Metagenome / Metatranscriptome Family F079121

Basic Information
Family ID	F079121
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	41 residues
Representative Sequence	GMKSLEGELNRCLNDSDPLLRETARAAKLRLDALAAKA
Number of Associated Samples	106
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.14 %
% of genes from short scaffolds (< 2000 bps)	90.52 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Most Common Taxonomy
Group	Bacteria (93.966 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.862 % of family members)
Environment Ontology (ENVO)	Unclassified (35.345 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.517 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.48% β-sheet: 0.00% Coil/Unstructured: 51.52%
Feature Viewer

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Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01431	Peptidase_M13	1.72
PF13649	Methyltransf_25	1.72
PF02885	Glycos_trans_3N	0.86
PF13470	PIN_3	0.86
PF00092	VWA	0.86
PF13519	VWA_2	0.86
PF00149	Metallophos	0.86
PF13432	TPR_16	0.86
PF13466	STAS_2	0.86
PF05977	MFS_3	0.86
PF02558	ApbA	0.86
PF00069	Pkinase	0.86
PF08808	RES	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.45
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	1.72
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.86
COG5654	Predicted toxin component of a toxin-antitoxin system, contains RES domain	Defense mechanisms [V]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.83 %
Unclassified	root	N/A	5.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.83 %
Unclassified	root	N/A	5.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.97 %
Unclassified	root	N/A	5.17 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	87.93 %
Unclassified	root	N/A	5.17 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	52.59 %
Unclassified	root	N/A	5.17 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.59 %
Unclassified	root	N/A	5.17 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.86 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.59 %
Unclassified	root	N/A	5.17 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.86 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.59 %
Unclassified	root	N/A	5.17 %
Lysobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter	0.86 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.59 %
Unclassified	root	N/A	5.17 %
unclassified Lysobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter	0.86 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.59 %
Unclassified	root	N/A	5.17 %
Lysobacter sp. URHA0019	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. URHA0019	0.86 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100940004	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	748	Open in IMG/M
3300002562\|JGI25382J37095_10073298	All Organisms → cellular organisms → Bacteria → Acidobacteria	1272	Open in IMG/M
3300002910\|JGI25615J43890_1087380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300004152\|Ga0062386_100219908	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1498	Open in IMG/M
3300004152\|Ga0062386_101092999	All Organisms → cellular organisms → Bacteria → Acidobacteria	662	Open in IMG/M
3300004479\|Ga0062595_100030786	All Organisms → cellular organisms → Bacteria → Acidobacteria	2204	Open in IMG/M
3300004631\|Ga0058899_11374761	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300005187\|Ga0066675_10813945	All Organisms → cellular organisms → Bacteria → Acidobacteria	706	Open in IMG/M
3300005437\|Ga0070710_10635368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	747	Open in IMG/M
3300005468\|Ga0070707_100465985	All Organisms → cellular organisms → Bacteria → Acidobacteria	1224	Open in IMG/M
3300005518\|Ga0070699_101915676	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300005554\|Ga0066661_10084246	All Organisms → cellular organisms → Bacteria → Acidobacteria	1878	Open in IMG/M
3300005557\|Ga0066704_10030505	All Organisms → cellular organisms → Bacteria → Acidobacteria	3285	Open in IMG/M
3300006086\|Ga0075019_10258777	All Organisms → cellular organisms → Bacteria → Acidobacteria	1040	Open in IMG/M
3300006173\|Ga0070716_100380181	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1009	Open in IMG/M
3300006174\|Ga0075014_100132128	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1201	Open in IMG/M
3300006358\|Ga0068871_101741737	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300007255\|Ga0099791_10518373	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300007255\|Ga0099791_10615144	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300007258\|Ga0099793_10360503	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	711	Open in IMG/M
3300007265\|Ga0099794_10387986	All Organisms → cellular organisms → Bacteria → Acidobacteria	729	Open in IMG/M
3300009012\|Ga0066710_102323943	All Organisms → cellular organisms → Bacteria → Acidobacteria	779	Open in IMG/M
3300009090\|Ga0099827_11881453	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300009143\|Ga0099792_11216958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300009176\|Ga0105242_11668648	All Organisms → cellular organisms → Bacteria → Acidobacteria	673	Open in IMG/M
3300009545\|Ga0105237_12298678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300010047\|Ga0126382_11784298	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300010143\|Ga0126322_1072939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300010146\|Ga0126320_1077012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	620	Open in IMG/M
3300010336\|Ga0134071_10217294	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	946	Open in IMG/M
3300010341\|Ga0074045_10694451	All Organisms → cellular organisms → Bacteria → Acidobacteria	646	Open in IMG/M
3300010360\|Ga0126372_11063060	All Organisms → cellular organisms → Bacteria → Acidobacteria	825	Open in IMG/M
3300010364\|Ga0134066_10128158	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	772	Open in IMG/M
3300010391\|Ga0136847_12670389	Not Available	513	Open in IMG/M
3300011120\|Ga0150983_10396256	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300011120\|Ga0150983_16247321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300011269\|Ga0137392_10129522	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2021	Open in IMG/M
3300011269\|Ga0137392_10572363	All Organisms → cellular organisms → Bacteria → Acidobacteria	938	Open in IMG/M
3300011271\|Ga0137393_10213956	All Organisms → cellular organisms → Bacteria → Acidobacteria	1629	Open in IMG/M
3300011271\|Ga0137393_11779282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300012189\|Ga0137388_10909611	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	814	Open in IMG/M
3300012201\|Ga0137365_10993110	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300012202\|Ga0137363_10170041	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1728	Open in IMG/M
3300012205\|Ga0137362_11151043	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	659	Open in IMG/M
3300012205\|Ga0137362_11252309	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300012205\|Ga0137362_11292051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300012208\|Ga0137376_10691479	All Organisms → cellular organisms → Bacteria → Acidobacteria	880	Open in IMG/M
3300012351\|Ga0137386_10200502	All Organisms → cellular organisms → Bacteria → Acidobacteria	1433	Open in IMG/M
3300012363\|Ga0137390_11081201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300012582\|Ga0137358_10374710	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	963	Open in IMG/M
3300012582\|Ga0137358_10639781	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300012922\|Ga0137394_10280645	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
3300012924\|Ga0137413_10458512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	929	Open in IMG/M
3300012927\|Ga0137416_10067850	All Organisms → cellular organisms → Bacteria → Acidobacteria	2575	Open in IMG/M
3300012944\|Ga0137410_10094442	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2207	Open in IMG/M
3300012957\|Ga0164303_10517161	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300012960\|Ga0164301_10863925	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300012961\|Ga0164302_11793161	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300012971\|Ga0126369_12522685	All Organisms → cellular organisms → Bacteria → Acidobacteria	599	Open in IMG/M
3300014166\|Ga0134079_10264723	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300014168\|Ga0181534_10630706	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	620	Open in IMG/M
3300014969\|Ga0157376_11566980	All Organisms → cellular organisms → Bacteria → Acidobacteria	693	Open in IMG/M
3300014969\|Ga0157376_11960493	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300015357\|Ga0134072_10091100	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	922	Open in IMG/M
3300016387\|Ga0182040_11671608	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300016404\|Ga0182037_11333824	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300017936\|Ga0187821_10018036	Not Available	2448	Open in IMG/M
3300017936\|Ga0187821_10202581	All Organisms → cellular organisms → Bacteria → Acidobacteria	763	Open in IMG/M
3300017994\|Ga0187822_10140567	All Organisms → cellular organisms → Bacteria → Acidobacteria	769	Open in IMG/M
3300018034\|Ga0187863_10822809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300018059\|Ga0184615_10048632	All Organisms → cellular organisms → Bacteria → Acidobacteria	2361	Open in IMG/M
3300018088\|Ga0187771_10754132	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300018482\|Ga0066669_10869312	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	804	Open in IMG/M
3300019082\|Ga0187852_1114892	All Organisms → cellular organisms → Bacteria → Acidobacteria	1171	Open in IMG/M
3300019789\|Ga0137408_1031387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300020010\|Ga0193749_1027970	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1097	Open in IMG/M
3300020199\|Ga0179592_10086043	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300021168\|Ga0210406_10164308	All Organisms → cellular organisms → Bacteria → Acidobacteria	1858	Open in IMG/M
3300021178\|Ga0210408_10305600	All Organisms → cellular organisms → Bacteria → Acidobacteria	1268	Open in IMG/M
3300021180\|Ga0210396_10417007	All Organisms → cellular organisms → Bacteria → Acidobacteria	1180	Open in IMG/M
3300021479\|Ga0210410_10129295	All Organisms → cellular organisms → Bacteria → Acidobacteria	2243	Open in IMG/M
3300022506\|Ga0242648_1054724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300022508\|Ga0222728_1072165	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300022522\|Ga0242659_1096445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300022532\|Ga0242655_10226700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300022563\|Ga0212128_10819493	Not Available	552	Open in IMG/M
3300022724\|Ga0242665_10037914	All Organisms → cellular organisms → Bacteria → Acidobacteria	1224	Open in IMG/M
3300022726\|Ga0242654_10238151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300024310\|Ga0247681_1032449	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	775	Open in IMG/M
3300025160\|Ga0209109_10118615	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1352	Open in IMG/M
3300025289\|Ga0209002_10370830	Not Available	822	Open in IMG/M
3300025922\|Ga0207646_10275882	All Organisms → cellular organisms → Bacteria → Acidobacteria	1519	Open in IMG/M
3300025934\|Ga0207686_11437400	All Organisms → cellular organisms → Bacteria → Acidobacteria	568	Open in IMG/M
3300025935\|Ga0207709_10355679	All Organisms → cellular organisms → Bacteria → Acidobacteria	1107	Open in IMG/M
3300025990\|Ga0208527_1018864	All Organisms → cellular organisms → Bacteria → Acidobacteria	826	Open in IMG/M
3300026078\|Ga0207702_11695106	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300026324\|Ga0209470_1269526	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300026497\|Ga0257164_1003194	All Organisms → cellular organisms → Bacteria → Acidobacteria	1675	Open in IMG/M
3300026550\|Ga0209474_10425001	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300027616\|Ga0209106_1073876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	764	Open in IMG/M
3300027768\|Ga0209772_10161745	All Organisms → cellular organisms → Bacteria → Acidobacteria	704	Open in IMG/M
3300027846\|Ga0209180_10411366	All Organisms → cellular organisms → Bacteria → Acidobacteria	765	Open in IMG/M
3300027882\|Ga0209590_10350176	All Organisms → cellular organisms → Bacteria → Acidobacteria	952	Open in IMG/M
3300028293\|Ga0247662_1051130	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300028536\|Ga0137415_10020442	All Organisms → cellular organisms → Bacteria	6560	Open in IMG/M
3300029999\|Ga0311339_10653954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. URHA0019	1036	Open in IMG/M
3300031057\|Ga0170834_113491174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300031231\|Ga0170824_125692070	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300031525\|Ga0302326_10063400	All Organisms → cellular organisms → Bacteria	6912	Open in IMG/M
3300031679\|Ga0318561_10104679	All Organisms → cellular organisms → Bacteria	1490	Open in IMG/M
3300031821\|Ga0318567_10256375	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	983	Open in IMG/M
3300031942\|Ga0310916_10976733	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	707	Open in IMG/M
3300032174\|Ga0307470_10517231	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	874	Open in IMG/M
3300032892\|Ga0335081_12371490	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300032954\|Ga0335083_11034882	Not Available	644	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.10%
Host-Associated	Host-Associated	6.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.31%
Aquatic	Environmental → Aquatic	13.79%
Plants	Host-Associated → Plants	6.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.72%
Freshwater	Environmental → Aquatic → Freshwater	10.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.17%
Sediment	Environmental → Aquatic → Sediment	2.59%
Peat	Environmental → Terrestrial → Peat	1.72%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.86%
Cave	Environmental → Terrestrial → Cave	0.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.86%
Roots	Host-Associated → Plants → Roots	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.79%
Loam	Environmental → Terrestrial → Soil → Loam	8.62%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.59%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.72%
Lake	Environmental → Aquatic → Freshwater → Lake	0.86%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.86%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.86%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.07%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.10%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.31%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.72%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.86%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.86%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.86%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.86%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.45%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.59%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.59%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.72%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.72%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.72%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.86%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.86%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010143	Soil microbial communities from Mekong Delta, Cambodia to study soil gas exchange rates - MK-CA-DRY metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024310	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK22	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025289	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025990	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_102 (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028293	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK03	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079121

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1009400043	3300002245	Forest Soil	IKSLEDQLDRCLNESDPLLRETARAAKRRLEALAAKP*
JGI25382J37095_100732983	3300002562	Grasslands Soil	AIGTFGMKSLEGELNRCLNDSDPLLRETARAAKLRLDALAAKA*
JGI25615J43890_10873801	3300002910	Grasslands Soil	GTLGMISLQTELDKCLEHPDPLLRETARAAKLRLGTAAKP*
Ga0062386_1002199081	3300004152	Bog Forest Soil	AIGFFRIQTLGGELERCLNHADALLRETARAAKLRLEASETEL*
Ga0062386_1010929992	3300004152	Bog Forest Soil	AIGFFRIQTLGGELERCLNHRDALLRETARAAKHRLDASETEL*
Ga0062595_1000307864	3300004479	Soil	GTFGLLTLESELNRCLSDSDPLLRETARAAKLRLEARAAKA*
Ga0058899_113747612	3300004631	Forest Soil	LGMKSLEVELNRCLEHPDPLLRETARAAKLRLDALALKS*
Ga0066675_108139451	3300005187	Soil	CGAYAIGTFGLLTLESELNRCLSDSDPLLRETARAAKLRLEARAAKA*
Ga0070710_106353682	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	TFAITSLEGELGPCLEHPDPLLRETARAAKIRLQSLGANR*
Ga0070707_1004659852	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	AYAIGTFGLKSLEFELDRCLNDSDPLLRETARAAKLRLEGAAAKA*
Ga0070699_1019156761	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	TLGMNSLQVELDKCLEHPDPLLRETARAAKLRLVALAAKS*
Ga0066661_100842464	3300005554	Soil	KSLECELDRCLNDSDPLLRETARAAKLRLAGSAAKA*
Ga0066704_100305055	3300005557	Soil	IKSLEGQLDGCLNEADPLLRETARAAKLRLEALAAKS*
Ga0075019_102587771	3300006086	Watersheds	IGSFQMRSLAGELDRCLGHADPLLRETARAAKLRLTNANENS*
Ga0070716_1003801811	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	GMKSLEAELNRCLEHPDPLLRETARTAKLRLEALAANS*
Ga0075014_1001321281	3300006174	Watersheds	IKSLAGELGQCLEHPDPLLRETALAAKLRLEALAADP*
Ga0068871_1017417372	3300006358	Miscanthus Rhizosphere	HAVGVFGLRSLEGQLNRLLNDSDPLLRETARASKLRLEALVTRSET*
Ga0099791_105183732	3300007255	Vadose Zone Soil	GIKSLEDHLDRCLNESDPLLRETARAANLRLEALATKS*
Ga0099791_106151442	3300007255	Vadose Zone Soil	GIRSLEDQLDRCLNESDPLLRETARAAKLRLEALAAKS*
Ga0099793_103605033	3300007258	Vadose Zone Soil	LEDQLDRCLTESDPLLRETARAAKLRLEALAAKS*
Ga0099794_103879861	3300007265	Vadose Zone Soil	GTFGLKSLEFELDRCLNDSDPLLRETARAAKLRLEGPVAKA*
Ga0066710_1023239431	3300009012	Grasslands Soil	IGSFGLKSLEGELNRCLNDSDPLLRETARAAKLRLETLAAKA
Ga0099827_118814532	3300009090	Vadose Zone Soil	GTFGLKSLEGELHRCLNDTDPLLRETARAAKVRLEAAVVKRVDIRS*
Ga0099792_112169582	3300009143	Vadose Zone Soil	AYAIGALGIKSLENQLDRCLNESDPLLRETARAAKLRLEAPAAKP*
Ga0105242_116686482	3300009176	Miscanthus Rhizosphere	YAVGALGLRSLEDHLNRCLNDSDPLLRETARAAKLRLEALVTKA*
Ga0105237_122986781	3300009545	Corn Rhizosphere	GTFGLKSLEGELQRCLNDADPLLRETARAAKMRLEAAAVKGVDIRS*
Ga0126382_117842982	3300010047	Tropical Forest Soil	ALGLKSLEMELNRCLKHPDPLLRETARTAKHRLEMHTTNL*
Ga0126322_10729392	3300010143	Soil	GTFAITSLEQKLTECLEHSDPLLRETARAAKLRLQALASQP*
Ga0126320_10770122	3300010146	Soil	CGAYAIGTFAITSLEDKLGECLEHPDPLLRETARAAKLRLQALSPQS*
Ga0134071_102172943	3300010336	Grasslands Soil	IGTLGIKSLEDQLDRCLNESDPLLRETARAAKLRLEALAAKS*
Ga0074045_106944511	3300010341	Bog Forest Soil	ITSLEAELERCLQDPDPLLRETARAAKLRLEALTRES*
Ga0126372_110630601	3300010360	Tropical Forest Soil	AYAIGNLRMRSLEAQLNRCLQDPDPLLRETARVAKQRLAESATA*
Ga0134066_101281582	3300010364	Grasslands Soil	GMKSLEGELNRCLNDSDPLLRETARAAKLRLDALAAKA*
Ga0136847_126703891	3300010391	Freshwater Sediment	LKTLESALDACLNHPDPLLRETARQAKLRLAALTEPTTA*
Ga0150983_103962561	3300011120	Forest Soil	LGIRSLEDQLDRCLNGSDPLLRETARAAKLRLEALAAKS*
Ga0150983_162473212	3300011120	Forest Soil	AYAIGTLGMKSLEAELSRCLEHPDPLLRETARAAKLRLEALPAKS*
Ga0137392_101295226	3300011269	Vadose Zone Soil	KSLEGQLDRCLNESDPLLRETARAAKLRLEALAAKS*
Ga0137392_105723631	3300011269	Vadose Zone Soil	AIGTFGLKSLESDLNRCLNDSDPLLRETARAAKLRLAALVANP*
Ga0137393_102139561	3300011271	Vadose Zone Soil	IKSLEGELNRCLNDSDPLLRETARAAKQRLEQLAGKAP*
Ga0137393_117792822	3300011271	Vadose Zone Soil	GAYAIGTFGMKSLEGELNRCLNDSDSLLRETARAAKLRLDALAAKA*
Ga0137388_109096111	3300012189	Vadose Zone Soil	KSLEDQLDRCLNESDPLLRETARAAKLRLEALTAKS*
Ga0137365_109931101	3300012201	Vadose Zone Soil	SLEDQLDRCLNESDPLLRETARAAKLRLEALAAKS*
Ga0137363_101700414	3300012202	Vadose Zone Soil	AYAIGALGIKSLENQLDRCLNESDPLLRETARAAKLRLEAPAVKP*
Ga0137362_111510431	3300012205	Vadose Zone Soil	AYAIGTFGLKSLEFELDRCLNDSDPLLRETARAAKLRLEGPAAKA*
Ga0137362_112523092	3300012205	Vadose Zone Soil	MKSLEGELNRCLNDSDPLLRETARAAKLRLDALAAKA*
Ga0137362_112920511	3300012205	Vadose Zone Soil	TLGIKSLEDQLDRCLNESDPLLRETARAAKLRLEAIAAKP*
Ga0137376_106914792	3300012208	Vadose Zone Soil	SFGMKSLECELDRCLNDSDPLLRETARAAKLRLAGSAAKA*
Ga0137386_102005023	3300012351	Vadose Zone Soil	AIGNLRMKSLEPQLNHCLDDPDPLLRETARAAKQRLQEFAKA*
Ga0137390_110812011	3300012363	Vadose Zone Soil	KSLEDRLDRCLNESDPLLRETARAAKLRLEALAAKS*
Ga0137358_103747103	3300012582	Vadose Zone Soil	GTLGIKSLESQLDRCLNESDPLLRETARAAKLRLDALAAKP*
Ga0137358_106397811	3300012582	Vadose Zone Soil	ISLQTELDKCLEHPDPLLRETARAAKLRLGAAAKP*
Ga0137394_102806453	3300012922	Vadose Zone Soil	LEGQLDGCLNESDPLLRETARAAKLRLEALAAKS*
Ga0137413_104585123	3300012924	Vadose Zone Soil	AYAIGTLGMISLQTELDKCLEHPDPLLRETARAAKLRLGTAAKP*
Ga0137416_100678501	3300012927	Vadose Zone Soil	GTFGLKSLECELDRCLNDSDPLLRETARAAKLRLAGSAAKA*
Ga0137410_100944421	3300012944	Vadose Zone Soil	IKSLEVELNRCLEHPDPLLRETARAAKLRLEALAAKS*
Ga0164303_105171612	3300012957	Soil	KSLEPELNRCLEHPDPLLRETARAAKVRLEALAANS*
Ga0164301_108639252	3300012960	Soil	GTLGIKSLADQLDRCLNESDPLLRETARAAKLRLEALAAKS*
Ga0164302_117931612	3300012961	Soil	LKSLETQLDRCLNDSDPLVRETARAAKLRLEALATKM*
Ga0126369_125226852	3300012971	Tropical Forest Soil	IGTLGIKSLEGQLDRCLNESDPLLRETARAAKLRQEALAAKS*
Ga0134079_102647232	3300014166	Grasslands Soil	SLEGELNRCLNDSDPLLRETARAAKLRLDALAAKA*
Ga0181534_106307062	3300014168	Bog	LEEELKRCLEDPDPLLRETARAAKLRLEALTPES*
Ga0157376_115669801	3300014969	Miscanthus Rhizosphere	IGTFGLKSLEGELQRCLNDADPLLRETARAAKMRLEAAAVKGVDIRS*
Ga0157376_119604931	3300014969	Miscanthus Rhizosphere	LGIRSLEGELDRCMNDPDPLLRETARAAKVKLDQLTKAEIA*
Ga0134072_100911001	3300015357	Grasslands Soil	KSLEAELNRCLEHPDPLLRETARTAKLRLQALAANS*
Ga0182040_116716081	3300016387	Soil	IKSLEGELNRCLNDSDPLLRETARAAKLHLQEIVAKA
Ga0182037_113338241	3300016404	Soil	PGIKALEMALTHCLEHPAPLLRETARTAKLRLETLRARS
Ga0187821_100180364	3300017936	Freshwater Sediment	AYAVGALGLKSLEGELNRCLNDSDPLLRETARAAKLRLEALIEKA
Ga0187821_102025812	3300017936	Freshwater Sediment	GAYAIGSLGLKSLEDQLNQCLDHPDALLRETARAAKLRLGPQSQSAGA
Ga0187822_101405672	3300017994	Freshwater Sediment	VGALGLKSLEGELNRCLNDSDPLLRETARAAKLRLEALIEKA
Ga0187863_108228092	3300018034	Peatland	SCGAYAIGMFGMRSLEGELNRCLNDTDPLLREAARAAKQLLEALVTKA
Ga0184615_100486324	3300018059	Groundwater Sediment	TLGLRELEAELDLCLEHADPLLRETARQAKLRLAAGPDVQRGL
Ga0187771_107541321	3300018088	Tropical Peatland	AYAIGTFAVRSLEGELSSCLDHPDPLLRETARAAKLRLEALAPSVRDRVAS
Ga0066669_108693121	3300018482	Grasslands Soil	YAIGTLGMKSLEAELNRCLEHPDPLLRETARTAKRRLEALAANS
Ga0187852_11148922	3300019082	Peatland	SCGAYAIGNFGLKSLEGELNRCLNDTDPLLRETARTAKLRLEALATKA
Ga0137408_10313872	3300019789	Vadose Zone Soil	GMKASEGELNRCLNDSDPLLRETARAAKLRLDALAAKA
Ga0193749_10279701	3300020010	Soil	YAIGTLGMISLQSELDKCLEHPDPLLRETARAAKLRLETAAKP
Ga0179592_100860433	3300020199	Vadose Zone Soil	AYAIGTLGIKSLEEQLDRCLNESDPLLRETARAAKLRLDAPVAKP
Ga0210406_101643081	3300021168	Soil	AIGTFGLKSLEYELDRCLNDSDPLLRETARAAKLRL
Ga0210408_103056001	3300021178	Soil	GIKSLEGELHRCLNDADPLLRETARAAKLRLDAVAKGVEIE
Ga0210396_104170072	3300021180	Soil	AYAIGTFGIKSLEGELHRCLNDADPLLRETARAAKLRLDAVAKGVEIE
Ga0210410_101292951	3300021479	Soil	LHRCLNDADPLLRETARAAKVRLEAAVVKSVDIRS
Ga0242648_10547242	3300022506	Soil	GIKSLEHQLDQCLNESDPLLRETARAAKLRLDALAAKP
Ga0222728_10721652	3300022508	Soil	GIKSLEHQLDRCLNESDPLLRETARAAKLRLDALAAKP
Ga0242659_10964452	3300022522	Soil	LGMKSLEAELSRCLEHPDPLLRETARAAKLRLEALTAKS
Ga0242655_102267002	3300022532	Soil	GAYAIGSLGIKSLEHQLDQCLNEADPLLRETARAAKLRLDALAAKP
Ga0212128_108194932	3300022563	Thermal Springs	GAYAIGSLGLKSLELHLDGCLSHSDPLLRETARQAKLRLATAPGTSD
Ga0242665_100379142	3300022724	Soil	LGMNSLEGELNRCLNDPDPLLRETARAAKQRLEQFAKA
Ga0242654_102381512	3300022726	Soil	AIGALGIKSLEDQLDRCLNESDPLLRETARAAKLRLEAPAGKS
Ga0247681_10324492	3300024310	Soil	ALEMISLQTELDKCLEHPDPLLRETARAAKLRLGAAAKP
Ga0209109_101186153	3300025160	Soil	SLESALDSCLEHPDPLLRETARHAKQKLTALPDPATA
Ga0209002_103708301	3300025289	Soil	LRSLEPEIDRCLNHPDPLLRETARQAKLRLAALAPAS
Ga0207646_102758823	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	SLEGELNRCLNDSDPLLRETARAAKLRLDALAAKA
Ga0207686_114374001	3300025934	Miscanthus Rhizosphere	YAVGALGLRSLEDHLNRCLNDSDPLLRETARAAKLRLEALVTKA
Ga0207709_103556791	3300025935	Miscanthus Rhizosphere	VGALGLRSLEDQLNRCLNDTDPLLRETARAAKLRLEALVTKA
Ga0208527_10188642	3300025990	Rice Paddy Soil	GLTSLEDQLNQCLDHPDALLRETARAAKLRLGPQSQSAGA
Ga0207702_116951061	3300026078	Corn Rhizosphere	GVFGLRSLEGQLNRLLNDSDPLLRETARASKLRLEALVTRSET
Ga0209470_12695261	3300026324	Soil	GTLGIKSLEGELNRCLNDSDPLLRETARAAKQRLEEFAAKA
Ga0257164_10031943	3300026497	Soil	KSLEGQLDGCLNESDPLLRETARAAKLRLEALAAKP
Ga0209474_104250011	3300026550	Soil	AIGTLGMKSLEAELNRCLEHPDPLLRETARTAKLRLEALAANS
Ga0209106_10738761	3300027616	Forest Soil	GIRSLEDQLDRCLEESDPLLRETARAAKLRLEALAAKS
Ga0209772_101617452	3300027768	Bog Forest Soil	IGNFGLKSLEGELNRCLNDTDPLLRETARAAKLRLEALVTKT
Ga0209180_104113662	3300027846	Vadose Zone Soil	SLEGELHRCLNDADPLLRETARAAKVRLEAAVVKSVDIGS
Ga0209590_103501761	3300027882	Vadose Zone Soil	YAIGAFGLKSLEGELNRCLNDGDPLLRETARAAKLRLEALATKA
Ga0247662_10511302	3300028293	Soil	AIGALEMISLQTELDKCLEHPDPLLRETARAAKLRLGAAAKP
Ga0137415_100204426	3300028536	Vadose Zone Soil	GSLGIRSLEDQLDRCLNESDPLLRETARAAKLRLEALAAKS
Ga0311339_106539543	3300029999	Palsa	SLEGELNRCLNDADPLLRETARAAKMRLEALVTKAVPSVK
Ga0170834_1134911741	3300031057	Forest Soil	MISLQTELDKCLEHPDPLLRETARAAKLRLGAAAKP
Ga0170824_1256920702	3300031231	Forest Soil	LGMISLQTELDKCLEHPDPLLRETARAAKLRLGAAAKP
Ga0302326_100634009	3300031525	Palsa	AIGNFGLKSLEGELNRCLNDADPLLRETARAAKMRLEALVTKAVPSVK
Ga0247727_110000341	3300031576	Biofilm	GAYAIGSLGLRSLAHELEACLVHADPLLRETARQAKLRLAAASAS
Ga0318561_101046791	3300031679	Soil	AYAIGSFGIRSLSAELEHCFEHPDPLLRETARAAKLRLAEQS
Ga0318567_102563753	3300031821	Soil	KFAIKSLEAELGKCLEHPDPLLRETARVAKLRLDAVAVDS
Ga0310916_109767331	3300031942	Soil	YAIGKFVIKSLETELGRCLQHPDTLLRETARAAKLRLQAVAADS
Ga0307470_105172311	3300032174	Hardwood Forest Soil	GAYAIGTLGMISLQTELDKCLEHPDPLLRETARAAKLRLGTEAKP
Ga0335081_123714902	3300032892	Soil	GMKSLEVELNRCLSDPDPLLRETARVAKRRLEQFAKV
Ga0335083_110348822	3300032954	Soil	GAYAIGSLGMVTLEKELDRCLDHQDPLLRETARAAKLRLAMHR

Hidden Markov Model


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