Metagenome / Metatranscriptome Family F079108

Basic Information
Family ID	F079108
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	46 residues
Representative Sequence	AEAGTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAA
Number of Associated Samples	101
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.31 %
% of genes near scaffold ends (potentially truncated)	93.10 %
% of genes from short scaffolds (< 2000 bps)	92.24 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Most Common Taxonomy
Group	Bacteria (68.966 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.828 % of family members)
Environment Ontology (ENVO)	Unclassified (22.414 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.931 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.36% β-sheet: 0.00% Coil/Unstructured: 61.64%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF02518	HATPase_c	42.24
PF02899	Phage_int_SAM_1	3.45
PF06803	DUF1232	3.45
PF13397	RbpA	2.59
PF13635	DUF4143	1.72
PF04138	GtrA	1.72
PF00732	GMC_oxred_N	1.72
PF00343	Phosphorylase	0.86
PF14226	DIOX_N	0.86
PF05239	PRC	0.86
PF12680	SnoaL_2	0.86
PF00571	CBS	0.86
PF00440	TetR_N	0.86
PF01243	Putative_PNPOx	0.86
PF07045	DUF1330	0.86
PF04978	DUF664	0.86
PF00296	Bac_luciferase	0.86
PF13560	HTH_31	0.86
PF12762	DDE_Tnp_IS1595	0.86
PF00768	Peptidase_S11	0.86
PF06197	DUF998	0.86
PF00881	Nitroreductase	0.86
PF08240	ADH_N	0.86
PF07690	MFS_1	0.86
PF02254	TrkA_N	0.86
PF00924	MS_channel	0.86
PF07885	Ion_trans_2	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	3.45
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	3.45
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	3.45
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	1.72
COG0058	Glucan phosphorylase	Carbohydrate transport and metabolism [G]	0.86
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.86
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.86
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.86
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.86
COG3371	Uncharacterized membrane protein	Function unknown [S]	0.86
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.97 %
Unclassified	root	N/A	31.03 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.97 %
Unclassified	root	N/A	31.03 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.97 %
Unclassified	root	N/A	31.03 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	64.66 %
Unclassified	root	N/A	31.03 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	63.79 %
Unclassified	root	N/A	31.03 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	51.72 %
Unclassified	root	N/A	31.03 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.86 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	22.41 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.59 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.72 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.72 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.86 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.86 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.86 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.86 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.59 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.72 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.72 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.72 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.86 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.86 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.86 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.86 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.59 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.72 %
Leifsonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia	0.86 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.86 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.86 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.86 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.86 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.59 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.72 %
unclassified Leifsonia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia → unclassified Leifsonia	0.86 %
Pseudonocardia endophytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia endophytica	0.86 %
Nocardia otitidiscaviarum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia otitidiscaviarum	0.86 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.86 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.86 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.59 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.72 %
Leifsonia sp. Root112D2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia → unclassified Leifsonia → Leifsonia sp. Root112D2	0.86 %
Pseudonocardia endophytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia endophytica	0.86 %
Nocardia otitidiscaviarum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia otitidiscaviarum	0.86 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.86 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.86 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FIHLEPW02P3JYA	Not Available	512	Open in IMG/M
3300000956\|JGI10216J12902_120221067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	619	Open in IMG/M
3300003368\|JGI26340J50214_10177890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	528	Open in IMG/M
3300005178\|Ga0066688_10513598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	771	Open in IMG/M
3300005184\|Ga0066671_10330879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	963	Open in IMG/M
3300005328\|Ga0070676_10672539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	753	Open in IMG/M
3300005337\|Ga0070682_100723414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	800	Open in IMG/M
3300005364\|Ga0070673_101686832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia otitidiscaviarum	599	Open in IMG/M
3300005434\|Ga0070709_10607625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	842	Open in IMG/M
3300005435\|Ga0070714_101444509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	672	Open in IMG/M
3300005436\|Ga0070713_100165643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1976	Open in IMG/M
3300005439\|Ga0070711_100672802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	869	Open in IMG/M
3300005439\|Ga0070711_100704304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	850	Open in IMG/M
3300005455\|Ga0070663_100138079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1858	Open in IMG/M
3300005455\|Ga0070663_100814309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	801	Open in IMG/M
3300005458\|Ga0070681_10780942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	872	Open in IMG/M
3300005468\|Ga0070707_101913135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	561	Open in IMG/M
3300005559\|Ga0066700_10845438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	612	Open in IMG/M
3300005610\|Ga0070763_10594076	Not Available	641	Open in IMG/M
3300005615\|Ga0070702_101373140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
3300005842\|Ga0068858_100301984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1527	Open in IMG/M
3300006028\|Ga0070717_10066786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2991	Open in IMG/M
3300006028\|Ga0070717_12129717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	504	Open in IMG/M
3300006173\|Ga0070716_100692786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	777	Open in IMG/M
3300006175\|Ga0070712_100445399	Not Available	1077	Open in IMG/M
3300006176\|Ga0070765_101187705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	721	Open in IMG/M
3300006755\|Ga0079222_10480047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	902	Open in IMG/M
3300006797\|Ga0066659_11263136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	616	Open in IMG/M
3300006804\|Ga0079221_11320352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	569	Open in IMG/M
3300006854\|Ga0075425_101311830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	820	Open in IMG/M
3300006914\|Ga0075436_100750894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	725	Open in IMG/M
3300006954\|Ga0079219_10045533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1853	Open in IMG/M
3300009174\|Ga0105241_10202244	Not Available	1660	Open in IMG/M
3300009174\|Ga0105241_12315292	Not Available	535	Open in IMG/M
3300009792\|Ga0126374_10498434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	877	Open in IMG/M
3300010043\|Ga0126380_10766840	Not Available	785	Open in IMG/M
3300010343\|Ga0074044_10491622	Not Available	802	Open in IMG/M
3300010375\|Ga0105239_12498443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	602	Open in IMG/M
3300010375\|Ga0105239_12601470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	590	Open in IMG/M
3300010880\|Ga0126350_12050296	Not Available	545	Open in IMG/M
3300011106\|Ga0151489_1216666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1041	Open in IMG/M
3300012096\|Ga0137389_11377236	Not Available	600	Open in IMG/M
3300012199\|Ga0137383_10510702	Not Available	880	Open in IMG/M
3300012483\|Ga0157337_1003378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	963	Open in IMG/M
3300012683\|Ga0137398_10363311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	982	Open in IMG/M
3300013100\|Ga0157373_10096143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2085	Open in IMG/M
3300013307\|Ga0157372_12410963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	604	Open in IMG/M
3300014164\|Ga0181532_10123646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1583	Open in IMG/M
3300015264\|Ga0137403_11114283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia endophytica	635	Open in IMG/M
3300016357\|Ga0182032_11458221	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300017659\|Ga0134083_10393230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	604	Open in IMG/M
3300017821\|Ga0187812_1031167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1824	Open in IMG/M
3300017821\|Ga0187812_1102425	Not Available	935	Open in IMG/M
3300017926\|Ga0187807_1138128	Not Available	776	Open in IMG/M
3300017933\|Ga0187801_10007883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia → unclassified Leifsonia → Leifsonia sp. Root112D2	3436	Open in IMG/M
3300017933\|Ga0187801_10494489	Not Available	516	Open in IMG/M
3300017955\|Ga0187817_10138387	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300017955\|Ga0187817_10795620	Not Available	604	Open in IMG/M
3300017959\|Ga0187779_10061748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2200	Open in IMG/M
3300017959\|Ga0187779_10635299	Not Available	717	Open in IMG/M
3300017972\|Ga0187781_10271867	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300017995\|Ga0187816_10544154	Not Available	523	Open in IMG/M
3300018086\|Ga0187769_10039953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3223	Open in IMG/M
3300018086\|Ga0187769_10160289	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1651	Open in IMG/M
3300018090\|Ga0187770_10377566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1111	Open in IMG/M
3300020581\|Ga0210399_10404229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1139	Open in IMG/M
3300020583\|Ga0210401_10995275	Not Available	697	Open in IMG/M
3300021088\|Ga0210404_10794292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	541	Open in IMG/M
3300021171\|Ga0210405_10883552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	680	Open in IMG/M
3300021374\|Ga0213881_10484489	Not Available	560	Open in IMG/M
3300021403\|Ga0210397_10827818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	715	Open in IMG/M
3300021475\|Ga0210392_10745637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	730	Open in IMG/M
3300021478\|Ga0210402_10478575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1156	Open in IMG/M
3300025898\|Ga0207692_10022914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2881	Open in IMG/M
3300025898\|Ga0207692_10777676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	625	Open in IMG/M
3300025903\|Ga0207680_10861547	Not Available	649	Open in IMG/M
3300025905\|Ga0207685_10283215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	814	Open in IMG/M
3300025906\|Ga0207699_10008779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5003	Open in IMG/M
3300025906\|Ga0207699_10996433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	619	Open in IMG/M
3300025912\|Ga0207707_10547529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	983	Open in IMG/M
3300025913\|Ga0207695_11613345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	529	Open in IMG/M
3300025913\|Ga0207695_11624346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	527	Open in IMG/M
3300025929\|Ga0207664_11270032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	655	Open in IMG/M
3300025931\|Ga0207644_10166673	Not Available	1717	Open in IMG/M
3300026023\|Ga0207677_10448292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1105	Open in IMG/M
3300026035\|Ga0207703_11370776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	680	Open in IMG/M
3300026314\|Ga0209268_1177667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	525	Open in IMG/M
3300026910\|Ga0207840_1023618	Not Available	607	Open in IMG/M
3300027787\|Ga0209074_10014503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2025	Open in IMG/M
3300027787\|Ga0209074_10321050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	626	Open in IMG/M
3300027857\|Ga0209166_10129294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1390	Open in IMG/M
3300027857\|Ga0209166_10390180	Not Available	724	Open in IMG/M
3300027884\|Ga0209275_10089980	All Organisms → cellular organisms → Bacteria	1553	Open in IMG/M
3300028828\|Ga0307312_10524244	Not Available	782	Open in IMG/M
3300029701\|Ga0222748_1049530	Not Available	717	Open in IMG/M
3300031723\|Ga0318493_10062766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1792	Open in IMG/M
3300031724\|Ga0318500_10666455	Not Available	529	Open in IMG/M
3300031747\|Ga0318502_10207329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1135	Open in IMG/M
3300031748\|Ga0318492_10407623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	715	Open in IMG/M
3300031751\|Ga0318494_10489004	Not Available	717	Open in IMG/M
3300031765\|Ga0318554_10177743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1211	Open in IMG/M
3300031768\|Ga0318509_10820392	Not Available	514	Open in IMG/M
3300031769\|Ga0318526_10069765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1371	Open in IMG/M
3300031782\|Ga0318552_10010708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3819	Open in IMG/M
3300031799\|Ga0318565_10322862	Not Available	750	Open in IMG/M
3300031821\|Ga0318567_10300533	Not Available	905	Open in IMG/M
3300031823\|Ga0307478_10485712	Not Available	1028	Open in IMG/M
3300031846\|Ga0318512_10277295	Not Available	831	Open in IMG/M
3300031912\|Ga0306921_10700371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1164	Open in IMG/M
3300032008\|Ga0318562_10527159	Not Available	684	Open in IMG/M
3300032010\|Ga0318569_10227805	Not Available	865	Open in IMG/M
3300032063\|Ga0318504_10184186	Not Available	971	Open in IMG/M
3300032205\|Ga0307472_100487796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1058	Open in IMG/M
3300032770\|Ga0335085_12575259	Not Available	503	Open in IMG/M
3300032783\|Ga0335079_11169305	Not Available	775	Open in IMG/M
3300032896\|Ga0335075_10404117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1451	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.76%
Host-Associated	Host-Associated	17.24%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.14%
Plants	Host-Associated → Plants	17.24%
Aquatic	Environmental → Aquatic	8.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.79%
Freshwater	Environmental → Aquatic → Freshwater	8.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.45%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.97%
Loam	Environmental → Terrestrial → Soil → Loam	20.69%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.62%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.45%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	17.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.34%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.62%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.72%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.86%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.17%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.31%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.72%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.72%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.86%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.86%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012483	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026910	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 65 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079108

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_03250430	2070309004	Green-Waste Compost	VNVSLPERDAHRLDGQQQVISESLRRLTALAEHSS
JGI10216J12902_1202210671	3300000956	Soil	SDIEIVWQLAEGGAGTSIHVQVSLPEREAHRLDGQRQAIGESLRRLAALAEAAA*
JGI26340J50214_101778901	3300003368	Bog Forest Soil	FQLAESDAGTFIHMNVSAPEREAHRLDRQHQLIEQSLRRLTALAEAAS*
Ga0066688_105135982	3300005178	Soil	GPGTAIHVQVSLPEQEAHRLDGQHQLIAESLRRLATLAESPT*
Ga0066671_103308791	3300005184	Soil	IEIVWQLAEDGPGTAISVQVSLPEQEAHRLDGQHQIMEESLRRLAALAESPT*
Ga0070676_106725392	3300005328	Miscanthus Rhizosphere	LAEAGTGTAIHVTVSLPEQEAHRLDGQHQLIEDSLHRLAALAETAA*
Ga0070682_1007234142	3300005337	Corn Rhizosphere	CQVSDIELVWQLAEAGTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAA*
Ga0070673_1016868321	3300005364	Switchgrass Rhizosphere	WQLAEAGAGTAIHLNVTAPESQARRLDRQHQLIEQSLRRLTALAEAAS*
Ga0070709_106076252	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAA*
Ga0070714_1014445092	3300005435	Agricultural Soil	CGAGTSIHVQVSLPTREAHRLDGQHELIEESLRRLAALAEAAA*
Ga0070713_1001656431	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	TAIHLNVTAPESQARRLDRQHQLIEQSLRRLTALAEAAS*
Ga0070711_1006728021	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	AEAGTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAA*
Ga0070711_1007043042	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	SCQVSDIEIVWQLAEDGPGTAIHVQVSLPEQEAHRLDGQHQIMEESLRRLAALAESPT*
Ga0070663_1001380791	3300005455	Corn Rhizosphere	GTAIQVTVSLPEREAHRLDGQRQAIGESLRRLAALAEAAS*
Ga0070663_1008143091	3300005455	Corn Rhizosphere	EAGTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAA*
Ga0070681_107809422	3300005458	Corn Rhizosphere	SDIEIVWQLAEGGAGTAIHVHVSLPEHEAHRLDGQRQAIGESLRRLAALAEAAS*
Ga0070707_1019131353	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LAEAGTGTAIHVTVSLPEREARRLDGQHQLIEESLGRLAALAEAAA*
Ga0066700_108454382	3300005559	Soil	GPGTAIHVQVSLPEQEAHRLDGQHQIMEESLRRLAALAEAAA*
Ga0070763_105940761	3300005610	Soil	IDVVWQLAEAGTGTSITVNVSLPAREAHRLDGQHQAIAESLRRLTALAEAAS*
Ga0070702_1013731402	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	QLAEAGTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAA*
Ga0068858_1003019842	3300005842	Switchgrass Rhizosphere	GTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEATA*
Ga0070717_100667861	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	IHLNVTAPESQARRLDRQHQLIEQSLRRLTALAEAAS*
Ga0070717_121297172	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	CQVSDIELVWQLAEAGTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAETAA*
Ga0070716_1006927861	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	GTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAA*
Ga0070712_1004453992	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LNVTAPESQARRLDRQHQLIEQSLRRLTALAEAAS*
Ga0070765_1011877051	3300006176	Soil	EVVWQLAEAGPGTSINVNVSLPEREARRLDGQRQVISESLCRLTALAEAAS*
Ga0079222_104800472	3300006755	Agricultural Soil	IELVWQLAEAGTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAA*
Ga0066659_112631361	3300006797	Soil	QLAECGAGTSIHVQVSLPTREAHRLDGQHELIEESLRRLAALAEAAA*
Ga0079221_113203521	3300006804	Agricultural Soil	LGEAGAGTSINVNVILPEREAHRLDGQHQVISQSLRRLTALAEASS*
Ga0075425_1013118302	3300006854	Populus Rhizosphere	GGPGTAIQVTVSLPEREAHRLDGQHQAIEESLRRLAALAEAAA*
Ga0075436_1007508942	3300006914	Populus Rhizosphere	SCQVSDIDVVWQLAEGGPGTAIQVTVSLPEREAHRLDGQHQAIEESLRRLAALAEAAA*
Ga0079219_100455333	3300006954	Agricultural Soil	VWQLAEGGPGTAIQVTVSLPEREAHRLDGQHQAIEESLRRLAALAEAAG*
Ga0105241_102022441	3300009174	Corn Rhizosphere	CQVSDIDVVWQLAEGGPGTAIQVTVSLPEREAHRLDGQRQAIGESLRRLAALAEAAS*
Ga0105241_123152921	3300009174	Corn Rhizosphere	IPESEARRLDGQRDVISSSLRRLAALAEAGSAPV*
Ga0126374_104984342	3300009792	Tropical Forest Soil	GGQGTAIHVTVSLPEHEAHRLDGQHQAIEESLRRLTALAEAAA*
Ga0126380_107668401	3300010043	Tropical Forest Soil	VNVTLPGREAHRLDGQHQVISESLRRLTALAEAAS*
Ga0074044_104916222	3300010343	Bog Forest Soil	AEAGTGTSINLNVTLPERQAHRLDGQHQVIEESLRRLTTLAEAAS*
Ga0105239_124984432	3300010375	Corn Rhizosphere	SCQVSDIELVWQLAEAGTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAA*
Ga0105239_126014701	3300010375	Corn Rhizosphere	TVSLPEREARRLDGQHQLIEESLHRLAALAEAAA*
Ga0126350_120502961	3300010880	Boreal Forest Soil	NVSLPEREARRLDGQRQVISESLCRLTALAEAAS*
Ga0151489_12166661	3300011106	Soil	WQLAEAGTGTVIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAA*
Ga0137389_113772362	3300012096	Vadose Zone Soil	VNVSLPEREAQRLDGQHHVIREALRRLAALAEAAS*
Ga0137383_105107021	3300012199	Vadose Zone Soil	TAIHVQVSLPEQEAHRLDGQHQLIAESLRRLAALAESPT*
Ga0157337_10033782	3300012483	Arabidopsis Rhizosphere	EDGPGTAIHVQVSLPEQEAHRLDGQHQLIGESLRRLAALAEAA*
Ga0137398_103633112	3300012683	Vadose Zone Soil	AEDGPGTAIGVQVSLPEREAHRLDGQHQIMEESLRRLAALAEAAV*
Ga0157373_100961433	3300013100	Corn Rhizosphere	LAEAGTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAT*
Ga0157372_124109631	3300013307	Corn Rhizosphere	GTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAETAA*
Ga0181532_101236461	3300014164	Bog	IISCQVFAIDMVWQLAEIGAGTSIHVNVTAPESQAHRLDGQHQLIEESLRRLSALAEAAS
Ga0137403_111142832	3300015264	Vadose Zone Soil	MPQKLRVDQVNDRVTVSCQVSDIDVVWQLAERGPGTAIQVTVSLPEQEAHRLDGQHQVIEASLRRLSALAETAA*
Ga0182032_114582212	3300016357	Soil	WQLAEAGDGTSIHVAASLPESEAHRLDGQHQVIEESLRRLTALAEAAS
Ga0134083_103932302	3300017659	Grasslands Soil	VWQLAESGAGTSIHVQVSLPEHEAHRLDGQRQLIGESLRRLAALAEAAA
Ga0187812_10311671	3300017821	Freshwater Sediment	LAEAGTGTSINVNVSLPEREAHRLDGQQNVISESLRRVTALAEHSS
Ga0187812_11024251	3300017821	Freshwater Sediment	LAEAGTGTSINVNVSLPEREAHRLDGQQNVISESLRRLTALAEHSS
Ga0187807_11381282	3300017926	Freshwater Sediment	VIISCQVFAIEMVWQLAEAGAGTSIHVNVTGPESAAHRLDGQHQLIEESLRRLTALAEAA
Ga0187801_100078831	3300017933	Freshwater Sediment	AEAGTGTSIHVNVSLPQHEARRLDGQQQVIQESLRRLTTLAEAAS
Ga0187801_104944891	3300017933	Freshwater Sediment	INVNVSLPEREAHRLDGQQNVISESLRRLTALAEHSS
Ga0187817_101383871	3300017955	Freshwater Sediment	IVWQLAEAGAGTSINVNVSVPEREARRLDDQHRVISESLRRLTALAEAAS
Ga0187817_107956201	3300017955	Freshwater Sediment	LAEAGMGTSINVNVSLPEHEAHRLDGQHQAIQESLRRLTALAEAAS
Ga0187779_100617481	3300017959	Tropical Peatland	TGTSIHVNVSLPQREAHRLDGQQQVISESLRRLTALAEAAT
Ga0187779_106352992	3300017959	Tropical Peatland	AEAGTGTSIHVNVRLPQREAHRLDGQHQVISESLRRLTALAEAAS
Ga0187781_102718671	3300017972	Tropical Peatland	TSIHLNVTLPESEAHRLGRQHRLIEESLRRLTALAEAAS
Ga0187816_105441542	3300017995	Freshwater Sediment	WQLAEIDAGTSIHVNLSLPEREAHLLDYQHEVIEESLRRLTALAEAAS
Ga0187769_100399534	3300018086	Tropical Peatland	VVWQLAETGAGTSIHVNVPAPEPEAHLIDRQHRLIEESLRRLAALAEAAS
Ga0187769_101602894	3300018086	Tropical Peatland	WQLAESGGGTFIRVNVSLPQREAHRLDGQQQVIQESLRRLTALAEAAS
Ga0187770_103775662	3300018090	Tropical Peatland	VWQLAETGAGTSIHVNVTAPESEAHLLDRQHRLIEESLRRLAALAEAAS
Ga0210399_104042291	3300020581	Soil	SDIEIVWQLAEDGPGTAIHVQVSLPVQEAHRLDGQHQAIAESLRRLAALAEAPP
Ga0210401_109952752	3300020583	Soil	QVSDIDVVWQLAEAGTGTSITVNVSLPAREAHRLDGQHQAIAESLHRLTALAEAAS
Ga0210404_107942922	3300021088	Soil	AEDGPGTAISVQVSLPEQEAHRLDGQHQIMEESLRRLAALAESPT
Ga0210405_108835522	3300021171	Soil	VSVSLPEQEAHRLDRQRQVIGESLRRLTALAEAPP
Ga0213881_104844891	3300021374	Exposed Rock	IQVKVSLPDREAHRLDGQHQVMEESLSHLTALAEAGS
Ga0210397_108278182	3300021403	Soil	LAEDGPGTAIHVQVSLPEREARRLDGQHQLIEESLRRLATLAESPT
Ga0210392_107456371	3300021475	Soil	GGTSIHVTVSLPEPEAHRLDRQRQVIGESLRRLTTLAEAAS
Ga0210402_104785752	3300021478	Soil	GGTSIHVSVSLPEQEAHRLDRQRQVIGESLRRLTALAEAPP
Ga0207692_100229144	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	AGTAIHLNVTAPESQARRLDRQHQLIEQSLRRLTALAEAAS
Ga0207692_107776761	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	IQVTVSLPEREARRLDGQHRIMQESLRRLTALAEAA
Ga0207680_108615472	3300025903	Switchgrass Rhizosphere	GGPGTAIQVTVSLPEREAHRLDGQRQAIGESLRRLAALAEAAAS
Ga0207685_102832152	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	NVNVILPEREAHRLDGQHQVISESLRRLTALAEAAS
Ga0207699_100087791	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	HLNVTAPESQARRLDRQHQLIEQSLRRLTALAEAAS
Ga0207699_109964331	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	CTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAA
Ga0207707_105475291	3300025912	Corn Rhizosphere	AGTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAT
Ga0207695_116133451	3300025913	Corn Rhizosphere	ELVWQLAEAGTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAA
Ga0207695_116243462	3300025913	Corn Rhizosphere	EAGTGTAIHVTVSLPEQEAHRLDGQHQLIEDSLHRLAALAETAA
Ga0207664_112700323	3300025929	Agricultural Soil	LAEAGAGTSIHVTISLPEREAHRLDGQRRVIEESLHRLAALAEAAS
Ga0207644_101666733	3300025931	Switchgrass Rhizosphere	TAIQVTVSLPEREAHRLDGQRQAIGESLRRLAALAEAAAS
Ga0207677_104482922	3300026023	Miscanthus Rhizosphere	TGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAA
Ga0207703_113707761	3300026035	Switchgrass Rhizosphere	EAGTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEATA
Ga0209268_11776672	3300026314	Soil	GTAIGVQVSLPEQEAHRLDGQQQVMQESLRRLAALAEAAA
Ga0207840_10236181	3300026910	Tropical Forest Soil	SIHVNVRLPQREAHRLDGQQQVIQESLRRLTALAEAAS
Ga0209074_100145033	3300027787	Agricultural Soil	VVWQLAEGGPGTAIQVIVSLPEREAHRLDGQHQAIEESLRRLAALAEAAA
Ga0209074_103210501	3300027787	Agricultural Soil	IGVQVSLPEHEAHRLDGQRQAIGESLRRLAALAESAA
Ga0209166_101292943	3300027857	Surface Soil	QLAEAGPGTSINVNVSLPEREARRLDGQRQVISESLCRLTALAEAAS
Ga0209166_103901801	3300027857	Surface Soil	LAEAGMGTSINVNVSLPEREAHRFDGQHQAIEESLRRLTALAEAAS
Ga0209275_100899803	3300027884	Soil	DQANERVTVSCQVSDIEFTWQLAELGAGTSIHVTASLPESEAHRLDGRHQVIEESLRRLAALAEAAA
Ga0307312_105242441	3300028828	Soil	AIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAS
Ga0222748_10495301	3300029701	Soil	IVWQLAEAGTSTSINLNVTLPERQAHRLDGQHQVIEESLRRLTTLAEAAS
Ga0318493_100627661	3300031723	Soil	WQLAESGTGTSIQVNVSLPEREAHRLDGQHQVIEESLRRLSALAEAAS
Ga0318500_106664551	3300031724	Soil	QVSYIDVVWQLAEAGTGTSIQVNVSLPQREAHRLDGQQQVISESLRRLTALAEAAS
Ga0318502_102073291	3300031747	Soil	VIISCQVFAIEMVWQLAEAGAGTSIHLNVTAPESEAPRLDRQHQLIEESLRRLTALAEAA
Ga0318492_104076231	3300031748	Soil	TGTSIHVNVSLPQHEAHRLDGQQQVISESLRRLTALAEAAS
Ga0318494_104890042	3300031751	Soil	VIISCQVFAIEMVWQLAEAGAGTSIHVSFTAPESEAHKVDSQHQLFEESLRRLTALAEAA
Ga0318554_101777433	3300031765	Soil	VNVSLPEREAHRLDGQHQVIEESLRRLSALAEAAS
Ga0318509_108203922	3300031768	Soil	QANERVTVSCQVSDIEIVWQLAEAGTGTSIHVNVSLPEHEAHRLDGQQQVISESLRRLTALAEHSS
Ga0318526_100697652	3300031769	Soil	VTVSPPEREAHRLDGRHQVIEESLRRLAALAEAAA
Ga0318552_100107083	3300031782	Soil	GTGTSIQVNVSLPQREAHRLDGQQQVISESLRRLTALAEAAS
Ga0318565_103228621	3300031799	Soil	QVNVSLPEREAHRLDGQHQVIEESLRRLSALAEAAS
Ga0318567_103005331	3300031821	Soil	HVSFTAPESEAHRVDGQHKLFEESLRRLTALAEAAS
Ga0307478_104857122	3300031823	Hardwood Forest Soil	ITVNVSLPAREAHRLDGQHQAITESLHRLTALAEAAS
Ga0318512_102772951	3300031846	Soil	VSAIEMVWQLAEAGAGTSIHVSFTAPESEAHRVDGQHKLFEESLRRLTALAEAAS
Ga0306921_107003711	3300031912	Soil	HVNVSLPQHEAHRLDGQQQVISESLRRLTALAEAAS
Ga0318562_105271591	3300032008	Soil	PQTLRVDQADGRVIMSCQVFAIDVVWQLAEAGAGTAIHVNVTLPESEAHRLDGQHQLIEESPRRLTALAEAAS
Ga0318569_102278051	3300032010	Soil	IQVNVSLPQREAHRLDGQQQVISESLRRLTALAEAAS
Ga0318504_101841861	3300032063	Soil	VSDIDVVWQLAEAGTGTSIHVNVSLPQHEAHRLDGQQQVISESLRRLTALAEAAS
Ga0307472_1004877962	3300032205	Hardwood Forest Soil	LAEAGTGTAIHVTVSLPEREARRLDGQHQLIEESLHRLAALAEAAA
Ga0335085_125752591	3300032770	Soil	AGAGTSIHVNVTGPESRAHRLDDLHQLIGESLRRLTALAEAAS
Ga0335079_111693052	3300032783	Soil	LAESGTGTAIQVTVSLPDREAHRLDDQHQIIEESLRHLTALAEAAS
Ga0335075_104041172	3300032896	Soil	GTAIHVHVSLPEREAHRLDGQHQAIEESLRRLTALAEAAA

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign