSSGVASNIPSLGVLANGEIALNYADGIIYYKTDANTLGQIKTTEPSGLDT
Ga0194128_1036089923300020197Freshwater LakeMANTTIELRQSSSTGQTPSLGVLANGELAINRADGILYYKS
Ga0211731_1037435033300020205FreshwaterMANTVIAIRSSGVASNTPSLGVLANGELSLNFADGILYYKSSSNTLGS
Ga0208232_101032313300020527FreshwaterMPNTVIAIRQSAGTGNTPSLGVLANGELALNYADGILYYKTTAN
Ga0208233_100730313300020529FreshwaterMPNTVIAIRQSAGTGNTPSLGVLANGELALNYADGILYYKTTANTLGSIRTTQPSGLNQ
Ga0208722_104354413300020537FreshwaterMPNTVIAIRQSGGTGNTPSLGVLANGELALNYADGILYYK
Ga0208600_103147233300020550FreshwaterMPNTVIAIRQSAGTGNTPSLGVLANGELALNYADGILYYKTTANTLGSIRTTQP
Ga0194122_1019894413300021092Freshwater LakeMANTTIELRQSSSTGQTPSLGVLANGELAINRADGILYYK
Ga0213861_1056010023300021378SeawaterMANTTISIRSSGDTGVTPSLGVLANGELALNFADGILYYKTASNTLGTITTTEPAGLNKEIQFNDSGSF
Ga0222715_1055067613300021960Estuarine WaterMSNTVIAIRSSGVASNTPSLGLLANGEIALNYADGIIYYKTDSNTL
Ga0222714_1061871013300021961Estuarine WaterMSNTVIAIRSSGVASNTPSLGLLANGEIALNYADGIIYYKTDSNTLGQIKTTEPSGLNKE
Ga0181353_112914723300022179Freshwater LakeMPNTVISIRSSGQTGNIPSLGVVANGELSLNYADGILYYKTAI
Ga0196905_116605713300022198AqueousMPNTVIVIRQSGETGNTPSLGVLANGELAINYADGILYYKTSSNTLGTILTSTPGGLD
Ga0181351_122586313300022407Freshwater LakeMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTS
Ga0208019_101985013300025687AqueousMANTTISIRSSGDTGVTPSLGVLANGELALNFADGIL
Ga0209247_100285913300027468Freshwater LakeMANTVIALRSSGVSGNTPSLGVLANGELSLNFADGIV
Ga0208974_110298913300027608Freshwater LenticMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGS
Ga0208974_112818823300027608Freshwater LenticMANTVIAIRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRTTQPAGLTTEVQF
Ga0208974_114455713300027608Freshwater LenticMPNTVIAIRQSGETGNTPSLGVLANGELALNYADGILYYKTTSNTLGSIRTTQPSG
Ga0208942_112856313300027627Freshwater LenticMANTVIAIRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSS
Ga0208975_107295513300027659Freshwater LenticMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRT
Ga0209190_116200133300027736Freshwater LakeMANTVIALRSSGVASNTPSLGVLANGELSINFADGILYYKSS
Ga0209085_138922813300027741Freshwater LakeMANTVIALRSSGVTGNTPSLGVLANGELSLNFADGILYYKSSSNTLG
Ga0209355_102672713300027744Freshwater LakeMANTVISLRSSGVSSNTPSLGVLANGELSLNFADGILYYKSAANALGSIR
Ga0209355_131729323300027744Freshwater LakeMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRTTQPAGLTTEVQFND
Ga0209296_126434313300027759Freshwater LakeMANTVIALRSSGVASNTPSLGVLANGELSLNFADGILYY
Ga0209088_1006982013300027763Freshwater LakeMANTTISLRSSGVASNTPSLGILANGELSLNFADGIIYYKTAANALGSIRTTQTSGLN
Ga0209768_1038910023300027772Freshwater LakeMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGLIRTTQPAGLTTEVQF
Ga0209768_1039887413300027772Freshwater LakeMANTVISLRSSGISSNTPSLGVLANGELSLNFADGILYYKSAANALGSIRTTQVA
Ga0209829_1003743513300027777Freshwater LakeMANTVIAIRSSGVTGNTPSLGVLANGELSLNFADGILYYKSSSNTLGSIRTTAVSGLTT
Ga0209500_1005198633300027782Freshwater LakeMANTVIAIRSSGVTGNTPSLGVLANGELSLNFADGILYYKSSSNTLGSI
Ga0209500_1040257813300027782Freshwater LakeMANTVISLRSSGVTSNTPSLGVLANGELSLNFADGILYYKSAANTLGSIRTTQVAGLNKEIQFNDS
Ga0209229_1037477713300027805Freshwater And SedimentMPNTVIAIRQSGGTGNTPSLGVLANGELALNYADGILYYKTT
Ga0209354_1005437133300027808Freshwater LakeMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRTTQPAGLTREVQF
Ga0209990_1050429713300027816Freshwater LakeMANTTIELRQSGSTGNTPSLGVLANGELAINRADGILYYKSSSNTLGSIRTTQPAGLTKE
Ga0315899_1175808623300031784FreshwaterMANTVIAIRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRTTQPAGL
Ga0315900_1064528213300031787FreshwaterMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSS
Ga0315900_1088972023300031787FreshwaterMANTVIALRSSGVASNTPSLGVLANGELSLNFADGVLYYKSSSNTLGSIRTTAVSGLTTEVQFNDAGV
Ga0315909_1009216353300031857FreshwaterMANTTIELRQSGSTGNTPSLGVLANGELAINRADGILYYKSS
Ga0315909_1054549823300031857FreshwaterMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIR
Ga0315909_1091703313300031857FreshwaterMANTVIALRSSGVTGNTPSLGVLANGELSLNFADGILYYKSSSN
Ga0315904_1125045823300031951FreshwaterMANTVIAVRSSGTAAATPSLGVIANGEIALNFADGIIYYKTSSNTLGSIRTT
Ga0315901_1022745533300031963FreshwaterMPNTVIAIRQSGGTGNTPSLGVLANGELALNYADGILYYKT
Ga0315906_1061170633300032050FreshwaterMPNTVIAIRQSGGTGNTPSLGVLANGELALNYADGILYYKTTANTLGSIRTTQPSG
Ga0334994_0112999_1424_15763300033993FreshwaterMPNTVIAIRQSAGTGNTPSLGVLANGELALNYADGILYYKTTSNTLGSIRT
Ga0335021_0686099_1_1383300034023FreshwaterMPNTVIAIRQSGETGNTPSLGVLANGELALNYADGILYYKTTSNTL
Ga0334983_0760444_386_5083300034060FreshwaterMANTVIALRSSGVASNTPSLGVLANGELSLNFADGILYYKS
Ga0334995_0197330_1285_14013300034062FreshwaterMPNTVIAIRQSGGTGNTPSLGVLANGELALNYADGILYY
Ga0334995_0723319_1_1293300034062FreshwaterMANTVIALRQSGATGNTPSLGVLANGELSLNYADSILYFKTVS
Ga0335031_0483573_3_2273300034104FreshwaterMANTVIAIRSSGTAAATPSLGVIANGELSLNYADGILYYKTTSNTLGSIRTTQPAGLTTEIQFNDAGTFGSDSGL
Ga0335036_0606537_490_6633300034106FreshwaterMPNTVIAIRQSAGTGNTPSLGVLANGELALNYADGILYYKTTANTLGSIRTTQPSGLN
Ga0335013_0242325_1024_11733300034284FreshwaterMANTVIALRSSGVTGNTPSLGILANGELSLNFADGVLYYKSSSNTLGSIR


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.