NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F079134

Metagenome / Metatranscriptome Family F079134

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079134
Family Type Metagenome / Metatranscriptome
Number of Sequences 116
Average Sequence Length 64 residues
Representative Sequence MLSFDDDIVPAPQPRAARSTPETIRAQAAGNIASGILSREPVHDLDVEKQAMENGFRRVRMEDKRVI
Number of Associated Samples 107
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 99.14 %
% of genes near scaffold ends (potentially truncated) 99.14 %
% of genes from short scaffolds (< 2000 bps) 95.69 %
Associated GOLD sequencing projects 103
AlphaFold2 3D model prediction Yes
3D model pTM-score0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.414 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere
(6.035 % of family members)
Environment Ontology (ENVO) Unclassified
(33.621 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(39.655 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 23.16%    β-sheet: 0.00%    Coil/Unstructured: 76.84%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.25
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 116 Family Scaffolds
PF10387DUF2442 88.79
PF02867Ribonuc_red_lgC 4.31
PF03477ATP-cone 1.72
PF01476LysM 0.86

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 116 Family Scaffolds
COG0209Ribonucleotide reductase alpha subunitNucleotide transport and metabolism [F] 4.31

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.41 %
UnclassifiedrootN/A2.59 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000559|F14TC_100885862All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium532Open in IMG/M
3300000559|F14TC_101530367All Organisms → cellular organisms → Bacteria → Proteobacteria1675Open in IMG/M
3300002077|JGI24744J21845_10057457All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium713Open in IMG/M
3300003861|Ga0031654_10116066All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium752Open in IMG/M
3300004000|Ga0055458_10055319All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1000Open in IMG/M
3300004024|Ga0055436_10253416All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium562Open in IMG/M
3300004025|Ga0055433_10105783All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium644Open in IMG/M
3300004242|Ga0066601_10160198All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium841Open in IMG/M
3300004808|Ga0062381_10413152All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium520Open in IMG/M
3300005093|Ga0062594_100547550All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium996Open in IMG/M
3300005093|Ga0062594_100842799All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium855Open in IMG/M
3300005186|Ga0066676_10952894All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium573Open in IMG/M
3300005187|Ga0066675_11099166All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium594Open in IMG/M
3300005204|Ga0068997_10066673All Organisms → cellular organisms → Bacteria → Proteobacteria724Open in IMG/M
3300005328|Ga0070676_10639816All Organisms → cellular organisms → Bacteria → Proteobacteria771Open in IMG/M
3300005330|Ga0070690_100601619All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium835Open in IMG/M
3300005331|Ga0070670_100413548All Organisms → cellular organisms → Bacteria1192Open in IMG/M
3300005331|Ga0070670_101575890All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium604Open in IMG/M
3300005335|Ga0070666_10679637All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium754Open in IMG/M
3300005335|Ga0070666_10757894All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium714Open in IMG/M
3300005438|Ga0070701_10981147All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium588Open in IMG/M
3300005440|Ga0070705_101254691All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium613Open in IMG/M
3300005455|Ga0070663_100821268All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium798Open in IMG/M
3300005457|Ga0070662_100562726All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium956Open in IMG/M
3300005536|Ga0070697_101911862All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium531Open in IMG/M
3300005615|Ga0070702_100088882All Organisms → cellular organisms → Bacteria → Proteobacteria1869Open in IMG/M
3300005618|Ga0068864_100126853All Organisms → cellular organisms → Bacteria → Proteobacteria2287Open in IMG/M
3300005618|Ga0068864_100948479All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium851Open in IMG/M
3300005840|Ga0068870_10028288All Organisms → cellular organisms → Bacteria → Proteobacteria2814Open in IMG/M
3300005993|Ga0080027_10125352All Organisms → cellular organisms → Bacteria975Open in IMG/M
3300006173|Ga0070716_100093138All Organisms → cellular organisms → Bacteria1828Open in IMG/M
3300006175|Ga0070712_100340035All Organisms → cellular organisms → Bacteria → Proteobacteria1225Open in IMG/M
3300006224|Ga0079037_101939962All Organisms → cellular organisms → Bacteria → Proteobacteria588Open in IMG/M
3300006237|Ga0097621_102065777All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium545Open in IMG/M
3300006354|Ga0075021_10179452All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1288Open in IMG/M
3300006575|Ga0074053_11216451All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium578Open in IMG/M
3300006797|Ga0066659_11637155All Organisms → cellular organisms → Bacteria → Proteobacteria541Open in IMG/M
3300006845|Ga0075421_101063191All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium912Open in IMG/M
3300006852|Ga0075433_11696129All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium544Open in IMG/M
3300006881|Ga0068865_100561956All Organisms → cellular organisms → Bacteria959Open in IMG/M
3300006904|Ga0075424_101800624All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium648Open in IMG/M
3300009087|Ga0105107_10612198All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium758Open in IMG/M
3300009094|Ga0111539_11907349All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium689Open in IMG/M
3300009111|Ga0115026_10596598All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium837Open in IMG/M
3300009131|Ga0115027_10290067All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1095Open in IMG/M
3300009162|Ga0075423_10745841All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1035Open in IMG/M
3300010371|Ga0134125_11623791All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium703Open in IMG/M
3300010400|Ga0134122_12041012All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium613Open in IMG/M
3300010401|Ga0134121_11913450All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium623Open in IMG/M
3300010403|Ga0134123_11781880All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium669Open in IMG/M
3300011437|Ga0137429_1251118All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium548Open in IMG/M
3300012350|Ga0137372_10478522All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium929Open in IMG/M
3300012360|Ga0137375_11275803Not Available556Open in IMG/M
3300012515|Ga0157338_1092402All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium507Open in IMG/M
3300012929|Ga0137404_11437908All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium637Open in IMG/M
3300012955|Ga0164298_10219621All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1125Open in IMG/M
3300012957|Ga0164303_10971115All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium602Open in IMG/M
3300013306|Ga0163162_12799389All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium561Open in IMG/M
3300014322|Ga0075355_1105144All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium706Open in IMG/M
3300014885|Ga0180063_1061356All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1097Open in IMG/M
3300014969|Ga0157376_10800277All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium955Open in IMG/M
3300015372|Ga0132256_103069766All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium561Open in IMG/M
3300015374|Ga0132255_100999125All Organisms → cellular organisms → Bacteria → Proteobacteria1255Open in IMG/M
3300015374|Ga0132255_101144601All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1171Open in IMG/M
3300017930|Ga0187825_10310576All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium589Open in IMG/M
3300017974|Ga0187777_10233733All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1244Open in IMG/M
3300018029|Ga0187787_10372703All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium556Open in IMG/M
3300018433|Ga0066667_11045634All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium705Open in IMG/M
3300018476|Ga0190274_10710374All Organisms → cellular organisms → Bacteria → Proteobacteria1051Open in IMG/M
3300025443|Ga0208081_1047778All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium709Open in IMG/M
3300025479|Ga0208588_1069692All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium676Open in IMG/M
3300025916|Ga0207663_11601866All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium524Open in IMG/M
3300025919|Ga0207657_11038512All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium628Open in IMG/M
3300025949|Ga0207667_10259292All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1778Open in IMG/M
3300025961|Ga0207712_11395597All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium627Open in IMG/M
3300025972|Ga0207668_11294062All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium656Open in IMG/M
3300025986|Ga0207658_10516245All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1066Open in IMG/M
3300025986|Ga0207658_10955438All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium781Open in IMG/M
3300026041|Ga0207639_10229496All Organisms → cellular organisms → Bacteria → Proteobacteria1608Open in IMG/M
3300026067|Ga0207678_10726326All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium875Open in IMG/M
3300026142|Ga0207698_10591025All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1093Open in IMG/M
3300027739|Ga0209575_10160973All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium805Open in IMG/M
3300027877|Ga0209293_10790661All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium503Open in IMG/M
3300027885|Ga0209450_10328919All Organisms → cellular organisms → Bacteria → Proteobacteria1108Open in IMG/M
3300027900|Ga0209253_10684406All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium742Open in IMG/M
3300027902|Ga0209048_10022145All Organisms → cellular organisms → Bacteria → Proteobacteria5496Open in IMG/M
3300027902|Ga0209048_10686625All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium675Open in IMG/M
3300027979|Ga0209705_10032495Not Available2889Open in IMG/M
3300028381|Ga0268264_10937013All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium871Open in IMG/M
3300028869|Ga0302263_10206945All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium781Open in IMG/M
3300029989|Ga0311365_11457548All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium588Open in IMG/M
3300029990|Ga0311336_10700352All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium868Open in IMG/M
3300029995|Ga0302210_10054254All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1152Open in IMG/M
3300031521|Ga0311364_10401234All Organisms → cellular organisms → Bacteria → Proteobacteria1391Open in IMG/M
3300031711|Ga0265314_10158492All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1380Open in IMG/M
3300031720|Ga0307469_12077946All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium552Open in IMG/M
3300031726|Ga0302321_100770517All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1083Open in IMG/M
3300031820|Ga0307473_11344193All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium536Open in IMG/M
3300031820|Ga0307473_11394644Not Available528Open in IMG/M
3300031833|Ga0310917_11194526All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium506Open in IMG/M
3300031858|Ga0310892_11175748All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium546Open in IMG/M
3300031873|Ga0315297_10428489All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1111Open in IMG/M
3300031912|Ga0306921_11018626All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium933Open in IMG/M
3300031941|Ga0310912_11279107All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium557Open in IMG/M
3300031997|Ga0315278_11772224All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium584Open in IMG/M
3300032008|Ga0318562_10134185All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1421Open in IMG/M
3300032180|Ga0307471_104166962All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium511Open in IMG/M
3300032397|Ga0315287_10051709All Organisms → cellular organisms → Bacteria4521Open in IMG/M
3300032401|Ga0315275_11361726All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium767Open in IMG/M
3300032420|Ga0335397_10421233All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1112Open in IMG/M
3300032954|Ga0335083_10883773All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium711Open in IMG/M
3300033004|Ga0335084_11141674All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium780Open in IMG/M
3300033413|Ga0316603_11738412All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium591Open in IMG/M
3300033418|Ga0316625_100818010All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium802Open in IMG/M
3300033487|Ga0316630_10461077All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1031Open in IMG/M
3300033488|Ga0316621_10879672All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium660Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.03%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere6.03%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil5.17%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen5.17%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment4.31%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.31%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment3.45%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands3.45%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.45%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.45%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere3.45%
WetlandEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland2.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.59%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.59%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.59%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.59%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.72%
FreshwaterEnvironmental → Aquatic → Freshwater → Pond → Sediment → Freshwater1.72%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.72%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil1.72%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.72%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.72%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.72%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.72%
Wetland SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment0.86%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.86%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.86%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater0.86%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.86%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.86%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.86%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.86%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.86%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.86%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.86%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.86%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.86%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.86%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.86%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.86%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.86%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.86%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000559Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemlyEnvironmentalOpen in IMG/M
3300002077Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3Host-AssociatedOpen in IMG/M
3300003861Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CREnvironmentalOpen in IMG/M
3300004000Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D2EnvironmentalOpen in IMG/M
3300004024Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004025Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1EnvironmentalOpen in IMG/M
3300004242Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Medium cellulose week 11EnvironmentalOpen in IMG/M
3300004808Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1FreshEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005204Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2EnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005993Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006224Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaGEnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300006575Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300009087Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009111Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1EnvironmentalOpen in IMG/M
3300009131Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011437Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2EnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012515Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610Host-AssociatedOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014322Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1EnvironmentalOpen in IMG/M
3300014885Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10DEnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300018029Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MGEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300025443Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025479Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027739Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Medium cellulose week 11 (SPAdes)EnvironmentalOpen in IMG/M
3300027877Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300027885Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)EnvironmentalOpen in IMG/M
3300027900Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)EnvironmentalOpen in IMG/M
3300027902Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)EnvironmentalOpen in IMG/M
3300027979Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028869Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_4EnvironmentalOpen in IMG/M
3300029989III_Fen_N1 coassemblyEnvironmentalOpen in IMG/M
3300029990I_Fen_N2 coassemblyEnvironmentalOpen in IMG/M
3300029995Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_2EnvironmentalOpen in IMG/M
3300031521III_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300031711Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaGHost-AssociatedOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031726Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031873Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031997Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0EnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032397Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0EnvironmentalOpen in IMG/M
3300032401Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0EnvironmentalOpen in IMG/M
3300032420Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-04 (spades assembly)EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033413Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCTEnvironmentalOpen in IMG/M
3300033418Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_AEnvironmentalOpen in IMG/M
3300033487Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_AEnvironmentalOpen in IMG/M
3300033488Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_CEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F14TC_10088586213300000559SoilMLSFDDDPAPAPQPRTAPVTPETIRAHAAGNVAGGILSPQFSREPVHDLDVEQQAMANGFRRVRMEDKRVING
F14TC_10153036743300000559SoilMLSFDDDFTAAPVLPKAGLRTPETIRAQVVGGILSREPVHDLDVEAQAMQNGFHRVRLEDKRVINAQADVNQLV
JGI24744J21845_1005745723300002077Corn, Switchgrass And Miscanthus RhizosphereMLSFDDDLAAAPTPPRAAPRTPQTILASSAGNIAGGILAPQLSNEPVHDLGVEAQAMQNGFRRVRLEDKRVINAQA
Ga0031654_1011606613300003861Freshwater Lake SedimentMLSFDDDIAPATQPRVAPPTPETIRAHISGTIASGILSREPVHDLDVERQAMENG
Ga0055458_1005531913300004000Natural And Restored WetlandsMLTFEDDFAAPAAKPMRQPATPETIRAHATGSIAGGLLSREPVHDLDVEAQALTNGFR
Ga0055436_1025341613300004024Natural And Restored WetlandsMLTFEDDFAAPAAKPMLQPATPETIRAQAAGGILSREPVHDLGVEAQAMANGFRRVRLEDKRVINGQA
Ga0055433_1010578323300004025Natural And Restored WetlandsMLSFDDDVAPAPQLRIAPATPETIRAQAVGNIASGILSREPVHDLDVERQAMENGFVRVRMEDKRVING
Ga0066601_1016019833300004242FreshwaterMLNFDDDVVPAAQPRLMPSTPETLRAQAMGTIGGGILTREPVHDLDADRQALENGFRRVRVEDKRVING
Ga0062381_1041315223300004808Wetland SedimentMLNFDDDLAPAPQPRLAPATPETIRAQATGGILSREPVHDLDVERQALENGFHRVRIEDKRVIN
Ga0062594_10054755013300005093SoilMLTFEDDFVTPAPQPRVLPATPETIRAQTTGGILSREPVHDLDVESQAMANGFRRVR
Ga0062594_10084279933300005093SoilMLSFDDDIVPAPQPRAARSTPETIRAQAAGSIASGILSREPVHDLDVEKQAMENGFRRVRMED
Ga0066676_1095289413300005186SoilMLTFDDDFMTPAPQPRSQPLTAEAIRAQAPGGILSREPMHDPDAEPHAMANGFRRVRAEDKRVIN
Ga0066675_1109916623300005187SoilMLTFEDDFVTPPAQPRVAPGSPEAMFAHAVGNIAGGILSPQLSNEPVHDLGAEAQALANGFRRVRAEDKR
Ga0068997_1006667323300005204Natural And Restored WetlandsMLSFDDDIAPVPQPRMAPATPGTIRAQAVGNIASGTLSREPVHDLDVERQAMENGFVRVRMEDKRVINGQSDVNQL
Ga0070676_1063981623300005328Miscanthus RhizosphereMLSFDDDITAAPTLPKPAPRTPETIRAQVAGGILSREPVHDLDVENQAMANGFSRVRVEDKRVINAQADVNQL
Ga0070690_10060161933300005330Switchgrass RhizosphereMLSFDDDVVPTAQPRAARPTPETIRAQAGGSIGSGILSREPVHDLDVERQAMENGFRRV
Ga0070670_10041354833300005331Switchgrass RhizosphereMLTFEDEFVTPAPQPRVLPATPETIRAQTTGGILSREPVHDLDVESQAMANGFRRVRAED
Ga0070670_10157589013300005331Switchgrass RhizosphereMLTFEDDFVTPAPQPRVLPATPETIRAQTTGGILSREPVHDLDVESQAMANGFRR
Ga0070666_1067963723300005335Switchgrass RhizosphereMLSFDDDFAAAPLLPKAAPRTPETILAQVTGGILSREPVHDLDVEAQAMQSGFRRVRIEDKR
Ga0070666_1075789413300005335Switchgrass RhizosphereMLSFDDDIVPAAQPRAARSKPETIRAQAGAGIGSGILSPQLSREPVHDLDVERQAMENGFRRVQMEDKRVING
Ga0070701_1098114723300005438Corn, Switchgrass And Miscanthus RhizosphereMLSFDDDIVPAPQPRAARSTPETIRAQAAGSIASGILSREPVHDLDVEKQAMENGFRRVRMEDKRVIN
Ga0070705_10125469123300005440Corn, Switchgrass And Miscanthus RhizosphereMLTFEDEFVTPAPQPRVLPATPETIRAQTTGGILSREPVHDLDVESQAMANGFRRV
Ga0070663_10082126813300005455Corn RhizosphereMLSFDDDIVPAAQPRAARSKPETIRAQAGAGIGSGILSPQLSREPVHDLDVERQAMENGFRRV
Ga0070662_10056272623300005457Corn RhizosphereMLNFDDDIAPAPPKLAPRTPETIRAQVTGGILSREPVHDLDVEAQAMQNNLSRVKL
Ga0070697_10191186223300005536Corn, Switchgrass And Miscanthus RhizosphereMLSFDDDIVPAPQLRVGRATPETIRAQAVGNIASGILSREPVHDLDVERQAMENGFRRVRMEDKRVINAAADVN
Ga0070702_10008888213300005615Corn, Switchgrass And Miscanthus RhizosphereMLSFDDDLAAAPTPPRAAPRTPQTILASSAGNIAGGILAPQLSNEPVHDLGVEAQAMQNGFRRVRLE
Ga0068864_10012685313300005618Switchgrass RhizosphereMLSFDDDLAAAPTPPRAAPRTPQTILASSAGNIAGGILAPQLSNEPVHDLGVEAQAMQNGFRRVRLEDKRVINAQADVNQLV
Ga0068864_10094847923300005618Switchgrass RhizosphereMLNFDDDIAPAPPKLAPRTPETIRAQVTGGILSREPVHDLDVEAQAMQNNLSRVKLED
Ga0068870_1002828813300005840Miscanthus RhizosphereMLSFDDDAPVPALAGRAPRTPETIRAQVLGGILSREPVHDIDVEQEAMPENFHRVRLEDKRVINGSADVNQL
Ga0080027_1012535213300005993Prmafrost SoilMLTFEDDFVTPSAQPRLQPQTPDTIRAHAVGIIAGGILSREPVHDLDAESHAMQNGFRRVRA
Ga0070716_10009313813300006173Corn, Switchgrass And Miscanthus RhizosphereMLTFEDEFVTPAPQPRVLPATPETIRAQTTGGILSREPVHDLDVESQAMANGFRRVR
Ga0070712_10034003533300006175Corn, Switchgrass And Miscanthus RhizosphereMLTFEDDFVTPSAQPMLQPSTPETIRAHAVGNIAGGILSPQLSNEPVHDLGVEAQAMQNGFRRVR
Ga0079037_10193996213300006224Freshwater WetlandsMLRFDDDIAPAPQPRVAPPAPETIRAHTAATIASGILSPHFSREPVHDLDVERQAMENGFRRVRMEDKRVIN
Ga0097621_10206577723300006237Miscanthus RhizosphereMLSFDDDVVPAPQPRAARSTPETIRAQAGGSIGSGILSREPVHDLDVERQAMENGFRRVQMEDK
Ga0075021_1017945243300006354WatershedsMLNFDDDPVPAPQPRLALVTPETIRAQAAGETLSREPVHDLDVEQQAMSNGFRRVRMEDKRV
Ga0074053_1121645113300006575SoilMLSFDDDVVPNAPRAARPTPETIRAQAGGSIGSGILSREPVHDLDVERQAMENGFRRVR
Ga0066659_1163715513300006797SoilMLTFEDDLIAPAMKPMMPSAAPETIRAQGSGGILSREPVHDLDVEAQAMANGFRRVRLEDKRVINGAADV
Ga0075421_10106319133300006845Populus RhizosphereMLSFDDDFTAAPALPKAAPRTPETIRAQVAGGILSREPVHDLDVEAQAMQNGFRRV
Ga0075433_1169612913300006852Populus RhizosphereMMMLSFDDDVPAPALPGHAPRTPETIRAQVLGGILSREPVHDIDVDKEAAPENFHRVRLEDKRVIN
Ga0068865_10056195633300006881Miscanthus RhizosphereMLTFEDEFVTPAPQPRVLPATPETIRAQTTGGILSREPVHDLDVESQAMANGFRRVRAEDKRVINAQSDVNQL
Ga0075424_10180062423300006904Populus RhizosphereMLTFEDDFVTPPVQPRGESRSPETQTAGGILSREPVHDLDAEQQALANGFRRV
Ga0105107_1061219813300009087Freshwater SedimentMLSFDDDIAPSPQPRLAPATPETILAQTAGGILSREPVHDLDVERQAMENGFRRVR
Ga0111539_1190734923300009094Populus RhizosphereMLTFEDDLIAPAVTPMMQSVTPETIRAQGSGGILSREPVHDLDVEAQAMANGFRRVRLEDKRVINGAA
Ga0115026_1059659833300009111WetlandMLSFDDDIIAPPAQPLLARATPQTPRAKAVGNLADGILSREPVHDLDVEHQAMVNGFRRVRLEDKRVINGQSDV
Ga0115027_1029006713300009131WetlandMLTFEDDLAAPAAQPLLQPATPETIRAQTAGGILSREPVHDLDVEKQAMDNGFRRVRMEDKRV
Ga0075423_1074584133300009162Populus RhizosphereMLTFEDEFVTPAPQPRVLPATPETIRAQTTGGILSREPVHDLDVESQAMANGFRRVRAEDKRVINA
Ga0134125_1162379123300010371Terrestrial SoilMLTFEDDFVTPAPQPRVLAATPETIRAQTTGGILSREPVHDLDVESQAMANGFRRVRAEDKRVIN
Ga0134122_1204101223300010400Terrestrial SoilMLSFDDDIVPAPQPRAARSTPETIRAQAAGNIASGILSREPVHDLDVEKQAMENGFRRVRMEDKRVI
Ga0134121_1191345023300010401Terrestrial SoilMLSFDDDVVPNAQPRAARPTPETIRAQASGILSPQFPREPVHDLDVERQAM
Ga0134123_1178188023300010403Terrestrial SoilMLSFDDDIVPAAQPRAARSKPETIRAQAGAGIGSGILSPQLSREPVHDLDVERQAMENGF
Ga0137429_125111823300011437SoilMLSFDDDIIAPPAQPQLARATPPTLRASAVGNLAGGILSREPVHDLDVERQAMVN
Ga0137372_1047852233300012350Vadose Zone SoilMTPQNDNEQHGESTMLTFEDDVSPASHPRMQPVTPETIRAQTAGGILSREPVHDLDVERHAMQNGFRR
Ga0137375_1127580313300012360Vadose Zone SoilMLNFDDDLAPAAQPRLQPATPETIRAQAAGGILSREPVHDLDVERQAMANGFRRVQMEDKRVINGSS
Ga0157338_109240223300012515Arabidopsis RhizosphereMLSFDDDITAAPTLRKPAPRTPETIRAQAVGGILSREPVHDLDVEQQAMSNGFRRVRMEDKRVING
Ga0137404_1143790813300012929Vadose Zone SoilMLTFEDDFVTPSARPQLQPQTPDTIRAHAVGNIAGGILSREPVHDLDAESHALQNGFRRVRAEDKRVIN
Ga0164298_1021962113300012955SoilMLTFEDDFVTPAPQPRVLPATPETIRAHAVGNIAGGILSREPVHDLDVESQAMANGFRRVRA
Ga0164303_1097111513300012957SoilMLTFEDDFVTPAPQPRVLAATPETIRAQTTGGILSREPVHDLDVESQAMANGFRRVRAEDKR
Ga0163162_1279938923300013306Switchgrass RhizosphereMLSFDDDIVPAAQPRAARSKPETIRAQAGAGIGSGLLSPQLSREPVHDLDVELQAMENGFRRVQM*
Ga0075355_110514433300014322Natural And Restored WetlandsMLNFDDDVVPAAQPRLMPSTPETLRAQAMGTIGGGILTREPVHDLDADRQAMENGFRRVRVED
Ga0180063_106135643300014885SoilMLTFDDDLAAPATKPQLQAATPETIRAHAVGNIAGGILSREPVHDLDAEAHAMANGFRRVRAEDKRVINAQS
Ga0157376_1080027733300014969Miscanthus RhizosphereMLSFDDDVVPTAQPRAARPTPETTRALAGGSIGSGILSPHFPREPVHDLDVERQAMENGFRRVQMED
Ga0132256_10306976613300015372Arabidopsis RhizosphereMLTFDDDVASAPAPRLAPVTPESLRAEGTGILVSPEPVHDLGVERQALENGFRRVRLEDKRVINASSD
Ga0132255_10099912533300015374Arabidopsis RhizosphereMLSFDDDITAAPTLPKPAPRTPETIRAQVAGGILSREPVHDLDVENQAMANGFSRVRVEDKRVINAQADV
Ga0132255_10114460143300015374Arabidopsis RhizosphereMLSFDDDVVPTAQPRVARSTPETIRALAAGSIGSGILSREPVHDLDVERQAME
Ga0187825_1031057623300017930Freshwater SedimentMLIFEDDFVTPAPQPRALPATPETIRAQTTGGILSREPVHDLDVESQAMANGFRRVRAEDKRVINA
Ga0187777_1023373333300017974Tropical PeatlandMLSFDDDVPAPALPGRQPRTPETIRAQVLGGILSREPVHDIDVEKETANGFHRVRLEDKR
Ga0187787_1037270313300018029Tropical PeatlandMLTFDDDVAPAPAPRLAPVTPETLRAQGAGILASPEPVHDLDVERQAMENGFRRV
Ga0066667_1104563413300018433Grasslands SoilMLTFEDDFVTPLAQPRLPPQTPDTIRAHAVGNIASGMLSREPVHDLDAESQAMQNGLR
Ga0190274_1071037433300018476SoilMLSFDDDFTAAPVLPKAAPRTPETIRAHVSGQIAGGILSREPVHDLDVEAQAMQNGFRRVRLEDKRVINAQADVNQLV
Ga0208081_104777813300025443Arctic Peat SoilMLSFDDDFVAAPIQPGLSPSTPETIRAQVAGGILSREPVHDLDVEKQAAPETFGRVRVEDKRVINGTADV
Ga0208588_106969223300025479Arctic Peat SoilMLSFDDDFAATATAPVLAPRTPETIRAQVTGGILSREPVHDIDTEKEVNAEGFHRVRVEDKRVI
Ga0207663_1160186623300025916Corn, Switchgrass And Miscanthus RhizosphereMLTFEDDFVTPSAQPMLQPSTPETIRAHAVGNIARGILSPQLSNEPVHDLGVEAQAMQNGFRRVRAEDKRVINAQS
Ga0207657_1103851213300025919Corn RhizosphereMQTLSFDDDLAAAPTPPRAAPRTPQTILASSAGNIAGGILAPQLSNEPVHDLGVEAQAMQNGFRRVRLEDKRVINAQADVNQL
Ga0207667_1025929233300025949Corn RhizosphereMLSFDDDAPVPALAGRAPRTPETIRAQVLGGILSREPVHDIDVEQEAMPENFHRVRLEDKRVINGSAD
Ga0207712_1139559723300025961Switchgrass RhizosphereMLTFEDDFTAPAVKPTLRPATPDTIRAHVAGNIAGGLLSREPVHDLDVEKQAMANGFRRVRLEDKRVINAQ
Ga0207668_1129406213300025972Switchgrass RhizosphereMLSFDDDIVPAAQPRAARSKPETIRAQAGAGIGSGILSPQLSREPVHDLDVERQAMENGFRRVQMEDK
Ga0207658_1051624513300025986Switchgrass RhizosphereMLSFDDDIVPTAQPRAARSKPETIRAQAGAGIGSGILSPQLSREPVHDLDVARQ
Ga0207658_1095543833300025986Switchgrass RhizosphereMLSFDDDIVPAPQPRAARSTPETIRAQAAGSIASGILSREPVHDLDVEKQAMENGFR
Ga0207639_1022949613300026041Corn RhizosphereMLTFEDDFVTPAPQPRVLPATPETIRAQTTGGILSREPVHDLDVESQAMANGFRRVRAEDKR
Ga0207678_1072632633300026067Corn RhizosphereMLSFDDDIVPAAQPRAARSKPETIRAQAGAGIGSGILSPQLSREPVHDLDVERQAMENGFRRVQMED
Ga0207698_1059102543300026142Corn RhizosphereMLTFEDDFHAPAAMPSLQPATPETILAQTSGGILSREPVHDLDVEAQAMSNGFRRVRLEDKRVINGQADLN
Ga0209575_1016097333300027739FreshwaterMLNFDDDVVPAAQPRLMPSTPETLRAQAMGTIGGGILTREPVHDLDADRQALENGFR
Ga0209293_1079066113300027877WetlandMLSFDDDIIAPPAQPLLARATSQTPRAKAVGNLADGILSREPVHDLDVERQAMVNGFRRVRLEDKRVINGQSDVNQL
Ga0209450_1032891913300027885Freshwater Lake SedimentMLNFDDDIVTPAAQPQLQPVTPDTIRAQASGSIGGGILSREPVHDLEVERQAMENGFR
Ga0209253_1068440613300027900Freshwater Lake SedimentMLSFDDDIAPATQPRVAPPTPETIRAHTSGTIASGILSREPVHDLDVERQAMENGFRRVRLEDK
Ga0209048_1002214513300027902Freshwater Lake SedimentMLNFDDDIAPAAQPRLSPATPETIRAQTAGGILSREPVHDLDVERQAMENGFRRVRLEDKRVING
Ga0209048_1068662523300027902Freshwater Lake SedimentMLSFDDDISPAAQPRFAPPAPERSRAARAPATIASGILSPHFSREPVHDLDVERQAMDS
Ga0209705_1003249553300027979Freshwater SedimentMLSFDDDIAPSPQPRLAPATPETILAQTAGGILSREPVHDLDVERQAMENGFRRVRVEDKRVINAQ
Ga0268264_1093701323300028381Switchgrass RhizosphereMLNFDDDIAPAPPKLAPRTPETIRAQVTGGILSREPVHDLDVEAQAMQNNLSRVKLEDKRVIN
Ga0302263_1020694523300028869FenMLSFDDDFAATPNAPGLAPRTPETIRAQVTGGILSREPVHDIDTEKEVNAEGFHRVRVED
Ga0311365_1145754813300029989FenMLSFDDDFAATPNAPGLAPRTPETIRAQVMGGILSREPVHDIDTEKEAGPENFHRVRVEDKRVINGTADV
Ga0311336_1070035213300029990FenMLNFDDDLAPAPQPRLALVTPETMLAQSMGGILSREPVHDLDVEQQAMANGFR
Ga0302210_1005425433300029995FenMLSFDDDFAATPNAPGLSPRTPETIRAQITGGILSREPVHDIDTEKEVNAEGFHRVRVEDKRVINGTA
Ga0311364_1040123433300031521FenMLSFDDDFVAAPIQPGLSPSTPETIRAQVAGGILSREPVHDLDVEKQAAPETFGRVRVEDKRVIN
Ga0265314_1015849213300031711RhizosphereMLNFDDDIAPAPQLRVAPATPETIRAQTTGGILSREPVHDLDVERQAMENGFRRVRL
Ga0307469_1207794623300031720Hardwood Forest SoilMLTFEDDVVPAPKPRVARPTPETIRAQAEGSIASGIFSREPVHDLDVERQAMENGFRRVRLEDK
Ga0302321_10077051733300031726FenMLSFDDDFAATPTAPALAPRTPETIRAQVTGGILSREPVHDIDTEKEDTPENFHRVRVEDKRVINGTAD
Ga0307473_1134419323300031820Hardwood Forest SoilMLTFEDDFVTPGPQPILQPETPDTIRAQTTGGILSREPVHDLDAEQQALSNG
Ga0307473_1139464413300031820Hardwood Forest SoilMLIFEDDFVTPDPKPRLQPATAETIRAHAVGNIDGGFLSREPVHDLDVETQAMANGFRRVRAEDKRVINGQSDVNQL
Ga0310917_1119452623300031833SoilMLSFDDDIAPIPQPRVPRATPETIRAQAAGNIASGILSREPVHDLDVERQAMENGFRRVRLEDK
Ga0310892_1117574823300031858SoilMLSFDDDIVPAPQPRAARSTPETIRAQAGGSIGSGILSREPVHDLDVERQAMENGFRRV
Ga0315297_1042848913300031873SedimentMLSFDDDFAAAPIAPGLSPRTPETIRAQAVGTIGGGVLSREPVHDIDVEKEAMPENFHRVRVEDKRVINGTADVNQL
Ga0306921_1101862613300031912SoilMLSFDDDFIAAPALPKVAPRTPETIRAQVAGGILSREPVHDLDVEAQAMQNGFRRVRLEDKRVINAQ
Ga0310912_1127910723300031941SoilMLSFDDDIPAPQPRVPRATPETMRAQALGQIASGILSREPVHDLDVEKQAMENGFRRVRLEDKRVIN
Ga0315278_1177222413300031997SedimentMLTFEDDFVAPVTKPMLQPATPETIRAHAAGNIAGGILSREPVHDLDVEAQAMANGFRRVRLEDKRV
Ga0318562_1013418543300032008SoilMLSFDDDIPAPQPRVPRATPETMRAQALGQIASGILSREPVHDLDVEKQAMENGFRRVRLEDKRVINGASDV
Ga0307471_10416696223300032180Hardwood Forest SoilMLTFDDDVAPAPAPRLALVTPETLRAQGAGILASPEPVHDLDVERQALENGFRRVRLEDKRVINASSD
Ga0315287_1005170913300032397SedimentMLTFEDDFVAPAAQPMLQPATPETIRAHASGSIGGGILSREPVHDLDVETQAMTNG
Ga0315275_1136172633300032401SedimentMLTFEDDFVAPAAKPMLQPATPETIRAQGSGNIAGGILSREPVHDLDVEAQAMTN
Ga0335397_1042123313300032420FreshwaterMLSFDDDAPAAALPSRAPRTPETIRAHVLGNIGGGILSREPVHDIDVDKEAAPENFHRVRVEDKRVIN
Ga0335083_1088377313300032954SoilMLSFDDDIAPAPQPPRAARATPETIRAQAAGSIASGILSREPVHDLDVERQAMENGFRRVRLEDKRVINGASD
Ga0335084_1114167413300033004SoilMLSFDDDAPTPALPGRQPRTPETIRAQVLGGILSREPVHDIDVEKETADGFHRVRLEDKRVINGAAD
Ga0316603_1173841213300033413SoilMLRFDDDIAPAPKPRVAPPTPETIRAHTAGTIASGILSREPVHDLDVERQAMENGF
Ga0316625_10081801013300033418SoilMLTFEDDFAAPATQPLLQPATPETIRAQTTGGILSREPVHDLDVEQQALANGFRR
Ga0316630_1046107713300033487SoilMLRFDDDIAPAPQPRVAPPAPETIRAHTATTIASGILSPHFSREPVHDLDVERQAMENGFRRVR
Ga0316621_1087967223300033488SoilMLTFDDDLATPAARPALQPATPETIRAQTTGGILSREPVHDLDVEQQALANGFRRV

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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