Metagenome / Metatranscriptome Family F081908

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081908
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	47 residues
Representative Sequence	LLGVLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKEGDEPPTEEPR
Number of Associated Samples	79
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	85.96 %
% of genes near scaffold ends (potentially truncated)	24.56 %
% of genes from short scaffolds (< 2000 bps)	78.07 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.404 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (18.421 % of family members)
Environment Ontology (ENVO)	Unclassified (23.684 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (30.702 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.21% β-sheet: 0.00% Coil/Unstructured: 65.79%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF04744	Monooxygenase_B	58.77
PF09339	HTH_IclR	7.89
PF02461	AMO	1.75
PF04896	AmoC	1.75
PF01522	Polysacc_deac_1	0.88
PF08309	LVIVD	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.88
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.40 %
All Organisms	root	All Organisms	38.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.40 %
cellular organisms	root	All Organisms → cellular organisms	38.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.40 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.40 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	36.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.40 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	35.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.40 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	32.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.40 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	3.51 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	3.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.40 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	3.51 %
Carbonactinosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.40 %
unclassified Nocardioidaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae	3.51 %
Carbonactinospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae → Carbonactinospora	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.40 %
Nocardioidaceae bacterium Broad-1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium Broad-1	2.63 %
Carbonactinospora thermoautotrophica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae → Carbonactinospora → Carbonactinospora thermoautotrophica	0.88 %
Nocardioidaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	0.88 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000443\|F12B_10134410	Not Available	806	Open in IMG/M
3300000550\|F24TB_10346438	Not Available	660	Open in IMG/M
3300000559\|F14TC_101368465	Not Available	555	Open in IMG/M
3300000787\|JGI11643J11755_11475933	Not Available	675	Open in IMG/M
3300001431\|F14TB_100399777	Not Available	671	Open in IMG/M
3300002899\|JGIcombinedJ43975_10070859	Not Available	609	Open in IMG/M
3300003203\|JGI25406J46586_10015059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium Broad-1	3270	Open in IMG/M
3300003203\|JGI25406J46586_10050173	Not Available	1403	Open in IMG/M
3300003203\|JGI25406J46586_10178141	Not Available	620	Open in IMG/M
3300004016\|Ga0058689_10134510	Not Available	556	Open in IMG/M
3300005562\|Ga0058697_10016356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2538	Open in IMG/M
3300005562\|Ga0058697_10183731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	936	Open in IMG/M
3300005562\|Ga0058697_10254688	Not Available	819	Open in IMG/M
3300005562\|Ga0058697_10763206	Not Available	520	Open in IMG/M
3300005937\|Ga0081455_10033783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium Broad-1	4591	Open in IMG/M
3300005981\|Ga0081538_10274579	Not Available	629	Open in IMG/M
3300005983\|Ga0081540_1010734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium Broad-1	6169	Open in IMG/M
3300005985\|Ga0081539_10038388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2839	Open in IMG/M
3300006844\|Ga0075428_100147484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2557	Open in IMG/M
3300006844\|Ga0075428_101735270	Not Available	651	Open in IMG/M
3300006852\|Ga0075433_10108549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2461	Open in IMG/M
3300006880\|Ga0075429_100358129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1277	Open in IMG/M
3300007790\|Ga0105679_10994981	Not Available	1797	Open in IMG/M
3300009094\|Ga0111539_10065304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4301	Open in IMG/M
3300009100\|Ga0075418_13061839	Not Available	509	Open in IMG/M
3300009147\|Ga0114129_10220798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2557	Open in IMG/M
3300009789\|Ga0126307_10024897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4560	Open in IMG/M
3300009789\|Ga0126307_10053056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3167	Open in IMG/M
3300009789\|Ga0126307_10247137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1434	Open in IMG/M
3300009789\|Ga0126307_11194765	Not Available	616	Open in IMG/M
3300009840\|Ga0126313_10150082	Not Available	1760	Open in IMG/M
3300009840\|Ga0126313_10212278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1490	Open in IMG/M
3300009840\|Ga0126313_10782951	Not Available	775	Open in IMG/M
3300010036\|Ga0126305_10006909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5522	Open in IMG/M
3300010037\|Ga0126304_10365419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	961	Open in IMG/M
3300010038\|Ga0126315_10066127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2001	Open in IMG/M
3300010038\|Ga0126315_10099694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1664	Open in IMG/M
3300010038\|Ga0126315_11112753	Not Available	534	Open in IMG/M
3300010040\|Ga0126308_10156396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1443	Open in IMG/M
3300010041\|Ga0126312_10116230	Not Available	1839	Open in IMG/M
3300010041\|Ga0126312_10176318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1490	Open in IMG/M
3300010042\|Ga0126314_10117703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1824	Open in IMG/M
3300010042\|Ga0126314_10799663	Not Available	694	Open in IMG/M
3300010044\|Ga0126310_10289404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1123	Open in IMG/M
3300010044\|Ga0126310_10368619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1013	Open in IMG/M
3300010044\|Ga0126310_10983147	Not Available	663	Open in IMG/M
3300010137\|Ga0126323_1168844	Not Available	612	Open in IMG/M
3300010145\|Ga0126321_1231396	Not Available	1331	Open in IMG/M
3300010145\|Ga0126321_1470867	Not Available	1017	Open in IMG/M
3300010166\|Ga0126306_10187588	Not Available	1556	Open in IMG/M
3300010999\|Ga0138505_100001859	Not Available	1868	Open in IMG/M
3300012206\|Ga0137380_10004725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	12042	Open in IMG/M
3300014487\|Ga0182000_10168014	Not Available	811	Open in IMG/M
3300014487\|Ga0182000_10173154	Not Available	803	Open in IMG/M
3300014487\|Ga0182000_10235472	Not Available	725	Open in IMG/M
3300014487\|Ga0182000_10248615	Not Available	712	Open in IMG/M
3300014488\|Ga0182001_10090248	Not Available	927	Open in IMG/M
3300014488\|Ga0182001_10241872	Not Available	691	Open in IMG/M
3300014488\|Ga0182001_10625155	Not Available	522	Open in IMG/M
3300017997\|Ga0184610_1052130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1212	Open in IMG/M
3300018000\|Ga0184604_10161003	Not Available	747	Open in IMG/M
3300018027\|Ga0184605_10296241	Not Available	733	Open in IMG/M
3300018027\|Ga0184605_10458642	Not Available	560	Open in IMG/M
3300018465\|Ga0190269_10417001	Not Available	837	Open in IMG/M
3300018466\|Ga0190268_10145052	Not Available	1201	Open in IMG/M
3300019254\|Ga0184641_1421540	Not Available	1144	Open in IMG/M
3300019259\|Ga0184646_1111834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	885	Open in IMG/M
3300021078\|Ga0210381_10130594	Not Available	839	Open in IMG/M
3300021078\|Ga0210381_10186576	Not Available	718	Open in IMG/M
3300021951\|Ga0222624_1039369	Not Available	1226	Open in IMG/M
3300021951\|Ga0222624_1048274	All Organisms → cellular organisms → Bacteria	3206	Open in IMG/M
3300022195\|Ga0222625_1271661	Not Available	627	Open in IMG/M
3300022756\|Ga0222622_10285560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1130	Open in IMG/M
3300027750\|Ga0209461_10005225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2140	Open in IMG/M
3300027750\|Ga0209461_10011346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1515	Open in IMG/M
3300027750\|Ga0209461_10105961	Not Available	643	Open in IMG/M
3300027750\|Ga0209461_10128102	Not Available	600	Open in IMG/M
3300027873\|Ga0209814_10003593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae → Carbonactinospora → Carbonactinospora thermoautotrophica	5792	Open in IMG/M
3300027873\|Ga0209814_10261822	Not Available	751	Open in IMG/M
3300027907\|Ga0207428_10786590	Not Available	676	Open in IMG/M
3300028589\|Ga0247818_10088368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2000	Open in IMG/M
3300028704\|Ga0307321_1063241	Not Available	715	Open in IMG/M
3300028744\|Ga0307318_10013629	Not Available	2601	Open in IMG/M
3300028878\|Ga0307278_10000197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	30898	Open in IMG/M
3300028881\|Ga0307277_10086954	Not Available	1314	Open in IMG/M
3300030496\|Ga0268240_10096890	Not Available	687	Open in IMG/M
3300030510\|Ga0268243_1000136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12470	Open in IMG/M
3300030511\|Ga0268241_10109293	Not Available	648	Open in IMG/M
3300030516\|Ga0268255_10062119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1175	Open in IMG/M
3300030903\|Ga0308206_1069847	Not Available	737	Open in IMG/M
3300030993\|Ga0308190_1005105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1682	Open in IMG/M
3300031058\|Ga0308189_10050016	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1157	Open in IMG/M
3300031098\|Ga0308191_1033981	Not Available	552	Open in IMG/M
3300031114\|Ga0308187_10003982	All Organisms → cellular organisms → Bacteria	2465	Open in IMG/M
3300031114\|Ga0308187_10004041	Not Available	2455	Open in IMG/M
3300031114\|Ga0308187_10143465	Not Available	789	Open in IMG/M
3300031548\|Ga0307408_100394715	Not Available	1186	Open in IMG/M
3300031548\|Ga0307408_100790939	Not Available	860	Open in IMG/M
3300031548\|Ga0307408_102033562	Not Available	553	Open in IMG/M
3300031824\|Ga0307413_10557888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	930	Open in IMG/M
3300031901\|Ga0307406_10410420	Not Available	1076	Open in IMG/M
3300031903\|Ga0307407_10151036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1509	Open in IMG/M
3300031911\|Ga0307412_11507711	Not Available	611	Open in IMG/M
3300031995\|Ga0307409_100916834	Not Available	891	Open in IMG/M
3300032002\|Ga0307416_100680321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1116	Open in IMG/M
3300032005\|Ga0307411_10406954	Not Available	1126	Open in IMG/M
3300032005\|Ga0307411_12101853	Not Available	528	Open in IMG/M
3300032080\|Ga0326721_10194766	Not Available	1065	Open in IMG/M
3300032126\|Ga0307415_100014927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4584	Open in IMG/M
3300032159\|Ga0268251_10358961	Not Available	620	Open in IMG/M
3300034131\|Ga0334911_022711	Not Available	868	Open in IMG/M
3300034137\|Ga0334943_074811	Not Available	646	Open in IMG/M
3300034172\|Ga0334913_001418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9052	Open in IMG/M
3300034377\|Ga0334931_098340	Not Available	683	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.91%
Host-Associated	Host-Associated	35.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.75%
Plants	Host-Associated → Plants	35.09%
Aquatic	Environmental → Aquatic	13.16%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.30%
Freshwater	Environmental → Aquatic → Freshwater	8.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.26%
Phylloplane	Host-Associated → Plants → Phylloplane	5.26%
Sediment	Environmental → Aquatic → Sediment	4.39%
Phyllosphere	Host-Associated → Plants → Phyllosphere	4.39%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.88%
Roots	Host-Associated → Plants → Roots	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.30%
Sediment	Environmental → Aquatic → Freshwater → Sediment	6.14%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.26%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	5.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.39%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	4.39%
Loam	Environmental → Terrestrial → Soil → Loam	3.51%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.63%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	0.88%
Sand	Environmental → Terrestrial → Soil → Sand	0.88%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.88%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.30%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	6.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.26%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	5.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.39%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	4.39%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.51%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.63%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	2.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.88%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	0.88%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.88%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	18.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	10.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.77%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	6.14%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	5.26%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	5.26%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	4.39%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.51%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.51%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.63%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	2.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.88%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	0.88%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.88%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.88%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010137	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031098	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_186 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034131	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 7HMS	Environmental	Open in IMG/M
3300034137	Biocrust microbial communities from Mojave Desert, California, United States - 39SMC	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034377	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F12B_101344102	3300000443	Soil	LLALXXXXGGLDETAIIWVPLVLIAGLWWIMRGGDPKEGDEPASR*
F24TB_103464382	3300000550	Soil	MLLGVLAHYGGLDETAVIWVPLVMVGGLWWILRGGDPKDEEQQPPREETR*
F14TC_1013684652	3300000559	Soil	AHYGGLDETAVIWVPLVMVGGLWWILRGGDPKDEEQQPPREETR*
JGI11643J11755_114759332	3300000787	Soil	VLAHYGGLDETAIIWVPLVMIGGLWLILRGGDPKDEEQQPPREETR*
F14TB_1003997772	3300001431	Soil	LPGALALLAHYGGLDETAIIWVPLVLIAGLWWIMRGGDPKEGDEPPPEETR*
JGIcombinedJ43975_100708592	3300002899	Soil	LLAVLAHYGGLDETAVIWVPLVMIAGLWWILRGGDPKDGDEPPPEETR*
JGI25406J46586_100150593	3300003203	Tabebuia Heterophylla Rhizosphere	VLAPLAHYGGLDETAVIWVPLVLVAGLWWIMRGGDPKEGDEPPTEDTR*
JGI25406J46586_100501732	3300003203	Tabebuia Heterophylla Rhizosphere	LPALLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKEGDEPPEETT*
JGI25406J46586_101781412	3300003203	Tabebuia Heterophylla Rhizosphere	LSGVLALLAHYGGLDETAIIWVPLVLIGGLWWIMRGGDPKEGDEPPEEST*
Ga0058689_101345102	3300004016	Agave	VLAHYGGLDETAVIWVPLVMIGGLWWLLRGGDPKQEDEPPREETR*
Ga0058697_100163562	3300005562	Agave	MLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPKEETR*
Ga0058697_101837312	3300005562	Agave	VLAHYGGLDETAIIWVPLVMIGGLWWLLRGGDPKQEDEPPREETR*
Ga0058697_102546882	3300005562	Agave	LLGVLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPQEESR*
Ga0058697_107632062	3300005562	Agave	LLWVLAHYGGLDETAVIWVPLVMIGGLWWILRGGDPKEGDEPPPEESR*
Ga0081455_100337835	3300005937	Tabebuia Heterophylla Rhizosphere	LLGVVLGHYGGLDETAVIWVPLVLSGGLWWILRGGDPKDKDDEESSREETR*
Ga0081538_102745792	3300005981	Tabebuia Heterophylla Rhizosphere	LLGVLAHYGGLDETAVIWVPLVMIGGLWWILRGGDPKDEEQPPPREESR*
Ga0081540_10107346	3300005983	Tabebuia Heterophylla Rhizosphere	MNRLLALLAHYGGLDETAIIWVPLILVGGLWWIMRGGDPKEGDEPPEERT*
Ga0081539_100383882	3300005985	Tabebuia Heterophylla Rhizosphere	LLALLAHYGGVDETAIIWVPLVLIAGLWWIMRGGDPKEGDEPPPEEMK*
Ga0075428_1001474842	3300006844	Populus Rhizosphere	LLGVLAHYGGLDETAIIWVPLVMIGGLWLILRGGDPKDEEQQPPREETR*
Ga0075428_1017352702	3300006844	Populus Rhizosphere	VLGVLAHYGGLDETAIIWVPLVMVGGLWWLLRGGDPKDDEPPREEPQ*
Ga0075433_101085495	3300006852	Populus Rhizosphere	VLAHYGGLDETAIIWVPLVMVGGLWWLLRGGDPKDDEPPREEPQ*
Ga0075429_1003581292	3300006880	Populus Rhizosphere	LLRVVLGHYGGLDETAVIWVPLVLSGGLWWILRGGDPKDKDDEESSREETR*
Ga0105679_109949812	3300007790	Soil	LPAALALLAHYGGLDETAVIWVPLIMIGGLWWILRGGDPKEGDEPPPEETR*
Ga0111539_100653043	3300009094	Populus Rhizosphere	VLGHYGGLDETAVIWVPLVLSGGLWWILRGGDPKDKDDEESSREETR*
Ga0075418_130618391	3300009100	Populus Rhizosphere	LLGVLGHYGGLDETAIIWVPLVMVAGLWWILRGGDPKEDEESSEDEES
Ga0114129_102207982	3300009147	Populus Rhizosphere	LLLGVLAHYGGLDETAIIWVPLVMIGGLWLILRGGDPKDEEQQPPREETR*
Ga0126307_100248976	3300009789	Serpentine Soil	LLALLAHYGGLDETAIIWVPLVLIAGLWWIMRGGDPKEGDEPPREETR*
Ga0126307_100530566	3300009789	Serpentine Soil	LLGVLGHYGGLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSQEETR*
Ga0126307_102471372	3300009789	Serpentine Soil	LPGALAVLAHYGGLDETAVIWVPIVMIGGLWWILRGGDPKEGDEQPPPEETR*
Ga0126307_111947651	3300009789	Serpentine Soil	LLGVLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPQEEPR*
Ga0126313_101500822	3300009840	Serpentine Soil	LLGVLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPQKESR*
Ga0126313_102122781	3300009840	Serpentine Soil	VLALLAHYGGLDETAIIWVPLVLIAGLWWIMRGGDPKEGDESPPEDTR*
Ga0126313_107829512	3300009840	Serpentine Soil	VLALLAHYGGLDETAVIWVPLVMIGGLWWILRGGDPKDGDEPPPEETR*
Ga0126305_100069094	3300010036	Serpentine Soil	LLGVLGHYGGLDETAIIWVPLVMVAGLWWILRGGDPKEDEESSQEETR*
Ga0126304_103654192	3300010037	Serpentine Soil	LPGALAVLAHYGGLDETAVIWVPIVMIGGLWWILRGGDPKEGDEPPEETT*
Ga0126315_100661275	3300010038	Serpentine Soil	VPGVLALLAHYGGVDETAVIWVPLVLIGGLWWIMRGGDPKEGDESPPEDTR*
Ga0126315_100996943	3300010038	Serpentine Soil	LLGVLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPQ
Ga0126315_111127532	3300010038	Serpentine Soil	DETAIIWVPLVMIGGLWWILRGGDPKDEEPPQEEPR*
Ga0126308_101563962	3300010040	Serpentine Soil	LLGVLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPREESR*
Ga0126312_101162302	3300010041	Serpentine Soil	LLGVLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPQEESK*
Ga0126312_101763183	3300010041	Serpentine Soil	VPGVLALLAHYGGVDETAVIWVPLVLIGGLWWIMRGGDPKEGDEPPPEDTR*
Ga0126314_101177035	3300010042	Serpentine Soil	GLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPQEEPR*
Ga0126314_107996632	3300010042	Serpentine Soil	VPGVLALLAHYGGVDETAVIWVPLVLIGGLWWIMRGGDPKEGDEPPREDTR*
Ga0126310_102894042	3300010044	Serpentine Soil	LLALLAHYGGLDETAIIWVPLVLIAGLWWIMRGGDPKEGDEPPPEETR*
Ga0126310_103686192	3300010044	Serpentine Soil	LLGVLGHYGGLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSQEETK*
Ga0126310_109831472	3300010044	Serpentine Soil	LALLAHYGGVDETAVIWVPLVLIGGLWWIMRGGDPKEGDEPP
Ga0126323_11688442	3300010137	Soil	LLALLAHYGGVDETAIIWVPLVLIAGLWWIMRGGDPKEGDEPPPEEMR*
Ga0126321_12313964	3300010145	Soil	VFVLGILAHYGGIDETAIVWVPLVMVGGLWWILRGGDPKDDEPPREELQ*
Ga0126321_14708672	3300010145	Soil	LLGVLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPQEEPQEESR*
Ga0126306_101875884	3300010166	Serpentine Soil	VLALLAHYGGLDETAVIWVPLVLIGGLWWIMRGGDPKEGDEPPEETT*
Ga0138505_1000018592	3300010999	Soil	LLGVLAHDGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPQEESR*
Ga0137380_100047258	3300012206	Vadose Zone Soil	VLGILAHYGGIDETAIIWVPVVLAGGLWWLLRGGDPKADEPPREEMEPGEMEKR*
Ga0182000_101680142	3300014487	Soil	VLVLGVLAHYGGIDETAIIWVPLVMVGGLWWLLRGGDPKDEEPPREELP*
Ga0182000_101731543	3300014487	Soil	LLGVLAHYGGLDETAIIWVPLVMVGGLWWILRGGDPNEDEESSQEETR*
Ga0182000_102354722	3300014487	Soil	VLVLGILAHYGGIDETAVVWVPLVMVGGLWWILRGGDPKDDEPPREELR*
Ga0182000_102486152	3300014487	Soil	LLGVLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPREESPREESR*
Ga0182001_100902484	3300014488	Soil	LLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKEGDEQPPEETT*
Ga0182001_102418722	3300014488	Soil	LPGALAVLAHYGGLDETAVIWVPLIMIGGLWWILRGGDPKEGDEPPPEETR*
Ga0182001_106251551	3300014488	Soil	RPDHPAEGLRNVFVLGILAHYGGIDETAVVWVPLVMVGGLWWILRGGDPKDDEPPREELR
Ga0184610_10521301	3300017997	Groundwater Sediment	LLGVLGHYGGLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSREETK
Ga0184604_101610032	3300018000	Groundwater Sediment	LLGVLAHYGGLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSQEETR
Ga0184605_102962412	3300018027	Groundwater Sediment	LLGVLGHYGGLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSQEETR
Ga0184605_104586422	3300018027	Groundwater Sediment	VLVAGVLAHMGGIDETAIIWVPLVMVGGLWWLLRGGDPKEDEPPREELP
Ga0190269_104170012	3300018465	Soil	LLGALGHYGGLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSQEETR
Ga0190268_101450522	3300018466	Soil	LLGVLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPQEESR
Ga0184641_14215402	3300019254	Groundwater Sediment	VLVAGVLAHMGGIDETAIIWVPLVMVGGLWWLLRGGDPKEDEPPGEELP
Ga0184646_11118342	3300019259	Groundwater Sediment	LLGVLAHYGGLDETAIIWVPLVMVGGLWWILRGGDPKEDEESS
Ga0210381_101305944	3300021078	Groundwater Sediment	GLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSQEETR
Ga0210381_101865761	3300021078	Groundwater Sediment	DETAIIWVPLVMVGGLWWILRGGDPKEDEESSREETK
Ga0222624_10393692	3300021951	Groundwater Sediment	LLGVLAHYGGLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSREE
Ga0222624_10482744	3300021951	Groundwater Sediment	LLGVLGHYGGLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSREE
Ga0222625_12716613	3300022195	Groundwater Sediment	GLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSREETK
Ga0222622_102855601	3300022756	Groundwater Sediment	LLGVLAHYGGLDETAIIWVPLVMVGGLWWILRGGDPKED
Ga0209461_100052251	3300027750	Agave	LLGVLAHYGGLDETAVIWVPLVMIGGLWWLLRGGDPKQEDEPPREETR
Ga0209461_100113463	3300027750	Agave	VLVLGVLAHYGGIDETAIIWVPLVMVGGLWWLLRGGDPKDEEPPREELP
Ga0209461_101059613	3300027750	Agave	EGQGPLLGVLAHYGGLDETAVIWVPLVMIGGLWWLLRGGDPTQEDEPPREETR
Ga0209461_101281022	3300027750	Agave	VLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPKEETR
Ga0209814_100035935	3300027873	Populus Rhizosphere	VLAHYGGLDETAIIWVPLVMIGGLWLILRGGDPKDEEQQPPREETR
Ga0209814_102618222	3300027873	Populus Rhizosphere	VLAHYGGLDETAIIWVPLVMVGGLWWLLRGGDPKDDEPPREEPQ
Ga0207428_107865901	3300027907	Populus Rhizosphere	LLGVVLGHYGGLDETAVIWVPLVLSGGLWWILRGGDPKDKDDEESSREETR
Ga0247818_100883685	3300028589	Soil	DGLLGVLGHYGGLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSQEETR
Ga0307321_10632412	3300028704	Soil	LLGVLAHYGGLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSREETK
Ga0307318_100136293	3300028744	Soil	VLVAGVLAHMGGIDETAIIWVPLVMVGGLWWLLRGGDPKEDEPPGKELP
Ga0307278_1000019715	3300028878	Soil	VLVLGVLAHYGGIDETAIIWVPLVMVGGLWWLLRGGDPKEDEPPQEEPR
Ga0307277_100869542	3300028881	Soil	LLALLAHYGGLDETAIIWVPLVLIAGLWWIMRGGDPKEGDEPPPEETR
Ga0268240_100968902	3300030496	Soil	LPALLAHYGGLDETAIIWVPLVLIGGLWWIMRGGDPKEGDEPPEETT
Ga0268243_100013611	3300030510	Soil	VLAHYGGLDETAVIWVPLVMIGGLWWILRGGDPKEGDEPPPEESR
Ga0268241_101092932	3300030511	Soil	LLGVLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKEGDEPPTEEPR
Ga0268255_100621191	3300030516	Agave	LLGVLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEQEQPQPPREETR
Ga0308206_10698472	3300030903	Soil	LLGVLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPHEESR
Ga0308190_10051052	3300030993	Soil	MGGIDETAIIWVPLVMVGGLWWLLRGGDPKEDEPPREELP
Ga0308189_100500162	3300031058	Soil	MGGIDETAIIWVPLVMVGGLWWLLRGGDPKEDEPPGKELP
Ga0308191_10339812	3300031098	Soil	VLVAGVLAHMGGIDETAIIWVPLVMVGGLWWILRGGDPKEDEESSREETK
Ga0308187_100039821	3300031114	Soil	LLGVLGHYGGLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSQEE
Ga0308187_100040414	3300031114	Soil	LLGVLAHYGGLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSQEE
Ga0308187_101434651	3300031114	Soil	HYGGLDETAIIWVPLVMVGGLWWILRGGDPKEDEESSREETK
Ga0307408_1003947152	3300031548	Rhizosphere	VLAVLAHYGGLDETAVIWVPLVMIAGLWWILRGGDPKDGDEPPPEETR
Ga0307408_1007909392	3300031548	Rhizosphere	LLGVLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPQEEPR
Ga0307408_1020335621	3300031548	Rhizosphere	LPAALAVLAHYGGLDETAVIWVPIVMIGGLWWILRGGDPKEGDEPPTKETR
Ga0307413_105578881	3300031824	Rhizosphere	LPAALAVLAHYGGLDETAVIWVPIVMISGLWWILRGGDPKEGDEPPTKETR
Ga0307406_104104202	3300031901	Rhizosphere	VLALLAHYGGLDETAVIWVPLVMIGGLWWILRGGDPKDGDEPPPEESR
Ga0307407_101510362	3300031903	Rhizosphere	LPAVLAVLAHYGGLDETAVIWVPLVMIAGLWWILRGGDPKDGDEPPPEETR
Ga0307412_115077113	3300031911	Rhizosphere	VLALLAHYGGVDETAVIWVPLVLIGGLWWIMRGGDPKEGDEPPPEDTR
Ga0307409_1009168343	3300031995	Rhizosphere	VLALLAHYGGVDETAIIWVPLVLIGGLWWIMRGGDPKEGDEPPPEDTR
Ga0307416_1006803212	3300032002	Rhizosphere	LPGVLALLAHYGGVDETAIIWVPLVLIGGLWWIMRGGDPKEGDEPPPEDTR
Ga0307411_104069544	3300032005	Rhizosphere	VLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPQEESR
Ga0307411_121018531	3300032005	Rhizosphere	LLLGVLAHYGGLDETAIIWVPLVMIGGLWWLLRGGDPSKDEEPPREDTR
Ga0326721_101947662	3300032080	Soil	LLALLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKEGDEPPPEESR
Ga0307415_1000149279	3300032126	Rhizosphere	VPAVLAVLAHYGGLDETAVIWVPLVMIAGLWWILRGGDPKDGDEPPPEETR
Ga0268251_103589611	3300032159	Agave	RGSLLGMLAHYGGLDETAIIWVPLVMIGGLWWILRGGDPKDEEPPKEETR
Ga0334911_022711_454_600	3300034131	Sub-Biocrust Soil	VPALLAHYGGLDETAVIWVPLIMIGGLWWILRGGDPKEGDQPPPEETR
Ga0334943_074811_2_121	3300034137	Biocrust	GLDETAVIWVPIIMIGGLWWILRGGDPKEGDEPPPEETR
Ga0334913_001418_5426_5572	3300034172	Sub-Biocrust Soil	LLCVLAHYGGLDETAIIWVPLVMIGGLWWLLRGGDPKQEDEPPREETR
Ga0334931_098340_545_682	3300034377	Sub-Biocrust Soil	VPALLAHYGGLDETAVIWVPIIMIGGLWWILRGGDPKEGDEPPPEE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081908

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences