Metagenome Family F079474

Basic Information
Family ID	F079474
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	47 residues
Representative Sequence	EVTDAKQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Number of Associated Samples	85
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	26.96 %
% of genes from short scaffolds (< 2000 bps)	25.22 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (79.130 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (42.609 % of family members)
Environment Ontology (ENVO)	Unclassified (43.478 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.217 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.04% β-sheet: 8.70% Coil/Unstructured: 78.26%
Feature Viewer

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Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF03524	CagX	47.83
PF03743	TrbI	5.22
PF07603	DUF1566	0.87
PF00078	RVT_1	0.87
PF04335	VirB8	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG3504	Type IV secretory pathway, VirB9 components	Intracellular trafficking, secretion, and vesicular transport [U]	47.83
COG2948	Type IV secretory pathway, VirB10 component	Intracellular trafficking, secretion, and vesicular transport [U]	5.22
COG3736	Type IV secretory pathway, component VirB8	Intracellular trafficking, secretion, and vesicular transport [U]	0.87

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.13 %
All Organisms	root	All Organisms	20.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.13 %
cellular organisms	root	All Organisms → cellular organisms	20.00 %
Viruses	superkingdom	All Organisms → Viruses	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.13 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	20.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.13 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	19.13 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.13 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	19.13 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.13 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	19.13 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.87 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.13 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	19.13 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.87 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300009621\|Ga0116116_1200250	Not Available	511	Open in IMG/M
3300009635\|Ga0116117_1207859	Not Available	519	Open in IMG/M
3300014161\|Ga0181529_10688235	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	528	Open in IMG/M
3300014492\|Ga0182013_10543861	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	599	Open in IMG/M
3300014838\|Ga0182030_10353940	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1567	Open in IMG/M
3300014839\|Ga0182027_12268414	Not Available	514	Open in IMG/M
3300018019\|Ga0187874_10417221	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	541	Open in IMG/M
3300018023\|Ga0187889_10056212	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2083	Open in IMG/M
3300021180\|Ga0210396_10186751	All Organisms → Viruses → Predicted Viral	1855	Open in IMG/M
3300023068\|Ga0224554_1130310	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	558	Open in IMG/M
3300023101\|Ga0224557_1061848	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1672	Open in IMG/M
3300026502\|Ga0255350_1140782	Not Available	500	Open in IMG/M
3300028087\|Ga0255354_1097694	Not Available	517	Open in IMG/M
3300028566\|Ga0302147_10030453	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1950	Open in IMG/M
3300028762\|Ga0302202_10005995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	12247	Open in IMG/M
3300028785\|Ga0302201_10358489	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	571	Open in IMG/M
3300028785\|Ga0302201_10374924	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	555	Open in IMG/M
3300028857\|Ga0302289_1115060	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	618	Open in IMG/M
3300028860\|Ga0302199_1277618	Not Available	501	Open in IMG/M
3300029907\|Ga0311329_10178965	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1646	Open in IMG/M
3300029911\|Ga0311361_11446389	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	523	Open in IMG/M
3300029914\|Ga0311359_10235669	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1570	Open in IMG/M
3300030007\|Ga0311338_11973878	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	519	Open in IMG/M
3300030041\|Ga0302274_10100314	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1563	Open in IMG/M
3300030044\|Ga0302281_10371502	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	556	Open in IMG/M
3300030507\|Ga0302192_10370627	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	588	Open in IMG/M
3300030508\|Ga0302185_10263685	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	581	Open in IMG/M
3300030687\|Ga0302309_10512998	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	571	Open in IMG/M
3300031236\|Ga0302324_100568914	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1634	Open in IMG/M
3300031708\|Ga0310686_108076549	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	501	Open in IMG/M
3300034065\|Ga0334827_223724	Not Available	556	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.26%
Host-Associated	Host-Associated	1.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.26%
Aquatic	Environmental → Aquatic	20.00%
Plants	Host-Associated → Plants	1.74%

Habitat	Taxonomy	Distribution
Peat	Environmental → Terrestrial → Peat	60.00%
Freshwater	Environmental → Aquatic → Freshwater	20.00%
Soil	Environmental → Terrestrial → Soil	18.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	60.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	20.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	7.83%
Loam	Environmental → Terrestrial → Soil → Loam	1.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	60.00%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	13.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	8.70%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.22%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	42.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	11.30%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	9.57%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.09%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	5.22%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.22%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.61%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.74%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.74%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.87%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.87%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.87%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300009621	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014161	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022861	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25	Environmental	Open in IMG/M
3300023068	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300025460	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150 (SPAdes)	Environmental	Open in IMG/M
3300026456	Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r2	Environmental	Open in IMG/M
3300026502	Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r1	Environmental	Open in IMG/M
3300027634	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812S1M	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028087	Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T50	Environmental	Open in IMG/M
3300028090	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v15	Environmental	Open in IMG/M
3300028566	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2	Environmental	Open in IMG/M
3300028745	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3	Environmental	Open in IMG/M
3300028762	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3	Environmental	Open in IMG/M
3300028785	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_2	Environmental	Open in IMG/M
3300028788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2	Environmental	Open in IMG/M
3300028857	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_2	Environmental	Open in IMG/M
3300028860	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_3	Environmental	Open in IMG/M
3300028867	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_3	Environmental	Open in IMG/M
3300028874	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1	Environmental	Open in IMG/M
3300028909	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029919	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029982	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1	Environmental	Open in IMG/M
3300029988	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_3	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030011	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030041	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1	Environmental	Open in IMG/M
3300030044	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2	Environmental	Open in IMG/M
3300030051	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_2	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030507	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2	Environmental	Open in IMG/M
3300030508	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_2	Environmental	Open in IMG/M
3300030518	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2	Environmental	Open in IMG/M
3300030687	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031244	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_2	Environmental	Open in IMG/M
3300031259	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300034065	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0068868_1010733931	3300005338	Miscanthus Rhizosphere	FVASHRYRAFVSVTTQEVTDAKQAMVNPLGLYVTNLTWGEVVSTSGPSSAVGNDQTTDGGSGK*
Ga0116116_12002502	3300009621	Peatland	RQALVNPLGLYVTNLTWGEVVTTSGYAQTGNAQTMNGGSNK*
Ga0116117_12078592	3300009635	Peatland	VNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNR*
Ga0116121_10907121	3300009644	Peatland	QEVTDAKQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK*
Ga0116121_12654642	3300009644	Peatland	VSVVTQEVTDARQALVNPLGLYVTNLTWGEVVSTATDQPNSNTQSSNAQKPNGGQNQ*
Ga0116106_11411722	3300009645	Peatland	AFVSVVTQEVTDARQALVNPLGLYVTSLTWGEVVSMGTDQQSTNVQSGNAQKPKGGQNQ*
Ga0116135_12576511	3300009665	Peatland	RAFVSVVTQEVTDARQALVNPLGLYVTNLTWGEVVSTATDQPNSNTQSSNAQKPNGGQNQ
Ga0105239_107475032	3300010375	Corn Rhizosphere	AFVSVTTQEVTDAKQALVNPLGLYVTNLTWGEVVSTSGPSSAVGNDQTTDGGSGK*
Ga0137392_102708992	3300011269	Vadose Zone Soil	RAFVSVTTQEVTDAKQALVNPLGLYVTNLAWGEVVSTSGSSSAVGNDQTTKGGSGK*
Ga0181517_101487601	3300014160	Bog	NPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNR*
Ga0181529_106882351	3300014161	Bog	RYRAFVSVVTQEVTDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQSVNGGNNR*
Ga0181537_109066062	3300014201	Bog	LINPLGLYVTNLTWGEVVSTSGPSSAVANDQTTDGGSGK*
Ga0182014_106104441	3300014491	Bog	QEVTDARQALVNPLGLYVTNLTWGEVVSTATDQPNSNTQSSNAQKPNGGQNQ*
Ga0182013_100948453	3300014492	Bog	AFVSVVTQEVTDARQALVNPLGLYVTSLTWGEVVSMGTDQQSTNVQSGNAQKPNGGQNQ*
Ga0182013_105438612	3300014492	Bog	VVTQEVTDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQSVNGGNNR*
Ga0182024_110308892	3300014501	Permafrost	VSVVTQEVTDAKQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNSK*
Ga0182030_101149861	3300014838	Bog	LGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNSR*
Ga0182030_103539403	3300014838	Bog	NPLGLYVTNLTWGEVVTTGGDAQTGIAQTVNGGNNR*
Ga0182030_105080951	3300014838	Bog	NPLGLYVTNLTWGEVVTTGGDAQTGNAQSVNGGNNR*
Ga0182027_122684141	3300014839	Fen	KQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK*
Ga0187879_105217292	3300017946	Peatland	QEVTDAKQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0187847_100265551	3300017948	Peatland	PLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNR
Ga0187847_104472471	3300017948	Peatland	RAFVSVVTQEVTDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQSVNGGNNR
Ga0187872_103158621	3300018017	Peatland	VSVVTQEVTDARQALVNPLGLYVTSLTWGEVVSMGTDQHSTNVQSGNAQKPNGGQNQ
Ga0187874_104172211	3300018019	Peatland	FVSVVTQEVTDAKQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0187889_100562121	3300018023	Peatland	HRYRAFVSVVTQEVTDARQALVNPLGLYVMSLTWGEVVSMGTDQQSTNVQSGNAQKPNGGQNQ
Ga0187867_102578422	3300018033	Peatland	SVVTQEVTDARQALVNPLGLYVTNLTWGEVVSTATDQPNSNTQSSNAQKPNGGQNQ
Ga0187862_101454241	3300018040	Peatland	TDARQALVNPLGLYVTNLTWGEVVTTSGYAQTGNAQTMNGGSNK
Ga0187887_100512253	3300018043	Peatland	VTDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNSK
Ga0187887_100567793	3300018043	Peatland	AFVSVVTQEVTDARQALVNPLGLYVTSLTWGEVVSMGTDQQSTNVQSGNAQKPKGGQNQ
Ga0187890_103907171	3300018044	Peatland	ALVNPLGLYVTNLTWGEVVTTGGDSQTGNAQTVNGGNNK
Ga0187851_102059832	3300018046	Peatland	QDVTDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQILNGGNGK
Ga0187852_11678841	3300019082	Peatland	ALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0182025_11677271	3300019786	Permafrost	TQEVTDAKQALANPLGLYVTNLTWGEVVSTSGPSSAVGSEQTTNGGSGK
Ga0210396_101867511	3300021180	Soil	TTQEVTDARQALINPLGLYVTNLTWGEVVSTSGPSSAVANDQTTDGGSGK
Ga0210386_103638042	3300021406	Soil	VNPLGLYVTNLTWGEVVSTSGPSSAVGSEQTPNGGFGK
Ga0210392_108163991	3300021475	Soil	DAKQALINPLGLYVTNLTWGEVVSTSGPSSAVGSEQTPNGGFGK
Ga0126371_104722293	3300021560	Tropical Forest Soil	VTVNTQEVTDPKQALINPLGLYVTNVSWGEVVSSGISNGAGQSTDGGQSR
Ga0126371_136420211	3300021560	Tropical Forest Soil	TVNTQEVTDPKQALINPLGLYVTNVSWGEVVSSGPSNGAAQSTDGGQSR
Ga0224528_10054241	3300022861	Soil	ARQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQSVNGGNNR
Ga0224554_11303101	3300023068	Soil	QALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0224558_11131322	3300023090	Soil	DLSGGLVATHRYRAFVSVVTQEVTDAKQALVNPLCLYVTNLTWGEVVTTGGDAQNGNAQTMNGGNNK
Ga0224557_10618481	3300023101	Soil	TDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGIAQTVNGGNNR
Ga0208562_10666211	3300025460	Peatland	NPLGLYVTNLTWGEVVTTSGYAQTGNAQTMNGGSNK
Ga0255351_10701772	3300026456	Soil	AKQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0255350_11407822	3300026502	Soil	KQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0209905_10410281	3300027634	Thawing Permafrost	TQSRHWSTPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0209167_101811211	3300027867	Surface Soil	TQEVTDARQALINPLGLYVTNLTWGEVVSTSGPSSAVANDQTTDGGSGK
Ga0209624_103993552	3300027895	Forest Soil	TDAKQALINPLGLYVTNLTWGEVVSTSGPSSAVANDQTTDGGSGK
Ga0209624_109708341	3300027895	Forest Soil	NPLGLYVTNLAWGEVVSTSGSSSAVGNDQTTKGGSGK
Ga0255354_10032641	3300028087	Soil	HRYRAFISVVTQEVTDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGSAQTVNGGNNR
Ga0255354_10976941	3300028087	Soil	NPLGLYVTNLTWGEVVTTGGDAQAGNSQMVNGGLNK
Ga0255349_10973201	3300028090	Soil	VSVVTQEVTDARQALVNPLGLYVTNLTWGEVVSTATDQQNSNTQSSNAQKPNGGQNQ
Ga0302147_100304533	3300028566	Bog	TQEVTDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQSVNGGNNR
Ga0302147_101331862	3300028566	Bog	TDAKQALVNPLGLYVTNLTWGEVVTTGGDSQTGNAQTVNGGNNK
Ga0302267_101607482	3300028745	Bog	EVTDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQSVNGGNNR
Ga0302267_102246992	3300028745	Bog	LVNPLGLYVTNLTWGEVVTTGGDSQTGNAQTVNGGNNK
Ga0302202_1000599511	3300028762	Bog	EVTDAKQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0302201_103584891	3300028785	Bog	LVNPLGLYVTNLTWGEVVSTGGDAQTGNAQSVNGGNNR
Ga0302201_103749242	3300028785	Bog	VNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0302189_101937372	3300028788	Bog	VTQEVTDAKQALVNPLGLYVTNLTWGEVVTTGGDTQTGNAKTVNGGNNK
Ga0302289_11150601	3300028857	Fen	RAFVSVVTQEVTDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNR
Ga0302199_11695842	3300028860	Bog	PLGLYVTNLTWGEVVSTGGDAQTGNAQSVNGGNNR
Ga0302199_12776182	3300028860	Bog	DAKQALVNPLGLYVTNLTWGEVVTTGGDAQNGNAQTMNGGNNK
Ga0302146_103524291	3300028867	Bog	NGNLMSSHRYRAFVSVVTQEVTDARQALVNQLGLYVTSLTWGEVVSMGTDQQSTNVQSGNAQKPNGGQNQ
Ga0302155_101726741	3300028874	Bog	TDAKQALVNPLGLYVTNLTWGEVVTAGTNPQTTNAPIVNGGENK
Ga0302200_103678541	3300028909	Bog	FVSVVTQEVTDARQALVNPLGLYVTNLTWGEVVSTGGDAQTGNAQSVNGGNNR
Ga0311368_109007982	3300029882	Palsa	TDAKQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0311329_101789653	3300029907	Bog	LVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0311361_102187311	3300029911	Bog	VTQEVTDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQSVNGGNNR
Ga0311361_103918713	3300029911	Bog	IVTQEVTDARQALVNPLGLYVTNLTWGEVVSTATDQPNSNIQSSNAQKLNGGQNQ
Ga0311361_110708662	3300029911	Bog	EVTDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNSK
Ga0311361_114463892	3300029911	Bog	DVTDAKQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0311359_102356693	3300029914	Bog	RYRAFVSVVTQDVTDAKQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0311358_100166918	3300029915	Bog	RAFVSVVTQEVTDARQALVNPLGLYVTNLTWGEVVTTGGDAQIGNAQSVNGGNNR
Ga0302141_11112162	3300029919	Bog	VVTQEVTDARQALVNPLGLYVTNLTWGEVVSTATDQSNSNTQSSNAQKPNGGQNQ
Ga0311328_110043921	3300029939	Bog	VSVVTEEVTDAKQALVNPLGLYVTNLTWGEVVTTVTEAPTTNRSIVNGGDKR
Ga0311331_105766052	3300029954	Bog	TDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNSK
Ga0311342_106165862	3300029955	Bog	QALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQSVNGGNNR
Ga0302277_12345382	3300029982	Bog	AKQALVNPLGLYVTNLTWGEVVTTGGDTQTGNAKTVNGGNNK
Ga0302190_103426422	3300029988	Bog	NPLGLYVTNLTWGEVVTTGGDAQTGNAQSVNGGNNR
Ga0311338_119738782	3300030007	Palsa	RAFVSVVTQEVTDAKQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0302270_100730703	3300030011	Bog	VSVVTQEVTDARQALVNPLGLYVTNLTWGEVVSTGGDAQTGNAQSVNGGNNR
Ga0302270_102147881	3300030011	Bog	SVVTQEVTDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQSVNGGNNR
Ga0311344_101628303	3300030020	Bog	YRAFVSVVTQEVTDARQALVNPLGLYVTNLTWGEVVSTGGDAQTGNAQSVNGGNNR
Ga0311344_110902241	3300030020	Bog	EEVTDAKQALVNPLGLYVTNLTWGEVVTTATEAPTTNSPIVNGGNKK
Ga0311344_112003612	3300030020	Bog	FVSVVTQEVTDARQALVNPLGLYVTNLTWGEVVSTATDQPNSNIQSSNAQKLNGGQNQ
Ga0302274_101003141	3300030041	Bog	ARQALVNPLGLYVTNLTWGEVVSTGGDAQTGNAQSVNGGNNR
Ga0302281_103715022	3300030044	Fen	TQEVTDAKQALVNPLGLYVTNLTWGEVVTTGGDSQTGNAQTVNGGNNK
Ga0302195_101972651	3300030051	Bog	SVVTQEVTDAKQALVNPLGLYVTNLTWGEVVTTGGDTQTGNAKTVNGGNNK
Ga0302195_104087601	3300030051	Bog	ALVNPLGLYVTNLTWGEVVTTATEAPTTNSPIVNGGNKK
Ga0311370_118414171	3300030503	Palsa	NPLGLYVTNLTWGEVVTTATEAPTTNSPIVNGGDKK
Ga0302192_103706271	3300030507	Bog	RYRAFVSVVTQEVTDAKQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0302185_102636852	3300030508	Bog	QEVTDAKQALVNPLGLYVTNLTWGEVVTTGGDAQNGNAQTVNGGNNK
Ga0302275_103113951	3300030518	Bog	VVTQEVTDAKQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0302275_103148982	3300030518	Bog	TQEVTDAKQALVNPLGLYVTNLTWGEVVTTGGDTQTGNAKTVNGGNNK
Ga0302275_103614222	3300030518	Bog	QALVNPLGLYVTNLTWGEVVTTGGDAQIGNAQTVNGGNNK
Ga0302275_104755812	3300030518	Bog	HRYRAFVSVVTEDVTDAKQALVNPLGLYVTNLTWGEVVTTATEPPTTNGPIVNGGDKK
Ga0302309_105129981	3300030687	Palsa	VTDAKQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0311345_100305261	3300030688	Bog	AFVSVVTQDVTDAKQALVNPLGLYVTNLTWGEVVTTGGDAQIGNAQTVNGGNNK
Ga0311345_104460891	3300030688	Bog	PLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNK
Ga0302324_1005689143	3300031236	Palsa	FVSVVTEEVTDAKQALVNPLGLYVTNLTWGEVVTTATEAPTTNSPIVNGGDKK
Ga0302324_1017979032	3300031236	Palsa	VTDAKQALANPLGLYVTNLTWGEVVSTSGPSSAVGSEQTTNGGSGK
Ga0302297_10881602	3300031244	Fen	NPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNR
Ga0302187_104098252	3300031259	Bog	VTQEVTDARQALVNPLGLYVTNLTWGEVVSTAADQPNSNSQSSNAQKPNGGQNQ
Ga0302140_104476921	3300031261	Bog	LVNPLGLYVTNLTWGEVVTTGGDAQIGNAQTVNGGNNK
Ga0302320_102198491	3300031524	Bog	TQEVTDAKQALVNPLGLYVTNLTWGEVVTIGGDAQIGNAQTVNGGNNR
Ga0302320_109333901	3300031524	Bog	VSVVTEEVTDAKQALVNPLGLYVTNLTWGEVVTTVTEAPTTNGSIVNGGDKK
Ga0302320_112251262	3300031524	Bog	AKQALVNPLGLYVTNLTWGEVVTTGGDAQNGNAQTVNGGNNK
Ga0310686_1061009951	3300031708	Soil	DAKQALVNPLGLYVTNLTWGEVVTTGGDAQTGSVQTVNGGNNK
Ga0310686_1080765491	3300031708	Soil	VVTQEVTDARQALVNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNSK
Ga0302319_102355571	3300031788	Bog	VSVVTQEVTDARQALVNPLGLYVTSLTWGEVVSMGTDQQSTNVQSGNTQKPNGGQNQ
Ga0302319_110515741	3300031788	Bog	KQALVNPLGLYVTNLTWGEVVTTGGDAQIGNAQTVNGGNNK
Ga0334827_033421_1_108	3300034065	Soil	PLGLYVTNLTWGEVVTTGGDSQTGNAQTVNGGNNK
Ga0334827_223724_3_116	3300034065	Soil	VNPLGLYVTNLTWGEVVTTGGDAQTGNAQTVNGGNNR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F079474

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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