Metagenome / Metatranscriptome Family F081516

Basic Information
Family ID	F081516
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	41 residues
Representative Sequence	VHLALLSTGEDRAKAVVDWTWAGFTHERSGRIQVDASER
Number of Associated Samples	100
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.59 %
% of genes near scaffold ends (potentially truncated)	90.35 %
% of genes from short scaffolds (< 2000 bps)	85.09 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Most Common Taxonomy
Group	Bacteria (74.561 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.035 % of family members)
Environment Ontology (ENVO)	Unclassified (32.456 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.228 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.30% β-sheet: 0.00% Coil/Unstructured: 59.70%
Feature Viewer

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Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF02781	G6PD_C	19.30
PF00479	G6PD_N	19.30
PF00664	ABC_membrane	14.91
PF01654	Cyt_bd_oxida_I	9.65
PF01263	Aldose_epim	5.26
PF00171	Aldedh	4.39
PF07077	DUF1345	2.63
PF00999	Na_H_Exchanger	1.75
PF02574	S-methyl_trans	0.88
PF01758	SBF	0.88
PF00294	PfkB	0.88
PF00582	Usp	0.88
PF01551	Peptidase_M23	0.88
PF00312	Ribosomal_S15	0.88
PF00571	CBS	0.88
PF00732	GMC_oxred_N	0.88
PF00834	Ribul_P_3_epim	0.88
PF14742	GDE_N_bis	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	38.60
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	9.65
COG0676	D-hexose-6-phosphate mutarotase	Carbohydrate transport and metabolism [G]	5.26
COG2017	Galactose mutarotase or related enzyme	Carbohydrate transport and metabolism [G]	5.26
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	4.39
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	4.39
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	4.39
COG4291	Uncharacterized membrane protein	Function unknown [S]	2.63
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	1.75
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	1.75
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	1.75
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	1.75
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	1.75
COG0036	Pentose-5-phosphate-3-epimerase	Carbohydrate transport and metabolism [G]	0.88
COG0184	Ribosomal protein S15P/S13E	Translation, ribosomal structure and biogenesis [J]	0.88
COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	Amino acid transport and metabolism [E]	0.88
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	0.88
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.56 %
Unclassified	root	N/A	25.44 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.56 %
Unclassified	root	N/A	25.44 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.56 %
Unclassified	root	N/A	25.44 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	60.53 %
Unclassified	root	N/A	25.44 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.75 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	52.63 %
Unclassified	root	N/A	25.44 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5.26 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.75 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.75 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	42.11 %
Unclassified	root	N/A	25.44 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5.26 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1.75 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.75 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	30.70 %
Unclassified	root	N/A	25.44 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5.26 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	4.39 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	1.75 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.75 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1.75 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.70 %
Unclassified	root	N/A	25.44 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5.26 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.75 %
Peptococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae	1.75 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.75 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.88 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.88 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	0.88 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.88 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.88 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.70 %
Unclassified	root	N/A	25.44 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5.26 %
Desulfotomaculum	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfotomaculum	1.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.75 %
Hamadaea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Hamadaea	0.88 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.88 %
Rhizocola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola	0.88 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.88 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Terracoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Terracoccus	0.88 %
Cryobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.70 %
Unclassified	root	N/A	25.44 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5.26 %
Desulfotomaculum	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfotomaculum	1.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.75 %
Rhizocola hellebori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola → Rhizocola hellebori	0.88 %
unclassified Hamadaea	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Hamadaea → unclassified Hamadaea	0.88 %
Cryobacterium arcticum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium → Cryobacterium arcticum	0.88 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.88 %
Terracoccus luteus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Terracoccus → Terracoccus luteus	0.88 %
Cellulomonas hominis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas hominis	0.88 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.70 %
Unclassified	root	N/A	25.44 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5.26 %
Desulfotomaculum	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfotomaculum	1.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.75 %
Hamadaea sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Hamadaea → unclassified Hamadaea → Hamadaea sp.	0.88 %
Arthrobacter sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	0.88 %
Rhizocola hellebori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola → Rhizocola hellebori	0.88 %
Cryobacterium arcticum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium → Cryobacterium arcticum	0.88 %
Terracoccus luteus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Terracoccus → Terracoccus luteus	0.88 %
Cellulomonas hominis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas hominis	0.88 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725002\|GPICC_F5MS3JC01EGXYQ	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10310881	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300000550\|F24TB_10000178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfotomaculum	3237	Open in IMG/M
3300000955\|JGI1027J12803_101252334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	634	Open in IMG/M
3300000956\|JGI10216J12902_103058282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	930	Open in IMG/M
3300001431\|F14TB_100796511	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1736	Open in IMG/M
3300004081\|Ga0063454_100152885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1225	Open in IMG/M
3300004114\|Ga0062593_101730636	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300004803\|Ga0058862_10120549	All Organisms → cellular organisms → Bacteria	2040	Open in IMG/M
3300005332\|Ga0066388_107285285	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005345\|Ga0070692_11058830	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300005577\|Ga0068857_100819294	Not Available	889	Open in IMG/M
3300005577\|Ga0068857_101740562	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300005841\|Ga0068863_100136187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfotomaculum	2346	Open in IMG/M
3300005842\|Ga0068858_100648654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1026	Open in IMG/M
3300006038\|Ga0075365_10246128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1256	Open in IMG/M
3300006196\|Ga0075422_10188622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	842	Open in IMG/M
3300006577\|Ga0074050_12057709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1032	Open in IMG/M
3300006845\|Ga0075421_102623234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	522	Open in IMG/M
3300006846\|Ga0075430_100655663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	865	Open in IMG/M
3300006846\|Ga0075430_101707747	Not Available	517	Open in IMG/M
3300006847\|Ga0075431_100162212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	2298	Open in IMG/M
3300006880\|Ga0075429_100142732	All Organisms → cellular organisms → Bacteria	2096	Open in IMG/M
3300009098\|Ga0105245_11599086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	703	Open in IMG/M
3300009098\|Ga0105245_11710893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas hominis	681	Open in IMG/M
3300009098\|Ga0105245_12105982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	618	Open in IMG/M
3300009100\|Ga0075418_13040029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300009137\|Ga0066709_102588999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	680	Open in IMG/M
3300009137\|Ga0066709_103058406	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300009147\|Ga0114129_13414970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300009148\|Ga0105243_13054295	Not Available	507	Open in IMG/M
3300009156\|Ga0111538_11050261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1030	Open in IMG/M
3300009156\|Ga0111538_12645371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	629	Open in IMG/M
3300009157\|Ga0105092_10455897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	731	Open in IMG/M
3300009177\|Ga0105248_11521100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	758	Open in IMG/M
3300009817\|Ga0105062_1011730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1390	Open in IMG/M
3300009820\|Ga0105085_1063530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	682	Open in IMG/M
3300009837\|Ga0105058_1120261	Not Available	625	Open in IMG/M
3300010048\|Ga0126373_11025269	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300010048\|Ga0126373_12903177	Not Available	535	Open in IMG/M
3300010359\|Ga0126376_12343554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	580	Open in IMG/M
3300010359\|Ga0126376_13008626	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300010373\|Ga0134128_11465759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	751	Open in IMG/M
3300010399\|Ga0134127_11393432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	772	Open in IMG/M
3300010400\|Ga0134122_13401457	Not Available	501	Open in IMG/M
3300011000\|Ga0138513_100034411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	745	Open in IMG/M
3300012198\|Ga0137364_10836813	Not Available	695	Open in IMG/M
3300012285\|Ga0137370_10816723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300012285\|Ga0137370_10870522	Not Available	558	Open in IMG/M
3300012360\|Ga0137375_10713332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	817	Open in IMG/M
3300012901\|Ga0157288_10081726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	836	Open in IMG/M
3300012908\|Ga0157286_10471712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola → Rhizocola hellebori	503	Open in IMG/M
3300012915\|Ga0157302_10006558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2687	Open in IMG/M
3300013100\|Ga0157373_11420206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528	Open in IMG/M
3300013296\|Ga0157374_10624777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1088	Open in IMG/M
3300013307\|Ga0157372_10061670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4200	Open in IMG/M
3300013308\|Ga0157375_10839653	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1066	Open in IMG/M
3300014325\|Ga0163163_11771107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	678	Open in IMG/M
3300014968\|Ga0157379_10977143	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300015371\|Ga0132258_13801231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1028	Open in IMG/M
3300018053\|Ga0184626_10275007	Not Available	702	Open in IMG/M
3300018074\|Ga0184640_10322658	Not Available	701	Open in IMG/M
3300018076\|Ga0184609_10559210	Not Available	516	Open in IMG/M
3300018077\|Ga0184633_10170805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1126	Open in IMG/M
3300018078\|Ga0184612_10212652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1003	Open in IMG/M
3300018081\|Ga0184625_10019585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3218	Open in IMG/M
3300018081\|Ga0184625_10644950	Not Available	514	Open in IMG/M
3300018432\|Ga0190275_10673688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1089	Open in IMG/M
3300018466\|Ga0190268_10586659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	785	Open in IMG/M
3300018469\|Ga0190270_12370913	Not Available	592	Open in IMG/M
3300018469\|Ga0190270_12541832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
3300018469\|Ga0190270_13442641	Not Available	502	Open in IMG/M
3300020020\|Ga0193738_1065698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1075	Open in IMG/M
3300021073\|Ga0210378_10032154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2091	Open in IMG/M
3300021478\|Ga0210402_10824868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	853	Open in IMG/M
3300022756\|Ga0222622_10226182	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1255	Open in IMG/M
3300022880\|Ga0247792_1016298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1199	Open in IMG/M
3300025327\|Ga0209751_10818918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	724	Open in IMG/M
3300025913\|Ga0207695_10102692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	2852	Open in IMG/M
3300025924\|Ga0207694_11258035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	626	Open in IMG/M
3300025934\|Ga0207686_11550350	Not Available	547	Open in IMG/M
3300026118\|Ga0207675_101075023	Not Available	824	Open in IMG/M
3300027561\|Ga0209887_1004748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3860	Open in IMG/M
3300027775\|Ga0209177_10170266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	754	Open in IMG/M
3300027909\|Ga0209382_10338878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1687	Open in IMG/M
3300027909\|Ga0209382_11596778	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300027909\|Ga0209382_11784006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	600	Open in IMG/M
3300028589\|Ga0247818_10215294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1264	Open in IMG/M
3300028592\|Ga0247822_10547111	Not Available	921	Open in IMG/M
3300028710\|Ga0307322_10151613	Not Available	617	Open in IMG/M
3300028796\|Ga0307287_10147929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	892	Open in IMG/M
3300028803\|Ga0307281_10261782	Not Available	637	Open in IMG/M
3300028875\|Ga0307289_10034181	Not Available	2009	Open in IMG/M
3300028876\|Ga0307286_10180201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Hamadaea → unclassified Hamadaea → Hamadaea sp.	763	Open in IMG/M
3300030336\|Ga0247826_10710451	Not Available	781	Open in IMG/M
3300030619\|Ga0268386_10155635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1739	Open in IMG/M
3300031681\|Ga0318572_10638513	Not Available	634	Open in IMG/M
3300031740\|Ga0307468_100887841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	771	Open in IMG/M
3300031771\|Ga0318546_11347245	Not Available	501	Open in IMG/M
3300031852\|Ga0307410_10337690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1200	Open in IMG/M
3300031858\|Ga0310892_11282768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium → Cryobacterium arcticum	524	Open in IMG/M
3300031860\|Ga0318495_10062918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1650	Open in IMG/M
3300031903\|Ga0307407_10799135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	718	Open in IMG/M
3300031908\|Ga0310900_10777147	Not Available	773	Open in IMG/M
3300031910\|Ga0306923_12247414	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300032205\|Ga0307472_101081833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	757	Open in IMG/M
3300032770\|Ga0335085_10314915	All Organisms → cellular organisms → Bacteria	1848	Open in IMG/M
3300033550\|Ga0247829_10840559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	764	Open in IMG/M
3300034176\|Ga0364931_0042004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Terracoccus → Terracoccus luteus	1370	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.79%
Host-Associated	Host-Associated	34.21%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.14%
Plants	Host-Associated → Plants	33.33%
Aquatic	Environmental → Aquatic	9.65%
Human	Host-Associated → Human	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.56%
Sediment	Environmental → Aquatic → Sediment	7.02%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.02%
Freshwater	Environmental → Aquatic → Freshwater	1.75%
Roots	Host-Associated → Plants → Roots	1.75%
Marine	Environmental → Aquatic → Marine	0.88%
Floodplain	Environmental → Terrestrial → Floodplain	0.88%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.88%
Digestive System	Host-Associated → Human → Digestive System	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	24.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.02%
Loam	Environmental → Terrestrial → Soil → Loam	5.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.26%
Sand	Environmental → Terrestrial → Soil → Sand	3.51%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.75%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.88%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.88%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.88%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.88%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.88%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.88%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	24.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.02%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.26%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.26%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.51%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.63%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.75%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.88%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.88%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.88%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.88%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.88%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.04%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.40%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.39%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.51%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	3.51%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.88%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.88%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.88%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.88%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.88%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.88%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725002	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031652	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-40	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081516

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICC_01140510	2067725002	Soil	ALLSTGEDRAKAVVDWAWAGFTHERFGRISVRTDAD
ICChiseqgaiiFebDRAFT_103108811	3300000363	Soil	AWLAWGAVHLALLSTGEDRAKAMLDWTWAGFSQERPGRISVRTDPP*
F24TB_100001781	3300000550	Soil	TVHLALLSTGEDRAKAVVDWTWAGFTHERSGRIQVDETER*
JGI1027J12803_1012523342	3300000955	Soil	LLSTGEDRAKAMIDWSWAGVTHERPGRISVQTDEK*
JGI10216J12902_1030582821	3300000956	Soil	VHLALLSTGEDRAKALVNWTWSGFTHERAARISIDA*
F14TB_1007965112	3300001431	Soil	HLALLSTGEDRAKAVVDWTWAGFTHERAARITVET*
Ga0063454_1001528852	3300004081	Soil	ALLSTGEDRAKAMLNWTWAGFSHERPGRISVDTRKPEEVIR*
Ga0062593_1017306362	3300004114	Soil	VAEPTRQTANGAVHLALLSTGEDRAKALVDWTWAGFSHERPGRITVRTDQD*
Ga0063356_1062849302	3300004463	Arabidopsis Thaliana Rhizosphere	AWGAVHLALLSTGEDRAKAMTDWTWEEFTKERPNRIHVQEPIVQSG*
Ga0058862_101205491	3300004803	Host-Associated	SAALAWGAVHLALLSTGEDRAKAVVDWTWAGFTHERSARITVPT*
Ga0066388_1072852852	3300005332	Tropical Forest Soil	AWLAWGAVHLALLSTGEDRAKAAVDWTWSGFTHERSGRISVRTDPS*
Ga0070692_110588301	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	HLALLSTGEDRAKALIDWTWAGFSHDRPARITVRTDERDAG*
Ga0068857_1008192941	3300005577	Corn Rhizosphere	VHLALLSTGEDRAKAVVDWTWAGFTHERSGRIRVDASER*
Ga0068857_1017405621	3300005577	Corn Rhizosphere	VHLALLSTGEDRAKALIDWTWAGFSHDRPARITVRTDERDAG*
Ga0068863_1001361873	3300005841	Switchgrass Rhizosphere	LALLSTGEDRAKAVVDWTWAGFTHERSGRIRVDASER*
Ga0068858_1006486542	3300005842	Switchgrass Rhizosphere	STGEDRAKAMIDWTWAGFSHERAGRISVKTEDAQPAAH*
Ga0075365_102461281	3300006038	Populus Endosphere	GAVHLALLSTGEDRAKAVVDWTWSGFSHERSGRISVRTDKP*
Ga0075422_101886222	3300006196	Populus Rhizosphere	LALLSTGEDRAKALVNWTWSGFTHERAARISVEA*
Ga0074050_120577092	3300006577	Soil	AVHLALLSTGEDRAKAVVNWTWAGFSHERAGRITVSADEE*
Ga0075421_1026232342	3300006845	Populus Rhizosphere	AVHLALLSTGEDRAKAVVDWTWSGFSHERSGRISVRTDKP*
Ga0075430_1006556632	3300006846	Populus Rhizosphere	LLSTGEDRAKAVVDWTWAGFTHERPGRISVRTERDQD*
Ga0075430_1017077471	3300006846	Populus Rhizosphere	HLALLSTGEDRAKAVVDWTWAGFTHERSGRIQVDETER*
Ga0075431_1001622121	3300006847	Populus Rhizosphere	TLLSTGEDRAKAVVDWTWAGFTHERAGRISVRTDQD*
Ga0075429_1001427321	3300006880	Populus Rhizosphere	AVHLALLSTGEDRARAVVDWTWAGFTHDRAGRIVVDESGD*
Ga0105245_115990862	3300009098	Miscanthus Rhizosphere	AVHLALLSTGEDRAKALIDWTWAGFSHERPARITVRDERDAG*
Ga0105245_117108931	3300009098	Miscanthus Rhizosphere	MTGTTAALAWGAVHLSLLSTGEDRGKAVVDWTWAGFTHERAQRMTVRTDRD*
Ga0105245_121059821	3300009098	Miscanthus Rhizosphere	LLSTGEDRAKAVVDWTWAGFSHERPGRISVDTTE*
Ga0075418_130400291	3300009100	Populus Rhizosphere	AVHLALLSTGEDRAKAVVDWAWAGFTHERSGRISVRTDAD*
Ga0066709_1025889992	3300009137	Grasslands Soil	WLSWGAVHLALLSTGEDRAKAVIDWTWARFTHERSARITVRTVTK*
Ga0066709_1030584062	3300009137	Grasslands Soil	GKAAWVAGGAVQLALLSTGEERAKAVIDWTWAVSTHERAGRITVRTDTK*
Ga0114129_134149702	3300009147	Populus Rhizosphere	LLSTGEDRAKAVVDWTWAGFTHERAGRISVRTDQP*
Ga0105243_130542952	3300009148	Miscanthus Rhizosphere	LSTGEDRAKAMIDWSWAGFTHDRPGRISVQTDEK*
Ga0111538_110502611	3300009156	Populus Rhizosphere	WLAWGAVHLTLLSTGEDRSKAMTDWTWGEFTDRRADRISMRGAE*
Ga0111538_126453712	3300009156	Populus Rhizosphere	AWGAVHLALLSTGEDRAKAMVDWTWEEFTKERPNRISIQHESIEVG*
Ga0105092_104558971	3300009157	Freshwater Sediment	HLALLSTGEDRAKALVDWTWAGFTHDRPGRITVRTDQD*
Ga0105248_115211002	3300009177	Switchgrass Rhizosphere	LAWGAVHLALLSTGEDRAKAVIDWTWAGFSHDRSARIDVRTDKP*
Ga0105062_10117302	3300009817	Groundwater Sand	AWGTVHLALLSTGEDRARAVVDWTWAGFTHERSGRIQVDATER*
Ga0105085_10635302	3300009820	Groundwater Sand	LSTGEDRAKAIVDWTWAGFTHERSARITVSTDDT*
Ga0105058_11202612	3300009837	Groundwater Sand	LLSTGEDRAKAVVDWTWAGFTHERAGRIQVDASER*
Ga0126373_110252691	3300010048	Tropical Forest Soil	LSTGEDRAKAIVDWTWAVSTHERAGRITVRTDTK*
Ga0126373_129031771	3300010048	Tropical Forest Soil	LAWGAVHLALLSTGEDRAKAVIDWSWAGFTHERADRITVRAGAQ*
Ga0126376_123435541	3300010359	Tropical Forest Soil	VAFLGWGAVHLALLSTGEDRTKAVIDWVWGGFTHERSARISVRT*
Ga0126376_130086262	3300010359	Tropical Forest Soil	VHLALLSTGEDRAKAVIDWSWAGFTHERTARITVRTDAR*
Ga0134128_114657592	3300010373	Terrestrial Soil	AALAWGAVHLALLSTGEDRAKAVVDWTWAGFTHERSARITVPT*
Ga0134127_113934322	3300010399	Terrestrial Soil	LLSTGEDRAKAMIDWTWAGFSHERPGRISVDTKDSQPAAR*
Ga0134122_134014572	3300010400	Terrestrial Soil	AWGAVHLALLSTGEDRAKAVVDWTGAGFTHDRASRISIDA*
Ga0138513_1000344112	3300011000	Soil	GTTAWLAWGTVHLALLSTGEDRAKAVVDWTWAGFTHERSGRIQVDETER*
Ga0137364_108368132	3300012198	Vadose Zone Soil	LSTGEDRAKAVVDWTWAGFTRDRSARIAVGAAPQDRK*
Ga0137370_108167231	3300012285	Vadose Zone Soil	KAASLAWGAVHLSLLSTGEDRAKAVVDWTWAGFTHERPGRITVRSEEE*
Ga0137370_108705222	3300012285	Vadose Zone Soil	IHLALLSTGEDRAKAMIDWSWAGFTHDRPGRISVQTDEK*
Ga0137375_107133322	3300012360	Vadose Zone Soil	ASLAWGAVRLALLSTGEDRAKAVVDWTWAGFTHERAGRISVRTDDD*
Ga0157288_100817262	3300012901	Soil	VHLALLSTGEDRAKALIDWTWAGFSHERPARITVRTDERDAG*
Ga0157286_104717121	3300012908	Soil	FLAWGAVHLALLSTGEDRAKALINWTWSGFTHERAARISVEA*
Ga0157302_100065581	3300012915	Soil	TVHLALLSTGEDRAKALVDWTWAGFTHERPGRITVRTQEEAD*
Ga0157373_114202062	3300013100	Corn Rhizosphere	LLSTGEDRAKALIDWTWAGFSHDRPARITVRTDERDAG*
Ga0157374_106247772	3300013296	Miscanthus Rhizosphere	LALLSTGEDRAKAMVDWTWSGFTHERAGRISVPASELAREAHR*
Ga0157372_100616705	3300013307	Corn Rhizosphere	GAVHLALLSTGEDRAKAVVDWTWAGFTHERSARITVPT*
Ga0157375_108396532	3300013308	Miscanthus Rhizosphere	ALLSTGEDRAKALIDWTWAGFSHDRPARITVRTDERDAG*
Ga0163163_117711071	3300014325	Switchgrass Rhizosphere	AFLAWGAVHLALLSTGEDRAKALVNWTWSGFTHERAARISVEA*
Ga0157379_109771432	3300014968	Switchgrass Rhizosphere	MKGKAAFLAWGAVHLALLSTGEDRAKALIEWTWAGFSHERSARFTVRTDERASR*
Ga0173483_107520672	3300015077	Soil	WLAWGAVHLALLSTGEDRAKAMTDWTWEEFTKERPNRIHVQEPIVQSG*
Ga0132258_138012313	3300015371	Arabidopsis Rhizosphere	VHLALLSTGEDRAKAMINWTWSGFTHERAARISVET*
Ga0184626_102750071	3300018053	Groundwater Sediment	LLSTGEDRARAVVDWTWAGFTHERAGRIQVDETER
Ga0184640_103226581	3300018074	Groundwater Sediment	HLALLSTGEDRAKAMVNWTWAGFTHERSGRITVKT
Ga0184609_105592101	3300018076	Groundwater Sediment	HLSLLSTGEDRARAVVDWTWAGFTHERAGRIQVDETER
Ga0184633_101708051	3300018077	Groundwater Sediment	TTAWLAWGTVHLALLSTGEDRAKAVVDWTWAGFTHERSGRIQVDETER
Ga0184612_102126522	3300018078	Groundwater Sediment	GTTAWLAWGTVHLALLSTGEDRAKAVVDWTWAGFTHERSGRIQVDETER
Ga0184625_100195855	3300018081	Groundwater Sediment	WGSVHLALLSTGEDRAKAVVDWTWAGLTHERGARITVET
Ga0184625_106449502	3300018081	Groundwater Sediment	GKSAFLAWGAVHLALLSTGEDRSKAVMDWTWAGFTHERSGRITVKT
Ga0190275_106736881	3300018432	Soil	LALLSTGEDRAKAVVAWTWAGFTHERPGRITVKADEGR
Ga0190268_105866592	3300018466	Soil	AWLAWGAVHLALLSTGEDRAKAIVDWTWAGFTHERGARISVEA
Ga0190270_123709132	3300018469	Soil	WLAWGTVHLSLLSTGEDRARAVVDWTWAGFTHERSGRIQVDETER
Ga0190270_125418322	3300018469	Soil	LAWGTVHLALLSTGEDRAKAMVEWSWAGFTHERAGRITVRTDT
Ga0190270_134426411	3300018469	Soil	TAWLAWGTVHLALLSTGEDRAKAVVDWTWAGFTHERSGRIQVDATER
Ga0193738_10656982	3300020020	Soil	LTGTAAWLAWGTVHLTLLSTGEDRARAVVDWTWAGFTHERAGRIQVDETER
Ga0210378_100321543	3300021073	Groundwater Sediment	HLALLSTGEDRAKAVVDWTWAGFTHERSGRIQVDETER
Ga0210402_108248682	3300021478	Soil	LALLSTGEDRAKAVIDWTWAGFTHERPNRITVHTDVHEQ
Ga0222622_102261822	3300022756	Groundwater Sediment	MLAWGSVYLALLSTGEGRAKAVVEWTWAGFTHERSARISVEA
Ga0247792_10162981	3300022880	Soil	GTVHLALLSTGEDRAKALVDWTWAGFTHERPGRITVRTQEEAD
Ga0209751_108189181	3300025327	Soil	LLATGEDRAKAMVEWTWSGFSHERSARITVKTDEK
Ga0207695_101026921	3300025913	Corn Rhizosphere	LAWGAVHLALLSTGEDRAKAVVDWTWAGFTHERSARITVPT
Ga0207694_112580351	3300025924	Corn Rhizosphere	TGEDRAKAMIDWTWAGFSHERAGRISVKTEDAQPAAH
Ga0207686_115503501	3300025934	Miscanthus Rhizosphere	HLALLSTGEDRAKALLNWTWAGFTHERSGRITVES
Ga0207675_1010750231	3300026118	Switchgrass Rhizosphere	LAWGSVHLALLSTGEDRAKTVLNWTWAGFTHERSGRITVES
Ga0207683_115263572	3300026121	Miscanthus Rhizosphere	LTLLSAWEDRTKAMVDWTWSGFSHERPGRILVGDKEK
Ga0209887_10047484	3300027561	Groundwater Sand	LLSTGEDRAKAVVDWTWAGFTHERSGRIQVDASER
Ga0209177_101702662	3300027775	Agricultural Soil	WGAVHLALRSTGEDRAKAVVDWTWAGFTHERSARITVPT
Ga0209382_103388781	3300027909	Populus Rhizosphere	LALLSTGEDRAKAVVDWTWAGFTHERGGRISVRTDQP
Ga0209382_115967782	3300027909	Populus Rhizosphere	WGAVHLALLSTGEDRTKAVLDWTWAGFTRERGSRIVVGDKED
Ga0209382_117840062	3300027909	Populus Rhizosphere	GRTAWLAWGAVHLALLSTGEDRAKAAVDWTWAGFSHERSGRIHVRTDEP
Ga0247818_102152941	3300028589	Soil	HLALLSTGEDRAKAMIDWTWAGFSHERPGRISVDTKDSQPAAR
Ga0247822_105471111	3300028592	Soil	LAWGAVHLALLSTGEDRAKSIVNWTWAGFTHERAGRMTVATDET
Ga0307322_101516132	3300028710	Soil	ALLSTGEDRAKAMIDWSWAGFTHDRPGRISVQTDEK
Ga0307287_101479291	3300028796	Soil	AWLAWGTVHLALLSTGEDRAKAVVDWTWAGFTHERSGRIQVDETER
Ga0307281_102617821	3300028803	Soil	ALLSTGEDRAKAVVNWTWAGFTHERSGRIRVDASER
Ga0307289_100341813	3300028875	Soil	ALLSTGEDRAKAVVDWTWAGFTHERSGRIRVDASER
Ga0307286_101802012	3300028876	Soil	MLASGSVYLALLSTGEGRAKAVVEWTWAGFTHERSARISVEA
Ga0247826_107104512	3300030336	Soil	VHLALLSTGEDRAKAVVDWTWAGFTHERSGRIQVDASER
Ga0268386_101556351	3300030619	Soil	LLSTGEDRAKAVVDWTWAGFTHERAGRISVRTDED
Ga0315553_103068402	3300031652	Salt Marsh Sediment	GLTMTGAKASLAWGAVHLVLLSTGEDRAKAVVNWTWAGLTHERPARISVQTEETREREVA
Ga0318572_106385132	3300031681	Soil	AWGSVHLALLSTGEDRAKAVIDWAWAVTTHERSTRITVRTSPK
Ga0307468_1008878411	3300031740	Hardwood Forest Soil	TVHLALLSTGEDRAKAVVNWTWAGFTHERAGRIRVDTSER
Ga0318546_113472453	3300031771	Soil	LTMRGKSAWLAWGAVHLALLSTGEDRAKAVVDWTWAVSTHERAGRITVRTDTK
Ga0307410_103376901	3300031852	Rhizosphere	AVHLALLSTGEDRAKAVVDWTWAGFTHERPGRISVRTDQVERD
Ga0310892_112827682	3300031858	Soil	VHLALLSTGEDRAKALVNWTWSGFTHERAARISVEA
Ga0318495_100629183	3300031860	Soil	LSTGEDRAKAVIDWTWAGFTHERSNRISVQTDDDKRSES
Ga0307407_107991352	3300031903	Rhizosphere	LALLSTGEDRAKAVVDWTWAGFTHERPGRISVRTDQVERD
Ga0310900_107771471	3300031908	Soil	LALLSTGEDRAKAVVDWTWAGFTHERSGRIRVDASER
Ga0306923_122474142	3300031910	Soil	AWGAVHLALLSTGEDRAKAVVDWTWAVSTHQRAGRITVRTDEK
Ga0307472_1010818332	3300032205	Hardwood Forest Soil	HLARLSTGEDRAKAVVNWTWAGFSHERAGRITVSADEE
Ga0335085_103149151	3300032770	Soil	MRGKLAWLAWGAVHLALLSTGEDRAKAVVDWTWAVSTHERAGRITVRTDEK
Ga0335069_114395692	3300032893	Soil	HGRTMRGKSAWLAWGAVHLALLSTGEDRAKAIVDWTWTVSTHERAGRITVRTDKK
Ga0247829_108405592	3300033550	Soil	AWGTVHLALLSTGEDRAKAMVEWTWAGFTHERPGRITVRTDT
Ga0364931_0042004_16_135	3300034176	Sediment	VHLALLSTGEDRAKAIVDWTWAGFSHERSARITVRTDDT

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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