Metagenome / Metatranscriptome Family F080754

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F080754
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	49 residues
Representative Sequence	MCTGGGQVPGSIAEALRMTGAGLDYLNSPAAAELPAAAAGEVLAALG
Number of Associated Samples	71
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.58 %
% of genes near scaffold ends (potentially truncated)	98.25 %
% of genes from short scaffolds (< 2000 bps)	97.37 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (71.930 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (51.754 % of family members)
Environment Ontology (ENVO)	Unclassified (67.544 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (53.509 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.33% β-sheet: 0.00% Coil/Unstructured: 58.67%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00106	adh_short	14.04
PF13561	adh_short_C2	4.39
PF02585	PIG-L	3.51
PF01063	Aminotran_4	3.51
PF00196	GerE	2.63
PF11387	DUF2795	1.75
PF00534	Glycos_transf_1	1.75
PF01522	Polysacc_deac_1	0.88
PF12697	Abhydrolase_6	0.88
PF13302	Acetyltransf_3	0.88
PF02776	TPP_enzyme_N	0.88
PF02371	Transposase_20	0.88
PF01455	HupF_HypC	0.88
PF00392	GntR	0.88
PF04264	YceI	0.88
PF01936	NYN	0.88
PF13784	Fic_N	0.88
PF13472	Lipase_GDSL_2	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	7.02
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	3.51
COG0298	Hydrogenase maturation factor HybG, HypC/HupF family	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.88
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	0.88
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.93 %
Unclassified	root	N/A	28.07 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.93 %
Unclassified	root	N/A	28.07 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.93 %
Unclassified	root	N/A	28.07 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	71.05 %
Unclassified	root	N/A	28.07 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	67.54 %
Unclassified	root	N/A	28.07 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	63.16 %
Unclassified	root	N/A	28.07 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.07 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	13.16 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	8.77 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	7.89 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.75 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.75 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.07 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	12.28 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	8.77 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	3.51 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	3.51 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.75 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.75 %
Actinopolymorphaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae	0.88 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	0.88 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.07 %
unclassified Nocardioidaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae	12.28 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	6.14 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	3.51 %
Sphaerimonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerimonospora	3.51 %
Virgisporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Virgisporangium	1.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.75 %
Actinacidiphila	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Actinacidiphila	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.88 %
Actinospica	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica	0.88 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.07 %
Nocardioidaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	12.28 %
unclassified Micromonospora	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora	6.14 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3.51 %
Sphaerimonospora thailandensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerimonospora → Sphaerimonospora thailandensis	3.51 %
Virgisporangium aurantiacum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Virgisporangium → Virgisporangium aurantiacum	1.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.75 %
Actinacidiphila oryziradicis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Actinacidiphila → Actinacidiphila oryziradicis	0.88 %
Actinospica durhamensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica durhamensis	0.88 %
Streptomyces bottropensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bottropensis	0.88 %
Actinopolymorpha pittospori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	0.88 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.07 %
Nocardioidaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	12.28 %
Micromonospora sp. ATCC 39149	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. ATCC 39149	6.14 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3.51 %
Sphaerimonospora thailandensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerimonospora → Sphaerimonospora thailandensis	3.51 %
Virgisporangium aurantiacum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Virgisporangium → Virgisporangium aurantiacum	1.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.75 %
Actinacidiphila oryziradicis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Actinacidiphila → Actinacidiphila oryziradicis	0.88 %
Actinospica durhamensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica durhamensis	0.88 %
Streptomyces bottropensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bottropensis	0.88 %
Actinopolymorpha pittospori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	0.88 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_102755416	Not Available	897	Open in IMG/M
3300005332\|Ga0066388_104170799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	737	Open in IMG/M
3300005332\|Ga0066388_105766368	Not Available	626	Open in IMG/M
3300005577\|Ga0068857_102327898	Not Available	526	Open in IMG/M
3300005764\|Ga0066903_101013296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1520	Open in IMG/M
3300005764\|Ga0066903_108858031	Not Available	510	Open in IMG/M
3300009792\|Ga0126374_10617839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	802	Open in IMG/M
3300010043\|Ga0126380_10322590	Not Available	1110	Open in IMG/M
3300010043\|Ga0126380_10804341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	770	Open in IMG/M
3300010043\|Ga0126380_11990602	Not Available	531	Open in IMG/M
3300010048\|Ga0126373_10771654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1022	Open in IMG/M
3300010048\|Ga0126373_10968576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. ATCC 39149	916	Open in IMG/M
3300010048\|Ga0126373_11029954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	889	Open in IMG/M
3300010048\|Ga0126373_12472990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	579	Open in IMG/M
3300010360\|Ga0126372_10852630	Not Available	908	Open in IMG/M
3300010360\|Ga0126372_11204887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	782	Open in IMG/M
3300010361\|Ga0126378_10724768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. ATCC 39149	1106	Open in IMG/M
3300010361\|Ga0126378_12429694	Not Available	598	Open in IMG/M
3300010361\|Ga0126378_12446750	Not Available	596	Open in IMG/M
3300010366\|Ga0126379_10402561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1417	Open in IMG/M
3300010366\|Ga0126379_12123824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	663	Open in IMG/M
3300010366\|Ga0126379_12973865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	567	Open in IMG/M
3300010366\|Ga0126379_13467777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	528	Open in IMG/M
3300010376\|Ga0126381_101381918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1018	Open in IMG/M
3300010376\|Ga0126381_102763624	Not Available	701	Open in IMG/M
3300010376\|Ga0126381_103433610	Not Available	623	Open in IMG/M
3300010376\|Ga0126381_103723686	Not Available	596	Open in IMG/M
3300010398\|Ga0126383_13492635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	513	Open in IMG/M
3300010876\|Ga0126361_10309020	Not Available	1324	Open in IMG/M
3300016270\|Ga0182036_11601846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	548	Open in IMG/M
3300016294\|Ga0182041_11300060	Not Available	665	Open in IMG/M
3300016357\|Ga0182032_10820042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerimonospora → Sphaerimonospora thailandensis	787	Open in IMG/M
3300016387\|Ga0182040_10269189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1289	Open in IMG/M
3300016404\|Ga0182037_10537074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. ATCC 39149	985	Open in IMG/M
3300016404\|Ga0182037_11680601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300016422\|Ga0182039_11985483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	535	Open in IMG/M
3300017821\|Ga0187812_1261601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica durhamensis	551	Open in IMG/M
3300017926\|Ga0187807_1251589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	579	Open in IMG/M
3300017926\|Ga0187807_1298305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Actinacidiphila → Actinacidiphila oryziradicis	535	Open in IMG/M
3300017970\|Ga0187783_11261319	Not Available	532	Open in IMG/M
3300021560\|Ga0126371_12925518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	579	Open in IMG/M
3300031543\|Ga0318516_10214149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1114	Open in IMG/M
3300031543\|Ga0318516_10385597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	808	Open in IMG/M
3300031546\|Ga0318538_10102480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1479	Open in IMG/M
3300031564\|Ga0318573_10268067	All Organisms → cellular organisms → Bacteria → Terrabacteria group	912	Open in IMG/M
3300031572\|Ga0318515_10209214	Not Available	1046	Open in IMG/M
3300031640\|Ga0318555_10257863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerimonospora → Sphaerimonospora thailandensis	942	Open in IMG/M
3300031679\|Ga0318561_10506652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	665	Open in IMG/M
3300031681\|Ga0318572_10731551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	589	Open in IMG/M
3300031713\|Ga0318496_10588428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	615	Open in IMG/M
3300031723\|Ga0318493_10699552	Not Available	568	Open in IMG/M
3300031764\|Ga0318535_10070201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bottropensis	1497	Open in IMG/M
3300031765\|Ga0318554_10355321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	833	Open in IMG/M
3300031765\|Ga0318554_10771388	Not Available	538	Open in IMG/M
3300031769\|Ga0318526_10214388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	787	Open in IMG/M
3300031769\|Ga0318526_10371591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	585	Open in IMG/M
3300031770\|Ga0318521_10164832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1265	Open in IMG/M
3300031779\|Ga0318566_10132262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1234	Open in IMG/M
3300031779\|Ga0318566_10161027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerimonospora → Sphaerimonospora thailandensis	1113	Open in IMG/M
3300031779\|Ga0318566_10512247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	587	Open in IMG/M
3300031781\|Ga0318547_11083817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501	Open in IMG/M
3300031795\|Ga0318557_10379645	Not Available	649	Open in IMG/M
3300031796\|Ga0318576_10263330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. ATCC 39149	814	Open in IMG/M
3300031798\|Ga0318523_10519312	All Organisms → cellular organisms → Bacteria → Terrabacteria group	589	Open in IMG/M
3300031799\|Ga0318565_10145833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1147	Open in IMG/M
3300031799\|Ga0318565_10533895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	565	Open in IMG/M
3300031805\|Ga0318497_10796292	Not Available	530	Open in IMG/M
3300031819\|Ga0318568_10650187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	656	Open in IMG/M
3300031821\|Ga0318567_10193000	Not Available	1136	Open in IMG/M
3300031821\|Ga0318567_10460301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Virgisporangium → Virgisporangium aurantiacum	722	Open in IMG/M
3300031835\|Ga0318517_10422502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	602	Open in IMG/M
3300031835\|Ga0318517_10437227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	590	Open in IMG/M
3300031845\|Ga0318511_10433074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605	Open in IMG/M
3300031845\|Ga0318511_10449859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	593	Open in IMG/M
3300031846\|Ga0318512_10366922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	721	Open in IMG/M
3300031846\|Ga0318512_10446369	Not Available	653	Open in IMG/M
3300031846\|Ga0318512_10504870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	613	Open in IMG/M
3300031879\|Ga0306919_10988303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	644	Open in IMG/M
3300031890\|Ga0306925_10879031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. ATCC 39149	924	Open in IMG/M
3300031893\|Ga0318536_10417674	All Organisms → cellular organisms → Bacteria → Terrabacteria group	677	Open in IMG/M
3300031893\|Ga0318536_10657167	Not Available	523	Open in IMG/M
3300031896\|Ga0318551_10611710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	629	Open in IMG/M
3300031897\|Ga0318520_10947652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	543	Open in IMG/M
3300031910\|Ga0306923_10445220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1470	Open in IMG/M
3300031912\|Ga0306921_11566523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	717	Open in IMG/M
3300031912\|Ga0306921_11574848	Not Available	715	Open in IMG/M
3300031954\|Ga0306926_12037266	Not Available	644	Open in IMG/M
3300032001\|Ga0306922_11514718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	670	Open in IMG/M
3300032008\|Ga0318562_10378279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. ATCC 39149	823	Open in IMG/M
3300032025\|Ga0318507_10190501	Not Available	884	Open in IMG/M
3300032039\|Ga0318559_10116915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1193	Open in IMG/M
3300032041\|Ga0318549_10094671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1296	Open in IMG/M
3300032041\|Ga0318549_10413502	Not Available	608	Open in IMG/M
3300032044\|Ga0318558_10509563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Virgisporangium → Virgisporangium aurantiacum	601	Open in IMG/M
3300032055\|Ga0318575_10277800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	847	Open in IMG/M
3300032060\|Ga0318505_10584004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerimonospora → Sphaerimonospora thailandensis	525	Open in IMG/M
3300032064\|Ga0318510_10112750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1046	Open in IMG/M
3300032064\|Ga0318510_10499440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300032065\|Ga0318513_10176330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. ATCC 39149	1026	Open in IMG/M
3300032068\|Ga0318553_10092949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1531	Open in IMG/M
3300032068\|Ga0318553_10482032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	650	Open in IMG/M
3300032089\|Ga0318525_10695770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	517	Open in IMG/M
3300032261\|Ga0306920_101787934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	868	Open in IMG/M
3300032261\|Ga0306920_102130500	Not Available	782	Open in IMG/M
3300032261\|Ga0306920_103811261	All Organisms → cellular organisms → Bacteria → Terrabacteria group	551	Open in IMG/M
3300032261\|Ga0306920_103879788	Not Available	545	Open in IMG/M
3300033134\|Ga0335073_10008912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14069	Open in IMG/M
3300033134\|Ga0335073_10026240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	8050	Open in IMG/M
3300033289\|Ga0310914_10306630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1432	Open in IMG/M
3300033289\|Ga0310914_10711016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	901	Open in IMG/M
3300033289\|Ga0310914_10907606	Not Available	780	Open in IMG/M
3300033289\|Ga0310914_11324865	Not Available	622	Open in IMG/M
3300033290\|Ga0318519_10874731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	555	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.12%
Host-Associated	Host-Associated	0.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.49%
Aquatic	Environmental → Aquatic	2.63%
Plants	Host-Associated → Plants	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.49%
Freshwater	Environmental → Aquatic → Freshwater	2.63%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.47%
Loam	Environmental → Terrestrial → Soil → Loam	4.39%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.63%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.88%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	67.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.39%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	51.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.39%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.63%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.75%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.88%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.88%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1027554161	3300005332	Tropical Forest Soil	MCTDGGQPGSIADALRTAHAGLDYLNSPAAAELHAAAAGGVLTSL
Ga0066388_1041707993	3300005332	Tropical Forest Soil	MCTDDGRAPGGVAEALRMAHAGLDYLNSPAAAGLPAAACGPVLTALGELQAKVTA
Ga0066388_1057663681	3300005332	Tropical Forest Soil	MCTDGGQPPGTVAEALRMADAGLDYLNSPAAAGLHAAAAG
Ga0068857_1023278982	3300005577	Corn Rhizosphere	MCTSDGTPGSVAEALRAASTGLDYLNSPAAGLDGAACGQVLTALAAIQ
Ga0066903_1010132964	3300005764	Tropical Forest Soil	MCTDGDQPTGSVAEALRMAHAGLDYLNSPAAAELHAA
Ga0066903_1088580312	3300005764	Tropical Forest Soil	MCTDGGQPPGSIAEALRVAHAGLDYLNSPVASELHAAACGPVLAALGELQAK
Ga0126374_106178391	3300009792	Tropical Forest Soil	VCTGGDQVPGSIAEALRMTRAGLDYLNSPAGAELAASAAGEVLAAL
Ga0126380_103225903	3300010043	Tropical Forest Soil	MCTDGGQRPGSVAEALRLAHAGLDYLNSLAAAGLHAAAAGPVLTSLGELQ
Ga0126380_108043412	3300010043	Tropical Forest Soil	VIQQMCTGGDQVPGSIAEALRMTRAGLDYLNSPAGDQLAAPAAGEVLAALADIGA
Ga0126380_119906022	3300010043	Tropical Forest Soil	VIQQMCTDGGQPPGSDAPGGSVPGSVAEALRTAHAGLDYLNSPAAAGLHPAAAGGVLTSLGELQAKVTAAHAGFL
Ga0126373_107716542	3300010048	Tropical Forest Soil	VIWQMCTGGGQPPGSIAEALRMADAGLDYLNSPAAAELAASAAGGVLAALGELQAKVTA
Ga0126373_109685761	3300010048	Tropical Forest Soil	MCTGGDQVPGSIAGALRMAHAGLDYLNSPATAELPATAA
Ga0126373_110299541	3300010048	Tropical Forest Soil	MCTGGDQVPGSIAEALRMTRAGLDYLNSPAGVELPAPAIGEVLAAL
Ga0126373_123244612	3300010048	Tropical Forest Soil	MCGTADEPSGSAGEALRLAGAALDYLNSPAADDLPAAATGEVLAALEVLRAKLTA
Ga0126373_124729902	3300010048	Tropical Forest Soil	MCTDGEQRPGSIAEALRMAHASLDYLNSPVAAELHAAACGAVLTSLG
Ga0126372_108526302	3300010360	Tropical Forest Soil	VIQQMCTDGDQPGSIAGALRTAHAGLDYLNSPDAAGLHAAACGEVLTSLGELQAKVAAAH
Ga0126372_112048871	3300010360	Tropical Forest Soil	MCTDGGRAPGSVAEALRAAHAGLDYLNSPAAAGLP
Ga0126378_107247681	3300010361	Tropical Forest Soil	MCTDGGRAPGSVAEALRAAHAGLDYLNSPAGAGLPAAAAGDVL
Ga0126378_124296941	3300010361	Tropical Forest Soil	VIQQMCTGGDQVPGSIAEALRMTGAGLDYLNSPAAAEL
Ga0126378_124467502	3300010361	Tropical Forest Soil	VIQQMCSDGDRSPGSIAEALRMTGAGLDYLNSPAAAELHAAATGEVLAALGVISAKVTAAHAGFLRRFDA
Ga0126379_104025611	3300010366	Tropical Forest Soil	MCTGDGQLPGSIAGALRMTGAGLDYLNSPAAAELPAAAAGEVLAA
Ga0126379_121238242	3300010366	Tropical Forest Soil	MCTDGEQRPGSIAEALRMAHAGLDYLNSPVAAELHAA
Ga0126379_129738651	3300010366	Tropical Forest Soil	MCTDGDQPGSIAEALRTAHASLDYMNSPAAAELHAAAAGGVLTSLGELQ
Ga0126379_134677772	3300010366	Tropical Forest Soil	MCTGGGQLPGTVAGALRMTHAGLDYLNSLAAAELPAAACGPV
Ga0126381_1013819181	3300010376	Tropical Forest Soil	VIQQMCTGGDQVPGSIAEALRMTRAGLDYLNSPAGAELPAPATGEVLTALADIGARHTAAHAA
Ga0126381_1027636241	3300010376	Tropical Forest Soil	VIQQMCTDGSTAGSVAEALRLAHAGLDYLNSPAGAGLHAAAAGGVLTSLGE
Ga0126381_1034336101	3300010376	Tropical Forest Soil	MCSGDGQRPGSVAEALRIAHVGLDYLNSPAAAELHAAACGPV
Ga0126381_1037236862	3300010376	Tropical Forest Soil	MCTDGGQRPGTVAQALRMAHAGLDYLNSPAADLPAAACGPVLAALGELQAKVTAAHAAVL
Ga0126383_134926352	3300010398	Tropical Forest Soil	MCSGDGQRPGSVAEALRLAHASLDYLNSPATAELHAAACGPVLTSL
Ga0126361_103090202	3300010876	Boreal Forest Soil	MRTSDGTVPGRIAEALRMTGAGLDYLNSPAGADAPAMACGEVLTALGELRGKLA
Ga0182036_116018462	3300016270	Soil	MCTDGDQMPGSIAEALRMTGAGLDYLNSPAAAELPAAVAGEILS
Ga0182041_113000602	3300016294	Soil	MCTDGDQSPGSVAQALRMTHAGLDYLNSPAAAELHAAAAGGVLTSLGELQ
Ga0182032_108200422	3300016357	Soil	MCTDGDQAPGSVAQALRVAHAGLDYLNSPAAAELPAAAT
Ga0182040_102691891	3300016387	Soil	MCTDGGQRPGSIAEALRMAHAGMDYLNSPAASELPAAAAGGVLTSLGEL
Ga0182037_105370741	3300016404	Soil	MCIDGDQMPGSIAEALRMTGAGLDYLNSPAAANLHATAAGEILTALGVIGAKVTAAH
Ga0182037_116806011	3300016404	Soil	MCTDDGRVPGSIAEALRMAHAGMDYLNSPAASELPAAAAGGVLTSLGEL
Ga0182039_119854831	3300016422	Soil	MCTDGGQVPGSIAEALRMARASMDYLNSPAAAELASSAAVGVLAALGE
Ga0187812_12616012	3300017821	Freshwater Sediment	MMCTAGGSVPGSVAEALRMAGAGLDYLNSPAAELDGAACGQVLTALGVIRAKLAAAR
Ga0187807_12515892	3300017926	Freshwater Sediment	MCTGGDQVPGSIAEALRMTSASMDYLNNRAADEMPAPVCGEVLVALAEIQAKFTAAQATV
Ga0187807_12983051	3300017926	Freshwater Sediment	MCTADGQEPGSVAAALRTAHACLYYLNSPAAGDLHAAALGAVLVSLGELRAK
Ga0187783_112613191	3300017970	Tropical Peatland	MCGDDDRAPGVAARSVAEALRMAHAALDYLNSPDGAWV
Ga0126371_129255182	3300021560	Tropical Forest Soil	MCTDGITAGSVSEALLLAHASMDYLNSPAGAGLHAAATGGVLTSLGELQAKVTAAHAAFLRRFDAADAHDA
Ga0318516_102141492	3300031543	Soil	MCTDGGRRPGSTAEALRMAHAGMDYLNSPGTAELPAAAAGDVLTSLGELQAKVTAAHEESAHPGV
Ga0318516_103855971	3300031543	Soil	MCTGGGQVPGSIAEALRMTGAGLDYLNSPAAAELPAAAAGEVLAALG
Ga0318538_101024803	3300031546	Soil	MCIDGDQVPGSIAEALRMTGAGLDYLNSPAAADLH
Ga0318573_102680671	3300031564	Soil	MCITDDSAPGSVTEALRLAHASMDYLNSPAASELHAA
Ga0318515_102092141	3300031572	Soil	MCTDDGRVPGSIAEALRMAHASLDYLNSPVAAELHAAA
Ga0318555_102578631	3300031640	Soil	MCTDGDQAPGSVAQALRVAHAGLDYLNSPAAAELPAAATDGVLVSLGELQAKVTAAHAAVLR
Ga0318561_105066521	3300031679	Soil	MCTGGGQVPGSIAEALRMTGAGLDYLNSPAAAGLAASAAGEVL
Ga0318572_107315511	3300031681	Soil	MCTDGDQMPGSIAEALRMTRAGLDYLNSPAAAGLAASAAGEVLAALGVIGAKH
Ga0318496_105884281	3300031713	Soil	MCTDGDQLPGTVAGALRITHAGLDYLNSPAAAELPA
Ga0318493_106995521	3300031723	Soil	MCTDGDQPPGSVAGALRMTHAGLDYLNSPAATELHAAAVGDVLTSLGELQAKVTAAHAAFLR
Ga0318535_100702013	3300031764	Soil	MCTDDGRVPGSIAEALRMAHASLDYLNSPVAAELHAAAC
Ga0318554_103553212	3300031765	Soil	MCATGDQAPGSVADALRAAHASMDYLNGPDAAGLDPAALSGVLTSLGELQAKFTAAHAGFLRRF
Ga0318554_107713881	3300031765	Soil	MCTDGDQLPGTVAGALRITHAGLDYLNSPAAAELPAAACGPVLTALGELQAKVTAAHAAF
Ga0318526_102143881	3300031769	Soil	MSTDGDQMPGSIAEALCMTRVGLDYLNSPAAAGLAASAAGEVLA
Ga0318526_103715911	3300031769	Soil	MCTASDQVPGSIAEALRMTGAGLDYLNSPAAAELHAAGCGPVLTALGE
Ga0318521_101648323	3300031770	Soil	MCTDGDQLPGTVAGALRITHAGLDYLNSPAAAELPAAACGPVLTALGELQ
Ga0318566_101322623	3300031779	Soil	MCTDGGQPPGSFAGALRMAHAGLDYLNSPAAAELPAAACGPALAA
Ga0318566_101610272	3300031779	Soil	MCTDGGQAPGSVVQALRVAHAGLDYLNSPAAAELPAAATDGVLVSLGELQAKFTAAHAAFLRRFDAAGAH
Ga0318566_105122471	3300031779	Soil	MCTDHGQVPGSIAEALRMAHASLDYLNSPAAAELAASACGP
Ga0318547_110838172	3300031781	Soil	MCTDDGRVPGSIAEALRMAHASLDYLNSPVAAELHA
Ga0318557_103796452	3300031795	Soil	MCTDDGRVPGSIAEALRMAHASLDYLNSPVAAELHAAACGPVLSSLGELQAKV
Ga0318576_102633302	3300031796	Soil	MCIDGDQMPGSIAEALRMTGAGLDYLNSPAAANLHAT
Ga0318523_105193121	3300031798	Soil	MCTDGDQLPGTVAGALRMTHAGLDYLNSPAAAELPAAAAGEVLAALGVISAKVT
Ga0318565_101458332	3300031799	Soil	MCIDGDQVPGSIAEALRMTGAGLDYLNSPAAADLHATAAGEILTALGVIGAKVTAA
Ga0318565_105338952	3300031799	Soil	MCTASDQVPGSIAEALRMTGAGLDYLNSPAAAELHAAGCGPVLTALGELQAKVTA
Ga0318497_107962922	3300031805	Soil	VCTGQDQQGRGAPASVAEALRAAHQGLDYLNSPAGGELEAAAVGEVLRSLGELRAKFAAAHAG
Ga0318568_106501871	3300031819	Soil	MCTDGQVPGSIAEALRVTRAGLDYLNSPAAELHAAACG
Ga0318567_101930001	3300031821	Soil	MCTDDGRVPGSIAEALRMAHASLDYLNSPVAAELHAAACGPVLTSL
Ga0318567_104603011	3300031821	Soil	MCTDDGRGPGSIAEALRMAHAGLDYLNSPAATELH
Ga0318517_104225021	3300031835	Soil	MCTDGDQLPGTVAGALRMTHAGLDYLNSPAAAELPAAACGPVLSALGEL
Ga0318517_104372272	3300031835	Soil	MCIDGDQVPGSIAEALRMTGAGLDYLNSPAAADLHATAAGEILTALGVIGAKVTA
Ga0318511_104330742	3300031845	Soil	MCTDDDQAPGSVAQALRVAHAGLDYLNSPAAAELPAAAADGVLVSL
Ga0318511_104498592	3300031845	Soil	MCTDDGRGAGSIAEALRMAHASLDYLNSPAAAELAASACGPVLS
Ga0318512_103669221	3300031846	Soil	MCTDGQVPGSIAEALRVTRAGLDYLNSPAAELHAAACGPVLSALGELQAKFT
Ga0318512_104463691	3300031846	Soil	MCTGGDQVPGSIAEALRMARASMDYLNSPAAAELASSAAGGVLAALGEIGAMYTAGHATF
Ga0318512_105048702	3300031846	Soil	MCTGDGQLPGTVAGALRMTHAGLDYLNSPAAAELPAAACGPVLSALG
Ga0306919_109883032	3300031879	Soil	MCTDHGQVPGSIAEALRMAHASLDYLNSPVAAELHAAACGPVLSSLGELHAKVIAAHAAVLRRFDAA
Ga0306925_108790311	3300031890	Soil	MCIDGDQVPGSIAEALRMTGAGLDYLNSPAAADLHATAAGEILTALGVI
Ga0318536_104176742	3300031893	Soil	MCITDDSAPGSVTEALRLAHASMDYLNSPAASELHAAA
Ga0318536_106571671	3300031893	Soil	MPGSIAEALRMTGAGLDYLNSPAAAELPAAVAGEILSALGVIGAKYTAAHAAFL
Ga0318551_106117101	3300031896	Soil	MCIDGDQMPGSIAEALRMTGAGLDYLNSPAAANLHATAAGEILTALGVIGAKF
Ga0318520_109476521	3300031897	Soil	MPGSIAEALRMTGAGLDYLNSPAAAELPAAVAGEIL
Ga0306923_104452201	3300031910	Soil	MCTGDAQVPGSIAGALRMTGAGLDYLNSPAAAELPAAAAGEVL
Ga0306921_115665232	3300031912	Soil	MCTDGDQAPGSIAEALRMTGAGLDYLNSPAAAELNAAACGPVLTALGELQAKFTAAHAAFLRR
Ga0306921_115748481	3300031912	Soil	MCTDHGQVPGSIAEALRMAHASLDYLNSPVAAELHAAACGPVLSSLGELHAKVIA
Ga0306926_120372662	3300031954	Soil	MCTDGDQLPGTVAGALRMTHAGLDYLNSPAAAELPAAAAGE
Ga0306922_115147181	3300032001	Soil	MCTGNDQVPGSIAGALRMAHAGLDYLNSPAAAELDAA
Ga0318562_103782792	3300032008	Soil	MCIDGDQVPGSIAEALRMTGAGLDYLNSPAAADLHATAAGEILTALGVIGAKFT
Ga0318507_101905011	3300032025	Soil	MCTDDGRVPGSIAEALRMAHASLDYLNSPVAAELHAAACGPVLSSLGELQAKVTAAHAAV
Ga0318559_101169152	3300032039	Soil	MCIDGDQMPGSIAEALRMTGAGLDYLNSPAAASSRIW
Ga0318549_100946711	3300032041	Soil	MCTDHGQVPGSIAEALRMAHASLDYLNSPVAAELHAAACGPVLSSLGEL
Ga0318549_104135021	3300032041	Soil	MCSGGDQVPGSIAGALRMAHAGLDYLNSPAASELDAAATGPVLAALGEL
Ga0318558_105095632	3300032044	Soil	MCTDDGRGPGSIAEALRMAHAGLDYLNSPAATELHAAACGPVLSSLGELQAKVTAAHAA
Ga0318575_102778002	3300032055	Soil	MCTDGDQLPGTVAGALRMTHAGLDYLNSPAAAELPAAAAGEVLAALGVI
Ga0318505_105840041	3300032060	Soil	MCTDGGQAPGSVAQALRVAHAGLDYLNSPAAAELPAAATDGVLVSLGEL
Ga0318510_101127502	3300032064	Soil	MSTDGDQMPGSIAEALCMTRVGLDYLNSPAAAGLAASAAGEVLAAL
Ga0318510_104994402	3300032064	Soil	MCTDDGRVPGSIAEALRMAHASLDYLNSPVAAELHAAACGPVLSSL
Ga0318513_101763301	3300032065	Soil	MCIDGDQMPGSIAEALRMTGAGLDYLNSPAAANLHATAAGEILTALGVI
Ga0318553_100929493	3300032068	Soil	MCTDGDQAPGSVAQALRVAHAGLDYLNSPAAAELPAAATDGVLVSL
Ga0318553_104820322	3300032068	Soil	MCTGDAQVPGSIAGALRMTGAGLDYLNSPAAAELPAAAAGEVLAALGVISAKVT
Ga0318525_106957701	3300032089	Soil	MCIDGDQVPGSIAEALRMTGAGLDYLNSPAAADLHATAAGE
Ga0306920_1017879343	3300032261	Soil	MCTGGGQVPGSIAEALRMTGAGLDYLNSPAAAGLAASAAGEVLAALG
Ga0306920_1021305003	3300032261	Soil	MCTDGGQPPGSIAGALRTAHASLDYLNSPAAAELHAAACGPVLTALGELQAKVTAAHARFLRRF
Ga0306920_1038112612	3300032261	Soil	MCTDGGQPPGSIAGALRMAHASMDYLNSPVAAELHAAACGPVLTALGELQAKVT
Ga0306920_1038797881	3300032261	Soil	MCTDGGQPPGSFAGALRMAHAGLDYLNSPAAAELPAAACGPVLAALGELQAKVTAAH
Ga0335073_1000891211	3300033134	Soil	MCGDGDAAPVSVADALRTAHAALDYLTGPAAAELPGTALGEVLVSLGELQSK
Ga0335073_100262401	3300033134	Soil	MCTADGQSPGSVAAALRIAHAALDYLNGPDAAGLPGPALGDVLVSLGELQSK
Ga0310914_103066303	3300033289	Soil	MSTDGDQMPGSIAEALCMTRVGLDYLNSPAAAGLAASAAGEVLAALGVIGAKFTA
Ga0310914_107110162	3300033289	Soil	MCTASDQVPGSIAEALRMTGAGLDYLNSPAAAELHAAGCGPVLT
Ga0310914_109076062	3300033289	Soil	MCTDGDQPPGSVAGALRMTHAGLDYLNSPAATELHAAAVGD
Ga0310914_113248651	3300033289	Soil	MCTDGGQAPGSVVQALRVAHAGLDYLNSPAAAELPAAATDGVLVSLGELQAKFTAAHAAFLRR
Ga0318519_108747311	3300033290	Soil	MCTDGQVPGSIAEALRVTRAGLDYLNSPAAELHAAACGPVLSAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080754

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences