Metagenome / Metatranscriptome Family F081621

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081621
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	84 residues
Representative Sequence	VATGWETPQVRRCECGAADCDAVIYMTWDEQDRADHVPQRWTIARGHIPRGGARWRVVEETDRFVIVEIDEQDPSPA
Number of Associated Samples	93
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	33.33 %
% of genes near scaffold ends (potentially truncated)	29.82 %
% of genes from short scaffolds (< 2000 bps)	88.60 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.421 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.281 % of family members)
Environment Ontology (ENVO)	Unclassified (28.947 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.123 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.62% β-sheet: 25.71% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
e.1.1.0: automated matches	d4p0fa_	4p0f	0.51374
c.69.1.0: automated matches	d4j7aa_	4j7a	0.50998

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF14329	DUF4386	9.65
PF00313	CSD	4.39
PF02861	Clp_N	4.39
PF12120	Arr-ms	4.39
PF00583	Acetyltransf_1	2.63
PF00196	GerE	1.75
PF08281	Sigma70_r4_2	1.75
PF08240	ADH_N	1.75
PF06803	DUF1232	1.75
PF12680	SnoaL_2	0.88
PF01209	Ubie_methyltran	0.88
PF01243	Putative_PNPOx	0.88
PF00118	Cpn60_TCP1	0.88
PF05592	Bac_rhamnosid	0.88
PF04828	GFA	0.88
PF01252	Peptidase_A8	0.88
PF01625	PMSR	0.88
PF13407	Peripla_BP_4	0.88
PF13404	HTH_AsnC-type	0.88
PF07883	Cupin_2	0.88
PF00171	Aldedh	0.88
PF07366	SnoaL	0.88
PF02653	BPD_transp_2	0.88
PF00278	Orn_DAP_Arg_deC	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	4.39
COG0597	Lipoprotein signal peptidase	Cell wall/membrane/envelope biogenesis [M]	1.75
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	1.75
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.88
COG0019	Diaminopimelate decarboxylase	Amino acid transport and metabolism [E]	0.88
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.88
COG1166	Arginine decarboxylase (spermidine biosynthesis)	Amino acid transport and metabolism [E]	0.88
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.88
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.88
COG3408	Glycogen debranching enzyme (alpha-1,6-glucosidase)	Carbohydrate transport and metabolism [G]	0.88
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.88
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.42 %
Unclassified	root	N/A	31.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.42 %
Unclassified	root	N/A	31.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.42 %
Unclassified	root	N/A	31.58 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	60.53 %
Unclassified	root	N/A	31.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	54.39 %
Unclassified	root	N/A	31.58 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5.26 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.58 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	21.05 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	3.51 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	3.51 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.58 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	14.04 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	3.51 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	2.63 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.75 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	0.88 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.88 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.88 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.04 %
Ktedonobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae	3.51 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2.63 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.75 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	0.88 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	0.88 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.88 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.04 %
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	3.51 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	2.63 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.75 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	0.88 %
Acidipropionibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Acidipropionibacterium	0.88 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	0.88 %
Cryobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.04 %
Ktedonobacter racemifer	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	3.51 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	2.63 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.75 %
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	0.88 %
Acidipropionibacterium virtanenii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Acidipropionibacterium → Acidipropionibacterium virtanenii	0.88 %
Cryobacterium flavum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium → Cryobacterium flavum	0.88 %
Variovorax sp. WDL1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. WDL1	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.04 %
Ktedonobacter racemifer DSM 44963	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer → Ktedonobacter racemifer DSM 44963	3.51 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	2.63 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.75 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	0.88 %
Acidipropionibacterium virtanenii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Acidipropionibacterium → Acidipropionibacterium virtanenii	0.88 %
Cryobacterium flavum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium → Cryobacterium flavum	0.88 %
Variovorax sp. WDL1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. WDL1	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_107837821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1248	Open in IMG/M
3300000956\|JGI10216J12902_109647729	Not Available	533	Open in IMG/M
3300002568\|C688J35102_117867357	Not Available	512	Open in IMG/M
3300002568\|C688J35102_119404192	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300002915\|JGI25387J43893_1047300	Not Available	602	Open in IMG/M
3300004081\|Ga0063454_100003966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3166	Open in IMG/M
3300004153\|Ga0063455_100003146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2917	Open in IMG/M
3300004157\|Ga0062590_102172371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium → Cryobacterium flavum	580	Open in IMG/M
3300004480\|Ga0062592_100865093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	810	Open in IMG/M
3300005093\|Ga0062594_101337675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	722	Open in IMG/M
3300005329\|Ga0070683_100082672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3008	Open in IMG/M
3300005334\|Ga0068869_101063777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	707	Open in IMG/M
3300005337\|Ga0070682_100113246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1811	Open in IMG/M
3300005345\|Ga0070692_11127811	Not Available	555	Open in IMG/M
3300005355\|Ga0070671_100052909	All Organisms → cellular organisms → Bacteria	3376	Open in IMG/M
3300005356\|Ga0070674_100801863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	813	Open in IMG/M
3300005365\|Ga0070688_100116247	All Organisms → cellular organisms → Bacteria	1786	Open in IMG/M
3300005366\|Ga0070659_101166325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	680	Open in IMG/M
3300005434\|Ga0070709_11140056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	625	Open in IMG/M
3300005437\|Ga0070710_10325317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1010	Open in IMG/M
3300005439\|Ga0070711_100566015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer → Ktedonobacter racemifer DSM 44963	944	Open in IMG/M
3300005440\|Ga0070705_100404987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1011	Open in IMG/M
3300005441\|Ga0070700_100965962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	698	Open in IMG/M
3300005441\|Ga0070700_101014273	Not Available	683	Open in IMG/M
3300005444\|Ga0070694_101148903	Not Available	649	Open in IMG/M
3300005455\|Ga0070663_101565077	Not Available	587	Open in IMG/M
3300005456\|Ga0070678_100168162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1783	Open in IMG/M
3300005526\|Ga0073909_10274053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	758	Open in IMG/M
3300005526\|Ga0073909_10572479	Not Available	555	Open in IMG/M
3300005530\|Ga0070679_100305762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1540	Open in IMG/M
3300005546\|Ga0070696_101529556	Not Available	572	Open in IMG/M
3300005547\|Ga0070693_100066659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2107	Open in IMG/M
3300005578\|Ga0068854_100509047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1015	Open in IMG/M
3300005616\|Ga0068852_101571607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	680	Open in IMG/M
3300005617\|Ga0068859_102830931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	532	Open in IMG/M
3300006042\|Ga0075368_10261492	Not Available	741	Open in IMG/M
3300006049\|Ga0075417_10223501	Not Available	897	Open in IMG/M
3300006175\|Ga0070712_100378764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1164	Open in IMG/M
3300006573\|Ga0074055_11455708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1178	Open in IMG/M
3300006578\|Ga0074059_10025766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1305	Open in IMG/M
3300006755\|Ga0079222_10198923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1203	Open in IMG/M
3300006755\|Ga0079222_10329753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Acidipropionibacterium → Acidipropionibacterium virtanenii	1017	Open in IMG/M
3300006755\|Ga0079222_11148549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	689	Open in IMG/M
3300006806\|Ga0079220_10053615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1914	Open in IMG/M
3300006806\|Ga0079220_10855404	Not Available	698	Open in IMG/M
3300006806\|Ga0079220_11674154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	555	Open in IMG/M
3300006854\|Ga0075425_101288997	All Organisms → cellular organisms → Bacteria → Terrabacteria group	828	Open in IMG/M
3300006854\|Ga0075425_103175924	Not Available	500	Open in IMG/M
3300006953\|Ga0074063_10125785	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300006954\|Ga0079219_10216609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1103	Open in IMG/M
3300006954\|Ga0079219_10773006	Not Available	748	Open in IMG/M
3300009098\|Ga0105245_10835673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	960	Open in IMG/M
3300009098\|Ga0105245_11230594	Not Available	797	Open in IMG/M
3300009148\|Ga0105243_11377897	Not Available	725	Open in IMG/M
3300009176\|Ga0105242_11817975	Not Available	648	Open in IMG/M
3300009177\|Ga0105248_10263934	All Organisms → cellular organisms → Bacteria	1938	Open in IMG/M
3300009789\|Ga0126307_10522439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	958	Open in IMG/M
3300010044\|Ga0126310_10873621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	698	Open in IMG/M
3300010044\|Ga0126310_10964504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	669	Open in IMG/M
3300010371\|Ga0134125_10384478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1557	Open in IMG/M
3300010373\|Ga0134128_10052700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4702	Open in IMG/M
3300010373\|Ga0134128_11183483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	843	Open in IMG/M
3300010375\|Ga0105239_11153625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	892	Open in IMG/M
3300010396\|Ga0134126_10366724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1677	Open in IMG/M
3300010397\|Ga0134124_10939901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	873	Open in IMG/M
3300010399\|Ga0134127_10371370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1404	Open in IMG/M
3300010399\|Ga0134127_10737342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1029	Open in IMG/M
3300010400\|Ga0134122_10894989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	858	Open in IMG/M
3300010400\|Ga0134122_13271108	Not Available	509	Open in IMG/M
3300010403\|Ga0134123_11537531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	711	Open in IMG/M
3300012476\|Ga0157344_1000885	Not Available	1296	Open in IMG/M
3300012951\|Ga0164300_10163992	Not Available	1055	Open in IMG/M
3300012955\|Ga0164298_10662706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	726	Open in IMG/M
3300012957\|Ga0164303_10199326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1106	Open in IMG/M
3300012958\|Ga0164299_10226227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1101	Open in IMG/M
3300012958\|Ga0164299_11078094	Not Available	598	Open in IMG/M
3300012960\|Ga0164301_10357269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1007	Open in IMG/M
3300012960\|Ga0164301_10953609	Not Available	670	Open in IMG/M
3300012960\|Ga0164301_11903670	Not Available	503	Open in IMG/M
3300012961\|Ga0164302_10180034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1278	Open in IMG/M
3300012961\|Ga0164302_11180621	Not Available	610	Open in IMG/M
3300012984\|Ga0164309_11831225	Not Available	521	Open in IMG/M
3300012988\|Ga0164306_10824520	Not Available	749	Open in IMG/M
3300012989\|Ga0164305_10180550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. WDL1	1464	Open in IMG/M
3300013102\|Ga0157371_10160871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1603	Open in IMG/M
3300014326\|Ga0157380_13339551	Not Available	513	Open in IMG/M
3300014969\|Ga0157376_11396488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	732	Open in IMG/M
3300015371\|Ga0132258_10899013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2235	Open in IMG/M
3300015373\|Ga0132257_100373857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1727	Open in IMG/M
3300015373\|Ga0132257_102875750	Not Available	627	Open in IMG/M
3300015374\|Ga0132255_103668898	Not Available	653	Open in IMG/M
3300019361\|Ga0173482_10540811	Not Available	574	Open in IMG/M
3300021445\|Ga0182009_10673959	Not Available	558	Open in IMG/M
3300024323\|Ga0247666_1063022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	743	Open in IMG/M
3300025915\|Ga0207693_10350755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer → Ktedonobacter racemifer DSM 44963	1155	Open in IMG/M
3300025917\|Ga0207660_10788631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	775	Open in IMG/M
3300025921\|Ga0207652_10083753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2793	Open in IMG/M
3300025927\|Ga0207687_10443275	Not Available	1076	Open in IMG/M
3300025927\|Ga0207687_10630320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	906	Open in IMG/M
3300025935\|Ga0207709_10412277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1035	Open in IMG/M
3300025940\|Ga0207691_10779326	Not Available	804	Open in IMG/M
3300025944\|Ga0207661_10084937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2623	Open in IMG/M
3300026041\|Ga0207639_11768149	Not Available	579	Open in IMG/M
3300026121\|Ga0207683_10329645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1399	Open in IMG/M
3300026142\|Ga0207698_10882478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	901	Open in IMG/M
3300026300\|Ga0209027_1010429	All Organisms → cellular organisms → Bacteria	3508	Open in IMG/M
3300027310\|Ga0207983_1001009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2959	Open in IMG/M
3300027821\|Ga0209811_10008740	All Organisms → cellular organisms → Bacteria	3256	Open in IMG/M
3300027909\|Ga0209382_11586539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	648	Open in IMG/M
3300028072\|Ga0247675_1010271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer → Ktedonobacter racemifer DSM 44963	1307	Open in IMG/M
3300028379\|Ga0268266_11525596	Not Available	644	Open in IMG/M
3300031996\|Ga0308176_10014968	All Organisms → cellular organisms → Bacteria	5613	Open in IMG/M
3300032013\|Ga0310906_10225555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer → Ktedonobacter racemifer DSM 44963	1154	Open in IMG/M
3300034817\|Ga0373948_0201148	Not Available	520	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.54%
Host-Associated	Host-Associated	32.46%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.54%
Plants	Host-Associated → Plants	32.46%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.40%
Roots	Host-Associated → Plants → Roots	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.37%
Loam	Environmental → Terrestrial → Soil → Loam	20.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.04%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.14%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.51%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.75%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.04%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.51%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.51%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.28%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.53%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	8.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	7.02%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.14%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.39%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.51%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.51%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.51%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.51%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.63%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.88%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002915	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300027310	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028072	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK16	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1078378212	3300000956	Soil	VTTGWDTPQARRCECGGAECDAVVYMTWEEQDRTDHHVPQHWAIAPGHVPRGGVRWRVIEETDRFVIVEIDEHHSED*
JGI10216J12902_1096477292	3300000956	Soil	MRQTLSEVTTGWETPKVRRCECGAADCDAVIYMTWDEQDRADHVAHRWAIARGHTPRGGARWRVVEETDRFVIVEIDEQESSST*
C688J35102_1178673571	3300002568	Soil	MSGWKFPRTRRCECGAVGCDAVIHMTWDEQDRADHTPKRWAIAPGHTPHGGVRWRVIEETDRFVIVEVEETEA*
C688J35102_1194041922	3300002568	Soil	YTPSLMRQTPSEMATGWETPQARRCECGAADCEAVIFMTWDEQDRADHVPQRWTIARGHTPHGGARWRVVEETDRFVIVEIDEQEASPT*
JGI25387J43893_10473001	3300002915	Grasslands Soil	MATGWETPQARRCECGAADCEAVIFMTWDEQDRADHVPQRWTIARGHTPHGGARWRVVEETDRFVIVEIDEQEASPT*
Ga0063454_1000039664	3300004081	Soil	MRRCECGAKDCDAVVYMTWEEQDRADHVGQRWAIARGHTPRGGVRWRVIEETDRFVIVEIDEEEAPLI*
Ga0063455_1000031464	3300004153	Soil	MRRCECGAKDCDAVVYMTGEEQDRADHVGQRWAIARGHTPRGGVRWRVIEETDRFVIVEIDEEEAPLI*
Ga0062590_1021723711	3300004157	Soil	MRQAVSEVTTGWETPRARRCECGAADCEAVIYMTWEEQDRADHVPQRWTIVPGHTPRGSARWRVVEETDRFLIVEIDEQ*
Ga0062592_1008650931	3300004480	Soil	MATGWETPQARRCECGAADCEAVIFMTWDEQDRADHVPQRWTIARGHTPHGGARWRVVEETDRFVIVEIDEQETSPT*
Ga0062594_1013376752	3300005093	Soil	MRQAVPEVTTGWETPRARRCECGAADCEAVVYMTWDEQDRADHVPQRWAIAPGHTPRGGAPWRVVEETDRFLIVEIDAH*
Ga0070683_1000826722	3300005329	Corn Rhizosphere	MLAPATSEVRPAGDAASCSEVATGWETPQARRCECGAADCDAVIHMTWEEQDRADHVPHRWTIAPGHTPRGAARWRAIEETDRFVTVEIDEEEPSPA*
Ga0068869_1010637772	3300005334	Miscanthus Rhizosphere	MSTGWETPRARHCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQGGSPA*
Ga0070682_1001132462	3300005337	Corn Rhizosphere	MSTGWETPQARRCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPCGAARWRVIEETDRFVIVEIDEQGRSPAQ*
Ga0070692_111278111	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VVGSAGVADAADSFQVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAIAPGHIPRGGARWRVVEETDRFVIVEIDEQEPWSA*
Ga0070671_1000529091	3300005355	Switchgrass Rhizosphere	MRQAVPEVTTGWETPRARRCECGAADCEAVVYMTWDEQDRADHVPQRWAIAPGHTPRGGAPWRVVEETDRFLIVEIDEH*
Ga0070674_1008018632	3300005356	Miscanthus Rhizosphere	MSTGWETPQARRCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQGGSPA*
Ga0070688_1001162471	3300005365	Switchgrass Rhizosphere	MRQAVPEVTTGWETPRARRCECGAADCEAVVYMTWDEQDRADHVPQRWAIAPGHTPRGGAPWRVVEETDRFLIVE
Ga0070659_1011663251	3300005366	Corn Rhizosphere	APAVSLCRASSNLETATTRTERHEVVGSAGVADAANSFRVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWTIAPGHIPRGGARWRVVEETDRFLIVEIDEQEPSPA*
Ga0070709_111400561	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	AANSFRVATGWETPQVRRCECGAADCDAVIYMTWDEQDRADHVPQRWTIARGHIPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0070710_103253171	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSPEQTALQRRTGSVVGSAALANAANSFRVATGWETPQVRRCECGAADCDAVIYMTWDEQDRADHVPQRWTIARGHIPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0070711_1005660153	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	NSFRVATGWETPQVRRCECGAADCDAVIYMTWDEQDRADHVPQRWTIARGHIPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0070705_1004049871	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VVGSAGVADAANSFRVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWTIAPGHIPRGGARWRVVEET
Ga0070700_1009659622	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MSPEAAAPAVSLCRASSNLETATTRTERYEVVGSAGVADAANSFRVATGRETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWTIAPGHIPRGGARWRVVEETDRFLIVEIDEQEPSPA*
Ga0070700_1010142731	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MSTGWETPRARHCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQGPSPA*
Ga0070694_1011489031	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VVGSAGVADAADSFQVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWTIAPGHIPRGGARWRVVEETDRFVIVEIDEQEPSPT*
Ga0070663_1015650772	3300005455	Corn Rhizosphere	MSTGWETPQARRCECGAADCDAVIHMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQG
Ga0070678_1001681623	3300005456	Miscanthus Rhizosphere	MSTGWETPQARRCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPRGGAKWRVIEETDRFVIVEIDEQGRSPA*
Ga0073909_102740532	3300005526	Surface Soil	VVGSAGVADAANSFRVATGRETPRARRCECGAAECDAVIYMKWDEQDRADHVPSHWAIAPGHIPRGAARWRVVEETDRFVIVEIDEQEPSPA*
Ga0073909_105724791	3300005526	Surface Soil	MTTGWETPQARRCECGAADCEAVIFMTWDEQDRTDHVQQRWTIARGHTPLGGARWRVVEETDRFVIV
Ga0070679_1003057622	3300005530	Corn Rhizosphere	MSTGWETPRARHCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQGRSPA*
Ga0070696_1015295562	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSTGWETPQARRCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPCGAARWRVIEETDRFVIVEIDEQRPSPVQ*
Ga0070693_1000666593	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MSTGWETPRARHCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQRPSPVQ*
Ga0068854_1005090472	3300005578	Corn Rhizosphere	MTEFGHEALRRRRCECGAADCDAVIEMTWAEQDRADHVDGRWAIHPEHTPRGGRRWSVVEQTDRYVIVEVEEEPPS*
Ga0068852_1015716072	3300005616	Corn Rhizosphere	RNVTRGGRASCVLMLASSNLETATTRTERHEVVGSAGVADAADSFQVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWTIAPGHIPRGGARWRVVEETDRFLIVEIDEQEPSPA*
Ga0068859_1028309312	3300005617	Switchgrass Rhizosphere	MRQAVPEVTTGWETPRARRCECGAADCEAVVYMTWDEQDRADHVPQRWAIAPGHTPRGGAPWRVVEETDRFLIVEIDA
Ga0075368_102614921	3300006042	Populus Endosphere	MATGWETPQARRCECGAADCEAVILMTWDEQDRADHVPQRWTIARGHTPRGGARWRVVEETDRFVIVEIDEQETSPT*
Ga0075417_102235011	3300006049	Populus Rhizosphere	TPSLMRQTPSEMATGWETPQARRCECGAADCEAVILMTWDEQDRADHVPQRWTIARGHTPRGGARWRVVEETDRFVIVEIDEQETSPT*
Ga0070712_1003787642	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VVGSAALANAANSFRVATGWETPQVRRCECGAADCDAVIYMTWDEQDRADHVPQRWTIARGHIPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0074055_114557082	3300006573	Soil	VVGSAGVADAANSFRVATGRETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAIAPGHTPRGGARWRVVEETDRFVIVEIDEQE
Ga0074059_100257662	3300006578	Soil	VVGSAGVADAANSFRVATGRETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAIAPGHTPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0079222_101989232	3300006755	Agricultural Soil	MSGWETPRARRCECGAADCDAVIHMTWDEQDRADHTPKCWAIAPGHTVRGGVRWRVIEETDRFVIVEVEETEA*
Ga0079222_103297532	3300006755	Agricultural Soil	VTSGWETPRARRCECGAADCDAVIYMTWEEQDRADHVPRRWAIARGHTPRGGARWRVIEETDRFVTVEIDEEEPSPG*
Ga0079222_111485492	3300006755	Agricultural Soil	PSEMATGRETPQARRCECGAADCEAVILMTWDEQDRADHVPQRWTIARGHTPRGGARWRVVEETDRFVIVEIDEQEPSPT*
Ga0079220_100536153	3300006806	Agricultural Soil	MSTGWETPRARHCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQGASPA*
Ga0079220_108554041	3300006806	Agricultural Soil	MSGWESPRARRCECGAADCDAVIHMTWDEQDRADHTPRCWAIAPGHTVRGGVRWRVIEETDRFVIVEVEETEA*
Ga0079220_116741542	3300006806	Agricultural Soil	MRQAVSDVTTGWDTPRARRCECGAADCEAVVYMTWDEQDRADHVPQRWAIAPGHTPRGGSQWRVVEETDRF
Ga0075425_1012889972	3300006854	Populus Rhizosphere	VATGWDTPRARRCECGAADCDAVVHMTWDEQDRADPEPRRWAIAPGHTPRGGRRWRVVEETDRFVIVEVDEHEPSSA*
Ga0075425_1031759241	3300006854	Populus Rhizosphere	FSVRTGSAVGSAALADAANSFRVATGWETPQVRRCECGAADCDAVIYMTWDEQDRADHVPQRWTIVRGHIPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0074063_101257852	3300006953	Soil	VVGSTGVADAANSFRVATGRETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAIAPGHTPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0079219_102166092	3300006954	Agricultural Soil	MSTGWETPQARRCECGAADCDAVIHMTWEEQDKADHVPDRWTIARGHTPRGSANWRVIEETDRFVIVEIDEQGRSPA*
Ga0079219_107730061	3300006954	Agricultural Soil	MSGWTTPRARRCECGAADCDAVIHMTWEEQDRTDHAPERWAIAPGHTPLGGASWRVIEETERFVIVEIEETDV*
Ga0105245_108356732	3300009098	Miscanthus Rhizosphere	VGGSAGVADAANSFRVATGRETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWTIAPGHIPRGGARWRVVEETDRFLIVEIDEQEPSPA*
Ga0105245_112305941	3300009098	Miscanthus Rhizosphere	LTSGWETPQPRRCECGAAECDALIYMTWGEQDRADHTPRRWVVAAGHTPRGGVRWRVIEETDRFVIVEVEEANA*
Ga0105243_113778972	3300009148	Miscanthus Rhizosphere	VVGSAGVADAANSFRVATGRETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAIAPGHIPRGGARWRVVEETDRFLIVEIDEQEPSPA*
Ga0105242_118179752	3300009176	Miscanthus Rhizosphere	VVVSAGVADAANSFRVATGRETPRARRCECGAAECNAVIYMKWDEQDRADHVPRRWTIAPGHIPRGGARWRVVEETDRFLIVEIDEQEPSPA*
Ga0105248_102639342	3300009177	Switchgrass Rhizosphere	LTSGWETPQPRRCECGAEECEALIYMTWGEQDRADHTPRRWVVAAGHTPRGGVRWRVIEETDRFVIVEVEEANA*
Ga0126307_105224392	3300009789	Serpentine Soil	MDALRTRRCECGDADCTATIDMTWAEQDRADHVDGRWAISPSHTPRGGASWRVIEKSDRYLIVEVDEAAD*
Ga0126310_108736212	3300010044	Serpentine Soil	VNRIGLDALRTRRCECGAKECDAVIEMTWLEQDRADHVDGRWAIHPDHTPRGGRRWSVIEKTERFAIVEVEEEPVG*
Ga0126310_109645042	3300010044	Serpentine Soil	VGFDALRSRRCECGAADCNAVIEMTWAEQDRADHVERRWTLHPEHEPQGGQRWTVVEQTDRYVIVDVDEEPTG*
Ga0134125_103844782	3300010371	Terrestrial Soil	MSTGWETPQARRCECGAADCDAVIHMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQGRSPA*
Ga0134128_100527005	3300010373	Terrestrial Soil	MSTGWETPRARHCECGAADCDAVIHMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQGGSPA*
Ga0134128_111834831	3300010373	Terrestrial Soil	VVGSAGVADAANSFRVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWTIAPGHIPRGGARWRVVEETDRFLIVEIDEQEPSPA*
Ga0105239_111536252	3300010375	Corn Rhizosphere	VVGSTGVADAADSFQVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWTIAPGHIPRGGARWRVVEETDRFLIVEIDEQEPSPA*
Ga0134126_103667243	3300010396	Terrestrial Soil	RCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQGGSPA*
Ga0134124_109399012	3300010397	Terrestrial Soil	MSTGWETPQARRCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQRPSPVQ*
Ga0134127_103713703	3300010399	Terrestrial Soil	MSTGWETPQARRCECGAADCDAVIHMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQGGSPA*
Ga0134127_107373422	3300010399	Terrestrial Soil	VVGSAGVADAANSFRVATGRETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWTIAPGHIPRGGARWRVVEETDRFLIVEIDEQEPSPA*
Ga0134122_108949892	3300010400	Terrestrial Soil	MSTGWETPQARRCECGAADCDAVIHMTWEEQDKADHVPDRWTIARGHTPRGGAKWRVIEETDRFVIVEIDEQGRSPAQ*
Ga0134122_132711082	3300010400	Terrestrial Soil	YEVVGSAGVVDAANSFRVATGRETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWTIAPGHIPRGGARWRVVEETDRFLIVEIDEQEPSPA*
Ga0134123_115375311	3300010403	Terrestrial Soil	AANSFRVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAIAPGHIPRGGARWRVVEETDRFVIVEIDEQEPSSA*
Ga0157344_10008853	3300012476	Arabidopsis Rhizosphere	VATGWETPQVRRCECGAADCDAVIYMTWDEQDRADHVPQRWTIVRGHIPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0164300_101639922	3300012951	Soil	MPASSNLETATTRTERHEVVGSAGVADAADSFQVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAIAPGHIPRGAARWRVVEETDRFVIVEIDEQEPSPA*
Ga0164298_106627061	3300012955	Soil	VVGSAGVADAANSFRVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAIAPGHIPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0164303_101993262	3300012957	Soil	VEVVGSAAVADAANSFRVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAIAPGHTPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0164299_102262271	3300012958	Soil	VEVVGSAAVADAANSFRVATGWDTPRARRCECGAAECDAVIYMEWDEQDRAEHVPRRWAIALGHVPRGGARWRV
Ga0164299_110780941	3300012958	Soil	MPASSNLETATTRTERHEVVGSAGVADAADSFQVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAIAPGHIPRGGARWRVVEETDRFVIVEIDEQEHSPA*
Ga0164301_103572692	3300012960	Soil	VEVVGSAAVADAANSFRVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAVAPGHTPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0164301_109536091	3300012960	Soil	RRCECGAADCDAVIHMTWDEQDRADHASKCWAIAPGHTVRGGVRWRVIEETDRFVIVEVEETEA*
Ga0164301_119036701	3300012960	Soil	ADRMSGWETRRPRRCECGAADCDAVIHMTWEEQDRADHTPKCWAIAPGHTVRGGASWRVVEETDRFVIVEVEETEP*
Ga0164302_101800343	3300012961	Soil	VEVVGSAAVADAANSFRVATGWDTPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAIAPGHVPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0164302_111806211	3300012961	Soil	LLKMTTGWETPQARRCECGAADCETVIFMTWDEQDRADHVPQRWTIARGHTPHGGARWRVVEETERFVIVEIDEQEPSPT*
Ga0164309_118312251	3300012984	Soil	MTTGWETPQARRCECGAADCEAVIFMTWEEQDRADHVPQRWTIARGHTPHGGARWRVVEETDRFVIVEIDEQEPSPT*
Ga0164306_108245202	3300012988	Soil	MPASSNLETATTRTERHEVVGSAGVADAADSFQVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAVAPGHTPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0164305_101805501	3300012989	Soil	VEVVGSAAVADAANSFRVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAIAPGHIPRGGASWRVVEETDRFVTVE
Ga0157371_101608713	3300013102	Corn Rhizosphere	MSTGWETPQARRCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPRGGAKWRVIEETDRFVIVEIDEQGRSPAQ*
Ga0157380_133395511	3300014326	Switchgrass Rhizosphere	VVGSAGVADAANSFRVATGRETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWTIAPGHIPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0157376_113964882	3300014969	Miscanthus Rhizosphere	MSTGWETPRARHCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPCGAARWRVIEETDRFVIVEIDEQRPSPVQ*
Ga0132258_108990131	3300015371	Arabidopsis Rhizosphere	RRCECGAADCDAVIYMTWDEQDRADHVPQRWTIARGHIPRGGARWRVVEETDRFVIVEIDEQEPSPA*
Ga0132257_1003738573	3300015373	Arabidopsis Rhizosphere	VATGWETPQVRRCECGAADCDAVIYMTWDEQDRADHVPQRWTIARGHIPRGGARWRVVEETDRFVIVEIDEQDPSPA*
Ga0132257_1028757502	3300015373	Arabidopsis Rhizosphere	RRARAELAQRSGWNNPQRRGCECGAADCEAVVYMTWDEQDRADHTPPGTPIRWTVAPGHIPRGGKLCIIEETDRFVIVEIEEHETAT*
Ga0132255_1036688982	3300015374	Arabidopsis Rhizosphere	MPLSPALAANSSEVATGWETPQVRRCECGAAECDVVIFMTWDEQDRADHVPQRWTIARGHTPPGGPGWRVVEETDRFVIVEVDEPEPSPA*
Ga0173482_105408111	3300019361	Soil	MAAGWETPQVRRCECGAADCDAVIFMTWDEQDRADHVPQRWTIARGHTPHGGAGWRVVEETDRFVIVEIDEP
Ga0182009_106739591	3300021445	Soil	RRQGSMRQAVPEVTTGWETPRARRCECGAADCEAVVYMTWDEQDRADHVPQRWAIAPGHTPRGGAPWRVVEETDRFLIVEIDAH
Ga0247666_10630221	3300024323	Soil	GGTADAANSFRVATGWETPQVRRCECGAADCDAIIYMTWDEQDRADHVPQHWTIARGHIPRGGARWRVVEETDRFVIVEIDEQEPSPA
Ga0207693_103507553	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSPEQTALQRRTGSVVGSAALANAANSFRVATGWETPQVRRCECGAADCDAVIYMTWDEQDRADHVPQRWTIARGHIPRGGARWRVVEETDRFVIVEIDEQEPSPA
Ga0207660_107886312	3300025917	Corn Rhizosphere	MSTGWETPRARHCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQGGSPA
Ga0207652_100837533	3300025921	Corn Rhizosphere	MSTGWETPRARHCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQGRSPA
Ga0207687_104432751	3300025927	Miscanthus Rhizosphere	DALRKRRCECGAADCAAVIEMTWAEQDRADHVDGRWAIHPEHTPRGGRRWSVVEETDRYVIVEVEEQPPS
Ga0207687_106303202	3300025927	Miscanthus Rhizosphere	GGSAGVADAANSFRVATGRETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWTIAPGHIPRGGARWRVVEETDRFLIVEIDEQEPSPA
Ga0207709_104122772	3300025935	Miscanthus Rhizosphere	MSTGWETPQARRCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQGGSPA
Ga0207691_107793262	3300025940	Miscanthus Rhizosphere	MRQAVPEVTTGWETPRARRCECGAADCEAVVYMTWDEQDRADHVPQRWAIAPGHTPRGGAPWRVVEETDRFLIVEIDAH
Ga0207661_100849373	3300025944	Corn Rhizosphere	MLAPATSEVRPAGDAASCSEVATGWETPQARRCECGAADCDAVIHMTWEEQDRADHVPHRWTIAPGHTPRGAARWRAIEETDRFVTVEIDEEEPSPA
Ga0207639_117681492	3300026041	Corn Rhizosphere	MSTGWETPQARRCECGAADCDAVIYMTWEEQDKADHVPDRWTLARGHTPCGAARWRVIEETDRFVIVEIDEQRPSPVQ
Ga0207683_103296452	3300026121	Miscanthus Rhizosphere	MSTGWETPQARRCECGAADCDAVIYMTWEEQDKADHVPDRWTIARGHTPRGGASWRVIEETDRFVIVEIDEQRPSPVQ
Ga0207698_108824782	3300026142	Corn Rhizosphere	MSPEAAAPAVSLCRASSNLETATTRTERHEVVGSAGVADAADSFQVATGWETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWTIAPGHIPRGGARWRVVEETDRFLIVEIDEQEPSPA
Ga0209027_10104291	3300026300	Grasslands Soil	MATGWETPQARRCECGAADCEAVIFMTWDEQDRADHVPQRWTIARGHTPHGGARWRVVEETDRFVIVEIDEQEASPT
Ga0207983_10010091	3300027310	Soil	TGRETPRARRCECGAAECDAVIYMKWDEQDRADHVPRRWAIAPGHTPRGGARWRVVEETDRFVIVEIDEQEPSPA
Ga0209811_100087402	3300027821	Surface Soil	VVGSAGVADAANSFRVATGRETPRARRCECGAAECDAVIYMKWDEQDRADHVPSHWAIAPGHIPRGAARWRVVEETDRFVIVEIDEQEPSPA
Ga0209382_115865392	3300027909	Populus Rhizosphere	WETPQARRCECGAADCEAVILMTWDEQDRADHVPQRWTIARGHTPRGGARWRVVEETDRFVIVEIDEQETSPT
Ga0247675_10102713	3300028072	Soil	MSLEQTMLQRSDRERGRFGGTADAANSFRVATGWETPQVRRCECGAADCDAIIYMTWDEQDRADHVPQHWTIARGHIPRGGARWRVVEETDRFVIVEIDEQEPSPA
Ga0268266_115255963	3300028379	Switchgrass Rhizosphere	MRQAVPEVTTGWETPRARRCECGAADCEAVVYMTWDEQDRADHVPQRWAIAPGHTPRGGAPWRVVEETDRFLIVEIDEH
Ga0308176_100149683	3300031996	Soil	MRQAVSDMATGWETPRPRRCECGAADCDAVIHMTWEEQDRADHVPHRWTIAPGHTPRGGARWRVIEETDRFLTVEIDEEEPSSA
Ga0310906_102255553	3300032013	Soil	GTADAANSFRVATGWETPQVRRCECGAADCDAIIYMTWDEQDRADHVPQHWTIARGHIPRGGARWRVVEETDRFVIVEIDEQEPSPA
Ga0373948_0201148_83_361	3300034817	Rhizosphere Soil	VVGSAALANAANSFRVATGWETRQVRRCECGAADCDAVIYMTWDEQDRADHVPQRWTIARGHIPRGGARWRVVEETDRFVIVEIDEQEPSPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081621

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences