Metagenome / Metatranscriptome Family F079826

Basic Information
Family ID	F079826
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	39 residues
Representative Sequence	VAAIIEGKIMNLSVEAKVAIAVATSFVVLIVGAMAQG
Number of Associated Samples	98
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	36.52 %
% of genes near scaffold ends (potentially truncated)	46.09 %
% of genes from short scaffolds (< 2000 bps)	86.96 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Most Common Taxonomy
Group	Bacteria (71.304 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (23.478 % of family members)
Environment Ontology (ENVO)	Unclassified (38.261 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.652 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.69% β-sheet: 0.00% Coil/Unstructured: 52.31%
Feature Viewer

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Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF01471	PG_binding_1	6.09
PF01192	RNA_pol_Rpb6	3.48
PF13602	ADH_zinc_N_2	2.61
PF09720	Unstab_antitox	2.61
PF10543	ORF6N	1.74
PF15919	HicB_lk_antitox	1.74
PF08240	ADH_N	1.74
PF08734	GYD	1.74
PF06250	YhcG_C	1.74
PF04255	DUF433	0.87
PF06736	TMEM175	0.87
PF04055	Radical_SAM	0.87
PF00107	ADH_zinc_N	0.87
PF00902	TatC	0.87
PF15937	PrlF_antitoxin	0.87
PF09907	HigB_toxin	0.87
PF00561	Abhydrolase_1	0.87
PF02661	Fic	0.87
PF00128	Alpha-amylase	0.87
PF10049	DUF2283	0.87
PF13560	HTH_31	0.87
PF02452	PemK_toxin	0.87
PF07676	PD40	0.87
PF07690	MFS_1	0.87
PF07927	HicA_toxin	0.87
PF08378	NERD	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1758	DNA-directed RNA polymerase, subunit K/omega	Transcription [K]	3.48
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	1.74
COG4804	Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family	General function prediction only [R]	1.74
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.87
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.87
COG0805	Twin-arginine protein secretion pathway component TatC	Intracellular trafficking, secretion, and vesicular transport [U]	0.87
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.87
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.87
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.87
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.87
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.87
COG3548	Uncharacterized membrane protein	Function unknown [S]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.30 %
Unclassified	root	N/A	28.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.30 %
Unclassified	root	N/A	28.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.30 %
Unclassified	root	N/A	28.70 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	48.70 %
Unclassified	root	N/A	28.70 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.74 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	48.70 %
Unclassified	root	N/A	28.70 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.74 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	33.91 %
Unclassified	root	N/A	28.70 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.87 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.87 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.87 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.87 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.87 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	33.04 %
Unclassified	root	N/A	28.70 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.74 %
Verrucomicrobia bacterium 13_1_40CM_4_54_4	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_40CM_4_54_4	0.87 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.87 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.87 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.87 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.87 %
Puniceicoccales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	33.04 %
Unclassified	root	N/A	28.70 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1.74 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.87 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.87 %
Puniceicoccaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae	0.87 %
Verrucomicrobia bacterium 13_1_40CM_4_54_4	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_40CM_4_54_4	0.87 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.87 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	33.04 %
Unclassified	root	N/A	28.70 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1.74 %
unclassified Puniceicoccaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae	0.87 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.87 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.87 %
Verrucomicrobia bacterium 13_1_40CM_4_54_4	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_40CM_4_54_4	0.87 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.87 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	33.04 %
Unclassified	root	N/A	28.70 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1.74 %
Puniceicoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium	0.87 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	0.87 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.87 %
Verrucomicrobia bacterium 13_1_40CM_4_54_4	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_40CM_4_54_4	0.87 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.87 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16709101	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	7523	Open in IMG/M
2170459005\|F1BAP7Q02FS9VD	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
2170459005\|F1BAP7Q02JGE7K	Not Available	504	Open in IMG/M
2189573005\|GZGK9D402JNHHP	Not Available	510	Open in IMG/M
3300000559\|F14TC_101694780	All Organisms → cellular organisms → Bacteria	1332	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10000424	All Organisms → cellular organisms → Bacteria	9438	Open in IMG/M
3300000955\|JGI1027J12803_101802510	Not Available	909	Open in IMG/M
3300005179\|Ga0066684_10161585	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1428	Open in IMG/M
3300005180\|Ga0066685_11090831	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M
3300005186\|Ga0066676_10918478	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300005186\|Ga0066676_11176342	Not Available	502	Open in IMG/M
3300005340\|Ga0070689_100391797	Not Available	1172	Open in IMG/M
3300005440\|Ga0070705_100589135	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300005450\|Ga0066682_10482924	Not Available	785	Open in IMG/M
3300005529\|Ga0070741_10040503	All Organisms → cellular organisms → Bacteria	6028	Open in IMG/M
3300005540\|Ga0066697_10171782	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1285	Open in IMG/M
3300005540\|Ga0066697_10291818	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300005540\|Ga0066697_10807552	Not Available	509	Open in IMG/M
3300005552\|Ga0066701_10125676	All Organisms → cellular organisms → Bacteria → Proteobacteria	1523	Open in IMG/M
3300005553\|Ga0066695_10041808	All Organisms → cellular organisms → Bacteria	2696	Open in IMG/M
3300005556\|Ga0066707_10554726	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300005558\|Ga0066698_10892582	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	569	Open in IMG/M
3300005558\|Ga0066698_11104246	Not Available	501	Open in IMG/M
3300005574\|Ga0066694_10232631	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300005617\|Ga0068859_101427200	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	764	Open in IMG/M
3300005764\|Ga0066903_100017971	All Organisms → cellular organisms → Bacteria	7346	Open in IMG/M
3300005764\|Ga0066903_100525039	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2018	Open in IMG/M
3300005764\|Ga0066903_102545076	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	991	Open in IMG/M
3300006032\|Ga0066696_10732440	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	634	Open in IMG/M
3300006800\|Ga0066660_10876562	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	731	Open in IMG/M
3300009012\|Ga0066710_100909679	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1355	Open in IMG/M
3300009012\|Ga0066710_104019959	Not Available	550	Open in IMG/M
3300009093\|Ga0105240_12169210	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	576	Open in IMG/M
3300009137\|Ga0066709_102459011	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	705	Open in IMG/M
3300009137\|Ga0066709_102468355	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	703	Open in IMG/M
3300009174\|Ga0105241_10394284	All Organisms → cellular organisms → Bacteria	1213	Open in IMG/M
3300009545\|Ga0105237_12234858	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300009792\|Ga0126374_10649192	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium	786	Open in IMG/M
3300010043\|Ga0126380_11303203	Not Available	632	Open in IMG/M
3300010048\|Ga0126373_11031279	Not Available	888	Open in IMG/M
3300010301\|Ga0134070_10434483	Not Available	523	Open in IMG/M
3300010304\|Ga0134088_10384096	Not Available	684	Open in IMG/M
3300010320\|Ga0134109_10488418	Not Available	506	Open in IMG/M
3300010335\|Ga0134063_10699804	Not Available	524	Open in IMG/M
3300010364\|Ga0134066_10031152	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1261	Open in IMG/M
3300010366\|Ga0126379_12220017	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	650	Open in IMG/M
3300010373\|Ga0134128_12540853	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	564	Open in IMG/M
3300010376\|Ga0126381_102268886	Not Available	780	Open in IMG/M
3300010397\|Ga0134124_10117626	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2335	Open in IMG/M
3300012201\|Ga0137365_10049001	All Organisms → cellular organisms → Bacteria	3204	Open in IMG/M
3300012202\|Ga0137363_11043480	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	694	Open in IMG/M
3300012204\|Ga0137374_10383896	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1122	Open in IMG/M
3300012208\|Ga0137376_10186981	All Organisms → cellular organisms → Bacteria	1790	Open in IMG/M
3300012209\|Ga0137379_11824389	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	502	Open in IMG/M
3300012211\|Ga0137377_10117168	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2536	Open in IMG/M
3300012212\|Ga0150985_105343835	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	591	Open in IMG/M
3300012212\|Ga0150985_114159715	Not Available	584	Open in IMG/M
3300012350\|Ga0137372_10058154	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3380	Open in IMG/M
3300012353\|Ga0137367_10114592	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1981	Open in IMG/M
3300012354\|Ga0137366_10015592	All Organisms → cellular organisms → Bacteria	5961	Open in IMG/M
3300012354\|Ga0137366_10265119	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1271	Open in IMG/M
3300012356\|Ga0137371_10667695	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	796	Open in IMG/M
3300012925\|Ga0137419_11170207	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	643	Open in IMG/M
3300012929\|Ga0137404_10352425	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1288	Open in IMG/M
3300012929\|Ga0137404_11903824	Not Available	554	Open in IMG/M
3300012957\|Ga0164303_10697140	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	684	Open in IMG/M
3300012957\|Ga0164303_11072900	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	579	Open in IMG/M
3300012960\|Ga0164301_11624157	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	537	Open in IMG/M
3300012977\|Ga0134087_10777810	Not Available	516	Open in IMG/M
3300014969\|Ga0157376_12372980	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300015371\|Ga0132258_10755464	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2450	Open in IMG/M
3300017654\|Ga0134069_1115670	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	881	Open in IMG/M
3300017657\|Ga0134074_1073121	Not Available	1166	Open in IMG/M
3300017997\|Ga0184610_1233542	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	613	Open in IMG/M
3300018028\|Ga0184608_10376353	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	620	Open in IMG/M
3300018071\|Ga0184618_10200480	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	834	Open in IMG/M
3300018073\|Ga0184624_10226531	Not Available	836	Open in IMG/M
3300018431\|Ga0066655_10774429	Not Available	652	Open in IMG/M
3300018482\|Ga0066669_11005384	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300018482\|Ga0066669_11192405	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	687	Open in IMG/M
3300019767\|Ga0190267_11229146	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	552	Open in IMG/M
3300019877\|Ga0193722_1000429	All Organisms → cellular organisms → Bacteria	9264	Open in IMG/M
3300019887\|Ga0193729_1043851	All Organisms → cellular organisms → Bacteria	1839	Open in IMG/M
3300019996\|Ga0193693_1065875	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_40CM_4_54_4	540	Open in IMG/M
3300020004\|Ga0193755_1038766	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1568	Open in IMG/M
3300020015\|Ga0193734_1072025	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	606	Open in IMG/M
3300020062\|Ga0193724_1057851	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	816	Open in IMG/M
3300021344\|Ga0193719_10014414	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3345	Open in IMG/M
3300021344\|Ga0193719_10046459	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1881	Open in IMG/M
3300021344\|Ga0193719_10053101	All Organisms → cellular organisms → Bacteria	1756	Open in IMG/M
3300021510\|Ga0222621_1145744	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300022467\|Ga0224712_10385030	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	667	Open in IMG/M
3300025901\|Ga0207688_10876828	Not Available	568	Open in IMG/M
3300025986\|Ga0207658_10196786	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300026067\|Ga0207678_10863432	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	800	Open in IMG/M
3300026306\|Ga0209468_1083543	Not Available	1061	Open in IMG/M
3300026308\|Ga0209265_1091881	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300026310\|Ga0209239_1127282	Not Available	1048	Open in IMG/M
3300026323\|Ga0209472_1095460	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1192	Open in IMG/M
3300026326\|Ga0209801_1288166	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	591	Open in IMG/M
3300026327\|Ga0209266_1183933	Not Available	785	Open in IMG/M
3300026334\|Ga0209377_1127241	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1012	Open in IMG/M
3300026528\|Ga0209378_1114635	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1168	Open in IMG/M
3300026538\|Ga0209056_10575889	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300026550\|Ga0209474_10166083	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1428	Open in IMG/M
3300027671\|Ga0209588_1207974	Not Available	608	Open in IMG/M
3300028381\|Ga0268264_11437109	Not Available	700	Open in IMG/M
3300028824\|Ga0307310_10359892	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	717	Open in IMG/M
3300028884\|Ga0307308_10334197	Not Available	726	Open in IMG/M
3300031057\|Ga0170834_108805705	Not Available	640	Open in IMG/M
3300031231\|Ga0170824_113335892	Not Available	1174	Open in IMG/M
3300031231\|Ga0170824_122286920	Not Available	644	Open in IMG/M
3300031720\|Ga0307469_10089359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	2120	Open in IMG/M
3300031820\|Ga0307473_10217570	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1147	Open in IMG/M
3300031938\|Ga0308175_102825236	Not Available	542	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.57%
Host-Associated	Host-Associated	10.43%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.22%
Plants	Host-Associated → Plants	10.43%
Aquatic	Environmental → Aquatic	4.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.22%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.22%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.22%
Sediment	Environmental → Aquatic → Sediment	4.35%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.00%
Loam	Environmental → Terrestrial → Soil → Loam	5.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.61%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	32.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	23.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.04%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.04%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.35%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.74%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.87%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.87%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2189573005	Grass soil microbial communities from Rothamsted Park, UK - FG3 (Nitrogen)	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079826

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03040290	2088090014	Soil	VSVAVMEGKIMELSIEMKVAIAVATGFVVLVVGAMAQG
E41_06904700	2170459005	Grass Soil	KNGGQSGCGRQIEGRIMNLSVEAKVAIAVATSLVVLIVGAMAQG
E41_01410290	2170459005	Grass Soil	AIIEGEIMKLSIELKVAIAVAAGFVALTIGAMAQGG
FG3_08954450	2189573005	Grass Soil	VAAIIEGRIMNLSVETKVAIAVATSFVVLMVGAMAQG
F14TC_1016947804	3300000559	Soil	VAAIIEGKIMNLSVEAKVAIAVTTGFVVLIVGAMAQG*
AF_2010_repII_A1DRAFT_100004242	3300000597	Forest Soil	MTAIIKWKIMNLSVETKVAIAVATSFVVLMVGAMASQG*
JGI1027J12803_1018025103	3300000955	Soil	LAAIIEGKIMNLSVEAKVAIAVATSFLVLIVGAMAQG*
Ga0066684_101615851	3300005179	Soil	MQSQVAARIEGKIVSLSIDIKMAIAVATGFVMLMGAMAQG*
Ga0066685_110908311	3300005180	Soil	GIGVAAIIEGKIMNLSVEAKVAIAVATSFVVLIVGAMAQA*
Ga0066676_109184781	3300005186	Soil	KKRGQRVAAIIEGKIMNLSIEAKVAIAVATGLVVLIVGAMAQG*
Ga0066676_111763421	3300005186	Soil	GKIQKQGGIGVAAIIEGKIMNLSVEAKVAIAVATSFVVLIVGAMAQG*
Ga0070689_1003917972	3300005340	Switchgrass Rhizosphere	KSGGDVSVAVMEGKIMELSIETKVAIAVATGFVVLVVGAMAQG*
Ga0070705_1005891351	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	QKRGVIGMAAIIAGKIMILSVEAKVAIAVATGFVVLIVGAMAQG*
Ga0066682_104829242	3300005450	Soil	SKKGKIQKRGGIGVAAIIEGKIMNLSVEAKVAIAVATGFVVLILGAMAQG*
Ga0070741_100405036	3300005529	Surface Soil	MKEGKIVSLSIETKVAIAVATGFVLMVVGAMAQG*
Ga0066697_101717824	3300005540	Soil	MAAIIAGKIMSLSVEAKVAIAVATSFVLLIVGAMAQG*
Ga0066697_102918182	3300005540	Soil	VAAIIEGKIMNLSVEAKVAIAVATGFVVLILGAMAQG*
Ga0066697_108075521	3300005540	Soil	GGIGVAAIIEGKIMNLSVEAKVAIAVATSFVVLIVGAMAQG*
Ga0066701_101256763	3300005552	Soil	RVAAIIEGKIMNLSIEAKVAIAVATGLVVLIVGAMAQG*
Ga0066695_100418084	3300005553	Soil	VAAIIEGKIMNLSVEAKVAIAVATGFVVLIVGAMAQG*
Ga0066707_105547261	3300005556	Soil	MIEGKIMNLSVEAKVAIAVATSFVVLIVGAMAQG*
Ga0066698_108925821	3300005558	Soil	GGIGVAAIIEGKIMNLSVEAKVAIAVATSFVVLIVGAMAQA*
Ga0066698_111042461	3300005558	Soil	KKGKIQKQGGIGVAAIIEGKIMNLSVEAKVAIAVATGFVVLILGAMAQG*
Ga0066694_102326311	3300005574	Soil	VAAIIEGKIMNLSVEAKVAIAVATSFVVLIVGAMAQG*
Ga0068859_1014272002	3300005617	Switchgrass Rhizosphere	LPPNKREQEGKIVSLTIEIKVAIAVATGFALMVVGAMAQG*
Ga0066903_1000179713	3300005764	Tropical Forest Soil	MTAKIKGKIMNLSVETKVAIAVATSFVVLMVGAMASQG*
Ga0066903_1005250391	3300005764	Tropical Forest Soil	MITIIKGKIMNLSVETKVAIAVATSFVVLIVGAMAQG*
Ga0066903_1025450761	3300005764	Tropical Forest Soil	MTATIKGKIMNLSVETKVAMAVATSFVLLVVGAMAQG*
Ga0066696_107324402	3300006032	Soil	AIIEGKIMNLSVEAKVAIAVATGFVLLIVGAMAQG*
Ga0066660_108765623	3300006800	Soil	MQSQVAARIEGKIVSLSIEIKMAIAVATGFVMLIMGAMAQG*
Ga0066710_1009096792	3300009012	Grasslands Soil	VAAIIEGKIMNLSVEAKVAIAVATSFVVVIVGAMAQG
Ga0066710_1040199591	3300009012	Grasslands Soil	GGIGVAAIIEGKIMNLSVEAKVAIAVATGFVVLILGAMAQG
Ga0105240_121692102	3300009093	Corn Rhizosphere	VSVAVMEGKIMELSIETKVAIAVATGFVVLVVGAMAQG*
Ga0066709_1024590111	3300009137	Grasslands Soil	RGDVVATIIEGKIMDLSIETKVAIAVAMGFIVVIVGAIAQG*
Ga0066709_1024683551	3300009137	Grasslands Soil	KTGVIGMAAIIAGKIMSLSVEAKVAIAVATGFVVLIVGAMAQG*
Ga0105241_103942843	3300009174	Corn Rhizosphere	MTAMIEERIMNLSVETKVAIAVATSFVVLMVGAMAAQG*
Ga0105237_122348581	3300009545	Corn Rhizosphere	HTVTPGTKGGLMNLSVETKVAIAVATSFVVLMVGAMAQG*
Ga0126374_106491921	3300009792	Tropical Forest Soil	VAAIIEGKIMNLSVEMKVAIAVATSFVVLLVGAMAQG*
Ga0126380_113032031	3300010043	Tropical Forest Soil	MTDIIKGKIMNLSVETKVAIAVATSFVVLIVGAMAQG*
Ga0126373_110312791	3300010048	Tropical Forest Soil	MTDITKGKIMNLSVETKVAIAVATSFVVLMVGAMAQG*
Ga0134070_104344832	3300010301	Grasslands Soil	MAAIIAGKMMNLSVEAKVAIAVATGFVMLIVGAMAQG*
Ga0134088_103840962	3300010304	Grasslands Soil	VSVAVMEGKIMELSIETKVAIAVATGFVVLIVGAMAQG*
Ga0134109_104884181	3300010320	Grasslands Soil	MAAIIAGKIMSLSVEAKVAIAVATGFIVLIVGAMAQG*
Ga0134063_106998041	3300010335	Grasslands Soil	MNAKVEGRIMNLSVEAKIAIAVATVFVVLIVGAMARG*
Ga0134066_100311521	3300010364	Grasslands Soil	MTAKVEGRIMNLSVEAKIAIAVATVFVVLIVGAMARW*
Ga0126379_122200172	3300010366	Tropical Forest Soil	GGHRMTAIIKWKIMNLSVETKVAIAVATSFVVLMVGAMAQG*
Ga0134128_125408531	3300010373	Terrestrial Soil	LTKQSQVAGIIEGKIVSLSIEIKVAIAVATGFVLMVVGAMAQR*
Ga0126381_1022688862	3300010376	Tropical Forest Soil	MTAIIKGKIMNLSVEAKVAIAVATSFVVFMVGAMAQG*
Ga0134124_101176262	3300010397	Terrestrial Soil	LPPNKREQEGKIVSLTIEIKVAIAVATGFALMLVGAMAQG*
Ga0137365_100490013	3300012201	Vadose Zone Soil	VVATIIEGKIMDLSIETKVAIAVATGFVVLIVGAMAQG*
Ga0137363_110434802	3300012202	Vadose Zone Soil	MQSQVAGKIEGEIVSLSIEIKVAIAVATGFVMLIMGAMAQE*
Ga0137374_103838961	3300012204	Vadose Zone Soil	VAAIIEGKIMNLSVEAKVAIAVATIFVVLIVGAMAQG*
Ga0137376_101869817	3300012208	Vadose Zone Soil	MIEGKIMNLSVEAKVAIAVATSFILLIVGAMAQG*
Ga0137379_118243891	3300012209	Vadose Zone Soil	KRGGIGVAAIIEGKIMNLSVEAKVAIAVATSFVVLIVGAMAQG*
Ga0137377_101171682	3300012211	Vadose Zone Soil	MIEGKIMNLSVEMKVAIVVATSFILLVVGAMAQG*
Ga0150985_1053438351	3300012212	Avena Fatua Rhizosphere	SGVAAIIEGKIMNLSVEAKVAIAVETSFVLLIVGAMAQG*
Ga0150985_1141597152	3300012212	Avena Fatua Rhizosphere	KDSKRGGRLATIIEEDIMSLSVEAKVAIAVATSFLMLIVGAMAQG*
Ga0137372_100581541	3300012350	Vadose Zone Soil	KIKNGGDVVATIIEGKIMDLSIETKVAIAVAMGFIVVIVGAMAQG*
Ga0137367_101145924	3300012353	Vadose Zone Soil	MGAIIAGKIMNLSVEAKVAIAVATGFIVLIVGAMAQG*
Ga0137366_100155929	3300012354	Vadose Zone Soil	MIEGKIMNSSVEMKVAIVVATSFILLVVGAMAQG*
Ga0137366_102651192	3300012354	Vadose Zone Soil	VAAIIEGKIMNLSVEAKVAIAVATIFVVLIVGAMGQG*
Ga0137371_106676951	3300012356	Vadose Zone Soil	IQKRGGIGVAAIIEGKIMNLSVEAKVAIAVATSFVVLIVGAMAQG*
Ga0137419_111702071	3300012925	Vadose Zone Soil	AIIEGKNMNLSVETKVAIAVATGFVVLIVGAMAQG*
Ga0137404_103524252	3300012929	Vadose Zone Soil	MAAIIAGKIMSLSVEAKVAIAVATSFILLIVGAMAQG*
Ga0137404_119038241	3300012929	Vadose Zone Soil	MGAIIAGKIMNLSVEAKVAIAVTTGFVLLIVGAMAQG*
Ga0164303_106971401	3300012957	Soil	AKARLPGLIEGKIVSLSIEIKVAIAVATSFLLMLVGAMAQG*
Ga0164303_110729003	3300012957	Soil	TGITEGRIVSLSIEIKVAIAVATGFLLMFVGAMAQG*
Ga0164301_116241571	3300012960	Soil	HNLKGEIMNLSVETKVAIAVATSLVALIVGAMAQA*
Ga0134087_107778102	3300012977	Grasslands Soil	VAAIIEGKIMNLSVEAKVAIAVATSFVVLIVGAMAQA*
Ga0157376_123729802	3300014969	Miscanthus Rhizosphere	VAEFVAIIEGKMMNLSVETKVAIVVATSFILLVVGAMAQG*
Ga0132258_107554641	3300015371	Arabidopsis Rhizosphere	MEGRIMNLSVEAKVAIAVATSFVVLMMGAMAGQG*
Ga0134069_11156702	3300017654	Grasslands Soil	SKTEDKTRAQGVSAIIEGKIMNLSVETKVAIAVATSLVALIVGAMAQG
Ga0134074_10731211	3300017657	Grasslands Soil	VAAIIEGKIMNLSVETKVAIAVATSFVVLIVGAMAQG
Ga0184610_12335421	3300017997	Groundwater Sediment	IKEGQRVAAMIEGKIMNLSVETKVAIVVATSFILLIVGVMAQG
Ga0184608_103763531	3300018028	Groundwater Sediment	SKRGQRVAAIIEGKIMNLSVETKVAIAVATSFILLVVGAMAQG
Ga0184618_102004801	3300018071	Groundwater Sediment	ELAAIIEGKIVGLSIEIKVAIAVASGFVLMLVGAMAQG
Ga0184624_102265311	3300018073	Groundwater Sediment	VAAIIEGKIMNLSVETKVAIAVATSFVVVIVGAMAQG
Ga0066655_107744292	3300018431	Grasslands Soil	VAAIIEGKIMNLSVEAKVAIAVATGFVVLILGAMAQG
Ga0066669_110053842	3300018482	Grasslands Soil	VAAIIEGKIMNLSVEAKVAIAVATGFVVLIVGAMAQG
Ga0066669_111924051	3300018482	Grasslands Soil	VAAIIEGKIMNLSVEAKVAIAVATSFVVLIVGAMAQ
Ga0190267_112291462	3300019767	Soil	VAGIIEGKIVSVSIEIKVAIAVATGFALMVVGAMAQG
Ga0193722_10004296	3300019877	Soil	MATIVEGENFMNLSVETKVAIAVATSFVVLMVGAMAQV
Ga0193729_10438515	3300019887	Soil	MAAIIAGKIMSLSVEAKVAIAVATSFVLLIVGAMAQG
Ga0193693_10658752	3300019996	Soil	GVIGIAAVIEGKIMNLSVETKVAIVVATSFVLLIVGAMAQG
Ga0193755_10387661	3300020004	Soil	SKTGVIGIAAVIEGKIMNLSVETKVAIVVATSFVLLIVGAMAQG
Ga0193734_10720251	3300020015	Soil	RSDLQKRENSKTGVIGVAAMIEGKIMNLSVEAKVAIAVATSFILLIVGAMAQG
Ga0193724_10578513	3300020062	Soil	KKRGDGVATIIKGEIVSLSIETKVAIAVATGFVLMVIGAMAQG
Ga0193719_100144141	3300021344	Soil	VVATIIEEKLVSLSIETKVAIAVATGFVLMVVGAMAQG
Ga0193719_100464591	3300021344	Soil	AVIEGKIMNLSVETKVAIVVATSFVLLIVGAMAQG
Ga0193719_100531015	3300021344	Soil	MAAIIAGKIMSLSVEAKVAIAVATGFVVLIVGAMAQG
Ga0222621_11457442	3300021510	Groundwater Sediment	NRRVEGKIVSLSIEIKVAIAVATGFALMVVGAMAQR
Ga0224712_103850302	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	TPGTKGGLMNLSVETKVAIAVATSFVVLMVGAMAQG
Ga0207688_108768282	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	VSVAVMEGKIMELSIETKVAIAVATGFVVLVVGAMAQG
Ga0207658_101967861	3300025986	Switchgrass Rhizosphere	QKKKKVKSGGDVSVAVMEGKIMELSIETKVAIAVATGFVVLVVGAMAQG
Ga0207678_108634321	3300026067	Corn Rhizosphere	VTIVEGKMMNLSVETKVAIVVATSFILLVVGAMAQG
Ga0209468_10835432	3300026306	Soil	KGKIQKQGGIGVAAIIEGKIMNLSVEAKVAIAVATGFVVLILGAMAQG
Ga0209265_10918811	3300026308	Soil	IGVAAIIEGKIMNLSVEAKVAIAVATSFVVLIVGAMAQG
Ga0209239_11272822	3300026310	Grasslands Soil	VAAIIEGKIMNLSVEAKVAIAVATSFVVLIVGAMAQG
Ga0209472_10954603	3300026323	Soil	MNAKVEGRIMNLSVEAKIAIAVATVFVVLIVGAMARG
Ga0209801_12881661	3300026326	Soil	QRVAAIIEGKIMNLSIEAKVAIAVATGLVVLIVGAMAQG
Ga0209266_11839333	3300026327	Soil	IQKQGGIGVAAIIEGKIMNLSVEAKVAIAVATGFVVLILGAMAQG
Ga0209377_11272411	3300026334	Soil	MWQRVAAIIEGKIMNLSIEAKVAIAVATGLVVLIVGAMAQG
Ga0209378_11146352	3300026528	Soil	SKKRGQQVAAIIEGKIMNLSIEAKVAIAVATGLVVLIVGAMAQG
Ga0209056_105758892	3300026538	Soil	GGGIGVAAIIEGKIMNLSVEAKVAIAVATSFIVLIVGAMAQG
Ga0209474_101660831	3300026550	Soil	PAIIEGKIMNLSVEAKVAIAVATGFVLLIVGAMAQG
Ga0209588_12079741	3300027671	Vadose Zone Soil	AIIEGEIMNLSIEAKVAIAVATGFVVFILGAMAQG
Ga0268264_114371091	3300028381	Switchgrass Rhizosphere	KWGDVSVAVMEGKIMELSIETKVAIAVATGFVVLVVGAMAQG
Ga0307310_103598922	3300028824	Soil	VIGIAAVIEGKIMNLTVETKVAIVVATSFILLIVGAMAQG
Ga0307308_103341971	3300028884	Soil	KNSKTGVIGMAAIIAGKIMSLSVEAKVAIAVATSFVVLIVGAMAQG
Ga0170834_1088057051	3300031057	Forest Soil	VVIEVATIVERENIFMNLSVETKVAIAVATSFVVLMVGAMAQG
Ga0170824_1133358922	3300031231	Forest Soil	VCGRQIEGKIMNLSIEAKVVIAVATSLVALIVGAMAQG
Ga0170824_1222869202	3300031231	Forest Soil	AAIIEGKIMNLSVETKVAIAVATSFVILIVGAMAQG
Ga0307469_100893592	3300031720	Hardwood Forest Soil	MTAIIKGKIMNLSVEAKVAIAVATGFLVVIVGAMAQG
Ga0307473_102175702	3300031820	Hardwood Forest Soil	MTAIIKGKIMNLSIETKVAIAVATGFLVVIVGAMAQG
Ga0308175_1028252362	3300031938	Soil	VAAIIEGKIMNLSIEAKVAIAVATSLVLLTVGAMAQG

Hidden Markov Model


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