Metagenome / Metatranscriptome Family F079450

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079450
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	77 residues
Representative Sequence	MNTSPTFVANFADGEVARMTAFQSDKTLNLGRGVRLARAAYESRTKKTPPPIVEAHYERNGEVLESYEREQLDTVP
Number of Associated Samples	62
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	70.43 %
% of genes near scaffold ends (potentially truncated)	44.35 %
% of genes from short scaffolds (< 2000 bps)	85.22 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.043 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.783 % of family members)
Environment Ontology (ENVO)	Unclassified (65.217 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (69.565 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.23% β-sheet: 25.00% Coil/Unstructured: 55.77%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.1.2.1: Fibronectin type III	d4gs7b1	4gs7	0.592
d.16.1.3: D-aminoacid oxidase-like	d2gf3a2	2gf3	0.58888
c.97.1.1: Cytidine deaminase	d2z3ha_	2z3h	0.58286
d.16.1.3: D-aminoacid oxidase-like	d1ryia2	1ryi	0.57677
f.69.1.1: Perfringolysin N-terminal-like	d1pfoa1	1pfo	0.57556

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF13479	AAA_24	22.61
PF02075	RuvC	6.09
PF11300	DUF3102	4.35
PF14659	Phage_int_SAM_3	2.61
PF11523	DUF3223	1.74
PF03869	Arc	1.74
PF05930	Phage_AlpA	1.74
PF00589	Phage_integrase	1.74
PF07505	DUF5131	0.87
PF08401	ArdcN	0.87
PF05866	RusA	0.87
PF05063	MT-A70	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	Replication, recombination and repair [L]	6.09
COG3311	DNA-binding transcriptional regulator AlpA	Transcription [K]	1.74
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	1.74
COG4227	Antirestriction protein ArdC	Replication, recombination and repair [L]	0.87
COG4422	Bacteriophage protein gp37	Mobilome: prophages, transposons [X]	0.87
COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	Replication, recombination and repair [L]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.04 %
All Organisms	root	All Organisms	46.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.04 %
cellular organisms	root	All Organisms → cellular organisms	46.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31.30 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.48 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.04 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.26 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	10.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.04 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.70 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.74 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.87 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.04 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.70 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.74 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.87 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.04 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.74 %
Bradyrhizobium yuanmingense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium yuanmingense	0.87 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.87 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.87 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004633\|Ga0066395_10998052	Not Available	510	Open in IMG/M
3300005332\|Ga0066388_100924005	Not Available	1447	Open in IMG/M
3300005332\|Ga0066388_103105572	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300005332\|Ga0066388_104666178	Not Available	697	Open in IMG/M
3300005332\|Ga0066388_104959707	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300005363\|Ga0008090_14997297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	526	Open in IMG/M
3300005363\|Ga0008090_15001735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	560	Open in IMG/M
3300005363\|Ga0008090_15600584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	667	Open in IMG/M
3300005713\|Ga0066905_101371425	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300005764\|Ga0066903_100109530	All Organisms → cellular organisms → Bacteria	3779	Open in IMG/M
3300005764\|Ga0066903_100220222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	2876	Open in IMG/M
3300005764\|Ga0066903_100301420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2536	Open in IMG/M
3300005764\|Ga0066903_100978178	Not Available	1543	Open in IMG/M
3300005764\|Ga0066903_101518727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1266	Open in IMG/M
3300005764\|Ga0066903_101644226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1220	Open in IMG/M
3300005764\|Ga0066903_103355396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	865	Open in IMG/M
3300005764\|Ga0066903_104450938	Not Available	748	Open in IMG/M
3300005764\|Ga0066903_104558647	Not Available	739	Open in IMG/M
3300005764\|Ga0066903_104895230	Not Available	711	Open in IMG/M
3300005764\|Ga0066903_108617999	Not Available	519	Open in IMG/M
3300010046\|Ga0126384_10242269	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
3300010046\|Ga0126384_11131194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	719	Open in IMG/M
3300010046\|Ga0126384_11236039	Not Available	690	Open in IMG/M
3300010047\|Ga0126382_10709788	Not Available	845	Open in IMG/M
3300010358\|Ga0126370_12643959	Not Available	502	Open in IMG/M
3300010361\|Ga0126378_10112033	All Organisms → cellular organisms → Bacteria	2715	Open in IMG/M
3300010361\|Ga0126378_10395601	All Organisms → cellular organisms → Bacteria	1494	Open in IMG/M
3300010361\|Ga0126378_12975674	Not Available	540	Open in IMG/M
3300010362\|Ga0126377_10855229	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300010376\|Ga0126381_104033521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	571	Open in IMG/M
3300010398\|Ga0126383_10080973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2835	Open in IMG/M
3300010398\|Ga0126383_10194175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium yuanmingense	1943	Open in IMG/M
3300010398\|Ga0126383_10374066	Not Available	1453	Open in IMG/M
3300010398\|Ga0126383_10952177	Not Available	946	Open in IMG/M
3300010398\|Ga0126383_12378564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	615	Open in IMG/M
3300010398\|Ga0126383_13092982	Not Available	543	Open in IMG/M
3300012971\|Ga0126369_12227474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	635	Open in IMG/M
3300016270\|Ga0182036_10849558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	746	Open in IMG/M
3300016294\|Ga0182041_11422915	Not Available	637	Open in IMG/M
3300016319\|Ga0182033_10129460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1914	Open in IMG/M
3300016341\|Ga0182035_10777329	Not Available	839	Open in IMG/M
3300016341\|Ga0182035_11068269	All Organisms → cellular organisms → Bacteria → Proteobacteria	717	Open in IMG/M
3300016357\|Ga0182032_10576116	Not Available	934	Open in IMG/M
3300016357\|Ga0182032_11029778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	704	Open in IMG/M
3300016371\|Ga0182034_10345705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1206	Open in IMG/M
3300016371\|Ga0182034_11248021	Not Available	647	Open in IMG/M
3300016371\|Ga0182034_11875088	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300016387\|Ga0182040_10696115	Not Available	830	Open in IMG/M
3300016404\|Ga0182037_10725310	Not Available	852	Open in IMG/M
3300016422\|Ga0182039_10062254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2596	Open in IMG/M
3300016422\|Ga0182039_11942707	Not Available	541	Open in IMG/M
3300021560\|Ga0126371_11403343	Not Available	829	Open in IMG/M
3300021560\|Ga0126371_11935017	Not Available	708	Open in IMG/M
3300021560\|Ga0126371_12087026	Not Available	683	Open in IMG/M
3300031543\|Ga0318516_10048650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2300	Open in IMG/M
3300031545\|Ga0318541_10028778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2736	Open in IMG/M
3300031545\|Ga0318541_10088909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1644	Open in IMG/M
3300031545\|Ga0318541_10132678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1359	Open in IMG/M
3300031546\|Ga0318538_10194406	Not Available	1082	Open in IMG/M
3300031546\|Ga0318538_10543429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300031561\|Ga0318528_10688792	Not Available	547	Open in IMG/M
3300031572\|Ga0318515_10327952	Not Available	821	Open in IMG/M
3300031573\|Ga0310915_10072059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2278	Open in IMG/M
3300031640\|Ga0318555_10503232	Not Available	657	Open in IMG/M
3300031679\|Ga0318561_10590405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	612	Open in IMG/M
3300031719\|Ga0306917_10305276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1230	Open in IMG/M
3300031719\|Ga0306917_11398288	Not Available	540	Open in IMG/M
3300031719\|Ga0306917_11418431	Not Available	535	Open in IMG/M
3300031747\|Ga0318502_10260590	Not Available	1014	Open in IMG/M
3300031763\|Ga0318537_10366413	Not Available	532	Open in IMG/M
3300031771\|Ga0318546_10084063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2060	Open in IMG/M
3300031777\|Ga0318543_10565492	Not Available	510	Open in IMG/M
3300031793\|Ga0318548_10268431	Not Available	839	Open in IMG/M
3300031796\|Ga0318576_10500753	Not Available	573	Open in IMG/M
3300031797\|Ga0318550_10215582	Not Available	930	Open in IMG/M
3300031819\|Ga0318568_10855529	Not Available	563	Open in IMG/M
3300031845\|Ga0318511_10437093	Not Available	602	Open in IMG/M
3300031846\|Ga0318512_10625054	Not Available	550	Open in IMG/M
3300031879\|Ga0306919_11093058	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300031879\|Ga0306919_11492335	Not Available	509	Open in IMG/M
3300031890\|Ga0306925_10205136	Not Available	2127	Open in IMG/M
3300031890\|Ga0306925_10428750	Not Available	1415	Open in IMG/M
3300031890\|Ga0306925_10565889	Not Available	1204	Open in IMG/M
3300031890\|Ga0306925_10591392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1173	Open in IMG/M
3300031910\|Ga0306923_10123790	Not Available	2937	Open in IMG/M
3300031910\|Ga0306923_11184011	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300031912\|Ga0306921_10882856	Not Available	1016	Open in IMG/M
3300031912\|Ga0306921_10928534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	986	Open in IMG/M
3300031912\|Ga0306921_12054934	Not Available	607	Open in IMG/M
3300031941\|Ga0310912_10699119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	786	Open in IMG/M
3300031945\|Ga0310913_10047771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2784	Open in IMG/M
3300031945\|Ga0310913_10851284	Not Available	642	Open in IMG/M
3300031946\|Ga0310910_11461244	Not Available	525	Open in IMG/M
3300031947\|Ga0310909_10278721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1399	Open in IMG/M
3300031947\|Ga0310909_11035582	Not Available	669	Open in IMG/M
3300031954\|Ga0306926_10915640	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300031954\|Ga0306926_11488400	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	782	Open in IMG/M
3300031954\|Ga0306926_12444895	Not Available	574	Open in IMG/M
3300032001\|Ga0306922_10201996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2133	Open in IMG/M
3300032001\|Ga0306922_11493740	Not Available	676	Open in IMG/M
3300032025\|Ga0318507_10174440	Not Available	924	Open in IMG/M
3300032035\|Ga0310911_10822590	Not Available	537	Open in IMG/M
3300032039\|Ga0318559_10408068	Not Available	633	Open in IMG/M
3300032059\|Ga0318533_11261919	Not Available	540	Open in IMG/M
3300032060\|Ga0318505_10507251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	569	Open in IMG/M
3300032063\|Ga0318504_10408165	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300032066\|Ga0318514_10349669	Not Available	783	Open in IMG/M
3300032076\|Ga0306924_10210356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2233	Open in IMG/M
3300032076\|Ga0306924_10462032	Not Available	1449	Open in IMG/M
3300032261\|Ga0306920_100280360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2484	Open in IMG/M
3300032261\|Ga0306920_100341864	Not Available	2227	Open in IMG/M
3300032261\|Ga0306920_102283821	Not Available	750	Open in IMG/M
3300032261\|Ga0306920_103813436	Not Available	551	Open in IMG/M
3300032261\|Ga0306920_103831027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300033290\|Ga0318519_10347313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	876	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.22%
Loam	Environmental → Terrestrial → Soil → Loam	14.78%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	65.22%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.78%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	2.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.39%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	14.78%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	2.61%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_109980521	3300004633	Tropical Forest Soil	MSISRTFVAVFADGEVTRMTTFQSGKTLNLALGVRLARAAYESRTKQKSPPIIEARYERDGEALENYGRERLDAASHTKISRGDAA*
Ga0066388_1009240051	3300005332	Tropical Forest Soil	TSPTFVANFADGEVARMTAFQSDKTLNLGRGVRLARAAYESRTKKTPPPIVEAHYERNGEVLESYEREQLDTVP*
Ga0066388_1031055722	3300005332	Tropical Forest Soil	TFVAIFEDGEVARMTTFQSDKKLNLVRGARLARAAYESRTRRKSPPILEAHYERDGDVLESYGREQLDAVP*
Ga0066388_1046661782	3300005332	Tropical Forest Soil	VKGSSPVFTATFADGETTRMTVFQSREKLDFGRGVRLARAAYESRMRKGAPPIVEAHYECDGEVLESYGREQLDALSKEGAP*
Ga0066388_1049597072	3300005332	Tropical Forest Soil	MNTSPTFVATFADGETTRMTTYQAGKRLDLKRGVRLACAAYESRTKQKSPPIAEAHYERDGEILESYGREQLDALSKEGAP*
Ga0008090_149972972	3300005363	Tropical Rainforest Soil	MSVSPIFVATFADDEITRMSVFTSLKKLDMARGVRLARAAYESRKKQAPPPIVEAHYEHNDEVLEHYTRKQLDSVPFLRPEQS*
Ga0008090_150017352	3300005363	Tropical Rainforest Soil	MSTVFVATFADREVTRMSVFTSLKKLDMARGVRLARAAYESRMKQAPPAIIEAHFERNDEVLEHYTREQLDSVPSLRPEQS*
Ga0008090_156005841	3300005363	Tropical Rainforest Soil	APIAGDGTMSTSPTFVATFADGEVTRMSVFTSREKPDVGRGVRLARAAYESRMKRAAPPIVEARFERNGEILEHYTREQLDAMP*
Ga0066905_1013714251	3300005713	Tropical Forest Soil	TSPVFVAIFEDGEVARMTTFQKTKALDLDRGVRLARAAYESRAGQKSPPISETHYERDGEVLESYGREQLDAVP*
Ga0066903_1001095307	3300005764	Tropical Forest Soil	MNTSPTFVATFADGEVTRMTTFQSGKTLDLGRGVRLARAAYDSRMKKKSPPIVRAHYERDGETLTSYEREQLDEEGGAA*
Ga0066903_1002202225	3300005764	Tropical Forest Soil	MRQRVRIASPAFVATFADDEVTRMTVFQPGKTLDLGRGTRLARAAYESRTGKKPLPIVKAHYERDGEVLESYGREQLETVS*
Ga0066903_1003014207	3300005764	Tropical Forest Soil	MSTAGTSPTFVATFADGEVTRMTTQQSGKSLDLARGVRLARAAYESRTKKAAPPIIEAHFERESEVLQHYDAEELD*
Ga0066903_1009781783	3300005764	Tropical Forest Soil	MNTSPTFVANFADGEVARMTAFQSDKTLNLGRGVRLARAAYESRTKKTPPPIVEAHYERNGEVLESYEREQLDTVP*
Ga0066903_1015187274	3300005764	Tropical Forest Soil	MSTSPTFVATFADHEVTRMSVFTSREKLDLARGVRLARAAYESRMKQAAPPIIEAHYERDGEVLESYERKQLDGVS*
Ga0066903_1016442263	3300005764	Tropical Forest Soil	DGTMSTSPTFVATFADDEVTRMSVFTSREKLDMARGVRLARAAYESRMKRAAPPIVQAHYERNDEVVEHYTREQLDSVP*
Ga0066903_1033553963	3300005764	Tropical Forest Soil	DGTMSTSPTFVATFADDEVTRMSVFTSREKPDGGRGVCLARAAYESRMKQAAPPIVEALFERDGEVLEHYTREQLDAVP*
Ga0066903_1044509381	3300005764	Tropical Forest Soil	MTTSASFVAVFLGGELTRMSVFTSLKKLDMARGVRLARAAYESRMKQAAPAIVEAHFECDGEVLER
Ga0066903_1045586472	3300005764	Tropical Forest Soil	MSTSPAFVAVFEDGEVTRMTTFQSGKTLNLARGVRLARAAYESRTKQKSPPIIEARYERDDEVLKTYGREQLGAA*
Ga0066903_1048952302	3300005764	Tropical Forest Soil	MDTSAPIFVATFADGEVTRMTTFQSGKTLDLGRGARLARAAYDSRMKKKSPPIVRAHYERDGETLASYEREQLDEEGGAATPRGG*
Ga0066903_1086179991	3300005764	Tropical Forest Soil	MTTTFVATFLDGEVTRMSVFTSLEKLDMARGVRLARAAYESRMKQAPPAIIEAHFERNDEVLEHYTREQLDSVPSLRPEQS*
Ga0126384_102422692	3300010046	Tropical Forest Soil	MEPAMKGSSPVFTATFVDGETTRMTVFQSREKLDLGRGVRLARAAYESRMRKGAPPIVEAHYEDDGEVLESYGREQLDALSKEGAP*
Ga0126384_111311941	3300010046	Tropical Forest Soil	MSVSPIFVAIFADGEITRMTVFTHQKLDMARGVRLARAAYETRKKQVAPPIIEAHYERNDEVVEHYTREQLDAVP*
Ga0126384_112360392	3300010046	Tropical Forest Soil	MNTSPTFVATFADGEITRMTTFQSGKTLDLKRGVRLARAAYESRMRKTPPLIVEACYERDGEILESYEREQLGAVP*
Ga0126382_107097882	3300010047	Tropical Forest Soil	MNTSPTFVATFADGEVTRMTTFQKTKALDLARGMRLARAAYESRTKQKSPPIVEAHYERDGEVLESY
Ga0126370_126439591	3300010358	Tropical Forest Soil	RPRASPTFVATFTDGEVTRMTTFQSGKTLNLGRGVRLARTAYESRTKQMPPPIIEAHYERDGAVLESYERKQLDAVP*
Ga0126378_101120332	3300010361	Tropical Forest Soil	MEPAMKGSSPVFTATFVDGETTRMTVFQSREKLDLGRGVRLARAAYESRMRKGAPPIVEAHYERDGEVLESYGREQLDALSKEGAP*
Ga0126378_103956012	3300010361	Tropical Forest Soil	MNTSPIFVAIFEDGEVARMTTFQKTKALDLDRGVRLARAAYESRTGQKSPPISEAHYERDGEVLESYGREQLDAVP*
Ga0126378_129756742	3300010361	Tropical Forest Soil	MNTSPTFVAIFEDGEVARMTTFQSDKKLNLVRGARLARAAYESRAKQKSPPIIEAHYERDGEVLENYGREQLDAA
Ga0126377_108552293	3300010362	Tropical Forest Soil	MNTSPTFVAIFEDGEVARMTTFQSEKKLNLVRGARLARAAYESRTRRKSPPILEAHYERDGEVLESYGREQLDAVP*
Ga0126381_1040335212	3300010376	Tropical Forest Soil	MSGSPTFVATFADGEITRMTAFTSREKLDMTRGVRLARAAYESRMKSAAPPIVEARFERNGEILEHYTREQPDAVP*
Ga0126383_100809731	3300010398	Tropical Forest Soil	MSAVFVATFADHEVTRMTVFASSRKNLDMARGMRLARAAYESRMKQAASPIVEAYFERNGEILEHYSREQLDAV
Ga0126383_101941751	3300010398	Tropical Forest Soil	MSISPTFVATFADHEVTRMSVFTSLKKLDMARGVRLARAAYESRMKQVAPSIVEARFERDDEILRNYERKELDGVS*
Ga0126383_103740661	3300010398	Tropical Forest Soil	AGGMNTSPTFVATFADGEVTRMTTFQSGKTLDLGRGVRLARAAYDSRMKKKSPPIVRAHYERDGETLASYEREQLDEEGGAA*
Ga0126383_109521771	3300010398	Tropical Forest Soil	MSVSPIFVAIFADGEITRMTVFTHQKLDMARGVRLARAAYESRMKQAAPPIVEAHYERNDEVVEHYTREQLDAVQ*
Ga0126383_123785642	3300010398	Tropical Forest Soil	MSTSPTFVATFADGEITRMTAFTSREKLDMTRGVRLARAAYESRMKYAAPPIVEARFERNGEILEHYTREQLDAMP*
Ga0126383_130929822	3300010398	Tropical Forest Soil	MNTSPIFVAIFEDGEVTRMTTFQSDKKLNLVRGARLARAAYESRTRQKSPPIIEAHYERDGEVLESYEREELDVLSKEGAP*
Ga0126369_122274742	3300012971	Tropical Forest Soil	VAKGRVSARTLDARDGTMSTSPTFVATFADHEVTRMSVFTSREKLDLARGVRLARAAYESRMKQAAPPIIEAHYERDGEVLESYERKQLDGVS*
Ga0182036_108495581	3300016270	Soil	MNNSPTFVAIFEDGEIARMTAFQETKALDLGRAVRLARAAYESRAKQKSPPIIEAHYEHNGEVLENYGREQLGAVS
Ga0182041_114229152	3300016294	Soil	MNNSPTFVAIFEDGEITRMTTFHETKALDLGRGVRLARAAYESRAKQKLPPIIAAHYERNGEVLENYGRGQLGTVS
Ga0182033_101294602	3300016319	Soil	MTASPTFVAIFADGEVTRMTTFQPDKDLNLARGARLACAAYESRKKKTPPPLVRAHYERDGEVLESYGREQLDSLMGEAAALSAKD
Ga0182035_107773293	3300016341	Soil	MSTSATFVAVFEDGEITRMTAFQKTKALDLDRGVRLARAAYESRTKRKSPPIIEAYYERDGEALENYGREQLGAVS
Ga0182035_110682693	3300016341	Soil	VAAFADGEITRMTTFQSGKTLNLGRGVRLARAAYESRTKQTPPPIIEAHYERDGEVLESYEREQLDVP
Ga0182032_105761163	3300016357	Soil	VNGSSPVFTAIFVDGETTRMTVFQSREKLDLGRGVRLARAAYESRMRKDAPPIVAAHYERDGEIL
Ga0182032_110297782	3300016357	Soil	MSTSATFVAVFEDGETTRMTAFQKTKALDLGRGVRLARAAYESRTKQKSPPIIEARYERDGEMLKTYRREQLGAA
Ga0182034_103457051	3300016371	Soil	NSPTFVAIFENGEITRMTAFQETRALDLGPGVRLARAAYESRAKQKLPPIIAAHYERNGEVLENYGRGQLGTVS
Ga0182034_112480212	3300016371	Soil	DGEVTRMTTFQPDKDLNLARGARLACAAYESRKKKTPPPLVRAHYERDGEVLESYGREQLDSLRGEAAALSAKD
Ga0182034_118750881	3300016371	Soil	DDGINTSPTFVAVFEDGEVTRMTTFQETKGLDLGRGARLARAAYASRTKKAPPPIVEARYEYGSDVLESYRREQLDAVP
Ga0182040_106961151	3300016387	Soil	MSASPVFVAIFVGGETTRMTVFQSGKTLNLVRGVRLARAAYESRTKKTPPPIVEARYEHGSDVLESYRREQLDAVP
Ga0182037_107253102	3300016404	Soil	VRKPTTRVISPTFVAAFADGEITRMTTFQSGKTLNLGRGVRLARAAYESRTKQMPPPIIEAHYERDGAVLESYERKQLDAVP
Ga0182039_100622547	3300016422	Soil	MNTSPTFVAVFEDGEVTRMTTFQETKGLDLGRGARLARAAYASRTKKAPPPIVEAHYEYGSDVLESYRREQLEAVP
Ga0182039_119427071	3300016422	Soil	RGEQGRFAQLRGTFADGEAARMTVFQAENTLDLGRGVRLARAAYESRTKKTPPPIVEARYERDGEILESYEREQLDAVP
Ga0126371_114033432	3300021560	Tropical Forest Soil	MSTSPTFVATFADDEVTRMSVFTSREKLDMARGVRLARAAYESRMKRAAPPIVQAHYERNDEVVEHYTREQLDSVP
Ga0126371_119350172	3300021560	Tropical Forest Soil	VKGSSPVFTATFADGETTRMTVFQSREKLDFGRGVRLARATYESRMRKGAPPIVEAHYERDGEVLESYGREQLDALSKEGAP
Ga0126371_120870262	3300021560	Tropical Forest Soil	MDTSSPIFVATFADGEVTRMTTFQSGKTLNLALGVRLARAAYESRTKQKSPPIIEARYERDGEALENYGRERLDAASHTKISRGDAA
Ga0318516_100486504	3300031543	Soil	MNTSPTFAATFADGEVTRMTTFQKTKALDLARGVRLARAAYESRTKQKSPPIVEAHYERDGEVLESYEREELDVLSKEGAP
Ga0318541_100287785	3300031545	Soil	LATFTDGEVTRMTTFQSGMTLNLGRGVRLARAAYESRTKQMPPPIIEAHYERDGAVLESYKREQLDVP
Ga0318541_100889092	3300031545	Soil	MNTSPTFVAVFEDGEVTRMTTFQETKGLDLGRGARLARAAYASRTKKAPPPIVEARYEYGSDVLESYRREQLDAVP
Ga0318541_101326782	3300031545	Soil	MSASPVFVAIFVGGETTRMTVFQSGKTLNLVRGVRLARAAYESRTKKTPPPIVEARYERDGEILESYEREQLDAVP
Ga0318538_101944062	3300031546	Soil	MKPASDRRPRASPTFVATFTDGEVTRMTTFQSGMTLNLGRGVRLARAAYESRTKQMPPPIIEAHYERDGAVLESYKREQLDVP
Ga0318538_105434291	3300031546	Soil	MSTSPAFVAIFTDGEVTRMTTFQKTKALDLGRGVRLARAAYESRTKQKSPPIIEARYERDGEMLKTYRREQLGAA
Ga0318528_106887921	3300031561	Soil	VNGSSPVFTAIFVDGETTRMTVFQSREKLDLGRGVRLARAAYESRMRKDAPPIVAAHYERDGEILEH
Ga0318515_103279522	3300031572	Soil	MNNSPTFVAIFENGEITRMTAFQETRALDLGPGVRLARAAYESRAKQKLPPIIAAHYERNGEVLENYGRGQLGTVS
Ga0310915_100720594	3300031573	Soil	MTASPTFVAIFADGEVTRMTTFQPDKDLNLARGARLACAAYESRKKKTPPPLVRAHYERDGEVLESYGREQLDSLRGEAAALSAKD
Ga0318555_105032321	3300031640	Soil	SRKRGRHYFSRGERPMKPASDRRPRASPTFVATFTDGEVTRMTTFQSGMTLNLGRGVRLARAAHESRTKQMPPPIIEAHYERDGAVLESYKREQLDVP
Ga0318561_105904051	3300031679	Soil	MSASPTFVAIFADNETTRMTVFQTGKTLSLVRGVRLARAAYESRTKKTPPPIVEARYERDGEILESYEREQLDAVP
Ga0306917_103052763	3300031719	Soil	MTASPTFVAIFADGEVTRMTTFQPDKDLNLARGARLACAAYESRKKKTPPPLVRAHYERDGEVLESYGREHLDSLRGEAAALSAKD
Ga0306917_113982882	3300031719	Soil	MSTSPAFVAIFTDGEVTRMTTFQKTKALDLGRGVRLARAAYESRTKRKSPPIIEAHYERDGEALENYGREQLGAVS
Ga0306917_114184311	3300031719	Soil	AIFEDGEIARMTAFQETKALDLGRDVRLARAAYESRAKQKSPPIIEAHYERNGEVLENYGREQLGGVS
Ga0318502_102605901	3300031747	Soil	AATIADGEVTRMTTFQKTKALDLARGVRLARAAYESRTKQKSPPIVEAHYERDGEVLESYEREELDVLSKEGAP
Ga0318537_103664132	3300031763	Soil	MSASPTFVAIFADNETTRMTVFQSGKTLNLVRGVRLARAAYESRTKKTPPPIVEARYERDGEILESYEREQLDAVP
Ga0318546_100840634	3300031771	Soil	MTASPTFVAIFADGEVTRMTTFQPDKDLNLARGARLACAAYESRKKKTPPPLVRAHYERDGEVLESYGREQLD
Ga0318543_105654921	3300031777	Soil	KGGGRLREERSPTFVATFADGKVTRMTTFQKTKALDLGRGVRLARAAYESRMKKAPPSIVEAHYERDGEVLESYEREQLDTVP
Ga0318548_102684312	3300031793	Soil	MKPASDRRPRASPTFVATFTDGEVTRMTTFQSGMTLNLGRGVRLARAAHESRTKQMPPPIIEAHYERDGAVLESYKREQLDVP
Ga0318576_105007531	3300031796	Soil	TFVAAFADGEITRMTTFQSGKTLNLGRGVRLARAAHESRTKQMPPPIIEAHYERDGAVLESYERKQLDAVP
Ga0318550_102155822	3300031797	Soil	AARSLATVFVAIFEDGEITRMTAFQETKALDLGRGVRLARAAYESRAKKSPPIIAAHYERNGEVLENYGREQLGAVS
Ga0318568_108555291	3300031819	Soil	MNTSPTFAATFADGEVTRMTTFQKTKALDLARGVRLARAAYESRTKQKSPPIVEAHYERDGEVLESYEREELDVLSK
Ga0318511_104370931	3300031845	Soil	MKPASDRRPRASPTFVATFTDGEVTRMTTFQSGMTLNLGRGVRLARAAYESRTKQMPPPIIEAHYERDGVVLESYERKQLDAVP
Ga0318512_106250541	3300031846	Soil	IFVGGETTRMTVFQSGKTLNLVRGVRLARAAYESRTKKTPPPIVEARYERDGEILESYEREQLDAVP
Ga0306919_110930582	3300031879	Soil	MNTSPAFVAVFADGETTRMTVFQAGKTLNLGRGVRLARAAYESRTKKTPPPIVEARYEHGSDVLESYRREQSEAVP
Ga0306919_114923352	3300031879	Soil	MNNSPTFVAIFEDGEITRMTTFHETKALDLGRGVRLARAAYESRAKQKLPPIIAAHYERNGEVLENYGRGQLGAVS
Ga0306925_102051362	3300031890	Soil	MNNSPTFVAIFEDGEIARMTAFQETKALDLGRDVRLARAAYESRAKQKSPPIIEAHYERNGEVLENYGREQLGGVS
Ga0306925_104287504	3300031890	Soil	VNGSSPVFTAIFVDGETTRMTVFQSREKLDLGRGVRLARAAYESRMRKDAPPIVAAHYERDGEILEHYGREQLDALSKEGAP
Ga0306925_105658894	3300031890	Soil	MDTSPTFVATFADGEVTRMTTFQPAGKTLNLGRGVRLARAAYDSRMKKKSPPIVRAHYERDGETLASY
Ga0306925_105913921	3300031890	Soil	MNTSPTFVANFADGEVARMTAFQSDKTLNLGRGVRLARAAYESRTKKTPPPIVEAHYERNGEVLESYEREQLDTVP
Ga0306923_101237901	3300031910	Soil	HSEGEIMDTSPTFVATFADGEVTRMTTFQPAGKTLNLGRGVRLARAAYDSRMKKKSPPIVRAHYERDGETLASYEREQLDEEGG
Ga0306923_111840112	3300031910	Soil	MNTSSAFVAVFADGETTRMTVFQAGKTLNLGGGVRLARAAYESRTKKTPPPIVEARYEHGSDVLESYRREQLEAVP
Ga0306921_108828561	3300031912	Soil	MNTSSAFVAVFADGETTRMTVFQAGKTLNLSRGVRLARAAYESRTKKTPPPIVEARYERDGEVL
Ga0306921_109285341	3300031912	Soil	GMSASPVFVAIFVGGETTRMTVFQSGKTLNLVRGVRLARAAYESRTKKTPPPIVEARYERDGEILESYEREQLDAVP
Ga0306921_120549341	3300031912	Soil	VGHSPIFVCTFADRETTRMTTFQSSKTLNLVRGTHLARAAYESRMKKAPPPIVEAHYEREDGEVLESYTREQLDAVP
Ga0310912_106991191	3300031941	Soil	LRGRRRMSISPAFVAIFQNGEVTRMTTFQKTKALDLDRGVRLARAAYESRTKQTPPPIVEARYERDGETLESYERKQLDAVP
Ga0310913_100477711	3300031945	Soil	REERSPTFVATFADGKVTRMTTFQKTKALDLGRGVRLARAAYESRMKKAPPSIVEAHYERDGEVLESYEREQLDTVP
Ga0310913_108512843	3300031945	Soil	MDTSPTFVATFADGEVTRMTTFQPAGKTLNLGRGVRLARAAYDSRMKKKSPPIVRAHYERDGETLAS
Ga0310910_114612442	3300031946	Soil	MSTDAARSLATVFVAIFEDGEITRMTAFQETKALDLGRGVRLARAAYESRAKKSPPIIAAHYERNGEVLENYGREQLGAVS
Ga0310909_102787211	3300031947	Soil	MTASPTFVAIFADGEVTRMTTFQPDKDLNLARGARLACAAYESRKKKTPPPLVRAHYEREGEVLESYGREQLDSLRGEAA
Ga0310909_110355821	3300031947	Soil	MSTDAARSLATVFVAIFEDGEITRMTTFHETKALDLGRGVRLARAAYESRAKQKLPPIIAAHYERNGEVLENYGRGQLGTVS
Ga0306926_109156403	3300031954	Soil	MNTSPAFVAVFADGETTRMTVFQAGKTLNLGGGVRLARAAYESRTKKTPPPIVEARYEHGSDVLESYRREQSEAVP
Ga0306926_114884002	3300031954	Soil	MSTSATFVAVFEDGETTRMTAFQKTKALDLGRGVRLARAAYESRTKRKSPPIIEAHYERDGEALENYGREQLGAVS
Ga0306926_124448952	3300031954	Soil	VNGSSPVFTAIFVDGETTRMTVFQSREKLDLGRGVRLARAAYESRMRKDAPPIVAAHYERDGEILEHYGSEQLDALSKEGAP
Ga0306922_102019964	3300032001	Soil	MSASPVFVAIFVGGETTRMTVFQSGKTLNLVRGVRLARAAYESRTKKTPPPIVGAHYERDGEVLESYEREQLDAVP
Ga0306922_114937402	3300032001	Soil	MSTSPAFVAIFTDGEVTRMTTFQKTKALDLGRGVRLARAAYESRAKQKSPPIIEAHYERNGEVLENYGREQLGAVS
Ga0318507_101744402	3300032025	Soil	VATFADGKVTRMTTFQKTKALDLGRGVRLARAAYESRMKKAPPSIVEAHYERDGEVLESYEREQLDTVP
Ga0310911_108225902	3300032035	Soil	MSTSPAFVAIFTDGEVTRMTTFQKTKALDLGRGVRLARAAYESRTKKTPPPIIEARYERDGEILESYEREEL
Ga0318559_104080682	3300032039	Soil	APRCKGGGRLREERSPTFVATFADGKVTRMTTFQKTKALDLGRGVRLARAAYESRMKKAPPSIVEAHYERDGEVLESYEREQLDTVP
Ga0318533_112619191	3300032059	Soil	VNGSSPVFTAIFVDGETTRMTVFQSREKLDLGRGVRLARAAYESRMRKDAPPIVAAHYERDGEILEHYGREQLDALSKEGA
Ga0318505_105072512	3300032060	Soil	MSASPTFVAIFVGGETTRMTVFQSGKTLNLVRGVRLARAAYESRTKKTPPPIVGAHYERDGEVLESYEREQLDAVP
Ga0318504_104081652	3300032063	Soil	SATFVAVFEDGETTRMTAFQKTKALDLGRGVRLARAAYESRTKQKSPPIIEARYERDGEMLKTYRREQLGAA
Ga0318514_103496692	3300032066	Soil	EDGEITRMTAFQETKALDLGRGVRLARAAYESRAKKSPPIIAAHYERNGEVLENYGRGQLGTVS
Ga0306924_102103561	3300032076	Soil	MTASPTFVAIFADGEVTRMTTFQPDKDLNLARGARLACAAYESRKKKTPPPLVRAHYERDGEVLESYGREQLDSLRGEA
Ga0306924_104620322	3300032076	Soil	MDTSPTFVATFADGEVTRMTTFQPAGKTLNLGRGVRLARAAYDSRMKKKSPPIVRAHYERDGETLASYEREQLDEEGG
Ga0306920_1002803606	3300032261	Soil	EVTRMTTFQETKGLDLGRGARLARAAYASRTKKAPPPIVEARYEYGSDVLESYRREQLDAVP
Ga0306920_1003418641	3300032261	Soil	VNGSSPVFTAIFVDGETTRMTVFQSREKLDLGRGVRLARAAYESRMRKDAPPIVAAHYERDGEILEHYGSEQLDALSKEG
Ga0306920_1022838212	3300032261	Soil	MNTSPIFVATFEDSETTRMTTFQLGKTLDLGRGVRLARAAYESRMKKTPPPIVKAHYECDDEILESYEREQLDAVP
Ga0306920_1038134362	3300032261	Soil	MNASPTFVAIFADGETTRMTVFQPGKTLDLGRGVRLARAAYESRTKQKSPPIIKAHYERDGEILESYEREQLDALAEEGAS
Ga0306920_1038310273	3300032261	Soil	MNNSPTFVAIFEDGEIARMTAFQETKALDLGRDVRLARAAYESRAKQKSPPIIEAHYERNGEVLENYGREQLGGV
Ga0318519_103473131	3300033290	Soil	PEARPRRRGGGVMTASPTFVAIFADGEVTRMTTFQPDKDLNLARGARLACAAYESRKKKTPPPLVRAHYERDGEVLESYGREQLDSLRGEAAALSAKD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079450

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences