Metagenome / Metatranscriptome Family F080574

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080574
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	66 residues
Representative Sequence	LRVLAQAFDSTGAVVGQRIGYVPGGVGGFGRAYFVVPNLPVADNYRVSVWDYTWFQAPRDPR
Number of Associated Samples	100
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.87 %
% of genes near scaffold ends (potentially truncated)	99.13 %
% of genes from short scaffolds (< 2000 bps)	91.30 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.261 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (16.522 % of family members)
Environment Ontology (ENVO)	Unclassified (24.348 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.348 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 24.44% Coil/Unstructured: 75.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF01244	Peptidase_M19	19.13
PF00496	SBP_bac_5	10.43
PF00561	Abhydrolase_1	6.09
PF03631	Virul_fac_BrkB	3.48
PF13401	AAA_22	2.61
PF00166	Cpn10	1.74
PF07366	SnoaL	1.74
PF00072	Response_reg	0.87
PF03724	META	0.87
PF13458	Peripla_BP_6	0.87
PF03083	MtN3_slv	0.87
PF07076	DUF1344	0.87
PF02321	OEP	0.87
PF02130	YbeY	0.87
PF07726	AAA_3	0.87
PF12697	Abhydrolase_6	0.87
PF07690	MFS_1	0.87
PF07311	Dodecin	0.87
PF09411	PagL	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	19.13
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	3.48
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	1.74
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.74
COG4095	Sugar transporter, SemiSWEET family, contains PQ motif	Carbohydrate transport and metabolism [G]	0.87
COG0319	ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme	Translation, ribosomal structure and biogenesis [J]	0.87
COG3187	Heat shock protein HslJ	Posttranslational modification, protein turnover, chaperones [O]	0.87
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.26 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.26 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.26 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	54.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.22 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.61 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	54.78 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.61 %
Unclassified	root	N/A	1.74 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.87 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	53.91 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	1.74 %
Unclassified	root	N/A	1.74 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.87 %
candidate division NC10	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	0.87 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.87 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	51.30 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	1.74 %
Unclassified	root	N/A	1.74 %
unclassified candidate division NC10	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10	0.87 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.87 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.87 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	51.30 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	1.74 %
Unclassified	root	N/A	1.74 %
candidate division NC10 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	0.87 %
Nitrosomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas	0.87 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.87 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	51.30 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	1.74 %
Unclassified	root	N/A	1.74 %
unclassified Nitrosomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → unclassified Nitrosomonas	0.87 %
candidate division NC10 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	0.87 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.87 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	51.30 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	1.74 %
Unclassified	root	N/A	1.74 %
Nitrosomonas sp. Nm34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → unclassified Nitrosomonas → Nitrosomonas sp. Nm34	0.87 %
candidate division NC10 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	0.87 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.87 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_101456078	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1111	Open in IMG/M
3300000559\|F14TC_102514820	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1882	Open in IMG/M
3300000787\|JGI11643J11755_11465245	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	615	Open in IMG/M
3300000956\|JGI10216J12902_102537307	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	963	Open in IMG/M
3300002562\|JGI25382J37095_10043582	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1743	Open in IMG/M
3300004268\|Ga0066398_10026774	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1022	Open in IMG/M
3300004633\|Ga0066395_10524152	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	686	Open in IMG/M
3300004633\|Ga0066395_11025314	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300005171\|Ga0066677_10505743	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300005180\|Ga0066685_10300919	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1110	Open in IMG/M
3300005186\|Ga0066676_11138015	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300005187\|Ga0066675_10063677	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2321	Open in IMG/M
3300005332\|Ga0066388_104014537	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	750	Open in IMG/M
3300005334\|Ga0068869_102121980	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	505	Open in IMG/M
3300005336\|Ga0070680_101289614	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300005355\|Ga0070671_100734144	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300005444\|Ga0070694_100932505	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	718	Open in IMG/M
3300005445\|Ga0070708_100446378	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300005471\|Ga0070698_100773492	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	904	Open in IMG/M
3300005554\|Ga0066661_10846650	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300005586\|Ga0066691_10015929	All Organisms → cellular organisms → Bacteria → Proteobacteria	3636	Open in IMG/M
3300005713\|Ga0066905_100887238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	779	Open in IMG/M
3300005713\|Ga0066905_100977347	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300005764\|Ga0066903_100720571	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	1764	Open in IMG/M
3300005764\|Ga0066903_104288075	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300006058\|Ga0075432_10031190	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1845	Open in IMG/M
3300006163\|Ga0070715_10166878	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300006194\|Ga0075427_10076627	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	601	Open in IMG/M
3300006844\|Ga0075428_100724089	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300006845\|Ga0075421_101842147	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	650	Open in IMG/M
3300006847\|Ga0075431_100901367	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	854	Open in IMG/M
3300006852\|Ga0075433_10012806	All Organisms → cellular organisms → Bacteria	6794	Open in IMG/M
3300006852\|Ga0075433_10503209	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1066	Open in IMG/M
3300006852\|Ga0075433_11725485	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	539	Open in IMG/M
3300006854\|Ga0075425_101196936	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300006903\|Ga0075426_10972949	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	641	Open in IMG/M
3300006953\|Ga0074063_11909684	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	602	Open in IMG/M
3300007076\|Ga0075435_100074065	All Organisms → cellular organisms → Bacteria	2785	Open in IMG/M
3300009038\|Ga0099829_11284338	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	605	Open in IMG/M
3300009094\|Ga0111539_11623621	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	750	Open in IMG/M
3300009100\|Ga0075418_10413979	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1442	Open in IMG/M
3300009100\|Ga0075418_11086457	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300009100\|Ga0075418_12902664	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	523	Open in IMG/M
3300009137\|Ga0066709_100835649	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1337	Open in IMG/M
3300009147\|Ga0114129_10323286	All Organisms → cellular organisms → Bacteria	2050	Open in IMG/M
3300009147\|Ga0114129_10982301	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300009162\|Ga0075423_10014547	All Organisms → cellular organisms → Bacteria → Proteobacteria	7683	Open in IMG/M
3300009792\|Ga0126374_10437949	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300009836\|Ga0105068_1016358	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1237	Open in IMG/M
3300010046\|Ga0126384_11203770	Not Available	699	Open in IMG/M
3300010047\|Ga0126382_11629819	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300010102\|Ga0127453_1015171	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	553	Open in IMG/M
3300010140\|Ga0127456_1110174	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	603	Open in IMG/M
3300010304\|Ga0134088_10337024	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	731	Open in IMG/M
3300010336\|Ga0134071_10700627	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	536	Open in IMG/M
3300010360\|Ga0126372_10433384	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300010360\|Ga0126372_11243794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → unclassified Nitrosomonas → Nitrosomonas sp. Nm34	771	Open in IMG/M
3300010362\|Ga0126377_12000424	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300010366\|Ga0126379_12146419	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	660	Open in IMG/M
3300010376\|Ga0126381_101143721	Not Available	1125	Open in IMG/M
3300010398\|Ga0126383_13686199	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	500	Open in IMG/M
3300010400\|Ga0134122_12138083	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300012202\|Ga0137363_10904905	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	749	Open in IMG/M
3300012205\|Ga0137362_11450091	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	573	Open in IMG/M
3300012211\|Ga0137377_10792542	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	880	Open in IMG/M
3300012362\|Ga0137361_10008448	All Organisms → cellular organisms → Bacteria → Proteobacteria	7191	Open in IMG/M
3300012685\|Ga0137397_10164918	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1644	Open in IMG/M
3300012917\|Ga0137395_10744786	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	709	Open in IMG/M
3300012948\|Ga0126375_11569319	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	565	Open in IMG/M
3300012984\|Ga0164309_11621868	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	554	Open in IMG/M
3300012986\|Ga0164304_11236313	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	605	Open in IMG/M
3300013102\|Ga0157371_11051167	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	623	Open in IMG/M
3300013306\|Ga0163162_12194331	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300013306\|Ga0163162_13360890	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	511	Open in IMG/M
3300016270\|Ga0182036_11093913	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300016357\|Ga0182032_11498374	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300016371\|Ga0182034_12002910	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	512	Open in IMG/M
3300017792\|Ga0163161_11760752	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	550	Open in IMG/M
3300017939\|Ga0187775_10252411	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	677	Open in IMG/M
3300017947\|Ga0187785_10410688	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	653	Open in IMG/M
3300025917\|Ga0207660_10467948	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300025931\|Ga0207644_10640777	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300025937\|Ga0207669_11572781	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	561	Open in IMG/M
3300026298\|Ga0209236_1039028	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2463	Open in IMG/M
3300026309\|Ga0209055_1216038	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300026358\|Ga0257166_1058883	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	552	Open in IMG/M
3300026536\|Ga0209058_1042239	All Organisms → cellular organisms → Bacteria	2679	Open in IMG/M
3300026536\|Ga0209058_1170443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	979	Open in IMG/M
3300026557\|Ga0179587_10865833	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	596	Open in IMG/M
3300027654\|Ga0209799_1071442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	781	Open in IMG/M
3300027907\|Ga0207428_10789856	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	675	Open in IMG/M
3300031573\|Ga0310915_10397736	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300031679\|Ga0318561_10840672	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300031713\|Ga0318496_10806707	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	517	Open in IMG/M
3300031719\|Ga0306917_10220329	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1444	Open in IMG/M
3300031720\|Ga0307469_10571096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1005	Open in IMG/M
3300031720\|Ga0307469_12346155	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300031740\|Ga0307468_101668306	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	598	Open in IMG/M
3300031778\|Ga0318498_10159663	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300031779\|Ga0318566_10582203	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	546	Open in IMG/M
3300031793\|Ga0318548_10463120	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	620	Open in IMG/M
3300031831\|Ga0318564_10435302	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	572	Open in IMG/M
3300031832\|Ga0318499_10010641	All Organisms → cellular organisms → Bacteria	2978	Open in IMG/M
3300031945\|Ga0310913_10794155	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300032010\|Ga0318569_10389131	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300032035\|Ga0310911_10681091	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300032060\|Ga0318505_10193231	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	951	Open in IMG/M
3300032076\|Ga0306924_11644787	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300032174\|Ga0307470_11354255	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300032180\|Ga0307471_100618446	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1243	Open in IMG/M
3300032180\|Ga0307471_101157574	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	938	Open in IMG/M
3300032205\|Ga0307472_100420275	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1125	Open in IMG/M
3300032205\|Ga0307472_100469376	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300033433\|Ga0326726_11151191	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300034819\|Ga0373958_0140073	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	598	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.65%
Host-Associated	Host-Associated	24.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.65%
Plants	Host-Associated → Plants	24.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.48%
Peat	Environmental → Terrestrial → Peat	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.39%
Loam	Environmental → Terrestrial → Soil → Loam	15.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.74%
Sand	Environmental → Terrestrial → Soil → Sand	0.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.39%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.22%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.48%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.74%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.30%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.35%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.74%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.74%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.87%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.87%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010102	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1014560783	3300000559	Soil	QSQSSRKVSGYVYNRNGEFATSLRVLAQAVDSGGAVVGQRIAHVPGGVGGFGRAHFEVPSLPATASYRLSVWDYTWFQADGKM*
F14TC_1025148203	3300000559	Soil	VSGYVYNQNGEFATSLRVLAQALDPTGAVVGQRIAYVPGGVGGFGRAYFVVPNLPVAENYRVSIWDYTWFQSPGDRR*
JGI11643J11755_114652452	3300000787	Soil	LAQALDPTGAVVGQRIAYVPGGVGGFGRAYFVVPNLPVAENYRVSIWDYTWFQAPGDRR*
JGI10216J12902_1025373071	3300000956	Soil	YNQNGEFATSLRVLAQALDPTGAVVGQRIAYVPGGVGGFGRAYFVVPNLPVAENYRVSIWDYTWFQAPGDRR*
JGI25382J37095_100435823	3300002562	Grasslands Soil	RHGEFAISLRVLAQAVDAGGAVVGQRIAFVPGGVGGFGRAYFEVPNLPATPAYRVSVWDYTWFQSNGDGKM*
Ga0066398_100267741	3300004268	Tropical Forest Soil	QAVDGGGAVVGQRIAFVPGGVGGFGRAYFEVPNLPATAVYRLSVWDYTWFQSNGDGKR*
Ga0066395_105241522	3300004633	Tropical Forest Soil	LRVLAQAVDAGGAVVGQRIAYVPGGVGGFGRAYFEVPNLPSTPSYRLSVWDYTWFQADGDGKR*
Ga0066395_110253142	3300004633	Tropical Forest Soil	SGYVYNQNGEFATQLRVLAQAVDSTGAVVGQGIGYIPGGVGGFGRAYFVVSNLPVADNYRVSVWDYTWFQAPKDPR*
Ga0066677_105057431	3300005171	Soil	LRVLAQAFDSTGAVVGQRIGYVPGGVGGFGRAYFVVPNLPVADNYRVSVWDYTWFQAPRDPR*
Ga0066685_103009193	3300005180	Soil	GEFATSLRVLAQAVDAGGAVVGQRIAFVPGGVGGFGRAYFEVPNLPATAAYRVSVWDYTWFQSNGDGKR*
Ga0066676_111380152	3300005186	Soil	DATGTVVGQRIAYVPGGVGGFGRAYFIVPDLPVADNYRVSVWDYTWFQAPKDRR*
Ga0066675_100636771	3300005187	Soil	EFAINLRVLAQAVDAAGAVVGQRIAYVPGGVGGFGRAYFEVPNLPAAASYRVSIWDYTWFQSSGDGKF*
Ga0066388_1040145371	3300005332	Tropical Forest Soil	AVDSTGAVLGQRVAYVSGGVGGFGRAYFEVPNLPATPSYRVSVWDYTWFQSDGDKR*
Ga0068869_1021219801	3300005334	Miscanthus Rhizosphere	EQSQSSRKVSGYVYNRNGEFATSLRVLARAVDSGGAVVGQRIAYVPGGVGGFGRAHFEVSLPAAASYRLSVWDYTWFQADGKM*
Ga0070680_1012896142	3300005336	Corn Rhizosphere	EFATSLRVLAQAVDATGTVVGQRIAYVPGGVGGFGRAYFIVPDLPVADNYRVSVWDYTWFQAPKDRR*
Ga0070671_1007341441	3300005355	Switchgrass Rhizosphere	YNQNGEFATSLRVLAQAVDTNGTVVGQRIAYVPGGVGGFGRAYFSVPDLPVADNYRVSVWDYTWFQAPKDPR*
Ga0070694_1009325052	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	YNQNGEFATSLRVLAQAVDATGTVVGQRIAYVPGGVGGFGRAHFEVSLPAAASYRLSVWDYTWFQADGKM*
Ga0070708_1004463783	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	DLRVLAQALDPAGAVIGQRIAFVPGGVGGSGRAYFEVPNLPVASSYRVSVWDYTWIQGTGSKR*
Ga0070698_1007734921	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	QHGEFATHLRVLAQAVDPAGAVVGQRIAYVPGGAGGFGRAYFEVPNLPATAAYRVSVWDYTWFQSPGSPLP*
Ga0066661_108466502	3300005554	Soil	HLRVLAQAFDSTGAVVGQRIGYVPGGVGGFGRAYFVVPNLPVADNYRVSVWDYTWFQAPRDPR*
Ga0066691_100159291	3300005586	Soil	QALDASGAVVGQRIQAIPGGVGGFGRAYFTLANLPAANSYRVSVWDYTWFQAPGDRM*
Ga0066905_1008872381	3300005713	Tropical Forest Soil	RVMAQAIDASGAVVGQRIAFVPSGVGGNGRVYFEVPNLPVASTYRVSVYDFTWAQGTGDSRP*
Ga0066905_1009773471	3300005713	Tropical Forest Soil	RVMAQAIDASGAVVGQRIAFVPSGVGGNGRVYFEVPNLPVASTYRLSVYDFTWSQGTGDSRP*
Ga0066903_1007205711	3300005764	Tropical Forest Soil	FTGYVYNHKGEYAEDVRLLAKALDPAGAVIGQHIALVGGVGRSGAYFEVPDLPAASSYRVSVWDYTWVNSKAKK*
Ga0066903_1042880752	3300005764	Tropical Forest Soil	LAQAVDATGTVVGQRIAYVPGGVGGFGRAYFVVSNLPVADNYRVSVWDYTWFQAPKQIH*
Ga0075432_100311903	3300006058	Populus Rhizosphere	RRVSGYVYNQHGETATNMRVLAQALDPTGAVVGQRISYVLGGVGGFGRAYFDVPNLPATPAYRVSVWDYTWFQAPGQRFP*
Ga0070715_101668781	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	GYVYNQNGEFATSLRVLAQAVDATGTVVGQRIAYVPGGVGGFGRAYFSVPDLPVADNYRVSVWDYTWFQAPKDPR*
Ga0075427_100766272	3300006194	Populus Rhizosphere	RRVTGYVYNQHGETATNMRVLAQALDPTGAVVGQRISYVLGGVGGFGRAYFDVPNLPATPAYRVSVWDYTWFQAPGQRFP*
Ga0075428_1007240891	3300006844	Populus Rhizosphere	DGAGTVVGQRIGYVTGGVGGFGRAYFEVPNLPATAAYRVSVWDYTWFQSSGDGKL*
Ga0075421_1018421471	3300006845	Populus Rhizosphere	AVDGAGTVVGQRIGYVLGGVGGFGRAYFEVPNLPATVAYRVSVWDYTWFQSNGDGKI*
Ga0075431_1009013671	3300006847	Populus Rhizosphere	GTVVGQRIGYVLGGVGGFGRAYFEVPNLPATAAYRVSVWDYTWFQSNGDGKI*
Ga0075433_1001280614	3300006852	Populus Rhizosphere	QAVDTSGTVVGQRIAYVPGGVGGFGRAYFIVPDLPVADNYRVSVWDYTWFQAPKDRR*
Ga0075433_105032093	3300006852	Populus Rhizosphere	LAQAVDGAGTVVGQRIGYVTGGVGGFGRAYFEVPNLPATAAYRVSVWDYTWFQSSGDGKM
Ga0075433_117254851	3300006852	Populus Rhizosphere	LAQAVDSAGVVVGQRIAYLPGGVGGFGRAYFEVPNLPATAGYRVSVWDYTWLQSIGGDGKF*
Ga0075425_1011969361	3300006854	Populus Rhizosphere	GYVYNQNGEFATSLRVLAQAVDTSGTVVGQRIAYVPGGVGGFGRAYFSVPDLPVADNYRVSVWDYTWFQAPKDPR*
Ga0075426_109729491	3300006903	Populus Rhizosphere	DPAGAVVGQRIAYIPGGVGGFGRAYFIVQNLPVAEAYRVSVWDYTFFQAPGKTFP*
Ga0074063_119096841	3300006953	Soil	AVDSGGAVVGQRIAYVPGGVGGFGRAHFEVPSLPAAASYRLSVWDYTWFQADGKM*
Ga0075435_1000740654	3300007076	Populus Rhizosphere	RKVRGYVYNQNGESATSLRVLAQALDPMGAVVGQRIAYVPGGVGGFGRSYFEVPSLPVAESYRVSVWDYTWFQAPSFPR*
Ga0099829_112843382	3300009038	Vadose Zone Soil	TGYVYNWHGEYAQDLRVLAQALDPAGAVIGQRIAIVSGGVGGGGAYFEVPNLPAASSYRVSVWNYTLANSKSKR*
Ga0111539_116236211	3300009094	Populus Rhizosphere	QAMDQSGTMTGQRIAFVPGGIGGAASAYFEVPNLPIASTYRVSVWAYTWIQGPKN*
Ga0075418_104139793	3300009100	Populus Rhizosphere	VDGAGTVVGQRIGYVTGGVGGFGRAYFEVPNLPATAAYRVSVWDYTWFQSSGDGKL*
Ga0075418_110864571	3300009100	Populus Rhizosphere	TRRVTGYVYNQHGETATQMRVLAQALDPTGAVVGQRISYVLGGVGGFGRAYFDVPNLPATPAYRVSVWDYTWFQAPGQRFP*
Ga0075418_129026642	3300009100	Populus Rhizosphere	VDGAGTVVGQRIGYVTGGVGGFGRAYFEVPNLPATAAYRVSVWDYTWFQSSGDGKM*
Ga0066709_1008356491	3300009137	Grasslands Soil	LRLLAQAIDSGGAVVGQRIAYVPGGVGGFGRAPFEVPSLPATGSYRLSVWDYTWFQADGKM*
Ga0114129_103232864	3300009147	Populus Rhizosphere	YVYNQHGETATNMRVLAQALDPTGAVVGQRISYVLGGVGGFGRAYFDVPNLPATPAYRVSVWDYTWFQAPGQRFP*
Ga0114129_109823011	3300009147	Populus Rhizosphere	YVYNQHGETATNMRVLAQALDPTGAVVGQRISYVLGGVGGFGRAYFDVPNLPATPAYRVSVWDYTWFQAPGSKFP*
Ga0075423_100145471	3300009162	Populus Rhizosphere	QVRMLAQAVDQSGTVTGQRIAFVPGGVGGAAGAYFEVPNLPVASTYRVSVWAYTWIQGPKN*
Ga0126374_104379492	3300009792	Tropical Forest Soil	GELAISVRVRAQAGDSTGAVLGQRVAYVSGGVGGFGRAYFEVPNLPATPSYRVSVWDYTWFQSDGDKR*
Ga0105068_10163583	3300009836	Groundwater Sand	ALDPSGAVIGQRIAWVPGGVGGSGRAYFEVPNLPPANSYRVSVWDYTWAQGVGDKH*
Ga0126384_112037701	3300010046	Tropical Forest Soil	LRVLAQAVDSTGAVLGQRIAYVPGGVGGFGRAYFIVPGLPIADSYRVSVWDYTWNQAPGSPIP*
Ga0126382_116298192	3300010047	Tropical Forest Soil	VLAQAIDSAGNVVGQRIGYVPGGVGGFGRAYFVVSNMPVADNYRVSVWDYTWFQAPSDRH
Ga0127453_10151712	3300010102	Grasslands Soil	LRVLAQAVDSTGTVVGQRIGYVPGGVGGFGRAYFVVPNMPVADNYRVSVWDYTWFQAPKDPR*
Ga0127456_11101742	3300010140	Grasslands Soil	SGYVYNKNGEFATSLRVLAQAVDSTGTVVGQRIGYVPGGVGGFGRAYFVVPNMPVADNYRVSVWDYTWFQAPKDPR*
Ga0134088_103370241	3300010304	Grasslands Soil	QNGEFATSLRVLAQAVDPTGAVVGQRIAYVPGGVGGFGRAYFIVPDLPVADNYRVSVWDYTWFQAPGDRR*
Ga0134071_107006272	3300010336	Grasslands Soil	EFATNLRLLAQAIDSGGAVVGQRIAYVPGGVGGFGRAPFEVPSLPATASYRLSVWDYTWFQADGKM*
Ga0126372_104333841	3300010360	Tropical Forest Soil	ARKVSGYVYNQNGEFATSLRVLAQAVDTNGTVVGQRIAYVPGGVGGFGRAYFSVPDLPVADNYRVSVWDYTWFQAPKDIR*
Ga0126372_112437941	3300010360	Tropical Forest Soil	HGEHAIQVRMLAQAVDQSGTVTAQRIAFVPGGVGGAAGAYFEVPNLPMASTYRVSVWAYTWIQGPKN*
Ga0126377_120004242	3300010362	Tropical Forest Soil	VLAQAVDSSGAVIGQRIGYVPGGVGGFGRAYFVVSNLPAADTYRVSVWDYTWFQAPKDRR
Ga0126379_121464191	3300010366	Tropical Forest Soil	YVYNHNGESAVTLRVLAQAVDAGGAVVGQRIAYVPGGVGGFGRVYFEVPNLPATPSYRLSVWDYTWFQADGDGKR*
Ga0126381_1011437213	3300010376	Tropical Forest Soil	GYVQNHNGEFATHLRVLAQAVDSTGAVLGQRIAYVPGGVGGFGRAYFIVPGLPIADSYRVSVWDYTWNQAPGSPIP*
Ga0126383_136861991	3300010398	Tropical Forest Soil	QGPNVRKVNSYVSSQHGEFATHLRVLTQAIDSDSDVIGQRIAYIPGGVGGFGRGYFEVPNLPASPNYRVSVWDYSWFQAPNSKH*
Ga0134122_121380832	3300010400	Terrestrial Soil	YNQNGEFATSLRVLAQAVDTRGTVVGQRIAYVPGGVGGFGRAYFSVPDLPIADNYRVSVWDYTWFQAPKDRR*
Ga0137363_109049051	3300012202	Vadose Zone Soil	GERATSLRVLALAIDPAGAVVGHRIAYVPGGVGGFGRVYFEVPNLPVAQSYRVSIWDYTWFQAPGSTIP*
Ga0137362_114500911	3300012205	Vadose Zone Soil	AQAVDAGGAVVGQRIAFVPGGVGGFGRAYFEVPNLPATASYRVSVWDYTWLQAPKHP*
Ga0137377_107925421	3300012211	Vadose Zone Soil	IDPAGAVVGQRIAYVPGGVGGFGRASFEVPNLPATAAYRVSVWDYTWFQSPGSPLP*
Ga0137361_100084481	3300012362	Vadose Zone Soil	LRVLAQAIDPAGAVVGQRLAYVPGGVGGFGRAYFEVPNLPATAAYRVSVWDYTWLQAPGGRFP*
Ga0137397_101649183	3300012685	Vadose Zone Soil	AGVVVGQRIAYVPGGVGGWGRAYFEVPNLPATASYRVSVWDYTWLQSIGGDGKF*
Ga0137395_107447861	3300012917	Vadose Zone Soil	ERATSLRVLALAIDPAGAVVGHRIAYVPGGVGGFGRVYFEVPNLPVAQSYRVSIWDYTWFQAPGSTIP*
Ga0126375_115693191	3300012948	Tropical Forest Soil	YGDYAITLRLLARAVDANGAVVGQRIASVPGGIGGFGRAYFEVPNLPVAAGYQLSVWEYTWFQSDGKM*
Ga0164309_116218681	3300012984	Soil	THLRVLAQAIDPAGAVVGNQIAYVPGGVGGFGRVYFEVPNLPVAESYRVSIWDYTWFQSPGSPIP*
Ga0164304_112363132	3300012986	Soil	STGNRVLAQAIDSGGAVVGQRIAYVPGGVGGFGRAHFEVPSLPATASYRLSVWDYTWFQADGKM*
Ga0157371_110511671	3300013102	Corn Rhizosphere	DGAGTVVGQRIGYVTGGVGGFGRAYFEVPNLPATAAYRVSVWDYTWFQSSGDGKM*
Ga0163162_121943311	3300013306	Switchgrass Rhizosphere	NTRKVSGYVYNQNGEFATSLRVLAQAVDATGTVVGQRIAYVPGGVGGFGRAYFIVPDLPVADNYRVSVWDYTWFQAPKDRR*
Ga0163162_133608902	3300013306	Switchgrass Rhizosphere	LAQAVDSGGAVVGQRIAHVPGGVGGFGRAHFEVSLPAAASYRLSVWDYTWFQADGKM*
Ga0182036_110939131	3300016270	Soil	DQSATTRKVSGYVYNQNGESATSLRVLAQAVDATGTVVGQRIAFVPGGVGGFGRAYFIVSNLPVADNYRVSVWDYTWFQAPKQNH
Ga0182032_114983741	3300016357	Soil	YNQNGEFATSLRVLAQAVDATGTVVGQRIAYVPGGVGGFGRAYFVVSDLPVSDNYRVSVWDYTWFQAPKQNH
Ga0182034_120029101	3300016371	Soil	AIDSDGEVVGQRIAYVPGGVGGFGRGYFEVPNLPASPNYRVSVWDYSWFQAPNSKH
Ga0163161_117607521	3300017792	Switchgrass Rhizosphere	HLRVLAQAIDPAGAVVGSRIAYVPGGVGGFGRVYFEVPNLPVAENYRVSIWDYTWFQAPGSPIP
Ga0187775_102524111	3300017939	Tropical Peatland	AMKVRVLAQALDQQGAVIGQRIEWVPGGVNGFGRTYFVVAQLPAASTYRVTIWDYTWHQTDGGDHR
Ga0187785_104106881	3300017947	Tropical Peatland	RVLARAVDASGAVVGQRIVSVPGGVGGFGRAYFEVPNLPVTASYQVSIWDFTWFQADGKM
Ga0207660_104679481	3300025917	Corn Rhizosphere	NGEFATSLRVLAQAVDATGTVVGQRIAYVPGGVGGFGRAYFIVPDLPVADNYRVSVWDYTWFQAPKDRR
Ga0207644_106407772	3300025931	Switchgrass Rhizosphere	GYVYNQNGEFATSLRVLAQAVDTNGTVVGQRIAYVPGGVGGFGRAYFSVPDLPVADNYRVSVWDYTWFQAPKDPR
Ga0207669_115727812	3300025937	Miscanthus Rhizosphere	GEFATSLRVLARAVDSGGAVVGQRIAYVPGGVGGFGRAHFEVPSLPATASYRLSVWDYTWFQADGKM
Ga0209236_10390281	3300026298	Grasslands Soil	LAQALDPAGAVIGQRIAFVPGGVGGSGRAYFEVPNLPVASSYRVSVWDYTWVQGTGNKR
Ga0209055_12160382	3300026309	Soil	HLRVLAQAFDSTGAVVGQRIGYVPGGVGGFGRAYFVVPNLPVADNYRVSVWDYTWFQAPRDPR
Ga0257166_10588831	3300026358	Soil	AQALDPSGAVIGQRIAWVPGGVGGSGRAYFEVPNLPPANSYRVSVWDYTWAQGTGDKH
Ga0209058_10422394	3300026536	Soil	INLRVLAQAVDAAGAVVGQRIAYVPGGVGGFGRAYFEVPNLPAAASYRVSIWDYTWFQSSGDGKF
Ga0209058_11704432	3300026536	Soil	RVMAQAVDASGAVVGQRIAFVPGGVGGLGRIYFEVPNLPAASTYRVSVYDFTWSQGTGDSRP
Ga0179587_108658332	3300026557	Vadose Zone Soil	RNGEFATNLRVLAQAIDSGGAVVGQRIAYVPGGVGGFGRAPFEVPSLPATASYRLSVWDYTWFQADGKM
Ga0209799_10714422	3300027654	Tropical Forest Soil	SLYLAGEVLAQAVDSSGAVIGQRIGYIPGGVGGFGRAYFVVSNLPVADTYRVSVWDYTWFQAPKDPR
Ga0207428_107898561	3300027907	Populus Rhizosphere	VLAQALDPAGAVIGQRIVFVPGGVGGSGRAYFEVPNLPVASSYRVSVWDYTWVQGTGNKR
Ga0310915_103977362	3300031573	Soil	EQGPSTRRVSGYVYNQNGEFATQLRVLAQAVDSTGAVVGQGIGYIPGGVGGFGRAYFVVSNLPVADNYRVSVWDYTWFQAPKDPR
Ga0318561_108406721	3300031679	Soil	LRVLAQAVDSTGAVVGQGIGYIPGGVGGFGRAYFVVSNLPVADNYRVSVWDYTWFQAPKDPR
Ga0318496_108067071	3300031713	Soil	VYNKNGEYAINLRVLARAVDASGAVVGQRIVSVPGGVGGFGRAYFEVPNLPVTASYQVSIWDFTWFQADGKM
Ga0306917_102203293	3300031719	Soil	LARAVDASGAVVGQRIVSVPGGVGGFGRAYFEVPNLPVTASYQVSIWDFTWFQADGKM
Ga0307469_105710961	3300031720	Hardwood Forest Soil	ATHLRVLAQAIDPAGAVVGNQIAYVPGGVGGFGRVYFEVPNLPVAQSYRVSIWDYTWFQSPGSPIP
Ga0307469_123461551	3300031720	Hardwood Forest Soil	NTRKVSGYVYNQNGEFATSLRVLAQAVDATGTVVGQRIAYVPGGVGGFGRAYFIVPDLPVADNYRVSVWDYTWFQAPKDRR
Ga0307468_1016683061	3300031740	Hardwood Forest Soil	HGENATHLRVLAQAIDPAGAVVGNQIAYVPGGVGGFGRVYFEVPNLPVAPNYRVSIWDYTWFQSPGSPIP
Ga0318498_101596631	3300031778	Soil	YNQNGEFATQLRVLAQAVDSTGAVVGQGIGYIPGGVGGFGRAYFVVSNLPVADNYRVSVWDYTWFQAPKDPR
Ga0318566_105822032	3300031779	Soil	KNGEYAINLRVLARAVDASGAVVGQRIVSVPGGVGGFGRAYFEVPNLPVTASYQVSIWDFTWFQADGKM
Ga0318548_104631201	3300031793	Soil	YAINLRVLARAVDASGAVVGQRIVSVPGGVGGFGRAYFEVPNLPVTASYQVSIWDFTWFQADGKM
Ga0318564_104353021	3300031831	Soil	LRVLAQAVDAGGAVVGQRIAYVPGGVGGFGRAYFEVPNLPATPSYRLSVWDYTWFQADGDGKR
Ga0318499_100106411	3300031832	Soil	EYAITLRVLAQAVDAGGAVVGQRIAYVPGGVGGFGRAYFEVPNLPATPSYRLSVWDYTWFQADGDGKR
Ga0310913_107941552	3300031945	Soil	AQAVDSTGAVVGQGIGYIPGGVGGFGRAYFVVSNLPVADNYRVSVWDYTWFQAPKDPR
Ga0318569_103891311	3300032010	Soil	SATSLRVLAQAVDATGTVVGQRIAFVPGGVGGFGRAYFIVSNLPVADNYRVSVWDYTWFQAPKQNH
Ga0310911_106810912	3300032035	Soil	ATQLRVLAQAVDSTGAVVGQGIGYIPGGVGGFGRAYFVVSNLPVADNYRVSVWDYTWFQAPKDPR
Ga0318505_101932311	3300032060	Soil	GEYAITLRVLAQAVDAGGAVVGQRIAYVPGGVGGFGRAYFEVPNLPATPSYRLSVWDYTWFQADGDGKR
Ga0306924_116447871	3300032076	Soil	FATSLRVLAQAVDATGTVVGQRIAYVPGGVGGFGRAYFVVSNLPVSDNYRVSVWDYTWFQAPKQIH
Ga0307470_113542552	3300032174	Hardwood Forest Soil	YVYNQNGEFATSLRVLAQAVDSAGTVVGQRIGYVPGGVGGFGRAYFVVSNLPVADSYRVSVWDYTWFQAPKDPR
Ga0307471_1006184463	3300032180	Hardwood Forest Soil	AQDLRVLAQALDPAGAVIGQRIAFVPGGVGGSGRAYFEVPNLPVASSYRVSVWDYTWIQGTGSKR
Ga0307471_1011575741	3300032180	Hardwood Forest Soil	SGGAVVGQRIAYVPGGVGGFGRAYFEVPNLPATASYRLSVWDYTWFQADGNGKM
Ga0307472_1004202753	3300032205	Hardwood Forest Soil	NLRVLAQAIDAGGTVVGQRIAYVPGGVGGFGRAHFEVPSLPATASYRLSVWDYTWFQADGKM
Ga0307472_1004693761	3300032205	Hardwood Forest Soil	ATSLRVLAQAVDSAGTVVGQRIGYVPGGVGGFGRAYFVVSNLPVADSYRVSVWDYTWFQAPKDPR
Ga0326726_111511911	3300033433	Peat Soil	NQNGEFATSLRVLAQAVDATGTVVGQRIAYVPGGVGGFGRAYFIVPDLPVADNYRVSVWDYTWFQAPKDPR
Ga0373958_0140073_1_180	3300034819	Rhizosphere Soil	VLAQAIDAGGAVVGQRIAHVPGGVGGFGRAQFEVPSLPATASYRLSVWDYTWFQADGKM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080574

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences