Metagenome / Metatranscriptome Family F081711

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081711
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	62 residues
Representative Sequence	MIPRPLNMEQLVRCLERRYGEVDLFPDEGYTKLRVAGVALTFLEAERLCLGETTLDDLKKAAA
Number of Associated Samples	87
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	55.26 %
% of genes near scaffold ends (potentially truncated)	17.54 %
% of genes from short scaffolds (< 2000 bps)	79.82 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.772 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (17.544 % of family members)
Environment Ontology (ENVO)	Unclassified (19.298 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (36.842 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.77% β-sheet: 16.48% Coil/Unstructured: 52.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF07963	N_methyl	19.30
PF13544	Obsolete Pfam Family	6.14
PF06418	CTP_synth_N	4.39
PF00793	DAHP_synth_1	1.75
PF02348	CTP_transf_3	1.75
PF00482	T2SSF	1.75
PF00294	PfkB	0.88
PF04255	DUF433	0.88
PF00092	VWA	0.88
PF13857	Ank_5	0.88
PF00583	Acetyltransf_1	0.88
PF13489	Methyltransf_23	0.88
PF03481	Sua5_C	0.88
PF04773	FecR	0.88
PF13280	WYL	0.88
PF01850	PIN	0.88
PF01408	GFO_IDH_MocA	0.88
PF00672	HAMP	0.88
PF08240	ADH_N	0.88
PF02617	ClpS	0.88
PF14371	DUF4412	0.88
PF11852	Pullul_strch_C	0.88
PF13188	PAS_8	0.88
PF01098	FTSW_RODA_SPOVE	0.88
PF05685	Uma2	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0504	CTP synthase (UTP-ammonia lyase)	Nucleotide transport and metabolism [F]	4.39
COG1083	CMP-N-acetylneuraminic acid synthetase, NeuA/PseF family	Cell wall/membrane/envelope biogenesis [M]	1.75
COG1212	CMP-2-keto-3-deoxyoctulosonic acid synthetase	Cell wall/membrane/envelope biogenesis [M]	1.75
COG1861	Spore coat polysaccharide biosynthesis protein SpsF, cytidylyltransferase family	Cell wall/membrane/envelope biogenesis [M]	1.75
COG0772	Peptodoglycan polymerase FtsW/RodA/SpoVE	Cell cycle control, cell division, chromosome partitioning [D]	0.88
COG2127	ATP-dependent Clp protease adapter protein ClpS	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.88
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.77 %
Unclassified	root	N/A	41.23 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.77 %
Unclassified	root	N/A	41.23 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.77 %
Unclassified	root	N/A	41.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.23 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	35.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.23 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	27.19 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.23 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	18.42 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.63 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	1.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.23 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	7.02 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.63 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.88 %
Acidobacteriia bacterium 12-62-4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	0.88 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.23 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	6.14 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.63 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1.75 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.88 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.88 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.88 %
Acidobacteriia bacterium 12-62-4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.23 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	6.14 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.63 %
Edaphobacter modestus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	1.75 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.88 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.88 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.88 %
Acidobacteriia bacterium 12-62-4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.23 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	6.14 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.63 %
Edaphobacter modestus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	1.75 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.88 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.88 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.88 %
Acidobacteriia bacterium 12-62-4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10174147	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300003320\|rootH2_10323879	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1159	Open in IMG/M
3300005187\|Ga0066675_10603984	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	824	Open in IMG/M
3300005329\|Ga0070683_101528286	All Organisms → cellular organisms → Bacteria → Acidobacteria	642	Open in IMG/M
3300005336\|Ga0070680_100000610	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	24737	Open in IMG/M
3300005436\|Ga0070713_100208530	All Organisms → cellular organisms → Bacteria	1768	Open in IMG/M
3300005436\|Ga0070713_100771257	Not Available	921	Open in IMG/M
3300005436\|Ga0070713_102489326	Not Available	500	Open in IMG/M
3300005529\|Ga0070741_10972805	Not Available	729	Open in IMG/M
3300005531\|Ga0070738_10184786	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	972	Open in IMG/M
3300005531\|Ga0070738_10414481	Not Available	528	Open in IMG/M
3300005532\|Ga0070739_10162344	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	1175	Open in IMG/M
3300005614\|Ga0068856_100219018	All Organisms → cellular organisms → Bacteria	1919	Open in IMG/M
3300005616\|Ga0068852_101048106	All Organisms → cellular organisms → Bacteria → Acidobacteria	835	Open in IMG/M
3300006052\|Ga0075029_100482445	Not Available	816	Open in IMG/M
3300006086\|Ga0075019_10866712	Not Available	578	Open in IMG/M
3300006162\|Ga0075030_100081408	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2658	Open in IMG/M
3300006162\|Ga0075030_100303620	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300006162\|Ga0075030_100883350	Not Available	705	Open in IMG/M
3300006172\|Ga0075018_10533400	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300006638\|Ga0075522_10014707	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5064	Open in IMG/M
3300006755\|Ga0079222_12275117	Not Available	540	Open in IMG/M
3300009175\|Ga0073936_10020971	All Organisms → cellular organisms → Bacteria	7140	Open in IMG/M
3300009551\|Ga0105238_12726215	Not Available	531	Open in IMG/M
3300009628\|Ga0116125_1028192	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300009635\|Ga0116117_1020949	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1644	Open in IMG/M
3300010048\|Ga0126373_10001384	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	17236	Open in IMG/M
3300010048\|Ga0126373_12725686	Not Available	551	Open in IMG/M
3300010048\|Ga0126373_12950166	Not Available	531	Open in IMG/M
3300010371\|Ga0134125_10979658	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300010376\|Ga0126381_100046873	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5269	Open in IMG/M
3300010396\|Ga0134126_10397330	Not Available	1602	Open in IMG/M
3300010396\|Ga0134126_11406807	Not Available	771	Open in IMG/M
3300012199\|Ga0137383_10490932	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300014159\|Ga0181530_10373337	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300014168\|Ga0181534_10108027	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1398	Open in IMG/M
3300014168\|Ga0181534_10157542	Not Available	1167	Open in IMG/M
3300014169\|Ga0181531_10781572	Not Available	595	Open in IMG/M
3300014169\|Ga0181531_10798845	Not Available	589	Open in IMG/M
3300014200\|Ga0181526_10427383	Not Available	840	Open in IMG/M
3300014201\|Ga0181537_10443846	Not Available	889	Open in IMG/M
3300014492\|Ga0182013_10200022	All Organisms → cellular organisms → Bacteria	1202	Open in IMG/M
3300014493\|Ga0182016_10005118	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	14229	Open in IMG/M
3300014493\|Ga0182016_10064346	All Organisms → cellular organisms → Bacteria → Acidobacteria	2760	Open in IMG/M
3300014493\|Ga0182016_10619164	Not Available	614	Open in IMG/M
3300014499\|Ga0182012_10362503	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300014501\|Ga0182024_12753599	Not Available	525	Open in IMG/M
3300014655\|Ga0181516_10188140	Not Available	1047	Open in IMG/M
3300014657\|Ga0181522_10850184	Not Available	561	Open in IMG/M
3300014838\|Ga0182030_10368149	All Organisms → cellular organisms → Bacteria → Acidobacteria	1522	Open in IMG/M
3300014838\|Ga0182030_10412944	Not Available	1398	Open in IMG/M
3300017948\|Ga0187847_10719386	Not Available	562	Open in IMG/M
3300018034\|Ga0187863_10444696	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300018043\|Ga0187887_10859672	Not Available	537	Open in IMG/M
3300019256\|Ga0181508_1571733	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300019268\|Ga0181514_1350479	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	682	Open in IMG/M
3300019270\|Ga0181512_1383045	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2920	Open in IMG/M
3300020078\|Ga0206352_11201041	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300021142\|Ga0214192_1046305	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1369	Open in IMG/M
3300021560\|Ga0126371_10361547	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1588	Open in IMG/M
3300021861\|Ga0213853_10150960	Not Available	554	Open in IMG/M
3300022467\|Ga0224712_10238134	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300022555\|Ga0212088_10083410	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	3064	Open in IMG/M
3300025862\|Ga0209483_1017528	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	3766	Open in IMG/M
3300025909\|Ga0207705_11265367	Not Available	564	Open in IMG/M
3300025909\|Ga0207705_11358146	Not Available	541	Open in IMG/M
3300025913\|Ga0207695_10015150	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	9091	Open in IMG/M
3300025914\|Ga0207671_10078878	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	2467	Open in IMG/M
3300025917\|Ga0207660_11153272	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300025921\|Ga0207652_10954441	All Organisms → cellular organisms → Bacteria → Proteobacteria	755	Open in IMG/M
3300025928\|Ga0207700_10855845	Not Available	814	Open in IMG/M
3300025932\|Ga0207690_11463618	Not Available	571	Open in IMG/M
3300027898\|Ga0209067_10722216	Not Available	578	Open in IMG/M
3300027911\|Ga0209698_10088352	Not Available	2615	Open in IMG/M
3300027911\|Ga0209698_10351335	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300027965\|Ga0209062_1206197	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300027965\|Ga0209062_1317513	Not Available	518	Open in IMG/M
3300028552\|Ga0302149_1108992	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	715	Open in IMG/M
3300028765\|Ga0302198_10172347	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1094	Open in IMG/M
3300028813\|Ga0302157_10579309	Not Available	580	Open in IMG/M
3300028866\|Ga0302278_10173490	Not Available	1098	Open in IMG/M
3300028882\|Ga0302154_10210435	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	984	Open in IMG/M
3300028882\|Ga0302154_10281159	Not Available	822	Open in IMG/M
3300029883\|Ga0311327_10427327	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300029911\|Ga0311361_10357959	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1576	Open in IMG/M
3300029911\|Ga0311361_10578738	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1080	Open in IMG/M
3300029911\|Ga0311361_11027715	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300029911\|Ga0311361_11326638	Not Available	561	Open in IMG/M
3300029913\|Ga0311362_10863934	Not Available	734	Open in IMG/M
3300029915\|Ga0311358_10635714	Not Available	798	Open in IMG/M
3300029939\|Ga0311328_10064986	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	3177	Open in IMG/M
3300029951\|Ga0311371_12513044	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300029953\|Ga0311343_11146097	Not Available	598	Open in IMG/M
3300029955\|Ga0311342_10782138	Not Available	738	Open in IMG/M
3300029999\|Ga0311339_10555410	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1154	Open in IMG/M
3300030688\|Ga0311345_10746962	Not Available	777	Open in IMG/M
3300031234\|Ga0302325_10425748	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2052	Open in IMG/M
3300031234\|Ga0302325_11536411	Not Available	854	Open in IMG/M
3300031234\|Ga0302325_11576311	Not Available	840	Open in IMG/M
3300031524\|Ga0302320_10002959	All Organisms → cellular organisms → Bacteria → Acidobacteria	39664	Open in IMG/M
3300031524\|Ga0302320_10232874	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2567	Open in IMG/M
3300031525\|Ga0302326_10909793	Not Available	1250	Open in IMG/M
3300031595\|Ga0265313_10316426	Not Available	624	Open in IMG/M
3300031708\|Ga0310686_101212703	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300031788\|Ga0302319_10282502	All Organisms → cellular organisms → Bacteria → Acidobacteria	1969	Open in IMG/M
3300031938\|Ga0308175_100000299	All Organisms → cellular organisms → Bacteria → Acidobacteria	36122	Open in IMG/M
3300031938\|Ga0308175_100312131	All Organisms → cellular organisms → Bacteria	1608	Open in IMG/M
3300031939\|Ga0308174_10005643	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	6748	Open in IMG/M
3300031939\|Ga0308174_10272323	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1324	Open in IMG/M
3300031939\|Ga0308174_10322878	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300031996\|Ga0308176_10028961	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	4287	Open in IMG/M
3300031996\|Ga0308176_10090218	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2659	Open in IMG/M
3300032515\|Ga0348332_10281106	Not Available	755	Open in IMG/M
3300033405\|Ga0326727_10042578	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7477	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.23%
Host-Associated	Host-Associated	8.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.91%
Aquatic	Environmental → Aquatic	26.32%
Plants	Host-Associated → Plants	8.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	40.35%
Peat	Environmental → Terrestrial → Peat	23.68%
Freshwater	Environmental → Aquatic → Freshwater	18.42%
Sediment	Environmental → Aquatic → Sediment	7.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.75%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.88%
Rhizome	Host-Associated → Plants → Rhizome	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.32%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	23.68%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.02%
Loam	Environmental → Terrestrial → Soil → Loam	7.02%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.63%
Lake	Environmental → Aquatic → Freshwater → Lake	1.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.88%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.88%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	23.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	13.16%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.02%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.63%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.75%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.88%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.88%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	17.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.14%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	6.14%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.26%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.26%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.39%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.51%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.51%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.63%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	1.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.75%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.75%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.88%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.88%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.88%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.88%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.88%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009175	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300019256	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019268	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019270	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021142	Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnion	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027965	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300028552	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1	Environmental	Open in IMG/M
3300028765	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2	Environmental	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029953	II_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_101741472	3300001356	Peatlands Soil	MTPGPDIPKPLSMEQLVRCLERQFGPVTLVPDKGSTKLRVAGVALTFLEAERLCLGETTLDSLRTAR*
rootH2_103238792	3300003320	Sugarcane Root And Bulk Soil	MIPRPLDMERLVRCLEKRFGSVELVPDEGLTRLRVAGVALSFLDAERLCLGETSLDDLRRAAA*
Ga0066675_106039841	3300005187	Soil	MEQLVRCLEKSFGPVDLVPEQGYTKLRVSGVALTFLEAERLCLGETTLEAIRQSHNQS*
Ga0070683_1015282862	3300005329	Corn Rhizosphere	MVPRPLNMEQLVRCLEKRFGPVDLVPDEGLTKLRVEGVALTFLEAERLCLGETSLDDLRKRA*
Ga0070680_1000006107	3300005336	Corn Rhizosphere	MHQIPRPLDMQQLVRCLESQFGPVALSADDGYTKLIVDGIALTFLEAERVCLGEASLEDFRRA*
Ga0070713_1002085303	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VNPIPRPLNMEQLVRCLRKRFGGVDLVPDEGLTKLRVAGVDLTFLEAERLCLGEVTIEELKSR*
Ga0070713_1007712572	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MIPRPLDMEQLVRCLEKRFGPVDLFADEGLTKLRVSGVALTFLEAERVCLGETTLEELKRSTV*
Ga0070713_1024893262	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MIPRPLNMEQLVRCLEKQFGPVELVPDEGYTKLRVSGIALTFLDAEKLCLGETTIEKLRAR*
Ga0070741_109728052	3300005529	Surface Soil	MHQIPRPLDMQQLVRCLERQFGPVKLSADDGYTKLVVNGIALTFLEAERVCLGEASLEDFRRA*
Ga0070738_101847863	3300005531	Surface Soil	QIPRPVDMQQLVRCLERQFGPVTLSADNGYTKLLVKGVALTFLEAERVCLGEASLEDFRRA*
Ga0070738_104144811	3300005531	Surface Soil	RGRMHQIPRPLDMQQLVRCLERQFGPVKLSADDGYTKLVVNGIALTFLEAERVCLGEASLEDFRRA*
Ga0070739_101623442	3300005532	Surface Soil	MHQIPRPVDMQQLVRCLERQFGPVTLSADNGYTKLLVKGVALTFLEAERVCLGEASLEDFRRA*
Ga0068856_1002190184	3300005614	Corn Rhizosphere	MGDVPRPLNMEQLVRCLEKRYGRVELVPAEGLTKLRVAGIALSFLEAERLCLGETTLDALRAKSSPDPK*
Ga0068852_1010481062	3300005616	Corn Rhizosphere	MDVPRPQNMEQLVRCLERTYGPVELIPAEGLTKLKVSGIALSFLEAERLCLGETTLDKLSSSPGPK*
Ga0075029_1004824452	3300006052	Watersheds	VIPRPLNMEQLVRCLEKRFGTVELFPDEGYTKLRVAGIPLTFLEAERLCLGETTLDELKSAAHR*
Ga0075019_108667122	3300006086	Watersheds	VIPRPLNLEQLVRCLEKRYGTVELFPDEGYTKLRVAGLPLTFLEAERLCLGETTLDELKGTARS*
Ga0075030_1000814084	3300006162	Watersheds	VIPRPLDLEQLVRCLEKRFGTVDLFPDEGYTKLRVAGLALTFLEAERLCLGETTLDELKGAARP*
Ga0075030_1003036202	3300006162	Watersheds	MDGIPRPLNMEQLVRCLEKCYGAVELVPDEGLTKLRVEDVLISFLDAERLCLGETTLDQLRDRSPRRE*
Ga0075030_1008833502	3300006162	Watersheds	MDAIPRPLNLEQLVRCLEKRFGPVDLFPDEGYTKLRVAGLPLTFLDAEKLCLGEITFDELKSAAHT*
Ga0075018_105334002	3300006172	Watersheds	MIPRPVNMEQLVRCLERQFGPVSLFPDDGYTKLRVAGMALTFLEAERLCLGETTLEALEKGEAPTKNEALKK*
Ga0075522_100147072	3300006638	Arctic Peat Soil	MPPRWPERPLDMEQLVRCLERQFGTVDLFPDEGLTKLCVAGLALTFLEAERLCLGETSLEELKKARA*
Ga0079222_122751172	3300006755	Agricultural Soil	MRQIPRPLDMQQLVRCLERQFGPVTLSADDGYTKLVVSGIALTFLEADRVCLGEAALEDFRRT*
Ga0073936_100209717	3300009175	Freshwater Lake Hypolimnion	MIPRPLNLEQLVRCLERQFGPVSLFPDEGFTKLRVDGVALTFLDAERLCLGETTLDALKGK*
Ga0105238_127262152	3300009551	Corn Rhizosphere	MGEIPRPLNMDHLVRCLERRYGPVDLVPAEGLTKLRVSGLDLTFLQAERLCLGEVTLEQLQTTSG*
Ga0116125_10281922	3300009628	Peatland	MEQLVRCLERRFGQVDLLPDEGLTKLLVDGLALTFLDAERLCLGETSIEELREAH*
Ga0116117_10209492	3300009635	Peatland	MEQLVRCLERRFGQVDLSPGEGLTKLLVDGLALTFLDAERLCLGETSIEELREAH*
Ga0126373_100013842	3300010048	Tropical Forest Soil	MEQLVRCLRKRFGGVDLVPNEGLTKLRVAGVDLTFLEAERLCLGEVTLDELKSR*
Ga0126373_127256861	3300010048	Tropical Forest Soil	LVRCLRKRFGSVDLVPDEGLTKLRVAGVDLTFLEAERLCLGEVTLEELKSQ*
Ga0126373_129501662	3300010048	Tropical Forest Soil	MEQLVRCLRKRFGGVDLVPNEGLTKLRVAGVDLTFLEAERLCLGEVTLEELKSQ*
Ga0134125_109796582	3300010371	Terrestrial Soil	MRQIPRPLDMQQLVRCLERQFGPVTLSADDGYTKLVVSGIALTFLEAERVCLGEASVEDFRRA*
Ga0126381_1000468733	3300010376	Tropical Forest Soil	VSPIPRPLNMEQLVRCLRKRFGSVDLVPDEGLTKLRVAGVDLTFLEAERLCLGEVTLEELKSQ*
Ga0134126_103973302	3300010396	Terrestrial Soil	MRQIPRPLDMQQLVRCLERQFGPVTLSADDGYTKLVVSGIALTFLEAERVCLGEAALEDFRRT*
Ga0134126_114068072	3300010396	Terrestrial Soil	MGEIPRPLNMDQLVRCLERRYGPVDLVPAEGLTKLHVSGLDLTFLEAERLCLGEVTLEQLQATG*
Ga0137383_104909322	3300012199	Vadose Zone Soil	MLPRPLDMEQLVRCLEKRFGPVDLVPDEGYTKLRVAGVALTFLEAERLCLAEATLDNIQPKR*
Ga0181530_103733372	3300014159	Bog	MEQLVRCLERRFGPVDLFPDEGLTKLRVGGVALTFLDAERLCLGETTLEELKKAAVR*
Ga0181534_101080273	3300014168	Bog	MGAINRPLNMEQLVRCLERRFGPVDLFPDEGYTKLRVAGTSLTFLDAERLCLGEVTLDELSARLRPS*
Ga0181534_101575422	3300014168	Bog	MEQLVRCLERRFGQVDLLPDEGLTKLLVDGLPLTFLDAERLCLGETSIEELREAH*
Ga0181531_107815722	3300014169	Bog	MEQLVRCLEKRYGEVDLFPDEGYTKLRVSGLALTFLDAERLCLGETTIDDLKKAAA*
Ga0181531_107988452	3300014169	Bog	MEQLVRCLEKRYGEVDLFPDEGYTKLRVSGLALTFLEAERLCLGETTLDDLKEAAA*
Ga0181526_104273833	3300014200	Bog	MEQLVRCLERRFGPVELFPDEGYTKLRVNGLALTFLDAERLCLGETTLEALRKP
Ga0181537_104438461	3300014201	Bog	MEQLVRCLEKRYGEVDLFPDEGYTRLRVAGLALTFLDAERLCLGETTLDDLKRAAA*
Ga0182013_102000223	3300014492	Bog	VTDPSIQRPLDMEQLVRCLEKRFGPVDLFPDDGLTKLRVAGVALSFLEAERVCLGEATLEQFRR*
Ga0182016_100051187	3300014493	Bog	VTDPSIQRPLDMEQIVRCLEKRFGPVDLFPDDGLTKLRVAGVALSFLEAERVCLGEATLEQFRR*
Ga0182016_100643463	3300014493	Bog	MIPRPLNMEQLVRCLEKRYGVVDLFPDEGYTKLRVGGIALTFLEAERLCLGETTLDDLKEAAA*
Ga0182016_106191642	3300014493	Bog	MEQLVRCLERRFGQVDLLPDEGLTKLLVDGLPLTFLDAERLCLGETSIEELRKAH*
Ga0182012_103625032	3300014499	Bog	MDAIPRPLNMQQLVRCLEKRFGGVELVPDEGLTKLRVDDVLISFLDAERLCLGETTLEQLRSPK*
Ga0182024_127535991	3300014501	Permafrost	MEQLVRCLERSFGPVDLFPDEGLTRLRVAGLALTFLEAERLCLGETSIDELRKAQ*
Ga0181516_101881402	3300014655	Bog	MEQLVRCLERRFGQVDLLPDEGLTKLLVDGLPLTFLDAERLCLGETSIEELRKAQ*
Ga0181522_108501842	3300014657	Bog	MEQLVRCLERRFGQVDLLPDEGLTKLLVVGLPLTFLDAERLCLGETSIEELRKAH*
Ga0182030_103681492	3300014838	Bog	MDAIPRPLNMEQLVRCLEKRYGAVELVPDEGLTKLRAEAVLLSFLDAERLCLGETTLDQLRKP*
Ga0182030_104129443	3300014838	Bog	MEQLVRCLERRFGPVDLFPGEGLTRLRVAGVALTFLEAERLCLGETSIEELRKNTPG*
Ga0187847_107193862	3300017948	Peatland	MEQLVRCLERRFGQVDLLPDEGLTKLLVDGLALTFLDAERLCLGEISIEELRTKSAELRKAH
Ga0187863_104446962	3300018034	Peatland	MNRLPIDRPLNMEQLVRCLERRFGPVDLFPDEGLTKLRVAGVALTFLDAERLCLGETTLEELKKAAVR
Ga0187887_108596721	3300018043	Peatland	MEQLVRCLERRFGQVDLLPDEGLTKLLVDGLALTFLDAERLCLGETSIEEL
Ga0181508_15717332	3300019256	Peatland	MIPRPLNMEQLVRCLEKRFGPVDLIPGEGFTKLSVTGIPLTFLEAERLCLGEITLDDLRKMG
Ga0181514_13504792	3300019268	Peatland	MIPRPLNMEQLVRCLEKRYGEVDLFPDEGYTRLRVAGLALTFLDAERLCLGETTLDDLKRAAA
Ga0181512_13830452	3300019270	Peatland	MGAINRPLNMEQLVRCLERRFGPVDLFPDEGYTKLRVAGTSLTFLDAERLCLGEVTLDELSARLRPS
Ga0206352_112010412	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MGEIPRPLNMEQLVRCLERRYGPVDLLPAEGLTKLRVSGLDLTFLQAERLCLGEVTLEQLQTTSG
Ga0214192_10463052	3300021142	Freshwater	MIPRPLNLEQLVRCLERQFGPVTLAAEDGYTKLRVGDVAMTFLEAERVCLGETTLEALKSATPKK
Ga0126371_103615472	3300021560	Tropical Forest Soil	VNSIPRPLDMEQLVRCLRKRFGGVDLVPNEGLTKLRVAGVDLTFLEAERLCLGEVTLDELKSR
Ga0213853_101509601	3300021861	Watersheds	VIPRPLNMEQLVRCLEKRFGTVELFPDEGYTKLRVAGLPLTFLEAERLCLGETTLDDLKGAAHR
Ga0224712_102381342	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MHQIPRPLDMQQLVRCLESQFGPVALSADDGYTKLIVDGIALTFLEAERVCLGEASLEDFRRA
Ga0212088_100834104	3300022555	Freshwater Lake Hypolimnion	MIPRPLNLEQLVRCLERQFGPVSLFPDEGFTKLRVDGVALTFLDAERLCLGETTLDALKG
Ga0209483_10175282	3300025862	Arctic Peat Soil	MPPRWPERPLDMEQLVRCLERQFGTVDLFPDEGLTKLCVAGLALTFLEAERLCLGETSLEELKKARA
Ga0207705_112653671	3300025909	Corn Rhizosphere	MGDIPRPLNMEQLVRCLEKRYGPVALIPGESLTKLRIAGLSLSFLEAERLCLGEITLDELSARQQRK
Ga0207705_113581461	3300025909	Corn Rhizosphere	MIPRPLDMQQLVRCLEKRYGPVELFADEGYTKLKVGGVPLTFLDAERLCLGEITIESLQAKD
Ga0207695_100151506	3300025913	Corn Rhizosphere	MISRPANLEQLVRCLERQFGPVTLVPEEGFTKLNVAGVILTFVEAEKLCLGQTSIDALRSGYR
Ga0207671_100788784	3300025914	Corn Rhizosphere	MIRRPANLEELVRCLERQYGPVMLFPDEGYTKLQVAGVALTFLEAERLCLGETTLEALKA
Ga0207660_111532723	3300025917	Corn Rhizosphere	RCSAKKRAPSRTNNRRGPMHQIPRPLDMQQLVRCLESQFGPVALSADDGYTKLIVDGIALTFLEAERVCLGEASLEDFRRA
Ga0207652_109544412	3300025921	Corn Rhizosphere	QLVRCLESQFGPVALSADDGYTKLIVDGIALTFLEAERVCLGEATLEDFRRA
Ga0207700_108558451	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MIPRPLDMEQLVRCLEKRFGPVDLFADEGLSKLRVAGVALTFLEAERVCLGETTLEELK
Ga0207690_114636181	3300025932	Corn Rhizosphere	MHQIPRPLDMQQLVRCLESQFGPVALSADDGYTKLIVDGIALTFLEAERVCLGE
Ga0209067_107222161	3300027898	Watersheds	VIPRPLNLEQLVRCLEKRYGTVELFPDEGYTKLRVAGLPLTFLEAERLCLGETALDELKGTARS
Ga0209698_100883522	3300027911	Watersheds	VIPRPLDLEQLVRCLEKRFGTVDLFPDEGYTKLRVAGLALTFLEAERLCLGETTLDELKGAARP
Ga0209698_103513353	3300027911	Watersheds	MDGIPRPLNMEQLVRCLEKCYGAVELVPDEGLTKLRVEDVLISFLDAERLCLGETTLDQLRDRSPRRE
Ga0209062_12061973	3300027965	Surface Soil	QIPRPVDMQQLVRCLERQFGPVTLSADNGYTKLLVKGVALTFLEAERVCLGEASLEDFRR
Ga0209062_13175132	3300027965	Surface Soil	MHQIPRPLDMQQLVRCLERQFGPVKLSADDGYTKLVVNGIALTFLEAERVCLGEASLEDFRRA
Ga0302149_11089922	3300028552	Bog	MQAIPRPLNMEQLVRCLEKRFVPVELFPDEGYTKLRVAGVPLTFLEAERLCLGETTLEALKKPA
Ga0302198_101723472	3300028765	Bog	MIPRPLNMEQLVRCLEKRYGVVDLFPDEGYTKLRVGGIALTFLEAERLCLGETTLDDLKEAAA
Ga0302157_105793092	3300028813	Bog	MEQLVRCLERRFGQVELFPDEGYTKLRVSGLALTFLDAERLCLGETTLEELRKPAA
Ga0302278_101734901	3300028866	Bog	MQAIPRPLNMEQLVRCLEKRFVPVELFPDEGYTKLRVAGVPLTFLEAERLCLGETTL
Ga0302154_102104352	3300028882	Bog	MQAIPRPLNMEQLVRCLEKRFGPVELFPDEGYTKLRVAGVPLTFLEAERLCLGETTLEALKKPA
Ga0302154_102811592	3300028882	Bog	VETIPRPLNMEQLVRCLEKRFGPVDLFPDAGFTKLRVAGTPLTFLEAERLCLGETTLEDLKKAN
Ga0311327_104273272	3300029883	Bog	VETIPRPLNMEQLVRCLEKRFGTVELFPDEGFTKLRVAGTPLTFLEAERLCLGETTLEDLKKSS
Ga0311361_103579591	3300029911	Bog	VETIPRPLNMEQLVRCLEKRFGPVDLFPDAGFTKLRVAGTPLTFLEAERLCLGETTLEDLKK
Ga0311361_105787383	3300029911	Bog	RCLERRFGQVELFPDEGYTKLRVSGLALTFLDAERLCLGETTLEELRKPAA
Ga0311361_110277152	3300029911	Bog	VRCLEKRFGGIELVPDEGLTKLRVDDVLISFLDAERLCLGETTLEQLRSPK
Ga0311361_113266382	3300029911	Bog	MISRPLNMEQLVRCLEKRYGAVDLFPDEGYTKLRVGGAALTFLEAERLCLGETTLDDLKKAVA
Ga0311362_108639342	3300029913	Bog	MEQLVRCLEKRYGAVDLFPDEGYTKLRVGGAALTFLEAERLCLGETTLDDLKKAVA
Ga0311358_106357142	3300029915	Bog	MIPRPLNMEQLVRCLEKRYGVVDLFPDEGYTKLRVGGVALTFLETERLCIGETTLDDLKKAAA
Ga0311328_100649866	3300029939	Bog	MEQLVRCLEKRFGPVDLFPDAGFTKLRVAGTPLTFLEAERLCLGETTLEDLKKAN
Ga0311371_125130441	3300029951	Palsa	MIPRPLNMEQLVRCLEKRFGPVELFPDEGYTRLKVAGTPLTFLDAERLCLGEVTLDELNSTART
Ga0311343_111460972	3300029953	Bog	MIPRPLNMEQLVRCLEKRYGVVDLFPDEGYTKLRVGGVALTFLETERLCLGETTLDDLKKAAA
Ga0311342_107821381	3300029955	Bog	DEVGLFLVPRPLNMEQLVRCLERRFGQVELFPDEGYTKLRVSGLALTFLDAERLCLGETTLEELRKPAA
Ga0311339_105554102	3300029999	Palsa	MIPRPLNMEQLVRCLEKRYGEVDLFPDEGYTKLRVAGLALTFLDAERLCLGETTLDDLKKAAA
Ga0311345_107469621	3300030688	Bog	MEQLVRCLERRFGQVELFPDEGYTKLRVSGLALTFLDAERLCLGETTLE
Ga0302325_104257482	3300031234	Palsa	MIPRPLNMEQLVRCLERRYGEVDLFPDEGYTKLRVAGVALTFLEAERLCLGETTLDDLKKAAA
Ga0302325_115364112	3300031234	Palsa	MIPRPLNMEQLVRCLEKRYGEVDLFPDEGYTKLRVGGVALTFLDAERLCLGETTLDDLKKTAA
Ga0302325_115763112	3300031234	Palsa	MIPRPLNMEQLVRCLEKRYGEVDLFPAEGYTKLRVSGLALTFLDAERLCLGETTLDDLKKAAA
Ga0302320_1000295928	3300031524	Bog	MEQLVRCLERRFGQVDLLPDEGLTKLLVDGLPLTFLDAERLCLGETSIEELRKAH
Ga0302320_102328742	3300031524	Bog	MIPPRPPDRPLDMEQLVRCLERRFGTVDLVPDEGYTKLRVAGLALTFLEAERLCLGQTTLEDLKRAPV
Ga0302326_109097933	3300031525	Palsa	MIHRPLDMEQLVRCLEKRYGEVDLFPDEGYTKLRVAGLALTFLDAERLCLGETTLDDLKKAAA
Ga0265313_103164262	3300031595	Rhizosphere	MEQLVRCLERRFGPVDLLPDEGLTRLRVDGLALTFLEAERLCLGETSIEELKKAHG
Ga0310686_1012127031	3300031708	Soil	MILRRDILGPLDMEQLVRCLERQFGTVELFSNEGQTKLRVAGVALTFLEAERLCLGETTLDNLRPVNCRCT
Ga0302319_102825021	3300031788	Bog	VSRLPIDRPLNPVDRPLNMEQLVRCLERRFGQVDLLPDEGLTKLLVDGLPLTFLDAERLCLGETSIEELRKAH
Ga0308175_10000029923	3300031938	Soil	MRQIPRPLDMQQLVHCLERQFGPVTLNADDGYTKLVVSGIALTFLEAERVCLGEASLEDFRRA
Ga0308175_1003121313	3300031938	Soil	MHQIPRPLDMQQLVRCLERQFGPVTLRADDGYTKLVVSGLALTFLEAERVCLGEASLEDFRRA
Ga0308174_100056432	3300031939	Soil	MHQIPRPLDMQQLVRCLERQFGPVTLRADDGYTKLVVSGIALTFVEAERVCLGETSLEDFRRA
Ga0308174_102723232	3300031939	Soil	MISRPANLEQLVRCLERQFGPVTLVPEEGFTKLNVAGVILTFVEAEKLCLGQTTIDALRSGYR
Ga0308174_103228781	3300031939	Soil	PQPHNKNMIPRPLDMEQLVRCLEKKYGEVDLIPDEGYTKLRVAGVSLTFLDAERLCLGETTLDDLKRK
Ga0308176_100289612	3300031996	Soil	MIPRPLNMEQLVRCLEKRFGPVELVPDQGFTKLRVTGVALTFLEAERLCLGETSLEELKKPV
Ga0308176_100902182	3300031996	Soil	MHQIPRPLDMQQLVRCLERQFGPVTLRADDGYTKLIVSGLALTFLEAERVCLGEASLEDFRRA
Ga0348332_102811061	3300032515	Plant Litter	MVPRPLNMEQLVRCLEKRFGPVDLFPDEGYTKLRVLGTPLTFLEAERLCLGETTLDNLQKTARA
Ga0326727_100425785	3300033405	Peat Soil	MEQLVRCLERRFGQVDLLPDEGLTKLLVVGLPLTFLDAERLCLGETSIEELRKAH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081711

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences