Metagenome / Metatranscriptome Family F081116

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F081116
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	123 residues
Representative Sequence	MSFRPARFTDIHRSGPPTTSDGMEWSIRVSAQPPPEWLGFFDKDAGGGDGTGGAQWTVNVQFVELRLKSSPDALPRAVEHIDERIRRANDGYRQWLNEAHRKGNERRQDEITEADRVRDLNERFKNL
Number of Associated Samples	87
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.93 %
% of genes near scaffold ends (potentially truncated)	37.72 %
% of genes from short scaffolds (< 2000 bps)	86.84 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (99.123 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (19.298 % of family members)
Environment Ontology (ENVO)	Unclassified (36.842 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.526 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.29% β-sheet: 10.97% Coil/Unstructured: 47.74%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00005	ABC_tran	18.42
PF02518	HATPase_c	12.28
PF00296	Bac_luciferase	7.02
PF00158	Sigma54_activat	5.26
PF12399	BCA_ABC_TP_C	3.51
PF00004	AAA	1.75
PF16927	HisKA_7TM	0.88
PF06386	GvpL_GvpF	0.88
PF09347	DUF1989	0.88
PF01043	SecA_PP_bind	0.88
PF13604	AAA_30	0.88
PF00293	NUDIX	0.88
PF02954	HTH_8	0.88
PF13185	GAF_2	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	7.02
COG0653	Preprotein translocase subunit SecA (ATPase, RNA helicase)	Intracellular trafficking, secretion, and vesicular transport [U]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	77.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.75 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	77.19 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	77.19 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	77.19 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	77.19 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %
Unclassified	root	N/A	0.88 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101743796	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	607	Open in IMG/M
3300004157\|Ga0062590_100001911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6686	Open in IMG/M
3300004479\|Ga0062595_100738634	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	798	Open in IMG/M
3300005180\|Ga0066685_10839539	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	619	Open in IMG/M
3300005181\|Ga0066678_10264992	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1115	Open in IMG/M
3300005328\|Ga0070676_11090665	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	603	Open in IMG/M
3300005330\|Ga0070690_100120976	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1757	Open in IMG/M
3300005347\|Ga0070668_100413412	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300005444\|Ga0070694_100184331	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300005445\|Ga0070708_100827678	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	870	Open in IMG/M
3300005457\|Ga0070662_100112528	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2076	Open in IMG/M
3300005459\|Ga0068867_101055139	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	740	Open in IMG/M
3300005526\|Ga0073909_10272835	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	759	Open in IMG/M
3300005526\|Ga0073909_10545815	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	566	Open in IMG/M
3300005545\|Ga0070695_100780904	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	764	Open in IMG/M
3300005546\|Ga0070696_100246311	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1350	Open in IMG/M
3300005547\|Ga0070693_100617420	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	785	Open in IMG/M
3300005552\|Ga0066701_10554683	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	705	Open in IMG/M
3300005569\|Ga0066705_10228387	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1175	Open in IMG/M
3300005578\|Ga0068854_101494880	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	613	Open in IMG/M
3300005615\|Ga0070702_101034637	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	652	Open in IMG/M
3300005617\|Ga0068859_100544029	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1256	Open in IMG/M
3300005718\|Ga0068866_11170864	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300005719\|Ga0068861_100440066	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1166	Open in IMG/M
3300005844\|Ga0068862_100356181	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300005844\|Ga0068862_100569018	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1084	Open in IMG/M
3300006049\|Ga0075417_10174806	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1008	Open in IMG/M
3300006049\|Ga0075417_10446035	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	645	Open in IMG/M
3300006796\|Ga0066665_10917958	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	677	Open in IMG/M
3300006846\|Ga0075430_101250643	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	611	Open in IMG/M
3300006852\|Ga0075433_10158228	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2016	Open in IMG/M
3300006852\|Ga0075433_11018856	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300006853\|Ga0075420_101500942	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	578	Open in IMG/M
3300006881\|Ga0068865_100652049	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	895	Open in IMG/M
3300006903\|Ga0075426_10030247	All Organisms → cellular organisms → Bacteria	3875	Open in IMG/M
3300006904\|Ga0075424_100252442	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300006904\|Ga0075424_101941042	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	622	Open in IMG/M
3300006914\|Ga0075436_100248395	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300009012\|Ga0066710_100586037	All Organisms → cellular organisms → Bacteria	1690	Open in IMG/M
3300009094\|Ga0111539_10204891	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2299	Open in IMG/M
3300009147\|Ga0114129_10988569	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1060	Open in IMG/M
3300009147\|Ga0114129_11086848	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300009147\|Ga0114129_12492410	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	618	Open in IMG/M
3300009156\|Ga0111538_13418096	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	551	Open in IMG/M
3300009162\|Ga0075423_10203962	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2074	Open in IMG/M
3300009162\|Ga0075423_10529077	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1241	Open in IMG/M
3300009162\|Ga0075423_10641004	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1120	Open in IMG/M
3300009162\|Ga0075423_12257465	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	592	Open in IMG/M
3300009162\|Ga0075423_12520195	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	561	Open in IMG/M
3300009174\|Ga0105241_10016377	All Organisms → cellular organisms → Bacteria → Proteobacteria	5436	Open in IMG/M
3300009176\|Ga0105242_11024830	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	835	Open in IMG/M
3300009177\|Ga0105248_10788050	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1073	Open in IMG/M
3300009553\|Ga0105249_10404501	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1396	Open in IMG/M
3300010399\|Ga0134127_10098735	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2552	Open in IMG/M
3300010401\|Ga0134121_10884220	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	866	Open in IMG/M
3300010862\|Ga0126348_1326200	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	640	Open in IMG/M
3300012685\|Ga0137397_10053483	All Organisms → cellular organisms → Bacteria	2901	Open in IMG/M
3300012922\|Ga0137394_10101492	All Organisms → cellular organisms → Bacteria	2424	Open in IMG/M
3300012922\|Ga0137394_10116710	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2257	Open in IMG/M
3300012922\|Ga0137394_11403581	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	559	Open in IMG/M
3300012925\|Ga0137419_11063216	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	673	Open in IMG/M
3300013297\|Ga0157378_10232380	All Organisms → cellular organisms → Bacteria	1758	Open in IMG/M
3300013297\|Ga0157378_10633866	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1083	Open in IMG/M
3300013308\|Ga0157375_10314875	All Organisms → cellular organisms → Bacteria	1729	Open in IMG/M
3300014166\|Ga0134079_10154715	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	928	Open in IMG/M
3300014326\|Ga0157380_10872349	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	924	Open in IMG/M
3300015371\|Ga0132258_12612884	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1261	Open in IMG/M
3300017792\|Ga0163161_10127249	All Organisms → cellular organisms → Bacteria	1919	Open in IMG/M
3300025911\|Ga0207654_10145221	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1517	Open in IMG/M
3300025923\|Ga0207681_11189453	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	640	Open in IMG/M
3300025930\|Ga0207701_10685661	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300025933\|Ga0207706_10200017	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1752	Open in IMG/M
3300025938\|Ga0207704_10202277	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1455	Open in IMG/M
3300025939\|Ga0207665_11237396	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	595	Open in IMG/M
3300025941\|Ga0207711_10543322	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1084	Open in IMG/M
3300025942\|Ga0207689_11425668	Not Available	580	Open in IMG/M
3300025961\|Ga0207712_10384147	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1176	Open in IMG/M
3300025972\|Ga0207668_10795659	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	837	Open in IMG/M
3300025981\|Ga0207640_10568062	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	956	Open in IMG/M
3300026089\|Ga0207648_10035475	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4393	Open in IMG/M
3300026524\|Ga0209690_1284124	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	523	Open in IMG/M
3300027821\|Ga0209811_10209782	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300027873\|Ga0209814_10351976	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	644	Open in IMG/M
3300027907\|Ga0207428_10145340	All Organisms → cellular organisms → Bacteria	1808	Open in IMG/M
3300028380\|Ga0268265_10767806	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	937	Open in IMG/M
3300028536\|Ga0137415_10646416	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	869	Open in IMG/M
3300028587\|Ga0247828_10075334	All Organisms → cellular organisms → Bacteria	1534	Open in IMG/M
3300030006\|Ga0299907_10257163	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1433	Open in IMG/M
3300031226\|Ga0307497_10189018	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	884	Open in IMG/M
3300031720\|Ga0307469_10358607	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1227	Open in IMG/M
3300031720\|Ga0307469_10436107	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1130	Open in IMG/M
3300031720\|Ga0307469_11204562	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	716	Open in IMG/M
3300031720\|Ga0307469_11230160	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	709	Open in IMG/M
3300031720\|Ga0307469_11740465	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	601	Open in IMG/M
3300031731\|Ga0307405_10399760	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1075	Open in IMG/M
3300031740\|Ga0307468_100523658	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	947	Open in IMG/M
3300031740\|Ga0307468_101000698	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	735	Open in IMG/M
3300031820\|Ga0307473_10203451	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1178	Open in IMG/M
3300031854\|Ga0310904_10277974	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1050	Open in IMG/M
3300031908\|Ga0310900_11701012	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	535	Open in IMG/M
3300031943\|Ga0310885_10217156	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	953	Open in IMG/M
3300032174\|Ga0307470_10171948	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1352	Open in IMG/M
3300032174\|Ga0307470_11160179	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	625	Open in IMG/M
3300032180\|Ga0307471_100153371	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2221	Open in IMG/M
3300032180\|Ga0307471_100371035	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
3300032180\|Ga0307471_100427732	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1458	Open in IMG/M
3300032180\|Ga0307471_100779328	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300032180\|Ga0307471_100962261	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1021	Open in IMG/M
3300032205\|Ga0307472_100249061	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1391	Open in IMG/M
3300032205\|Ga0307472_100376760	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1177	Open in IMG/M
3300032205\|Ga0307472_100633228	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	950	Open in IMG/M
3300032205\|Ga0307472_101283900	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	704	Open in IMG/M
3300032770\|Ga0335085_10060036	All Organisms → cellular organisms → Bacteria	5083	Open in IMG/M
3300032828\|Ga0335080_10097088	All Organisms → cellular organisms → Bacteria	3269	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	51.75%
Host-Associated	Host-Associated	48.25%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.75%
Plants	Host-Associated → Plants	48.25%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.16%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	29.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.28%
Loam	Environmental → Terrestrial → Soil → Loam	7.02%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	29.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.28%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.26%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.51%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	19.30%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.14%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.14%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.26%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.51%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.51%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.75%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.88%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010862	Boreal forest soil eukaryotic communities from Alaska, USA - C4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1017437961	3300000364	Soil	MSFRPARFTDIHRSGPPTTSDGMEWSIRVSAQPPPEWLGFFDKDAGGGDGTGGARWTVNVXFVELXLXSXPXXLPRAVEXXDERIRRANDGYRRWLTEAHRKGNERRDGEIAEADRVRDLNERFKDL*
Ga0062590_1000019113	3300004157	Soil	MSFRPARFTDIHRSGPPTTGDGVEWTMRLSAQPPDEWVALFQKDPESTAPGGAQWAVNVKFVELTIRSSPDALPRAVDDVDTRIRRANEGYRNWLTEAHRKGNERRDGEIVEADRVRDLNERFKNL*
Ga0062595_1007386342	3300004479	Soil	MSFRPARFTDIHRSGPPTTSDGMEWSIRVSAQPPPEWLGFFDKDAGGGDGTGGAQWTVNVQFVELRLKSSPDALPRAVEHIDERIRRANDGYRQWLNEAHRKGNERRQDEITEADRVRDLNERFKNL*
Ga0066685_108395391	3300005180	Soil	MSFRPARFTDIQRSGPPTTADGAEWSVRLSAQPPDEWLVLFQADARGEEAASGARWAVNVLFKELRFASSADNIPRAVEHIEQRIQRANDDYRTWLTEAHRKGDARRQGEIVEADRVRDLNERFKDL*
Ga0066678_102649923	3300005181	Soil	MSFRPARFTDIQRSGPPTTADGAEWSVRLSAQPPDEWLVLFQNDARGEEAASGARWSVKVLFKELRFASSPDNIPRAVEHIEQRIQRANDDYRSWLTEAHRKGDARRQGEIVEADRVRDLNERFKDL*
Ga0070676_110906651	3300005328	Miscanthus Rhizosphere	MSFRPASFKDIQRTGPPTTANGKEWTVRLSAAPPAEWLVLFQADARGEEAAASARWPVNVQFVEVRFDSTPENLPRALEHLGQRIVRANEDYRSWLDAAHAKGEARQHDAVVEADRVRELNERFKNL*
Ga0070690_1001209762	3300005330	Switchgrass Rhizosphere	MSFRPASFKDIQRAGPPSTGDGKEWTVRLSAAPPAEWLVLFEADARGEQAAGGTRWPVNVQFVEVRFASTPDNLPRAVDHLEQRIGRANDDYRSWLDAAHRKGEARQQDAVVEADRVRELNERFKNL*
Ga0070668_1004134121	3300005347	Switchgrass Rhizosphere	TDIHRSGPPTTSDGMEWSIRVSAQPPPEWLGFFDKDAGGGDGTGGARWTVNVQFVELRLKSSPDALPRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQDEISAADRVRDLNERFKDL*
Ga0070694_1001843312	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MSFRPANFTDLYRSGPPTTANGREWTIRISKAPPAEWLDFFQKDASADSGLWSVNVQYVELNFSATPDSLPRAVEHFDQRIHRANGEYRRWLDEAHRKGDERRQGEVVEADRVRDLNERFKNL*
Ga0070708_1008276782	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	GDGKEWTVRLSAAPPAEWLVLFEADARGEQAAGGTRWPVNVQFVEVRFASTPDNLPRAVDHLEQRIGRANDDYRSWLDAAHRKGEARQQDAVIEADRVRELNERFKNL*
Ga0070662_1001125283	3300005457	Corn Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDANGGDGTGGAQWTVNVQFVELRLKSSPETLPRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQGEITEADRVRDLNERFKDL*
Ga0068867_1010551392	3300005459	Miscanthus Rhizosphere	MSFRPASFKDIQRAGPPSTGDGKEWTVRLSAAPPAEWLVLFEADARGEQAAGSTRWPVNVQFVEIRFASTPDNLPRAVDHLEQRIGRANDDYRSWLDAAHRKGEARQQDAVIEADRVRELNERFKNL*
Ga0073909_102728353	3300005526	Surface Soil	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDAGDGDGTRWTVNVQFVELRLKSSPDTLQRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQ
Ga0073909_105458152	3300005526	Surface Soil	PASFKDIQRAGPPSTGDGKEWTVRLSAAPPAEWLVLFEADARGEQAAGGTRWPVNVQFVEIRFASTPDNLPRAVDHLEQRIGRANDDYRSWLDAAHRKGEARQQDAVIEADRVRELNERFKNL*
Ga0070695_1007809041	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MSFRPASFKDIQRAGPPSTGDGKEWTVRLSAAPPAEWLVLFEADARGEQAAGGTRWPVNVQFVEVRFASTPDNLPRAVDHLEQRIGRANDDYRSWLDAAHRKGEARQQDAV
Ga0070696_1002463112	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSFRPASFKDIQRAGPPSTGDGKEWTVRLSAAPPAEWLVLFEADARGEQAAGGTRWPVNVQFVEIRFASTPDNLPRAVDHLEQRIGRANDDYRSWLDAAHRKGEARQQDAVVEADRVRELNERFKNL*
Ga0070693_1006174202	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MSFRPASFKDIQRTGPPTTANGKEWTVRLSAAPPAEWLVLFQADARGEEAAASARWPVNVQFVEVRFASTPDNLPRAVDHLEQRIGRANDDYRSWLDAAHRKGEARQQDAVVEADRVRELNERFKNL*
Ga0066701_105546832	3300005552	Soil	MSFRPARFTDIHRSGPPTTGNGVEWMIPISAQPPQEWLELFQKDAGADSATDGGRWAVNVQFVELRFRSSADNVPRAVKNIEERIHRANDDYRRWLDEAHRKGDER
Ga0066705_102283871	3300005569	Soil	VQDLMSFRPARFTDIQRSGPPTTADGAEWSVRLSAQPPDEWLVLFQADARGEEAASGARWAVNVQFKELRFASSADNIPRAVEHIEQRIKRANDDYRSWLTEAHRKGDARRQGEIVEADRVRDLNERFKDL*
Ga0068854_1014948801	3300005578	Corn Rhizosphere	MSFRPARFTDIHRSGPPTTGDGAEWTMRLSAQPPDEWVALFQKDPGSDAPGGTQWAVNVKFVELTLRSSPDALPRAVDHVDARIRRANEGYRNWLTEAHRKGNERRDGEIVEADRVRDLNERFKNL*
Ga0070702_1010346371	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MSFRPASFKDIQRAGPPSTGDGKEWTVRLSAAPPAEWLVLFEADARGEQAAGGTRWPVNVQFVEVRFASTPDNLPRAVDHLEQRIGRANDDYRSWLDAAHRKGEARQQDAVIEADRVRELNERFKNL*
Ga0068859_1005440291	3300005617	Switchgrass Rhizosphere	MSFRPASFKDIQRAGPPSTGDGKEWTVRLSAAPPAEWLVLFEADARGEQAAGGTRWPVNVQFVEVRFASTPDNLPRAVDHLEQRIGRANDDYRSWLDAAHRKGEARQQDAVVEADRVR
Ga0068866_111708641	3300005718	Miscanthus Rhizosphere	GAEGVAMSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDAGDGDGTRWTVNVQFVELRLKSSPDALPRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQDEITAADRVRDLNERFKDL*
Ga0068861_1004400661	3300005719	Switchgrass Rhizosphere	DIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDANGGDGTGGAQWTVNVQFVELRLKSSPETLPRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQGEITEADRVRDLNERFKDL*
Ga0068862_1003561813	3300005844	Switchgrass Rhizosphere	TTSDGKEWSIRVSAQPPPEWLGFFDKDANGGDGTGGAQWTVNVQFVELRLKSSPDTLQRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQDEITEADRVRDLNERFKNL*
Ga0068862_1005690182	3300005844	Switchgrass Rhizosphere	MSFRPASFKDIQRTGPPTTANGKEWTVRLSAAPPAEWLVLFQADARGEEAAASARWPVNVQFVEVRFDSTPENLPRALEHLGQRIVRANDDYRNWLDAAHAKGEARQHDAVVEADRVRELNERFKNL*
Ga0075417_101748062	3300006049	Populus Rhizosphere	MSFRPARFTDIRRSGPPTTENGVEWTLPISAQPPQEWLDLFQRDARVDSATDLGRWAVNVQFVELRFRSSPDNVPRAVQNIDDRIHRANDGYRRWLDEAHRKGDERRQDERTEVDRVRDLNDRFKDL*
Ga0075417_104460352	3300006049	Populus Rhizosphere	MSFRPARFTDIQRSGPPTTGNGLEWTVRLSTQPPEEWVAFLQKNAGGNVSSGAGWAVNVQFVELRFSSSPDTLPRTVEHIDECIRRANDDYRSWLNEAHRKGDERRRGEITEADRVRDLNERFKNL*
Ga0066665_109179581	3300006796	Soil	IQRSGPPTTADGAEWSVRLSAQPPDEWLVLFQNDARGEEAASGARWSVKVLFKELRFASSPDNIPRAVEHIEQRIQRANDDYRSWLTEAHRKGDARRQGEIVEADRVRDLNERFKDL*
Ga0075430_1012506432	3300006846	Populus Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWIMRISAQPPDEWLAMFQKDPGADAPGGSSWAVNVQFVELKLKSSPDTLPRAVEHVDERIRRANEGYRNWLNEAHRKGNERREGEIVEADRVRDLNERFKDL*
Ga0075433_101582282	3300006852	Populus Rhizosphere	MSFRPASFKDIQRAGPPTTADGKEWTVHLSAAPPAEWLVLFEADARGEAAGGTVRWPVNVQFVEVRFASTPDNLPRAVDHLEQRIGRANDDYRSWLDAAHRKGEARQQDAVVEADRVRELNERFKNL*
Ga0075433_110188561	3300006852	Populus Rhizosphere	MSFRPARFTDIHRSGPPTTGNGVEWTIPISAQPPPEWLDLFQNDAGADSTTDGGRWAVNVQLVELRFRSSADNVPRAVKNIEQRIHRANDDYRRWLDEAHRKGDERRQDERTEADRVRDLNERFRDL*
Ga0075420_1015009422	3300006853	Populus Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWIMRISAQPPDEWLAMFQKDPGADAPGGSSWAVNVQFVELRLKSSPDTLPRAVEHVDERIRRANEGYRNWLNEAHRKGNERREGEIVEADRVRDLNERFKDL*
Ga0068865_1006520492	3300006881	Miscanthus Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDANGGDGTGGAQWTVNVQFVELRLKSSPDTLQRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQDEITAADRVRDLNERFKDL*
Ga0075426_100302473	3300006903	Populus Rhizosphere	MRHTGKLRRRHKEYTRCGCIVQGLMSFRPARFTDIQRSGPPTTADGAEWSVRLSAQPPDEWLALFQADARGEEAASGARWAVKVQFKELRFASSPDNIPRAVEHIEQRIQRANDDYRSWLTEAHRKGDARRQGEIVEADRVRDLNERFKNL*
Ga0075424_1002524421	3300006904	Populus Rhizosphere	PTTENGVEWTLPISAQPPQEWLDLFQRDARVDSATDLGRWAVNVQFVELRFRSSPDNVPRAVQNIDDRIHRANDGYRRWLDEAHRKGDERRQDERTEVDRVRDLNDRFKDL*
Ga0075424_1019410422	3300006904	Populus Rhizosphere	MSFRPARFTDIHRSGPPTTGNGVEWSIPISAQPPPEWLDLFQNDAGADSTTDGGRWAVNVQLVELRFRSSADNVPRAVKNIEQRIHRANDDYRRWLDEAHRKGDER
Ga0075436_1002483954	3300006914	Populus Rhizosphere	TRCGCIVQGLMSFRPARFTDIQRSGPPTTADGAEWSVRLSAQPPDEWLALFQADARGEEAASGARWAVKVQFKELRFASSPDNIPRAVEHIEQRIQRANDDYRSWLTEAHRKGDARRQGEIVEADRVRDLNERFKNL*
Ga0066710_1005860373	3300009012	Grasslands Soil	MSFRPARFTDIQRSGPPTTADGAEWSVRLSAQPPDEWLVLFQNDARGEEAASGARWSVKVLFKELRFASSPDNIPRAVEHIEQRIQRANDDYRSWLTEAHRKGDARRQGEIVEADRVRDLNERFKDL
Ga0111539_102048911	3300009094	Populus Rhizosphere	MSFRPASFKDIQRTGPPTTADGKEWTVHLSAAPPAEWLVLFEADARGEAAGGTVRWPVNVQFVEVRFASTPDNLPRAVDHLEQRIGRANDDYRSWLDAAHRKGEARQQDAVVEADRVRELNERFKNL*
Ga0114129_109885692	3300009147	Populus Rhizosphere	MSFRPARFTDIHRSGPPTTGNGVEWTIPISAQPPPEWLDLFQNDAGADATTDGGRWAVNVQLVELRFRSSADNVPRAVKNIEQRIHRANDDYRRWLDEAHRKGDERRQDERTEADRVRDLNERFRDL*
Ga0114129_110868482	3300009147	Populus Rhizosphere	MSFRPARFTDIKRSGPPTTGNGLEWTVRLSTQPPEEWVAFFQRDAGGTVSSGARCAVNVQFVELRFSSSPDNLPRTMEHIDERIRRTNDDYRSWLNEAHRKGDERRRGEISEADRVRDLNERFKNL*
Ga0114129_124924102	3300009147	Populus Rhizosphere	GPPTTENGVEWTLPISAQPPQEWLDLFQRDARVDAAMDVGRWAVNVQFVELRFRSSPDNVPRAVQNIDDRIHRANDGYRRWLDEAHRKGDERRQDERTEVDRVRDLNDRFKDL*
Ga0111538_134180962	3300009156	Populus Rhizosphere	VKIERPVSISITTTPNAQRSLRLSAAPPAEWLVLFQADARGEEAAASARWPVNVQFVELRFASTPDNLPRALEHLGQRIVRANDDYRSWLDAAHRKGEARQQDAVVEADRVRELNERFKNL*
Ga0075423_102039623	3300009162	Populus Rhizosphere	MSFRPARFTDIQRSGPPTTGNGLEWTVRLSTQPPEEWVAFLQKNAGGNVSSGAGWAVNVQFVEMRFSSSPDTLPRTVEHIDECIRRANDDYRSWLNEAHRKGDERRRGEITEADRVRDLNERFKNL*
Ga0075423_105290772	3300009162	Populus Rhizosphere	MSFRPARFTDIHRSGPPTTGNGVEWSIPISAQPPPEWLDLFQNDAGADSTTDGGRWAVNVQLVELRFRSSADNVPRAVKNIEQRIHRANDDYRRWLDEAHRKGDERRQDERTEADRVRDLNERFRDL*
Ga0075423_106410042	3300009162	Populus Rhizosphere	MSFRPARFTDIRRSGPPTTENGVEWTLPISAQPPQEWLDLFQRDARVDSATDLGRWAVNVQFDELRFRSSPDNVPRAVQNIDDRIHRANDGYRRWLDEAHRKGDERRQDERTEVDRVRDLNDRFKDL*
Ga0075423_122574652	3300009162	Populus Rhizosphere	MSFRPASFKDIQRAGPPTTADGKEWTVHLSAAPPAEWLVLFEADARGEAAGGTVRWPVNVQFVEVRFASTPDNLPRAVDHLEQRIGRANDDYRSWLDAAHRKGEARQQDAVVEADRVREL
Ga0075423_125201951	3300009162	Populus Rhizosphere	TSDGAEWMIRLSAVPSAEWLVLFQNDARGEEAASGARWSVNVQFIELRFASSPDNLPRAVDHLERRIRRANEDYRSWLDAAHRKGEARAQNAVVEADRVRDLNERFKNL*
Ga0105241_100163775	3300009174	Corn Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDAGDGDGTRWTVNVQFVELRLKSSPDTLQRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQDEITEADRVRDLNERFKNL*
Ga0105242_110248301	3300009176	Miscanthus Rhizosphere	MSFRPASFKDIQRAGPPSTGDGKEWTVRLSAAPPAEWLVLFEADARGEQAAGGTRWPVNVQFVEIRFASTPDNLPRAVDHLEQRIGRANDDYRSWLDAAHRKGEARQQDAVIEADRVRELNERFKNL*
Ga0105248_107880501	3300009177	Switchgrass Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDANGGDGTGGAQWTVNVQFVELRLKSSPETLPRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQGEITEADR
Ga0105249_104045013	3300009553	Switchgrass Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDAGDGDGTRWTVNVQFVELRLKSSPDTLQRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQDEITAADRVRDLNERFKDL*
Ga0134127_100987353	3300010399	Terrestrial Soil	MSFRPARFTDIHRSGPPTTGDGAEWTMRLSAQPPDEWVALFQKDPESTAPGGAQWAVNVKFVELTIRSSPDALPRAVDDVDTRIRRANEGYRNWLTEAHRKGNERRDGEIVEADRVRDLNERFKNL*
Ga0134121_108842202	3300010401	Terrestrial Soil	PTTADGKEWTVRLSAAPPAEWLVLFQADARGEEPAAGSRWPVNVQFVELRFASTPDNLPRAVDHIEQRIQRANDDYRSWLEAAHRKGEARRQDEIVEADRVRDLNERFKNL*
Ga0126348_13262001	3300010862	Boreal Forest Soil	TDIFRAGPPTTGNGLQWTIRISKAPPAEWLEFFKNDARGEGATGGGQWAVNVQYVDLGFSSSPDNLPRAVEHIDQRIRRANVDYRRWLDEAHRKGDERRQGEVTEADRVRDLNERFKDL*
Ga0137397_100534832	3300012685	Vadose Zone Soil	MSFRPASFTDIQRTGSPTTSDGAEWMIRLSAVPSAEWLVLFQDDKRGEEGASGARWAVNVQFVELRFASSPENLPRAVGHLEQRIRRANEDYRSWLDAAHRKGEARQQDAIVEADRVRDLNERFKNL*
Ga0137394_101014923	3300012922	Vadose Zone Soil	MSFRPARFTDIHRSGPPTTGNGLEWTIPISAQPPQEWLVLFQDDARGGASADNGRWAVNVQFVELRFRSSPDNVPRAVQHIEERIQRANDGYRRWLDEAHRVGDERRQDERTEADRVRDLNDRFKDL*
Ga0137394_101167103	3300012922	Vadose Zone Soil	MSFRPARFTDIHRAGPPTTSDGAEWTMRISAQPPDEWLGFFQKDAGDAAGAARWVVNVQFVELRLSCSPETLPRAVEHVDERIRQANEGYRRWLNEAHRKGNERREGEIVEADRVRDLNERFKNL*
Ga0137394_114035811	3300012922	Vadose Zone Soil	SIRVSAQPPPEWLGFFDKDAGGGDGTDGARWTVNVQFVELRLKSNPDTLPHAVEQVDERIRRANDGYRQWLNEAHRKGNERRQDEITEADRVRDLNERFKNL*
Ga0137419_110632162	3300012925	Vadose Zone Soil	MSFRPASFTDIQRTGSPTTSDGAEWMIRLSAVPSAEWLVLFQDDKRGEEGASGARWAVNVQFVELRFASSPENLPRAVGHLEQRIRRANEDYRSWLDAAHRKGEARQQDAIVQADRVRDLNERFKNL*
Ga0157378_102323802	3300013297	Miscanthus Rhizosphere	MSFRPARFTDIHRSRPPTTSDGMEWSIRVSAQPPPEWLGFFDKDANGGDGTGGAQWTVNVQFVELRLKSSPDTLQRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQGEITEADRVRDLNERFKDL*
Ga0157378_106338662	3300013297	Miscanthus Rhizosphere	MSFRPASFKDIQRTGPPTTADGKEWTVRLTAAPPAEWLVLFQADARGEEAAGSARWPVNVQFVELRFASTPDNLPRALEHLGQRIVRANEDYRTWLDAAHRKGEARQQDAVVEADRVRDLNERFKNL*
Ga0157375_103148752	3300013308	Miscanthus Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKEANGGDGTGGAQWTVNVQFVELRLKSSPETLPRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQGEITEADRVRDLNERFKDL*
Ga0134079_101547152	3300014166	Grasslands Soil	MSFRPASFKDIQRAGPPTTADGKEWTVHLSAAPPAEWLVLFQADARGEEAAASARWPVNVQFVELRFASTPDNLPRALEHLGQRIARANEDYRSWLDTAHRKGEARQQDAVVEADRVRELNERFKNL*
Ga0157380_108723492	3300014326	Switchgrass Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDANGGDGTGGAQWTVNVQFVELRLKSSPETLPRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQDEITEADRVRDLNERFKNL*
Ga0132258_126128842	3300015371	Arabidopsis Rhizosphere	MSFRPARFTDIHRSGPPTTANGVEWTMRISAQPPDEWLTIFQKDPDSEAPGGTRWAVNVQFVELKLSSSPDTLKSAVEHVDERIRRANEGYRRWLTEAHRKGNERREGEIVEADRVRDLNERFKDL*
Ga0163161_101272493	3300017792	Switchgrass Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPDEWLAMFQKDPGADAPGGSSWAVNVQFVELRLKSSPDTLQRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQDEITAADRVRDLNERFKDL
Ga0207654_101452212	3300025911	Corn Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDAGDGDGTRWTVNVQFVELRLKSSPDTLQRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQDEITEADRVRDLNERFKNL
Ga0207681_111894532	3300025923	Switchgrass Rhizosphere	RPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDANGGDGTGGAQWTVNVQFVELRLKSSPETLPRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQGEITEADRVRDLNERFKDL
Ga0207701_106856612	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDAGDGDGTRWTVNVQFVELRLKSSPDTLQRAVEQIDERIRRANDGYRQWLNEAHRKGNERREGEIVEADRVRDLNERFKDL
Ga0207706_102000171	3300025933	Corn Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDANGGDGTGGAQWTVNVQFVELRLKSSPETLPRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQGEITEADRVRDL
Ga0207704_102022772	3300025938	Miscanthus Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDANGGDGTGGAQWTVNVQFVELRLKSSPETLPRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQGEITEADRVRDLNERFKDL
Ga0207665_112373962	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MTSVQPAAPSPAKASVTRAGPPTTGDGLEWTIPISAQPPPEWLDLFQNDAGADSTTDGGRWAVNVQLVELRFRSSADNVPRAVKNIEQRIHRANDDYRRWLDEAHRKGDERRQDERTEADRVRDLNERFRDL
Ga0207711_105433223	3300025941	Switchgrass Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDANGGDGTGGAQWTVNVQFVELRLKSSPDTLQRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQGEITEADRVRDL
Ga0207689_114256681	3300025942	Miscanthus Rhizosphere	MSFRPASFKDIQRTGPPTTANGKEWTVRLSAAPPAEWLVLFQADARGEEAAASARWPVNVQFVEVRFDSTPENLPRALEHLGQRIVRANEDYRSWLDAAHAKGEARQHDAVVEADRVRELNERFKNL
Ga0207712_103841473	3300025961	Switchgrass Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDAGDGDGTRWTVNVQFVELRLKSSPDTLQRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQDEITEADR
Ga0207668_107956591	3300025972	Switchgrass Rhizosphere	TDIHRSGPPTTSDGMEWSIRVSAQPPPEWLGFFDKDAGGGDGTGGARWTVNVQFVELRLKSSPDALPRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQDEITAADRVRDLNERFKDL
Ga0207640_105680621	3300025981	Corn Rhizosphere	MSFRPASFKDIQRTGPPTTANGKEWTVHLSAAPPAEWLVLFQADARGEEAAASARWPVNVQFVEVRFDSTPENLPRALEHLGQRIVRANDDYRNWLDAAHAKGEARQHDAVV
Ga0207648_100354753	3300026089	Miscanthus Rhizosphere	MSFRPASFKDIQRAGPPSTGDGKEWTVRLSAAPPAEWLVLFEADARGEQAAGGTRWPVNVQFVEVRFASTPDNLPRAVDHLEQRIGRANDDYRSWLDAAHRKGEARQQDAVIEADRVRELNERFKSL
Ga0209690_12841242	3300026524	Soil	RPARFTDIQRSGPPTTADGAEWSVRLSAQPPDEWLVLFQNDARGEEAASGARWSVKVLFKELRFASSPDNIPRAVEHIEQRIQRANDDYRSWLTEAHRKGDARRQGEIVEADRVRDLNERFKDL
Ga0209811_102097822	3300027821	Surface Soil	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDAGDGDGTRWTVNVQFVELRLKSSPDTLQRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQDEITEAD
Ga0209814_103519761	3300027873	Populus Rhizosphere	MSFRPARFTDIQRSGPPTTGNGLEWTVRLSTQPPEEWVAFLQKNAGGNVSSGAGWAVNVQFVELRFSSSPDTLPRTVEHIDECIRRANDDYRSWLNEAHRKGDERRRGEITEADRVRDLNERFKNL
Ga0207428_101453403	3300027907	Populus Rhizosphere	MSFRPARFTDIHRSGPPTTSDGKEWIMRISAQPPDEWLAMFQKDPGADAPGGSSWAVNVQFVELRLKSSPDTLPRAVEHVDERIRRANEGYRNWLNEAHRKGNERREGEIVEADRVRDLNERFKDL
Ga0268265_107678063	3300028380	Switchgrass Rhizosphere	MSFRPASFKDIQRTGPPTTANGKEWTVRLSAAPPAEWLVLFQADARGEEAAASARWPVNVQFVEVRFDSTPENLPRALEHLGQRIVRANDDYRNWLDAAHAKGEARQHDAVVEADRVREL
Ga0137415_106464162	3300028536	Vadose Zone Soil	MSFRPASFTDIQRTGSPTTSDGAEWMIRLSAVPSAEWLVLFQDDKRGEEGASGARWAVNVQFVELRFASSPENLPRAVGHLEQRIRRANEDYRSWLDAAHRKGEARQQDAIVQADRVRDLNERFKNL
Ga0247828_100753343	3300028587	Soil	EWIMRISAQPPDEWLAMFQKDPGADAPGGSSWAVNVQFVELRLKSSPDTLPRAVEHVDERIRRANEGYRNWLNEAHRKGNERREGEIVEADRVRDLNERFKDL
Ga0299907_102571632	3300030006	Soil	MSFRPARFTDIQRSGPPITGNGLEWTVRLSTQPPEEWLAFFEKDAGGNVSSGARWAVNVQFVELRFSSSPDNLPRTVEHIDERIRRANDDYRRWLNEAHRRGDERRQGEITEADRVRDLNERFKNL
Ga0307497_101890181	3300031226	Soil	VAMSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDANGGDGTGGAQWTVNVQFVELRLKSSPETLPRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQGEITEADRVRDLNERFKDL
Ga0307469_103586071	3300031720	Hardwood Forest Soil	MSFRPATFTDIQRVGPPTTSDGAEWMIRLSAVPSAEWLVLFQNDARGEEAASGARWSVNVQFIELRFASSPDNLPRAVDHLEQRIRRANEDYRTWLDAAHRKGEAREQNAVVEADRVRDLNERFKNL
Ga0307469_104361072	3300031720	Hardwood Forest Soil	MSFRPANFTDIHRSGPPTTSDGVQWTMRLSAQPPDEWLTFFQGKPGDDPTGDTRWAVNTQFVELQLSSGPDALPQAVQLVDARIRHANEGYRRWLNEAHRKGNERRQSENTEADRVRDLNERFKDL
Ga0307469_112045621	3300031720	Hardwood Forest Soil	MSFRPARFTDIHRSGPPTTSDGKEWIMRISAQPPDEWLAMFQKDPGADAPGGSSWAVNVQFVELKLKSSPDTLPRAVEHVDERIRRANEGYRNWLNEAHRKGNERREGEIVEADRVRDLNERFKDL
Ga0307469_112301601	3300031720	Hardwood Forest Soil	SFRPARFTDIHRSGPPTTGDGVEWTIRVSARPPDEWLSFFQRDAGGSNAAGAARWAANAQFGELRLTSSPDALPRAVEQVDERIRRANDDYRKWLNEAHRKGNERRQDEIVEADRVRDLNERFKDL
Ga0307469_117404651	3300031720	Hardwood Forest Soil	MSFRPARFTDIHRSGPPTTSNGVEWTMRISAQPPDEWLALFHKDLGDDAPGGSRWAVNVKFVELQLSSSPDTLPLAVEHVDERIRRANEGYRRWLNEAHRKGNER
Ga0307405_103997602	3300031731	Rhizosphere	MSFRPARFTDIQRSGPPTTTDGQQWIIRVSAQPPDEWLTLFKDDVGGDPATGGGRWAVNAQFAELRFNSSPENLPRAVEYVEQRIERANEAYRRWLDAAHRKGEARRQGEIIEADRVRDLNERFKNL
Ga0307468_1005236583	3300031740	Hardwood Forest Soil	MSFRPARFTDIHRSGPPTTSDGMEWSIRVSAQPPPEWLGFFDKDAGGGDGTGGARWTVNVQFVELRLKSSPDALPRAVEQIDERIRRANDGYRQWLNEAHRKGNERRQDEITAADRVRDLNERFKDL
Ga0307468_1010006982	3300031740	Hardwood Forest Soil	MSFRPARFTDIHRSGPPTTGDGVEWTIRVSARPPDEWLSFFQRDAGGSNAAGAARWAANAQFGELRLTSSPDALPRAVEQVDERIRRANDDYRKWLNEAHRKGNERRQDKIVEADRVRDLNERFKDL
Ga0307473_102034512	3300031820	Hardwood Forest Soil	MSFRPATFTDIQRVGPPTTSDGAEWMIRLSAVPSAEWLVLFQNDARGEEAASGARWSVNVQFIELRFASSPDNLPRAVDHLEQRIRRANEDYRAWLDAAHRKGEAREQNAVVEADRVRELNERFKNL
Ga0310904_102779742	3300031854	Soil	VAMSFRPARFTDIHRSGPPTTSDGKEWIMRISAQPPDEWLAMFQKDPGADAPGGSSWAVNVQFVELRLKSSPDTLPRAVEHVDERIRRANEGYRNWLNEAHRKGNERREGEIVEADRVRDLNERFKDL
Ga0310900_117010121	3300031908	Soil	MSFRPARFTDIHRSGPPTTGDGVEWTMRLSAQPPDEWVALFQKDPESTAPGGAQWAVNVKFVELTIRSSPDALPRAVDDVDTRIRRANEGYRNWLTEAHRKGNERRDGEIVEADRVRDLNERFKNL
Ga0310885_102171562	3300031943	Soil	SDGKEWIMRISAQPPDEWLAMFQKDPGADAPGGSSWAVNVQFVELRLKSSPDTLPRAVEHVDERIRRANEGYRNWLNEAHRKGNERREGEIVEADRVRDLNERFKDL
Ga0307470_101719484	3300032174	Hardwood Forest Soil	MSFRPATFTDIQRVGPPTTSDGAEWMIRLSAVPSAEWLVLFQNDARGEEAASGARWSVNVQFIELRFASSPDNLPRAVDHLEQRIRRANEDYRTWLDAAHRKGEAREQNAVVEADRVRELNERFKNL
Ga0307470_111601791	3300032174	Hardwood Forest Soil	MSFRPANFTDIHRSGPPTTSDGVQWTMRLSAQPPDEWLTFFQGKPGDDPTGDTRWAVNTQFVELQLSSGPDALPQAVQLVDARIRHANEGYRRWLNEAHRKGNERRQSENTEA
Ga0307471_1001533712	3300032180	Hardwood Forest Soil	MSFRPATFTDIQRVGPPTTADGAEWMIRLSAVPSAEWLVLFQNDARGEEAASGARWSVNVQFIELRFASSPDNLPRAVDHLEQRIRRANEDYRTWLDAAHRKGEAREQNAVVEADRVRELNERFKNL
Ga0307471_1003710353	3300032180	Hardwood Forest Soil	MSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDAGGGDGIGSAQWTVNVQFVELRLKSSPDALPRAVEQIDERIRRANDGYRQWLDEAHRKGNERRQGEITEADRVRDLNERFKNL
Ga0307471_1004277323	3300032180	Hardwood Forest Soil	MSFRPARFTDIHRSGPPTTGDGVEWTIRVSARPPDEWLSFFQRDAGGSNAAGAARWAANAQFGELRLTSSPDALPRAVEQVDERIRRANDDYRKWLNEAHRKGNERRQDEIVEADRVRDLNERFKDL
Ga0307471_1007793283	3300032180	Hardwood Forest Soil	MSFRPARFTDIQRSGPPTTADGAEWSVRLSAQPPDEWLVLFQADARGEEAASGARWAVKVQFKELRFASSPDNLPRAVEHIEQRIQRANDDYRSWLTEAHRKGDARRQGEIVEADRVRDLNERFKNL
Ga0307471_1009622613	3300032180	Hardwood Forest Soil	MSFRPAHFTDIHRSGPPTTSDGVHWTMRLSAQPPDEWLTFFQGKPGDAATGDTRWAVNTQFVELQLTSGPDALPQAVELVDDRIRHANEGYRSWLNEAHRKGNERRQTENVEADRVRDLNERFKDL
Ga0307472_1002490611	3300032205	Hardwood Forest Soil	VRSLMSFRPATFTDIQRVGPPTTSDGAEWMIRLSAVPSAEWLVLFQNDARGEEAASGARWSVNVQFIELRFASSPDNLPRAVDHLEQRIRRANEDYRTWLDAAHRKGEAREQNAVVEADRVRDLNERFKNL
Ga0307472_1003767601	3300032205	Hardwood Forest Soil	EGVGMSFRPARFTDIHRSGPPTTSDGKEWSIRVSAQPPPEWLGFFDKDAGGGDGIGSAQWTVNVQFVELRLKSSPDALPRAVEQIDERIRRANDGYRQWLDEAHRKGNERRQGEITEADRVRDLNERFKNL
Ga0307472_1006332282	3300032205	Hardwood Forest Soil	SFRPARFTDIHRSGPPTTANGVEWTMRISAQPPDEWLTIFQKDPDSDAPGGTRWAVNVQFVELTLSSSPDTLKSAVEHVDERIRRANEGYRRWLTEAHRKGNERREGEIVEADRVRDLNERFKDL
Ga0307472_1012839002	3300032205	Hardwood Forest Soil	MSFRPARFTDIHRSGPPTTGDGVEWTIRVSARPPDEWLSFFQKDAGGSNAAGAARWAANAQFGELRLTSSPDALPRAVEQVDERIRRANDDYRKWLNEAHRKGNE
Ga0335085_100600363	3300032770	Soil	MSFRPATFTDIQRSGPPTTADGVEWTVRLSAAPPAEWLGFFEKDVRGEEAASGARWPVNVQFIELRFASSPENLPRAVEHLEQRIRRANDEYRNWLDAAHRKGEARRQGEIVEADRVRDLNERFKNL
Ga0335080_100970883	3300032828	Soil	MSFRPANFTDIHRSGPPSTRDGVEWTMRISAQPPDEWLTLFQKDPDSEAPGGTRWAVNVKFVELMLSSSPDTLARAVEHVDERIRRANEGYRRWLTEAHRKGNERREGEIVEADRIRDLNERFKDL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081116

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences