NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F079140

Metagenome / Metatranscriptome Family F079140

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079140
Family Type Metagenome / Metatranscriptome
Number of Sequences 116
Average Sequence Length 70 residues
Representative Sequence MDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLTRLGRWLARDGAPVRNGRVRAARVR
Number of Associated Samples 97
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 82.76 %
% of genes near scaffold ends (potentially truncated) 26.72 %
% of genes from short scaffolds (< 2000 bps) 76.72 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (68.966 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere
(18.965 % of family members)
Environment Ontology (ENVO) Unclassified
(25.862 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(41.379 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 55.00%    β-sheet: 0.00%    Coil/Unstructured: 45.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 116 Family Scaffolds
PF02805Ada_Zn_binding 18.10
PF08281Sigma70_r4_2 4.31
PF13490zf-HC2 4.31
PF08238Sel1 3.45
PF08240ADH_N 1.72
PF12903DUF3830 1.72
PF13193AMP-binding_C 1.72
PF00501AMP-binding 0.86
PF07715Plug 0.86
PF00593TonB_dep_Rec 0.86
PF04389Peptidase_M28 0.86
PF01022HTH_5 0.86

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 116 Family Scaffolds
COG2169Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domainsReplication, recombination and repair [L] 18.10

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms68.97 %
UnclassifiedrootN/A31.03 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002245|JGIcombinedJ26739_101190669Not Available651Open in IMG/M
3300004139|Ga0058897_10920857Not Available593Open in IMG/M
3300005176|Ga0066679_10390649All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium911Open in IMG/M
3300005341|Ga0070691_10041254All Organisms → cellular organisms → Bacteria2182Open in IMG/M
3300005439|Ga0070711_100693582All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium857Open in IMG/M
3300005440|Ga0070705_100430588All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium985Open in IMG/M
3300005444|Ga0070694_101809426Not Available521Open in IMG/M
3300005445|Ga0070708_100012949All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus6814Open in IMG/M
3300005445|Ga0070708_100366790All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1357Open in IMG/M
3300005468|Ga0070707_101957236Not Available554Open in IMG/M
3300005471|Ga0070698_101075491All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium752Open in IMG/M
3300005518|Ga0070699_100834892All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium843Open in IMG/M
3300005545|Ga0070695_100186651All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1473Open in IMG/M
3300005546|Ga0070696_100258021All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1321Open in IMG/M
3300005546|Ga0070696_101484834All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium580Open in IMG/M
3300005549|Ga0070704_100647509All Organisms → cellular organisms → Bacteria933Open in IMG/M
3300005878|Ga0075297_1006568Not Available1052Open in IMG/M
3300006028|Ga0070717_10623343Not Available979Open in IMG/M
3300006041|Ga0075023_100037884Not Available1455Open in IMG/M
3300006050|Ga0075028_100250373Not Available972Open in IMG/M
3300006058|Ga0075432_10297011All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium669Open in IMG/M
3300006173|Ga0070716_100018989All Organisms → cellular organisms → Bacteria3589Open in IMG/M
3300006755|Ga0079222_10205594All Organisms → cellular organisms → Bacteria → Proteobacteria1189Open in IMG/M
3300006755|Ga0079222_12074334Not Available561Open in IMG/M
3300006852|Ga0075433_10074007All Organisms → cellular organisms → Bacteria2997Open in IMG/M
3300006871|Ga0075434_102198190Not Available555Open in IMG/M
3300007076|Ga0075435_100080718All Organisms → cellular organisms → Bacteria2671Open in IMG/M
3300007255|Ga0099791_10000383All Organisms → cellular organisms → Bacteria16264Open in IMG/M
3300007258|Ga0099793_10491213Not Available609Open in IMG/M
3300007265|Ga0099794_10013201All Organisms → cellular organisms → Bacteria3589Open in IMG/M
3300007265|Ga0099794_10176609All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPHIGHO2_02_FULL_69_131089Open in IMG/M
3300009038|Ga0099829_10132541All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1974Open in IMG/M
3300009143|Ga0099792_10116911All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1426Open in IMG/M
3300010371|Ga0134125_11850069All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium656Open in IMG/M
3300010400|Ga0134122_10200373All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1655Open in IMG/M
3300010400|Ga0134122_11028864All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium810Open in IMG/M
3300011269|Ga0137392_10303131Not Available1321Open in IMG/M
3300011270|Ga0137391_10485971All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPHIGHO2_02_FULL_69_131047Open in IMG/M
3300011271|Ga0137393_10996433All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium714Open in IMG/M
3300012202|Ga0137363_10322968All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPHIGHO2_02_FULL_69_131272Open in IMG/M
3300012205|Ga0137362_10145940All Organisms → cellular organisms → Bacteria2020Open in IMG/M
3300012361|Ga0137360_11426395Not Available596Open in IMG/M
3300012362|Ga0137361_10065764All Organisms → cellular organisms → Bacteria3050Open in IMG/M
3300012362|Ga0137361_11089508All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium720Open in IMG/M
3300012582|Ga0137358_10965471All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium554Open in IMG/M
3300012683|Ga0137398_10617617Not Available750Open in IMG/M
3300012917|Ga0137395_10226130All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1309Open in IMG/M
3300012927|Ga0137416_11280552Not Available662Open in IMG/M
3300012931|Ga0153915_10101640All Organisms → cellular organisms → Bacteria3055Open in IMG/M
3300012931|Ga0153915_10143518All Organisms → cellular organisms → Bacteria2581Open in IMG/M
3300012931|Ga0153915_12168004Not Available650Open in IMG/M
3300012957|Ga0164303_10257214All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPHIGHO2_02_FULL_69_131005Open in IMG/M
3300015371|Ga0132258_11982755All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1465Open in IMG/M
3300017927|Ga0187824_10040897Not Available1415Open in IMG/M
3300017936|Ga0187821_10128378All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium948Open in IMG/M
3300017994|Ga0187822_10153595All Organisms → cellular organisms → Bacteria741Open in IMG/M
3300018051|Ga0184620_10049100All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1181Open in IMG/M
3300019865|Ga0193748_1026484Not Available544Open in IMG/M
3300019881|Ga0193707_1072020Not Available1071Open in IMG/M
3300020010|Ga0193749_1042197All Organisms → cellular organisms → Bacteria881Open in IMG/M
3300020199|Ga0179592_10346821Not Available654Open in IMG/M
3300020579|Ga0210407_10002550All Organisms → cellular organisms → Bacteria15571Open in IMG/M
3300020579|Ga0210407_11426060All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium513Open in IMG/M
3300021086|Ga0179596_10122336All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1210Open in IMG/M
3300021168|Ga0210406_11118406All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium579Open in IMG/M
3300021432|Ga0210384_10580480All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1008Open in IMG/M
3300021478|Ga0210402_10183085All Organisms → cellular organisms → Bacteria1920Open in IMG/M
3300021479|Ga0210410_10301981Not Available1436Open in IMG/M
3300022533|Ga0242662_10178472All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium658Open in IMG/M
3300025885|Ga0207653_10134400All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium900Open in IMG/M
3300025910|Ga0207684_10567687All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium970Open in IMG/M
3300025910|Ga0207684_10929140Not Available730Open in IMG/M
3300025910|Ga0207684_11243402Not Available615Open in IMG/M
3300025915|Ga0207693_10107672All Organisms → cellular organisms → Bacteria2187Open in IMG/M
3300025922|Ga0207646_10037767All Organisms → cellular organisms → Bacteria → Proteobacteria4353Open in IMG/M
3300025939|Ga0207665_10000261All Organisms → cellular organisms → Bacteria → Proteobacteria36619Open in IMG/M
3300026001|Ga0208000_103931All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium844Open in IMG/M
3300026285|Ga0209438_1172531Not Available569Open in IMG/M
3300026340|Ga0257162_1002159All Organisms → cellular organisms → Bacteria2160Open in IMG/M
3300026351|Ga0257170_1028251All Organisms → cellular organisms → Bacteria752Open in IMG/M
3300026358|Ga0257166_1002437All Organisms → cellular organisms → Bacteria1885Open in IMG/M
3300026359|Ga0257163_1024025Not Available951Open in IMG/M
3300026361|Ga0257176_1029984Not Available817Open in IMG/M
3300026494|Ga0257159_1087506All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium542Open in IMG/M
3300026514|Ga0257168_1005524All Organisms → cellular organisms → Bacteria2159Open in IMG/M
3300026515|Ga0257158_1000794All Organisms → cellular organisms → Bacteria3613Open in IMG/M
3300026551|Ga0209648_10010167All Organisms → cellular organisms → Bacteria8163Open in IMG/M
3300026551|Ga0209648_10357227Not Available999Open in IMG/M
3300026551|Ga0209648_10830861All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium505Open in IMG/M
3300027651|Ga0209217_1074101All Organisms → cellular organisms → Bacteria996Open in IMG/M
3300027775|Ga0209177_10248734Not Available656Open in IMG/M
3300027894|Ga0209068_10007863All Organisms → cellular organisms → Bacteria → Proteobacteria5028Open in IMG/M
3300027903|Ga0209488_10017387All Organisms → cellular organisms → Bacteria5220Open in IMG/M
3300028792|Ga0307504_10102182Not Available915Open in IMG/M
3300028792|Ga0307504_10201532All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium705Open in IMG/M
3300028828|Ga0307312_10666484All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium689Open in IMG/M
3300028885|Ga0307304_10547646All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium533Open in IMG/M
3300029636|Ga0222749_10054695Not Available1772Open in IMG/M
(restricted) 3300031197|Ga0255310_10143324All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium654Open in IMG/M
(restricted) 3300031248|Ga0255312_1028898All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1325Open in IMG/M
3300031716|Ga0310813_10077511All Organisms → cellular organisms → Bacteria2527Open in IMG/M
3300031820|Ga0307473_10269585Not Available1054Open in IMG/M
3300031820|Ga0307473_10573300Not Available774Open in IMG/M
3300031908|Ga0310900_11128529All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300032075|Ga0310890_10443722All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium974Open in IMG/M
3300032174|Ga0307470_10718195Not Available764Open in IMG/M
3300033412|Ga0310810_10005465All Organisms → cellular organisms → Bacteria14215Open in IMG/M
3300033432|Ga0326729_1001483All Organisms → cellular organisms → Bacteria5019Open in IMG/M
3300033433|Ga0326726_10002462All Organisms → cellular organisms → Bacteria17033Open in IMG/M
3300033433|Ga0326726_10513971All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1146Open in IMG/M
3300033500|Ga0326730_1048344Not Available823Open in IMG/M
3300033502|Ga0326731_1091392All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium701Open in IMG/M
3300033513|Ga0316628_100005964All Organisms → cellular organisms → Bacteria9872Open in IMG/M
3300033513|Ga0316628_100165804All Organisms → cellular organisms → Bacteria → Proteobacteria2608Open in IMG/M
3300033513|Ga0316628_104064281Not Available522Open in IMG/M
3300033513|Ga0316628_104364833Not Available502Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere18.97%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil18.10%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil13.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil8.62%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil4.31%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.45%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.45%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.45%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands2.59%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.59%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.59%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.59%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.59%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.59%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.72%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil1.72%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil1.72%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.86%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.86%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004139Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005878Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300017927Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300018051Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1EnvironmentalOpen in IMG/M
3300019865Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s1EnvironmentalOpen in IMG/M
3300019881Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2EnvironmentalOpen in IMG/M
3300020010Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026001Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104 (SPAdes)EnvironmentalOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026340Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-AEnvironmentalOpen in IMG/M
3300026351Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-BEnvironmentalOpen in IMG/M
3300026358Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-BEnvironmentalOpen in IMG/M
3300026359Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-AEnvironmentalOpen in IMG/M
3300026361Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-BEnvironmentalOpen in IMG/M
3300026494Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-AEnvironmentalOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300026515Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-AEnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300027651Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031248 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300033432Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF6AY SIP fractionEnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300033500Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF7AN SIP fractionEnvironmentalOpen in IMG/M
3300033502Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF9FY SIP fractionEnvironmentalOpen in IMG/M
3300033513Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_CEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ26739_10119066923300002245Forest SoilREQSARRAVLDWARRPRRGLILHLGIALTRLGRWLDRDRGPVRNAGVRVARVR*
Ga0058897_1092085713300004139Forest SoilGELREQSARRAVLDWARRPRRGLILHLGIVLTRLGRWLDRDRGPVRNAGARVARVR*
Ga0066679_1039064923300005176SoilMDYGEDITQKMAEARLGELREQSARRAVLDWARRPRRGLILHLGIVLTRLDRWLDRDRGPVRNAGVRVARVR*
Ga0070691_1004125423300005341Corn, Switchgrass And Miscanthus RhizosphereMDTSDYITEKMAAIRLDELREQSARLALLDRARGGPRGLAPRLGAALVRLGRWLARAGVPGRNGGVRVARVR*
Ga0070711_10069358223300005439Corn, Switchgrass And Miscanthus RhizosphereMDYGEYITEKMAAARLGELREQSARRAMLDCAPRPRRGLILHLGIVLTRLGRWLDRDRGRVRNAGVRVARVR*
Ga0070705_10043058823300005440Corn, Switchgrass And Miscanthus RhizosphereMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLIRLSRWLARGGDPVGNGRVRAARVR*
Ga0070694_10180942613300005444Corn, Switchgrass And Miscanthus RhizosphereMDYGEYITEKMAAARLGELREQSARRAMLVWARRPRRGLILHLGIALTRLGRWLDRDRGRVRNAGVRVARVR*
Ga0070708_10001294953300005445Corn, Switchgrass And Miscanthus RhizosphereMDFGDYVTEKVAAARLGELRAHCARAALLSQARGDRRGLISRLGIALTRLGRWLARDRDPVRNGRVRTARVR*
Ga0070708_10036679023300005445Corn, Switchgrass And Miscanthus RhizosphereMDYGEYITEKMAAARLGELREQSARRAMLDWARRPRRGLILHLGIVLTRLGRWLDRDRGPVRNAGVRVARVR*
Ga0070707_10195723623300005468Corn, Switchgrass And Miscanthus RhizosphereTVMDYGEYITEKMAAARLGELREQSARRVMLDCAPRPRRGLILHLGIVLTRLGRWLDRDRGPVRNAGVRVARVR*
Ga0070698_10107549123300005471Corn, Switchgrass And Miscanthus RhizosphereMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLSRLGRWLARDGDPVRNGRVRAARVR*
Ga0070699_10083489233300005518Corn, Switchgrass And Miscanthus RhizosphereMVMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLTRLGRWLARDG
Ga0070695_10018665123300005545Corn, Switchgrass And Miscanthus RhizosphereMDFGDYITEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLIRLSRWLARGGDPVGNGRVRAARVR*
Ga0070696_10025802123300005546Corn, Switchgrass And Miscanthus RhizosphereMDFGDYITEKVAAARLGELREQCARLTLLAEARRGRRGLISRLRIGLARLGRWLGRPGGPVGNGRVRAARVR*
Ga0070696_10148483423300005546Corn, Switchgrass And Miscanthus RhizosphereMDYGEYITEKMAAARLGELREQSARRVMLDCAPRPRRGLILHLGIALTRLGRWLDRDRGRVRNAGVRV
Ga0070704_10064750923300005549Corn, Switchgrass And Miscanthus RhizosphereMDTSDYITEKMAVIRLDELREQSARLALLDRARGGPRGLAPRLGAALVPLGRWLARAGVPGRNGGVRVARVR*
Ga0075297_100656813300005878Rice Paddy SoilSDYITEKMAAARLEELREQSARLALLDRARGGRRGLAPRLGGALVRLGRWLARDGVHGRNGGVRVARVR*
Ga0070717_1062334323300006028Corn, Switchgrass And Miscanthus RhizosphereARLGELREQSARRAMLDCAPRPRRGLILHLGIALTRLGRWLDRDRGRVRNAGVRVARVR*
Ga0075023_10003788423300006041WatershedsVDFGDYVTEKVAAARLGELREQCARLTLLDQVRRGRRGLVLRLGIGLARLGRWLARDRDPLRNGRVRASRVR*
Ga0075028_10025037313300006050WatershedsDFGDYVTEKVAAARLGELREQCARLALLDQLERGRHGLIPRLGIGLTRLGRWLARDGGPVRNGRVRAARVR*
Ga0075432_1029701113300006058Populus RhizosphereMDYGEYITEKMAAARLGELREQSARRAVLDRARRPRRGLILHLGIVLTRLGRWLDRDRGPVRNAGVRVARVR*
Ga0070716_10001898923300006173Corn, Switchgrass And Miscanthus RhizosphereMDYGEYITEKMAAARLGELREQSARRAMLDCAPRPGRGLILHLGIALTRLGRWLDRDRGRVRNAGVRVARVR*
Ga0079222_1020559433300006755Agricultural SoilMDYGEYITEKMAEARLGELREQSARRAVLDWARRPRRGLILHLGIVLTRLGRWLDRGRGPVRNAGVRVARVR*
Ga0079222_1207433423300006755Agricultural SoilMDVSDYITEKMAAARLDELREQSARLALLDQARGGRSTLARDLGIVLIRLGRWLAREGAPGGNGGVRVARVR*
Ga0075433_1007400743300006852Populus RhizosphereMDYGEYITEKMAAARLRELREQSARRAVLDWARRPRRGLILHLGIVLTRLGRWLDRHRGPVRNAGVRVARVR*
Ga0075434_10219819023300006871Populus RhizosphereMDYGEYITEKMAEARLGELREQSARRAVLDRARRPRRGLILHLGIVLTRLGRWLDRDRGPVRNAGVRVARVR*
Ga0075435_10008071853300007076Populus RhizosphereMDYGEYITEKMAAARLRELREQSARRAVLDWARRPRRGLILHLGIVLTRLGRWLDRHRG
Ga0099791_10000383173300007255Vadose Zone SoilMIMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLIRLGRWLARGGDPVGNGRVRAARVR*
Ga0099793_1049121323300007258Vadose Zone SoilMIMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLTRLGRRLVRDGDPVRNGRVRTARVR*
Ga0099794_1001320123300007265Vadose Zone SoilMIMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLIRLGRWLARGRDPVGNGRVRAARVR*
Ga0099794_1017660933300007265Vadose Zone SoilMDFGDYVTEKVAAARLGELRAHCARATLLSQARGDRRGLISRLGIALTRLGRWPARDRDRGRNGRVRTARVR*
Ga0099829_1013254133300009038Vadose Zone SoilMIMDFGDYVTEKVAAARLGELREQCARLTLLHQARRGRRGLIPCLGIGLSRLGRWLARDGDPVRNGRVRAARVR*
Ga0099792_1011691123300009143Vadose Zone SoilMDFGDYVTEKVAAARLGELRAHCARATLLSQARGDRRGLISRLGIALTRLGRWPARDRDPVRNGRVRTARVR*
Ga0134125_1185006923300010371Terrestrial SoilMAMDFGDYVTEKVAAARLGELREQCARLALLDQLGRGRRGLIPRLRIGLARLGRWLARDGGPGRNGRVRVARV
Ga0134122_1020037313300010400Terrestrial SoilMAMDFGDYITEKVAAARLGELREQCARLTLLAEARRGRRGLISRLRIGLARLGRWLGRPGGPVGNGRVRAARVR*
Ga0134122_1102886423300010400Terrestrial SoilMAMDFGDYITEKVAAARLGELREQCTRLALLHQARRGRRGLVRRLGIGLARLGRWLARDGDPLRNGRVRAARVR*
Ga0137392_1030313123300011269Vadose Zone SoilMDFGDYVTEKVAAARLGELREHCARATLLSQARGDRRGLISRLGIALTRLGRWPARDRDPVRNGRVRTARVR*
Ga0137391_1048597133300011270Vadose Zone SoilMDFGDYVTEKVAAARLGELRAHCARATLLSQARGDRRGLIPRLGIAPPRLGRWPARDRDRVRNGRVRTARVR*
Ga0137393_1099643323300011271Vadose Zone SoilMIMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPCLGIGLSRLGRWLARDGDPVRNGRVRAARVR*
Ga0137363_1032296823300012202Vadose Zone SoilMTMDFGDYVTEKVAAARLGELRAHCARAALLSQARGDRRGLISRLGIALTRLGRWLARDRDPVRNGRVRTARVR*
Ga0137362_1014594043300012205Vadose Zone SoilMIMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLTRLGRRLVRDGDPVRNGRVRAARVR*
Ga0137360_1142639523300012361Vadose Zone SoilMDFGDYVTEKVAAARLGELRAHCARAALLSQARGDRRGLISRLGIALTRLGRWPARHRDPVRNGRVRTARVR*
Ga0137361_1006576443300012362Vadose Zone SoilMTMDFGDYVTEKVAAARLGELREHCARATLLSQARGDRRGLISRLGIALTRLGRWLARDRDPVRNGRVRTARVR*
Ga0137361_1108950813300012362Vadose Zone SoilMIMDFGDYVTEKVAAARLGELREQCARLTLLHQARRGRRGLIPCLGIGLSRLGRWLARDG
Ga0137358_1096547113300012582Vadose Zone SoilMDYGEYITQKMAEARLGELREQSARRAVLDWARRPRRGLILHLGIVLTRLGRWLDRDRGPVRNAGVRVARVG
Ga0137398_1061761723300012683Vadose Zone SoilMDFGDYVTEKVAAARLGELRAHCARAALLSQARGDRRGLISRLGIALTRLGRWPARDRDPVRNGRVRAARVR*
Ga0137395_1022613023300012917Vadose Zone SoilMDFGDYVTEKVAAARLGELRAHCARAALLSQARGDRRGLISRLGIALTRLGRWPARDRDPVRNGRVRTARVR*
Ga0137416_1128055223300012927Vadose Zone SoilMDFGDYVTEKVAAARLGELRAHCARATLLSQARGDRRGLISRLGIALTRLGRWPARDRDRVRNGRVRTARVR*
Ga0153915_1010164043300012931Freshwater WetlandsMDVSDYITEKMAAARLDDLREQSARLALLDQARGGRRGLAPRLGAVLVRLGRWLARDAVPGRNGGVRVARVR*
Ga0153915_1014351823300012931Freshwater WetlandsMDFSDYITEKMAAARLGELREQSARLALLDQARAGRRGLGFRLGVALTRLGQRLARGGVAGRNAGVRVARVR*
Ga0153915_1216800423300012931Freshwater WetlandsMDVSDYITEKMAAARLDELREQSARLALLDQARGGRRGLVFRLGTALTRLGQWLARDRVAGRNAGVRVARVR*
Ga0164303_1025721413300012957SoilMIMDFGDYVTEQVAAARLGELREPCTRLTLLDQARRGRRGLIPRLGIGLTRLGRRLVRDGDP
Ga0132258_1198275523300015371Arabidopsis RhizosphereMDVSDYVTEKIAAARLEELRERRARLALLDQIRGGRRPLARSLGAALVRVGRWLAPDEVADRNGGMRVAR*
Ga0187824_1004089733300017927Freshwater SedimentRLDELREQSARLVLLDQARGGRSTLAHDLGIVLIRLGRWLAREAAPGRNGGVRVARVR
Ga0187821_1012837813300017936Freshwater SedimentMDVSDYITEKMAAARLDELREQSARLALLDQARGGRSTLARDLGIVLIRLGRWLAREGAPGRNGGVRVARVR
Ga0187822_1015359523300017994Freshwater SedimentMDVSDYITEKMAAARLDELREQSARLVLLDQARGGRRALAHDLGIALIRLGRWLAREGAPGRNGGVRVARVR
Ga0184620_1004910023300018051Groundwater SedimentMDFGDYVTEKVAAARLGELREQCARLALLDQLGRGRRGLIPRLGIGLTRLGRWLARDGAPVRNGRVRAARVR
Ga0193748_102648413300019865SoilMDFGDYVTEKVAAARLGELREQCARLALRDQLGRGRRGLIPRLGIGLTRLGRWLARDGAPVRNGRVRAARVR
Ga0193707_107202023300019881SoilMDFGDYVTEKVAAARLGELREQCARLALLDQLERGRRGLIPRLGIGLTRLGRWLARDGGPVRNGRVRAARVR
Ga0193749_104219723300020010SoilMDFGDYVTEKVAAARLGELREQCARLALLDQLERGRRGLIPRLGIGLTRLGRWLARDGARSGMDGCAPPG
Ga0179592_1034682123300020199Vadose Zone SoilMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLIRLGRWLARGGDPVGNGRVRAARVR
Ga0210407_10002550163300020579SoilMDYGEYITQKMAEARLGELREQSARRAVLDWARRPRRGLILHLGIVLTRLGRWLDRDRGPVRNAGARVARVR
Ga0210407_1142606013300020579SoilMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLTRLGRRLVRDGDPVRNGRVRAARVR
Ga0179596_1012233623300021086Vadose Zone SoilMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPCLGIGLSRLGRWLARDGDPVRNGRVRAARVR
Ga0210406_1111840623300021168SoilMDYGEYITQKMAEARLGELREQSARRAVLDWARRPRRGLILHLGIVLTRLGRWLDRDRGPVRNAGARVAR
Ga0210384_1058048013300021432SoilMIMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLTRLGRRLVRDGDPVRNGRVRAARVR
Ga0210402_1018308513300021478SoilMDYGEYITQKMAEARLGELREQSARRAVLDWARRPRRGLILHLGIVLTRLGRWLDRGRGPVRNAGVRVARV
Ga0210410_1030198133300021479SoilLREQSARRAVLDRARRPRRGLILHLGIVLTRLGRWLDRDRGPVRNAGARVARVR
Ga0242662_1017847223300022533SoilQKMAEARLGELREQSARRAVLDWARRPRRGLILHLGIVLTRLGRWLDRDRGPVRNAGVRVARVR
Ga0207653_1013440033300025885Corn, Switchgrass And Miscanthus RhizosphereMDFGDYVTEKVAAARLGELREQCARLTLLDQVRRGRRGLIPRLGIGLTRLGRWLARDGDPVRNGRVRAARVR
Ga0207684_1056768713300025910Corn, Switchgrass And Miscanthus RhizosphereMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLIRLSRWLARGGDPVGNGRVRAARVR
Ga0207684_1092914023300025910Corn, Switchgrass And Miscanthus RhizosphereMVMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLTRLGRWLARDGDPVRNGRVRAARVR
Ga0207684_1124340213300025910Corn, Switchgrass And Miscanthus RhizosphereMDYGEYITEKMAAARLGELREQSARRAMLDWARRPRRGLILHLGIVLTRLGRWLDRDRGPVRNAGVRVARVR
Ga0207693_1010767233300025915Corn, Switchgrass And Miscanthus RhizosphereMDYGEYITEKMAAARLGELREQSARRAVLDWARRPRRGLILHLGIVLTRLGRWLDRDRGPVRNAGVRVARVR
Ga0207646_1003776763300025922Corn, Switchgrass And Miscanthus RhizosphereMDFGDYVTEKVAAARLGELRAHCARAALLSQARGDRRGLISRLGIALTRLGRWLARDRDPVRNGRVRTARVR
Ga0207665_10000261373300025939Corn, Switchgrass And Miscanthus RhizosphereMDYGEYITEKMAAARLGELREQSARRAMLVWARRPRRGLILHLGIALTRLGRWLDRDRGRVRNAGVRVARVR
Ga0208000_10393113300026001Rice Paddy SoilMDTSDYITEKMAAIRLDELREQSARLALLDRARGGPRGLAPRLGAALVRLGRWLARAGV
Ga0209438_117253123300026285Grasslands SoilMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLIRLGRWFARGGDPVGNGRVRAARVR
Ga0257162_100215943300026340SoilMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLIRLGRWLARGGDPVGNGRVRAA
Ga0257170_102825123300026351SoilKVAAARLGELREQCARLTLLHQARRGRRGLIPCLGIGLSRLGRWLARDGDPVRNGRVRAARVR
Ga0257166_100243733300026358SoilMDFGDYVTEKVAAARLGELREQCARLTLLHQARRGRRGLIPCLGIGLSRLGRWLARDGDPVRNGRVRAARVR
Ga0257163_102402523300026359SoilMDFGDYVTEKVAAARLGELRDQCARLALLDQLGRGRRGLIPRLGIGLTRLGRWLARDGGSVRNGRVRAARVR
Ga0257176_102998423300026361SoilMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLIRLGRWLARGRDPVGNGRVRAARVR
Ga0257159_108750613300026494SoilMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPCLGIGLSRLGRWLARDGDPVRNGRVRAARV
Ga0257168_100552443300026514SoilMDFGDYVTEKVAAARLGELWEQCARLTLLDQARRGRRGMIPRLGIGLTRLGRWLVRDGDPVRNGRVRAARVR
Ga0257158_100079443300026515SoilMDFGDYVTEKMAAARLGELREQGARLALLDQLGRGRRGLIPRLGIGLTRLGRWLARDGGPARNGRVRAARVR
Ga0209648_10010167103300026551Grasslands SoilMDFGDYVTEKVAAARLGELREHCARATLLSQARGDRRGLISRLGIALTRLGRWPARDRDPVRNGRVRTARVR
Ga0209648_1035722713300026551Grasslands SoilMDFGDYVTGKVAAARLDELREQCARLTLLDQARRGRRGLIPRLGIGLTRLGRWLVRDGDPVRNGRVRAARVR
Ga0209648_1083086123300026551Grasslands SoilMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLTRLGRWLVRDG
Ga0209217_107410123300027651Forest SoilMDYGEYITEKMAEARLGELREQSARRAVLDWARRPRRGLILHLGIALTRLGRWLDRDRGPVRNAGVRVARVR
Ga0209177_1024873423300027775Agricultural SoilMDYGEYITEKMAAARLRELREQSARRAVLDWARRPRRGLILHLGIVLTRLGRWLDRHRGPVRNAGVRVARVR
Ga0209068_1000786333300027894WatershedsVDFGDYVTEKVAAARLGELREQCARLTLLDQVRRGRRGLVLRLGIGLARLGRWLARDRDPLRNGRVRASRVR
Ga0209488_1001738723300027903Vadose Zone SoilMDFGDYVTEKVAAARLGELRAHCARATLLSQARGDRRGLISRLGIALTRLGRWPARDRDRVRNGRVRTARVR
Ga0307504_1010218223300028792SoilMNGSDYITEKMAAARLDELREQSARLALLDQARGGRRALTHGLGTALVRLGRWLARDGASGRNGGVRVARVR
Ga0307504_1020153223300028792SoilMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLTRLGRWLARDGAPVRNGRVRAARVR
Ga0307312_1066648423300028828SoilMDFGDYVTEKVAAARLGELREQCARLALLDQLERGRRGLIPRLGIGLTRLGRWLARDGAPVRN
Ga0307304_1054764613300028885SoilMDFGDYVTEKVAAARLGELREQCARLALLDQLGRGRRGLIPRLGIGLTRLGRWLARDGAPVRNGRVRAA
Ga0222749_1005469523300029636SoilMDYGEYITQKMAEARLGELREQSARRAVLDWARRPRRGLILHLGIGLTRLGRWLDRDRGPVRNAGARVARVR
(restricted) Ga0255310_1014332413300031197Sandy SoilKMAAARLDELREQSARLALLDQARGGRSTLAHDLGIVLIRLGRWLAREGAPGRNGGVRVARVR
(restricted) Ga0255312_102889823300031248Sandy SoilMDTSDYITEKMAAIRLDELREQSARLALLDRARGGPRGLAPRLGAALVPLGRWLARAGVPGRNGGVRVARVR
Ga0310813_1007751113300031716SoilMDVSDYVTEKVAAARLEELRERSARLALLDQVRGGRGPLARSLGAALVRVGRWLAPDEVPDRNGGVRVARVR
Ga0307473_1026958523300031820Hardwood Forest SoilMDYGEYITEKMAAARLGELREQSARRAMLDGARRPRRGLILHLGIVLTRLGRWLDRDRGPVRNAGVRVARVR
Ga0307473_1057330023300031820Hardwood Forest SoilMVMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLIRLSRWLARGGDPVGNGRVRAARVR
Ga0310900_1112852923300031908SoilVMDTSDYITEKMAAIRLDELREQSARLALLDRARGGPRGLAPRLGAALVRLGRWLARAGVPGRNGGVRVARVR
Ga0310890_1044372223300032075SoilMDTSDYITEKMAAIRLDELREQSARLALLDRARGGPRGLAPRLGAALVRLGRWLARAGVPGRNGGVRVARVR
Ga0307470_1071819523300032174Hardwood Forest SoilMDFGDYVTEKVAAARLGELREQCARLTLLDQARRGRRGLIPRLGIGLTRLGRWLARDRGPGRNGRVRVARVR
Ga0310810_10005465133300033412SoilMDVSDYVTEKMAAARLEELRERSARLALLDQVRGGRGPLARSLGAALVRVGRWLAPDEVPDRNGGVRVARVR
Ga0326729_100148333300033432Peat SoilMDVSDYITEKMAAARLEELREQSARLALLDQARGGRGGLAHGLGTALVRLGRWLARDGVPGRNGGARVARVR
Ga0326726_1000246283300033433Peat SoilMDFSDYITEKMAAARLGELREQSARLALLDQARAGRRGLAFRLSTALTRLGQRLARGGVAGRNAGVRVARVR
Ga0326726_1051397123300033433Peat SoilMDVSDYITEKMAAARLEELREQSARLALLDQARGGRGALARGLGTALVRLGRWLARDGVSGRNGGVRVARVR
Ga0326730_104834413300033500Peat SoilVMDVSDYITEKMAAARLEELREQSARLALLDQARGGRGGLAHGLGTALVRLGRWLARDGVPGRNGGARVARVR
Ga0326731_109139223300033502Peat SoilMDVSDYITEKMAAARLEELREQSARLALLDQARGGRGALARGLGTALVRLGRWLARDGVSGRNGGVR
Ga0316628_10000596463300033513SoilMDFSDYITEKMAAARLGELREQSARLALLDQARAGRRGLGFRLGVALTRLGQRLARGGVAGRNAGVRVARVR
Ga0316628_10016580443300033513SoilMDVSDYITEKMAAARLDELRERSARLALLAQARGGRRGLTRRLGTVLVRLGRWLARDGVPGRNGGVRVARVR
Ga0316628_10406428123300033513SoilSDYITEKMAAIRLDELREQSARLALLDRARGGPRGLAPRLGAALVRLGRWLARAGVPGRNGGVRVARVR
Ga0316628_10436483323300033513SoilMDVSDYITEKMAAARLDELREQSARLALLDQARGGRRGLVFRLGTALTRLGQWLARDRVASRNAGVRVARVR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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