NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F079699

Metagenome / Metatranscriptome Family F079699

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F079699
Family Type Metagenome / Metatranscriptome
Number of Sequences 115
Average Sequence Length 59 residues
Representative Sequence CAVKGAGSLRVKVPPGNWFAPPGSNRSGGEGNEAVGASGVEGRVGDLASMQAVT
Number of Associated Samples 103
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 10.71 %
% of genes near scaffold ends (potentially truncated) 79.13 %
% of genes from short scaffolds (< 2000 bps) 70.43 %
Associated GOLD sequencing projects 98
AlphaFold2 3D model prediction Yes
3D model pTM-score0.13

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (76.522 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(11.304 % of family members)
Environment Ontology (ENVO) Unclassified
(31.304 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(64.348 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.13
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF08388GIIM 24.35
PF00078RVT_1 9.57
PF13340DUF4096 1.74
PF13360PQQ_2 1.74
PF12762DDE_Tnp_IS1595 1.74
PF00248Aldo_ket_red 0.87
PF08401ArdcN 0.87
PF09537DUF2383 0.87
PF03724META 0.87
PF07690MFS_1 0.87
PF13418Kelch_4 0.87
PF00149Metallophos 0.87
PF03544TonB_C 0.87
PF14559TPR_19 0.87
PF076945TM-5TMR_LYT 0.87
PF01047MarR 0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 115 Family Scaffolds
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 0.87
COG3187Heat shock protein HslJPosttranslational modification, protein turnover, chaperones [O] 0.87
COG3275Sensor histidine kinase, LytS/YehU familySignal transduction mechanisms [T] 0.87
COG4227Antirestriction protein ArdCReplication, recombination and repair [L] 0.87

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms83.48 %
UnclassifiedrootN/A16.52 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573000|GPBTN7E01C8WXRAll Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium540Open in IMG/M
3300001108|JGI12647J13326_101810All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha754Open in IMG/M
3300001159|JGI12650J13346_1003190All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha748Open in IMG/M
3300001356|JGI12269J14319_10064412All Organisms → Viruses → Predicted Viral2062Open in IMG/M
3300001356|JGI12269J14319_10064718All Organisms → Viruses → Predicted Viral2055Open in IMG/M
3300002245|JGIcombinedJ26739_101091661All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha685Open in IMG/M
3300003218|JGI26339J46600_10123244All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha619Open in IMG/M
3300003352|JGI26345J50200_1001670All Organisms → cellular organisms → Bacteria → Acidobacteria2004Open in IMG/M
3300003367|JGI26338J50219_1000212All Organisms → cellular organisms → Bacteria → Acidobacteria2835Open in IMG/M
3300003368|JGI26340J50214_10137437All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha615Open in IMG/M
3300003370|JGI26337J50220_1032196All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. UYPR2.512599Open in IMG/M
3300004152|Ga0062386_100358230All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1170Open in IMG/M
3300004478|Ga0068972_1584781All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha660Open in IMG/M
3300004633|Ga0066395_10024304All Organisms → cellular organisms → Bacteria2449Open in IMG/M
3300005167|Ga0066672_10507867All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300005175|Ga0066673_10029955All Organisms → cellular organisms → Bacteria2605Open in IMG/M
3300005177|Ga0066690_10088840All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1968Open in IMG/M
3300005180|Ga0066685_10809868All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium634Open in IMG/M
3300005180|Ga0066685_10888307All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium596Open in IMG/M
3300005332|Ga0066388_100166102All Organisms → cellular organisms → Bacteria2802Open in IMG/M
3300005332|Ga0066388_104282324All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium727Open in IMG/M
3300005332|Ga0066388_108434202Not Available513Open in IMG/M
3300005446|Ga0066686_11103589All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium510Open in IMG/M
3300005451|Ga0066681_10061389All Organisms → cellular organisms → Bacteria → Acidobacteria2079Open in IMG/M
3300005468|Ga0070707_101002364All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300005538|Ga0070731_10009112All Organisms → cellular organisms → Bacteria7507Open in IMG/M
3300005541|Ga0070733_10048892Not Available2647Open in IMG/M
3300005566|Ga0066693_10019515All Organisms → cellular organisms → Bacteria → Acidobacteria2036Open in IMG/M
3300005574|Ga0066694_10040305All Organisms → cellular organisms → Bacteria → Acidobacteria2106Open in IMG/M
3300005994|Ga0066789_10140836All Organisms → cellular organisms → Bacteria → Acidobacteria1026Open in IMG/M
3300006052|Ga0075029_100043159All Organisms → cellular organisms → Bacteria2594Open in IMG/M
3300006052|Ga0075029_100123714All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1572Open in IMG/M
3300006881|Ga0068865_100161543All Organisms → cellular organisms → Bacteria1709Open in IMG/M
3300009646|Ga0116132_1015777All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2808Open in IMG/M
3300009665|Ga0116135_1104134All Organisms → cellular organisms → Bacteria1029Open in IMG/M
3300010048|Ga0126373_10367404All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1455Open in IMG/M
3300010360|Ga0126372_10125114All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1996Open in IMG/M
3300010361|Ga0126378_10522241All Organisms → cellular organisms → Bacteria → Acidobacteria1302Open in IMG/M
3300010366|Ga0126379_10207815All Organisms → cellular organisms → Bacteria → Acidobacteria1889Open in IMG/M
3300010366|Ga0126379_10645777Not Available1148Open in IMG/M
3300010376|Ga0126381_100274511All Organisms → cellular organisms → Bacteria2297Open in IMG/M
3300010398|Ga0126383_11881758Not Available686Open in IMG/M
3300010398|Ga0126383_12889112All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha561Open in IMG/M
3300011082|Ga0138526_1152585All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae602Open in IMG/M
3300011265|Ga0151613_1023556All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300012096|Ga0137389_10684663All Organisms → cellular organisms → Bacteria → Acidobacteria881Open in IMG/M
3300012199|Ga0137383_10311414Not Available1153Open in IMG/M
3300012206|Ga0137380_11542363All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha549Open in IMG/M
3300012207|Ga0137381_11408188All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae589Open in IMG/M
3300012211|Ga0137377_10145293All Organisms → cellular organisms → Bacteria2270Open in IMG/M
3300012350|Ga0137372_10107310Not Available2333Open in IMG/M
3300012353|Ga0137367_10012751All Organisms → cellular organisms → Bacteria → Acidobacteria6688Open in IMG/M
3300012685|Ga0137397_11144095Not Available564Open in IMG/M
3300014151|Ga0181539_1128816All Organisms → cellular organisms → Bacteria1031Open in IMG/M
3300014157|Ga0134078_10242103All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium753Open in IMG/M
3300014489|Ga0182018_10569083All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha596Open in IMG/M
3300014501|Ga0182024_10743072All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1204Open in IMG/M
3300015241|Ga0137418_10228273All Organisms → cellular organisms → Bacteria → Acidobacteria1593Open in IMG/M
3300015241|Ga0137418_10691497Not Available784Open in IMG/M
3300016319|Ga0182033_10809214All Organisms → cellular organisms → Bacteria → Acidobacteria826Open in IMG/M
3300017955|Ga0187817_10087012Not Available1957Open in IMG/M
3300018007|Ga0187805_10008034All Organisms → cellular organisms → Bacteria4350Open in IMG/M
3300018008|Ga0187888_1192211All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300018040|Ga0187862_10281376All Organisms → cellular organisms → Bacteria1057Open in IMG/M
3300018433|Ga0066667_11721997All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium564Open in IMG/M
3300019885|Ga0193747_1017331Not Available1763Open in IMG/M
3300020199|Ga0179592_10040637All Organisms → cellular organisms → Bacteria2108Open in IMG/M
3300020583|Ga0210401_10102835All Organisms → Viruses → Predicted Viral2683Open in IMG/M
3300021080|Ga0210382_10065640All Organisms → cellular organisms → Bacteria1459Open in IMG/M
3300021086|Ga0179596_10053674All Organisms → cellular organisms → Bacteria → Acidobacteria1683Open in IMG/M
3300021088|Ga0210404_10223278All Organisms → cellular organisms → Bacteria1017Open in IMG/M
3300021401|Ga0210393_11329052All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium576Open in IMG/M
3300021432|Ga0210384_10207590All Organisms → cellular organisms → Bacteria1762Open in IMG/M
3300021474|Ga0210390_10702623All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae842Open in IMG/M
3300021479|Ga0210410_11050689All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium704Open in IMG/M
3300021479|Ga0210410_11490356All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae569Open in IMG/M
3300022502|Ga0242646_1036700All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola521Open in IMG/M
3300022527|Ga0242664_1002976All Organisms → Viruses → Predicted Viral1924Open in IMG/M
3300022529|Ga0242668_1137066All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha528Open in IMG/M
3300022532|Ga0242655_10006320All Organisms → Viruses → Predicted Viral2079Open in IMG/M
3300022726|Ga0242654_10009521All Organisms → Viruses → Predicted Viral2083Open in IMG/M
3300025878|Ga0209584_10227377All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300025921|Ga0207652_11333327All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha620Open in IMG/M
3300025939|Ga0207665_10496764All Organisms → cellular organisms → Bacteria942Open in IMG/M
3300027604|Ga0208324_1019481All Organisms → cellular organisms → Bacteria2106Open in IMG/M
3300027663|Ga0208990_1074833All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales972Open in IMG/M
3300027678|Ga0209011_1098994All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha849Open in IMG/M
3300027767|Ga0209655_10284972All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha534Open in IMG/M
3300027812|Ga0209656_10122142All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha1339Open in IMG/M
3300027874|Ga0209465_10030844All Organisms → cellular organisms → Bacteria2523Open in IMG/M
3300027884|Ga0209275_10103647All Organisms → Viruses → Predicted Viral1460Open in IMG/M
3300028536|Ga0137415_10038143All Organisms → cellular organisms → Bacteria → Acidobacteria4709Open in IMG/M
3300028776|Ga0302303_10028709Not Available2321Open in IMG/M
3300028860|Ga0302199_1173842All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha664Open in IMG/M
3300028874|Ga0302155_10299785All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha691Open in IMG/M
3300028906|Ga0308309_10128599All Organisms → Viruses → Predicted Viral2007Open in IMG/M
3300029817|Ga0247275_1029960Not Available1637Open in IMG/M
3300029953|Ga0311343_10596548All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae950Open in IMG/M
3300030007|Ga0311338_10259711Not Available1946Open in IMG/M
3300030053|Ga0302177_10061257Not Available2252Open in IMG/M
3300031247|Ga0265340_10288382All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha729Open in IMG/M
3300031259|Ga0302187_10319272All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae757Open in IMG/M
3300031708|Ga0310686_100838380All Organisms → cellular organisms → Bacteria → Acidobacteria1143Open in IMG/M
3300031744|Ga0306918_10868713All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha703Open in IMG/M
3300031954|Ga0306926_10129293Not Available3120Open in IMG/M
3300031981|Ga0318531_10551949All Organisms → cellular organisms → Bacteria → Proteobacteria522Open in IMG/M
3300032174|Ga0307470_10807067All Organisms → cellular organisms → Bacteria → Proteobacteria727Open in IMG/M
3300032180|Ga0307471_100038394All Organisms → cellular organisms → Bacteria3802Open in IMG/M
3300032180|Ga0307471_102148889All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha702Open in IMG/M
3300032180|Ga0307471_102180577All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha697Open in IMG/M
3300032205|Ga0307472_100580165Not Available985Open in IMG/M
3300032205|Ga0307472_102560917All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha519Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil11.30%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil11.30%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil6.96%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil6.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.96%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.22%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.22%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil4.35%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil4.35%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.48%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog3.48%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.61%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.61%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.74%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.74%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.74%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.74%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.74%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.74%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.87%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.87%
SedimentEnvironmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Sediment0.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.87%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.87%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.87%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.87%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.87%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.87%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.87%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.87%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.87%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.87%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.87%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573000Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)EnvironmentalOpen in IMG/M
3300001108Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3EnvironmentalOpen in IMG/M
3300001159Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2EnvironmentalOpen in IMG/M
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003218Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1EnvironmentalOpen in IMG/M
3300003352Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1EnvironmentalOpen in IMG/M
3300003367Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3EnvironmentalOpen in IMG/M
3300003368Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2EnvironmentalOpen in IMG/M
3300003370Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004478Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005994Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300009646Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150EnvironmentalOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011082Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011265Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 K-mer 55EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300014151Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaGEnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018008Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40EnvironmentalOpen in IMG/M
3300018040Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300019885Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022502Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022527Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022529Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022532Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022726Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025878Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)EnvironmentalOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027604Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027645Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027663Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027678Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027767Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028776Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1EnvironmentalOpen in IMG/M
3300028860Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_3EnvironmentalOpen in IMG/M
3300028874Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029817Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25EnvironmentalOpen in IMG/M
3300029953II_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300031247Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaGHost-AssociatedOpen in IMG/M
3300031259Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
N55_014891002189573000Grass SoilMKVFFKFVAGCAVKGGGPQRELDSPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASMQAVT
JGI12647J13326_10181013300001108Forest SoilNAVTGCAVKGGGPQRELNPPGNWFAPPGSNRSSGGGNEAAEAFDVEGRIGDSASVQAVT*
JGI12650J13346_100319013300001159Forest SoilAVTGCAVKGGGPQRELNPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASVQAVT*
JGI12269J14319_1006441223300001356Peatlands SoilHLNWXINPXXXCAVKGAGSLWVKVPPGNCFAPPGSNQSGDRGNEVVGASGVEGRLGDLASMQAVT*
JGI12269J14319_1006471813300001356Peatlands SoilMEGHSASLRCAVKGASPQRVRVPPGSWFAPPGSNQSGDRGNEVVGASGVEGRLGDLASMQAVT*
JGIcombinedJ26739_10109166113300002245Forest SoilGCAVKGGGPQRELNPPGNWFAPPGSNRSSGGGNEAAEAFDVEGRIGDSASVQAVT*
JGI26339J46600_1012324413300003218Bog Forest SoilINAVTVCAVKGGGPQRELNPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASVQAVT
JGI26345J50200_100167013300003352Bog Forest SoilNAETGCAVKGGGPQREINPPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASVQAVT*
JGI26338J50219_100021233300003367Bog Forest SoilVKGGGPQREINPPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASVQAVT*
JGI26340J50214_1013743723300003368Bog Forest SoilVTCLINAVIVCAVKGGGPQRELNLPGNWFASPGSNRSSGGGNEAAEAFGVEGRIGDSASVQAVT*
JGI26337J50220_103219613300003370Bog Forest SoilVNSIXXSLHFSCAVKGAGQQWVQIPPGNWIAPPGSNRSSGGSNEAAEASGVEGREGDLASMQAVM*
Ga0062386_10035823013300004152Bog Forest SoilASLHRKCAVKGAGQQWVKFPPGNWFAPPGSNRSSCGGNEAAGASGVEGRAGDSASMQAVME*
Ga0068972_158478113300004478Peatlands SoilQLAKNRDYTCAVKGAGSLWVKVPPGNCFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASVQAVT*
Ga0066395_1002430433300004633Tropical Forest SoilMKSGLPFVPTLTLNRDYTRAVRSADQLRVKVPPENWFAPLGSNRSGGQGNEAVGASGVEGRLGDLASMQAVT*
Ga0066672_1050786713300005167SoilSSPDLSCAVESAGPLRVKAPPENWFAPLGSNRSGGRGNKAVGASGVEGHFGDLASM*
Ga0066673_1002995523300005175SoilVPGNALTGCAVKGGGPQRELNPPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASVQAVT*
Ga0066690_1008884013300005177SoilKSAGPPRVKVPPGNCFAPPGSDRSGGGGNEAVGACGVEGRLGDLASMQAVR*
Ga0066685_1080986823300005180SoilVKGASPPRVKVPPGNWFAPPGSNRSGGGGNEAVGASGVEGRLGDLASMQAV
Ga0066685_1088830723300005180SoilVKGAGSLRVKLPPGNWFAPPGSNRSGGEGNEAVGASGVEGRLGDLASMQA
Ga0066388_10016610213300005332Tropical Forest SoilMKSGLPFVPTLTLNRDYTRAVRSADQLRVQVPPENWFAPLGSNRSGGQGNEAIGASGVEGRLGDLASMQAVT*
Ga0066388_10428232413300005332Tropical Forest SoilMSNLQLPVNDLTACVVKGDGPQREVNPRGNWFAPPGSNQSSSGGNETAEAPGAEGRLSDSASLQAVT*
Ga0066388_10843420223300005332Tropical Forest SoilMTVVGLQAINPDYARAVRSADQLRVQVPPENWFAPLGSNRSGGQGNEAVGASGVEGRLGDLASMQAVT*
Ga0066686_1110358913300005446SoilTSLRCAVKGASPQRVKVPPGSWFAPPGSNQSGDRGNEVVGASGVEGRVGDLASMQAVT*
Ga0066681_1006138913300005451SoilTGCAVKGGGPQRELNPPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASVQAVT*
Ga0070707_10100236413300005468Corn, Switchgrass And Miscanthus RhizosphereCAVKGAGSLRVKVPPGNWFAPPGSNRSGGGGNEAVGASGVKGRLGDSASMQAVT*
Ga0070731_1000911223300005538Surface SoilVTVMVLVRREKGAGPQREKDPPGNWIAPPGSNRSGGGGNKAAGASGVQGRIGDLASL*
Ga0070733_1004889233300005541Surface SoilVKGAGQQRVQIPSGNWIAPPGSSQSSGGGDEAAEAFGVEGRVGDSASMQAVT*
Ga0066693_1001951523300005566SoilVKGGGPQRELNPPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASVQAVT*
Ga0066694_1004030513300005574SoilCAVKGGGPQRELNPPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASVQAVT*
Ga0066789_1014083613300005994SoilYTCAVKGAGSLRVKVPPGNWFAPPGSNRSGGGGDEAVGASGVEGRLGDSASMQAVT*
Ga0075029_10004315923300006052WatershedsMCAVKGAGQQWVQVPPGNWIAPPGSNRSDGGGNEAVGAFGVEGRRGDLASLQAVKE*
Ga0075029_10012371413300006052WatershedsCAVKGAGQQWVQIPPGNWIAPPGSNRSSGGGNEAAEASGGEGREGDLASMQAVT*
Ga0068865_10016154323300006881Miscanthus RhizosphereVKGDGPQRELNPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASMQAVT*
Ga0116132_101577713300009646PeatlandMCAVKGAGQQWVRVPPGNWIAPPGSNRSGGRGDEAVGAFGVEGRRGDLASLQAVKR*
Ga0116135_110413423300009665PeatlandDRFAEVIGGSQNPTNPISVCAVKGAGPQRVQIPPGNWFAPPGSNRSSSGGDETAEASGVEGRLGDLASL*
Ga0126373_1036740413300010048Tropical Forest SoilMLSRRYACAVKGAGPLRVQVPPGNWFAPPGSNRSGGGGNETVGASGVEGHLGDL
Ga0126372_1012511433300010360Tropical Forest SoilLRCAVKSASPQRVRVPPGSWFAPPGSNQSGGRGNEVVGASGVEGRLGDLASMQAVT*
Ga0126378_1052224123300010361Tropical Forest SoilVSNGIKGNQLCAAEGADLQRVKVPPGNWFAPPGSNRSGGGGNEAAEASDGKGRVGDPVSL
Ga0126379_1020781513300010366Tropical Forest SoilMLSRRYACAVKGAGPLRVQVPPGNWFAPPGSNRSGGGGNETVGASGVEGHLGDLASMQAV
Ga0126379_1064577723300010366Tropical Forest SoilSHLLTNLDYTRAVRSAEQLRVKVLPENWFAPLGSNRSGGRGNVAVGASGVEGRLGDLASMQAVT*
Ga0126381_10027451113300010376Tropical Forest SoilVRSADQLRVQVPPENWFAPLGSNRSGGQGNEAVGASGVEGRLGDLASMQAVT*
Ga0126383_1188175813300010398Tropical Forest SoilMAINRYYTRAVRSADQLRVKVPPENWFAPLGSNRSGGRGNEAVGASGAEGRLGDLASLQAVT*
Ga0126383_1288911213300010398Tropical Forest SoilACVVKGDGPQRELNPPGNWFAPPGSNQGSRGGNETAEASGAEGRLSDSASLQAVT*
Ga0138526_115258523300011082Peatlands SoilRGAVLERQLAKNRDYTCAVKGAGSLWVKVPPGNCFAPPGSNQSGDRGNEVVGASGVEGRLGDLASMQAVT*
Ga0151613_102355623300011265SedimentLNPTSACAVKGAESQWVQIPPGNWFVPPGSNRSSRGGNEAAEASGVEDRLGDLASL*
Ga0137389_1068466313300012096Vadose Zone SoilVKGGGPQRELNPPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASMQAVT*
Ga0137383_1031141433300012199Vadose Zone SoilRCAVKGAGPQRVKVPPGNWFAPPGSNRSSGGGNEAAGAFGVEGRIGDSASVQAVT*
Ga0137380_1154236313300012206Vadose Zone SoilTCAVKGAGSLRVKVPPGNWFAPPGSNRSGGEGNEAVGASGVEGRVGDLASMQAVT*
Ga0137381_1140818813300012207Vadose Zone SoilLSAPCKGGGPQRGVYPPGNWFAPPGSNWSSGGGNEAAEASDAEGRYGDLASVQAVT*
Ga0137377_1014529333300012211Vadose Zone SoilTTVLCAVKSAGPQRVKLPPENWFVPLGSNRSGGGDNKAVGASGVEGHFGDLASMQAVT*
Ga0137372_1010731013300012350Vadose Zone SoilKGAGPQRVKVPPGNWFAPPGSNRSSGGGNEAAGAFGVEGRIGDSASVQAVT*
Ga0137367_1001275113300012353Vadose Zone SoilSLRCAVKGASPQWVKVPPGNWFAPPGSNQSGDRGNEVVGASGVEGRVGDLASMQAVT*
Ga0137397_1114409513300012685Vadose Zone SoilKDGGPQRELNPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRVGDSVSMQAVT*
Ga0181539_112881623300014151BogKGAGQQWVQVPPGNWIAPPGSNRRGGRGDEAVGAFGVEGRGGDLASL*
Ga0134078_1024210313300014157Grasslands SoilQITCAVKGAGSLRVKLPPGNWFAPPGSNRSGGEGNEAVGASGVEGRVGDLASMQAVT*
Ga0182018_1056908323300014489PalsaGGSFAGTARKLNGLRNDSPHFPCAVKGAGQQWVQVPPGNWIAPPGSNRSSGGGNEAAEASGVEGREGDLASMQAVT*
Ga0182024_1074307213300014501PermafrostVVEATLFAVPVSRETGCAVKRRWSTAGVNPPGNWFAPPGSNQSSSGGNEAAEASGEEGREGDLA
Ga0137418_1022827313300015241Vadose Zone SoilCAVKGGGPQRELNPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASMQAVT*
Ga0137418_1069149723300015241Vadose Zone SoilFFVSMHSKRAVKGASPQRGYTRPGTGFAPPGSNQSSGGGNEAAEASGAERRYGDLASVQAVTT*
Ga0182033_1080921413300016319SoilISPHFSCAVKGAGQQWVQVPPGNWIAPPGSNRSSGGGNEAAEASGGEGREGDLASIQAVM
Ga0182035_1095369513300016341SoilMRCAVESASPQRVRVPPGSWFAPPGSNQSGDRGNEVVGASGVESRLGDLAS
Ga0187817_1008701223300017955Freshwater SedimentLRCAVKSASPQRVRVPPGSWFAPPGSNQSDDGGNEVVGASGEEGRLGDLASMQAVT
Ga0187805_1000803463300018007Freshwater SedimentLRCAVKGASPQRVKVPPGSWFAPPGSNQSGDRGNEVVGASGVEGRVGDLASMQAVT
Ga0187888_119221123300018008PeatlandMCAVKGAGQQWVQVPPGNWIAPPGSNRRGGRGDEAVGAFGVEGRGGDLASL
Ga0187862_1028137623300018040PeatlandGLLSSNPLYACAVKGVGRLRVKVPPGNWFAPPGSNRSGGEGNEAVGASGVEGRLGDLASMQAVT
Ga0066667_1172199713300018433Grasslands SoilCAVKGAGSLRVKVPPGNWFAPPGSNRSGGEGNEAVGASGVEGRVGDLASMQAVT
Ga0193747_101733123300019885SoilRTCLMCAVKSAGPLQVQVLPGSWFVPPGSNRSGGGGNKAVGASGVEGRYGDLASM
Ga0179592_1004063713300020199Vadose Zone SoilCRLIGCAVKGGGPQRELNPSGNWFAPPGSNRSSGGGNKAAEAFGVEGRIGDLASVQAVT
Ga0210401_1010283513300020583SoilSALMCAVKSASPLQVQVLPGSWFVPPGSNRSGGGGNKAVGASGVEGRYGDLASV
Ga0210382_1006564013300021080Groundwater SedimentKNRLYTCAVKGAGSLRVKVPPGNWFVPPGSNRSGGGGDEAVGASGVEGRLGDLASMQAVT
Ga0179596_1005367423300021086Vadose Zone SoilQVLINAEIGCAVKGGGPQRELNLPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASMQAVT
Ga0210404_1022327823300021088SoilAVKGAGPQRDEDPPGNWIAPPGSNRSGGGGNKAVGASGVEGRYGDLASV
Ga0210393_1132905213300021401SoilSMSTKPSYQCAVKGAGQQWVKFPPGNWFAPPGSNRSSRGGNEAAGASGVEGRSGDLASMQAVME
Ga0210384_1020759013300021432SoilNAVIGCAVKGGGPQRELDPPGNWFAPPGSNQSSSGGNETAEASGAEGRKGDLASMQAVT
Ga0210390_1070262313300021474SoilLSGKLLSNGVLVCAVKGAGPQRGYTRPGNWFAPPGSNQSSSGGNETAEASGAEGRKGDLASVQAVT
Ga0210410_1105068913300021479SoilMGLQCAVKGTEPQREINPPGNWIAPPGSNRSGGGDNKAAGASGVEGRVR
Ga0210410_1149035613300021479SoilHGLRPSTTVLCAVKSAGPLRVRVPPENWFVPLGSNRSGGRGNKAVGASGVEGHMGDLASM
Ga0242646_103670013300022502SoilGLPLAYIGKCAVKGAGQQRVQIPSGNWIAPPGSSRSSGGGDEAAEAFGVEGRVGDSASMQAVT
Ga0242664_100297613300022527SoilSPLQVQVLPGSWFVPPGSNRSGGGGNKAVGASGVEGRYGDLASV
Ga0242668_113706613300022529SoilVKGAGQQWVQFPPGNWIAPPGSNRSSGGSNETAEASGVEGREGDLASMQAVM
Ga0242655_1000632013300022532SoilQVQVLPGSWFVPPGSNRSGGGGNKAVGASGVEGRYGDLASV
Ga0242654_1000952113300022726SoilAVKSASPLQVQVLPGSWFVPPGSNRSGGGGNKAVGASGVEGRYGDLASV
Ga0209584_1022737713300025878Arctic Peat SoilAFSQCAVKGADPQRVRVPPGSWFVPPGSNRSSSGGDEAAEAFDAEGREGDLANLQAVNMNER
Ga0207652_1133332713300025921Corn RhizosphereTIKSWVGSPGNALAGCAVKGGGPQRELDPPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASVQAVT
Ga0207665_1049676423300025939Corn, Switchgrass And Miscanthus RhizosphereFDECNRDYTRAVKSADQLRVKVPPENWFAPLGSNRSGGRGNEAVGASGVEGRLGDLASMQAVT
Ga0208324_101948133300027604Peatlands SoilLLINPDYTCAVKGAGSLWVKVPPGNCFAPPGSNQSGDRGNEVVGASGVEGRLGDLASMQAVT
Ga0209117_104829133300027645Forest SoilMIKDVITTLRCAVKGASPQWVKVPPGSWFAPPGSNQSGDRGNEVVGASGVEG
Ga0208990_107483313300027663Forest SoilTLWCAVKGTDPQREINPPGNWFVPPGSNRSNGGGNEVVGAFGVEGRDSDSASMQAVM
Ga0209011_109899413300027678Forest SoilPKLRLTNAETGCAVKGGGPQRELNPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSASVQAVT
Ga0209655_1028497223300027767Bog Forest SoilVNSISVSLHFSCAVKGAGQQWVQIPPGNWIAPPGSNRSSGGSNEAAEASGVEGREGDLASMQAVM
Ga0209656_1012214233300027812Bog Forest SoilLPLLLKDADKTAFSDVTCLINAVIVCAVKGGGPQRELNLPGNWFASPGSNRSSGGGNEAAEAFGVEGRIGDSASVQAVT
Ga0209166_1037644613300027857Surface SoilMLGLSAVHREAASTTVLCAVKGVGQQRVQVPPGNWFAPPGSNRSSGRGDKAAGASGVEGREGDLASMQAVM
Ga0209465_1003084423300027874Tropical Forest SoilMKSGLPFVPTLTLNRDYTRAVRSADQLRVKVPPENWFAPLGSNRSGGQGNEAVGASGVEGRLGDLASMQAVT
Ga0209275_1010364713300027884SoilMCAVKSASPLQVQVLPGSWFVPPGSNRSGGGGNKAVGASGVEGRYGDLASV
Ga0137415_1003814313300028536Vadose Zone SoilMLRTPRVASAAGRLRPNGIIGCAVKRRWSTAGVNPPGNWFAPPGSNQSSSGGNETAEASGAEGRNGDLASVQAVT
Ga0302303_1002870933300028776PalsaVLRCRTSGSLLCAVKSAGPLRVKVPPGNWFVPPGSNRSGGGGNKAVGASGVEGRYGDLAS
Ga0302199_117384223300028860BogNHKQDSRKRAFNPHFSCAVKGAGQQWVQVPPGNWIAPPGSNRSSGGGNEAAEASGVEGREGDLASMQAVM
Ga0302155_1029978513300028874BogAFNPHFSCAVKGAGQQWVQVPPGNWIAPPGSNRSSGGGNEAAEASGVEGREGDLASMQAV
Ga0308309_1012859913300028906SoilPLLDSTCAVKSASPLQVQVLPGSWFVPPGSNRSGGGGNKAVGASGVEGRYGDLASV
Ga0247275_102996023300029817SoilIVSTGVKGSQLCAVKGAGLQRVKIPPGNWFAPPGSNWGGGGGNEAAEASDGKGRIGDSTS
Ga0311343_1059654833300029953BogLAYIGMCAVKGAGQQRVQIPSGNWIAPPGSSRSSGGGDEAAEAFGVEGRVGDSASMQAVM
Ga0311338_1025971113300030007PalsaCAVKSAGPLRVKVPPGNWFVPPGSNRSGGGGNKAVGASGVEGRYGDLASM
Ga0302177_1006125713300030053PalsaAPLLDSTCAVKSAGPLRVKVPPGNWFVPPGSNRSGGGGNKAVGASGVEGRYGDLASM
Ga0265340_1028838213300031247RhizosphereVVSLPGSCAVKGAGSLRVKVPPGNWFAPPGSNRSGGEGNEAVGASGVEGRLGDLASMQAV
Ga0302187_1031927213300031259BogYIGMCAVKGAGQQRVQIPSGNWIAPPGSSRSSGGGDEAAEAFGVEGRVGDSASMQAVM
Ga0310686_10083838023300031708SoilCAVKGAGPQWVQFPPGNWIAPPGSNRSSGGSNEAAEASGAEGRVGDLASMQAVM
Ga0306918_1086871323300031744SoilFRCAVKSAGLLRVQVPPESWFAPLGSNRSGGGGNETAGASGVEGRYGDLASMQAVT
Ga0306926_1012929363300031954SoilMLEPPPSTTVLCAVKSAGPLRVKVPPENWFVPLGSNRSGGGGNKAVGASGVEGRYGDLAS
Ga0318531_1055194923300031981SoilSKILVNGQTVCVVKGDGPQRELNPPGNWFAPPGSNQSSSGGNETAEASGAEGRLSDSASLQAVT
Ga0307470_1080706713300032174Hardwood Forest SoilRRLTLAGRYTRAVKSADQLRVKVPPENWFAPLGSNRSGGRGNEAVGASGVEGRLGDLASMQAVT
Ga0307471_10003839413300032180Hardwood Forest SoilVFQQPASTTVLCAVKSAGPLRVKVPPENWFVPLGSNRSGGGGNKAVGASGVEGHMGDLAS
Ga0307471_10214888913300032180Hardwood Forest SoilRWRVSDAIGCAVKGGGPQRELNPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSVSMQAVT
Ga0307471_10218057713300032180Hardwood Forest SoilRLLNQAANAAAGCAVKGGGPQRELDPPGNWFAPPGSNQSSSGGNETAEASGAEGRKGDLASMQAVT
Ga0307472_10058016513300032205Hardwood Forest SoilEKYTRHSSQLLVSRVLGCAVKGGGPLRELNPPGNWFAPPGSNRSGGGGNEAAEAFGVEGRMGDLASMQAVT
Ga0307472_10256091713300032205Hardwood Forest SoilCAVKGGGPQRELNPPGNWFAPPGSNRSSGGGNEAAEAFGVEGRIGDSVSMQAVT

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.