Metagenome / Metatranscriptome Family F079044

Basic Information
Family ID	F079044
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	36 residues
Representative Sequence	MRRRHIARKAVKTAIIAKSAQHLARRAEKHLGKHQ
Number of Associated Samples	80
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.66 %
% of genes near scaffold ends (potentially truncated)	12.07 %
% of genes from short scaffolds (< 2000 bps)	76.72 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Most Common Taxonomy
Group	Bacteria (63.793 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (21.552 % of family members)
Environment Ontology (ENVO)	Unclassified (31.897 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.069 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.79% β-sheet: 0.00% Coil/Unstructured: 49.21%
Feature Viewer

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Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01027	Bax1-I	15.52
PF01297	ZnuA	3.45
PF00196	GerE	3.45
PF13520	AA_permease_2	3.45
PF04972	BON	2.59
PF00005	ABC_tran	1.72
PF00924	MS_channel	1.72
PF07167	PhaC_N	0.86
PF04199	Cyclase	0.86
PF12802	MarR_2	0.86
PF00903	Glyoxalase	0.86
PF03729	DUF308	0.86
PF01566	Nramp	0.86
PF13006	Nterm_IS4	0.86
PF11239	DUF3040	0.86
PF01638	HxlR	0.86
PF03706	LPG_synthase_TM	0.86
PF07676	PD40	0.86
PF13424	TPR_12	0.86
PF12681	Glyoxalase_2	0.86
PF09363	XFP_C	0.86
PF02467	Whib	0.86
PF13185	GAF_2	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	1.72
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	1.72
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.86
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.86
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.86
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.86
COG3243	Poly-beta-hydroxybutyrate synthase	Lipid transport and metabolism [I]	0.86
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.66 %
Unclassified	root	N/A	35.34 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.66 %
Unclassified	root	N/A	35.34 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.79 %
Unclassified	root	N/A	35.34 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.86 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	62.07 %
Unclassified	root	N/A	35.34 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.86 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	62.07 %
Unclassified	root	N/A	35.34 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.86 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	29.31 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.86 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	9.48 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.72 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.72 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.86 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.86 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.86 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.86 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.48 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.72 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.86 %
Ilumatobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae	0.86 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.86 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.86 %
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	0.86 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.86 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.48 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	1.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.72 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.86 %
Ilumatobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	0.86 %
unclassified Acidisphaera	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera	0.86 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.86 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.86 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.86 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.48 %
Micromonospora lupini	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora lupini	1.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.72 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.86 %
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	0.86 %
unclassified Actinomadura	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura	0.86 %
unclassified Amycolatopsis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis	0.86 %
Ilumatobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	0.86 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.86 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.48 %
Micromonospora lupini str. Lupac 08	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora lupini → Micromonospora lupini str. Lupac 08	1.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.72 %
Amycolatopsis sp. FDAARGOS 1241	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	0.86 %
Actinomadura sp. CNU-125	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. CNU-125	0.86 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.86 %
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	0.86 %
Ilumatobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	0.86 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.86 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10313971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	975	Open in IMG/M
3300001867\|JGI12627J18819_10104899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1166	Open in IMG/M
3300005538\|Ga0070731_10074059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2259	Open in IMG/M
3300005563\|Ga0068855_100552341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1246	Open in IMG/M
3300005563\|Ga0068855_100604097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1183	Open in IMG/M
3300005610\|Ga0070763_10888517	Not Available	530	Open in IMG/M
3300005616\|Ga0068852_102394094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora lupini → Micromonospora lupini str. Lupac 08	549	Open in IMG/M
3300005842\|Ga0068858_101265406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora lupini → Micromonospora lupini str. Lupac 08	726	Open in IMG/M
3300006028\|Ga0070717_10386521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1255	Open in IMG/M
3300006028\|Ga0070717_10800230	Not Available	857	Open in IMG/M
3300006052\|Ga0075029_101143694	Not Available	542	Open in IMG/M
3300006102\|Ga0075015_100267699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	931	Open in IMG/M
3300006162\|Ga0075030_101570824	Not Available	515	Open in IMG/M
3300006175\|Ga0070712_100027007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3829	Open in IMG/M
3300006804\|Ga0079221_11791715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	502	Open in IMG/M
3300009098\|Ga0105245_10241878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1750	Open in IMG/M
3300009522\|Ga0116218_1053293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1834	Open in IMG/M
3300009523\|Ga0116221_1549270	Not Available	507	Open in IMG/M
3300009525\|Ga0116220_10141096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1032	Open in IMG/M
3300009698\|Ga0116216_10684574	Not Available	616	Open in IMG/M
3300009700\|Ga0116217_10083839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2208	Open in IMG/M
3300009764\|Ga0116134_1144357	Not Available	842	Open in IMG/M
3300010339\|Ga0074046_10002871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14676	Open in IMG/M
3300010339\|Ga0074046_10507643	Not Available	719	Open in IMG/M
3300010339\|Ga0074046_10661901	Not Available	615	Open in IMG/M
3300010339\|Ga0074046_10812329	Not Available	546	Open in IMG/M
3300010341\|Ga0074045_10090282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2131	Open in IMG/M
3300010341\|Ga0074045_10394527	Not Available	898	Open in IMG/M
3300010379\|Ga0136449_102080619	Not Available	834	Open in IMG/M
3300010396\|Ga0134126_10480850	Not Available	1434	Open in IMG/M
3300010867\|Ga0126347_1051991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1315	Open in IMG/M
3300010869\|Ga0126359_1708718	Not Available	843	Open in IMG/M
3300010876\|Ga0126361_10226725	Not Available	613	Open in IMG/M
3300010877\|Ga0126356_10044022	Not Available	742	Open in IMG/M
3300012201\|Ga0137365_10898502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	646	Open in IMG/M
3300012210\|Ga0137378_10567662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1044	Open in IMG/M
3300012357\|Ga0137384_10755334	Not Available	788	Open in IMG/M
3300012359\|Ga0137385_11236843	Not Available	609	Open in IMG/M
3300012360\|Ga0137375_10010918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10749	Open in IMG/M
3300012923\|Ga0137359_10363136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1287	Open in IMG/M
3300012957\|Ga0164303_11215857	Not Available	552	Open in IMG/M
3300017821\|Ga0187812_1009598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3352	Open in IMG/M
3300017821\|Ga0187812_1012200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2984	Open in IMG/M
3300017821\|Ga0187812_1030991	Not Available	1829	Open in IMG/M
3300017924\|Ga0187820_1007458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2582	Open in IMG/M
3300017924\|Ga0187820_1176996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	655	Open in IMG/M
3300017926\|Ga0187807_1079604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1024	Open in IMG/M
3300017928\|Ga0187806_1036005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1477	Open in IMG/M
3300017932\|Ga0187814_10024878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2239	Open in IMG/M
3300017933\|Ga0187801_10159496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	882	Open in IMG/M
3300017934\|Ga0187803_10266518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	680	Open in IMG/M
3300017942\|Ga0187808_10129783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1105	Open in IMG/M
3300017942\|Ga0187808_10422979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	611	Open in IMG/M
3300017942\|Ga0187808_10490167	Not Available	569	Open in IMG/M
3300017943\|Ga0187819_10825653	Not Available	520	Open in IMG/M
3300017948\|Ga0187847_10406040	Not Available	749	Open in IMG/M
3300017959\|Ga0187779_10527129	Not Available	784	Open in IMG/M
3300017972\|Ga0187781_10096055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2054	Open in IMG/M
3300017975\|Ga0187782_10120665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	1938	Open in IMG/M
3300017994\|Ga0187822_10155958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	736	Open in IMG/M
3300018046\|Ga0187851_10085800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1978	Open in IMG/M
3300018085\|Ga0187772_10389167	Not Available	969	Open in IMG/M
3300021405\|Ga0210387_11112627	Not Available	689	Open in IMG/M
3300021439\|Ga0213879_10200214	Not Available	594	Open in IMG/M
3300021861\|Ga0213853_11109712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	579	Open in IMG/M
3300025898\|Ga0207692_10263768	Not Available	1036	Open in IMG/M
3300025910\|Ga0207684_10037287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4125	Open in IMG/M
3300025916\|Ga0207663_10323740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. CNU-125	1159	Open in IMG/M
3300025916\|Ga0207663_10421715	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300027696\|Ga0208696_1061447	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1294	Open in IMG/M
3300027783\|Ga0209448_10186410	Not Available	689	Open in IMG/M
3300027812\|Ga0209656_10000318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	32511	Open in IMG/M
3300027812\|Ga0209656_10048703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2407	Open in IMG/M
3300027812\|Ga0209656_10060739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2092	Open in IMG/M
3300027812\|Ga0209656_10103449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1492	Open in IMG/M
3300027812\|Ga0209656_10130816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1281	Open in IMG/M
3300027812\|Ga0209656_10522730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300027824\|Ga0209040_10353805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	696	Open in IMG/M
3300027825\|Ga0209039_10310789	Not Available	619	Open in IMG/M
3300027911\|Ga0209698_10632412	Not Available	820	Open in IMG/M
3300028381\|Ga0268264_11802291	Not Available	622	Open in IMG/M
3300028800\|Ga0265338_10204214	Not Available	1488	Open in IMG/M
3300030706\|Ga0310039_10163994	Not Available	892	Open in IMG/M
3300031234\|Ga0302325_10228692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3141	Open in IMG/M
3300031708\|Ga0310686_105305316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5558	Open in IMG/M
3300031708\|Ga0310686_106238409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	900	Open in IMG/M
3300031708\|Ga0310686_117306736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1279	Open in IMG/M
3300031942\|Ga0310916_10033265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3806	Open in IMG/M
3300031962\|Ga0307479_10024316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5738	Open in IMG/M
3300032160\|Ga0311301_12870571	Not Available	523	Open in IMG/M
3300032180\|Ga0307471_101683125	Not Available	789	Open in IMG/M
3300032770\|Ga0335085_10035483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6889	Open in IMG/M
3300032770\|Ga0335085_10122996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3307	Open in IMG/M
3300032770\|Ga0335085_10309948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1866	Open in IMG/M
3300032770\|Ga0335085_10313028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1855	Open in IMG/M
3300032770\|Ga0335085_10729657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1098	Open in IMG/M
3300032770\|Ga0335085_10885737	Not Available	974	Open in IMG/M
3300032770\|Ga0335085_11114798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	844	Open in IMG/M
3300032783\|Ga0335079_10339802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1631	Open in IMG/M
3300032783\|Ga0335079_10557595	Not Available	1214	Open in IMG/M
3300032783\|Ga0335079_11901474	Not Available	576	Open in IMG/M
3300032783\|Ga0335079_12222796	Not Available	523	Open in IMG/M
3300032828\|Ga0335080_11200721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	762	Open in IMG/M
3300032828\|Ga0335080_11517127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	662	Open in IMG/M
3300032829\|Ga0335070_10140457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2470	Open in IMG/M
3300032895\|Ga0335074_10051075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5691	Open in IMG/M
3300032895\|Ga0335074_10195669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2474	Open in IMG/M
3300032895\|Ga0335074_10252557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	2073	Open in IMG/M
3300032895\|Ga0335074_10366100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1590	Open in IMG/M
3300032898\|Ga0335072_10731186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	962	Open in IMG/M
3300032898\|Ga0335072_11319300	Not Available	630	Open in IMG/M
3300032954\|Ga0335083_10660381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	854	Open in IMG/M
3300033134\|Ga0335073_10038786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6467	Open in IMG/M
3300033134\|Ga0335073_10071162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	4573	Open in IMG/M
3300033134\|Ga0335073_10288965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1974	Open in IMG/M
3300033134\|Ga0335073_10538570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1322	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.97%
Host-Associated	Host-Associated	6.03%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.38%
Aquatic	Environmental → Aquatic	27.59%
Plants	Host-Associated → Plants	6.03%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.52%
Freshwater	Environmental → Aquatic → Freshwater	24.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.31%
Sediment	Environmental → Aquatic → Sediment	3.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.72%
Peat	Environmental → Terrestrial → Peat	0.86%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	30.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.72%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	23.28%
Loam	Environmental → Terrestrial → Soil → Loam	8.62%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.45%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	30.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.41%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	12.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.59%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.86%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	21.55%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	12.93%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	7.76%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.03%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.17%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	5.17%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.45%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.45%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	3.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.59%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.72%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.86%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.86%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.86%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010869	Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079044

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_103139711	3300001593	Forest Soil	MRRRRIARQAVKTAIIAKAAHRLGHRAAKHLTKH*
JGI12627J18819_101048991	3300001867	Forest Soil	VSTMRRRHIARKAVKTAIIAKTAQHLAHRVERRQSKRK*
Ga0070731_100740592	3300005538	Surface Soil	MRRRRIARKAVKTAIIAKAAQRLGRRAVKHLVKH*
Ga0068855_1005523411	3300005563	Corn Rhizosphere	MRRRRIARKAVKTAIIAKAAHRLGRRAAKHLTKH*
Ga0068855_1006040972	3300005563	Corn Rhizosphere	MRRRRIARKAVKTAIIAKAAHRLGRRAVKHLAKH*
Ga0070763_108885172	3300005610	Soil	MKRRPVIRKAVKTALITKAAERLGRRAVKQLKKH*
Ga0068852_1023940941	3300005616	Corn Rhizosphere	MRRRRIALKVVKTAIIAKAAHRLGRRAVKDLAKH*
Ga0068858_1012654062	3300005842	Switchgrass Rhizosphere	MRRRRIARKAVKTAIIAKAAHRLGRRAAKHLAKH*
Ga0070717_103865212	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRRRRIARKAVKTAIIAKSARHLARRAEKHLRKHQ*
Ga0070717_108002302	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	RRRRIARKAVKTAIIAKSARHLARRAEKHLRKHQ*
Ga0075029_1011436942	3300006052	Watersheds	MRRRNIARKAVKTAIIAKTAQRLAHRAEKHLGKHK*
Ga0075015_1002676992	3300006102	Watersheds	MRRRHIARKAVKTAIIAKSAQHLARRAEKHLHKHQ*
Ga0075030_1015708242	3300006162	Watersheds	MRRRNIARKAVKTAIIAKSAQHLARRAEKHLHKHQ*
Ga0070712_1000270071	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRRRHIARKAIKTAIIAKSARHLARRAERHLGKHQ*
Ga0079221_117917152	3300006804	Agricultural Soil	MRRRRIARKAVKAAIIAKSARHLARRAEKHLRKHQ*
Ga0105245_102418782	3300009098	Miscanthus Rhizosphere	MRRRRIARKAVKTAIIAKAAHRLGRRAVKDLAKH*
Ga0116218_10532933	3300009522	Peatlands Soil	MRRRHIARKAVKTAIIAKSAQRLAHRAEKHLGKHK*
Ga0116221_15492702	3300009523	Peatlands Soil	MRRRHIARKAVKTAIIAKTAQRLAHRAEKHLGKHK*
Ga0116220_101410963	3300009525	Peatlands Soil	MRRRHIARKAVKTAIIAKSAQRLGRRAEKHLRKHQ*
Ga0116216_106845742	3300009698	Peatlands Soil	MRRRHIARKAVKTAIIAKSAQRLGRRAEKHLGKHH*
Ga0116217_100838392	3300009700	Peatlands Soil	MRRRNIARKAVKTAIIAKSAQRLAHRAEKHLGKHK*
Ga0116134_11443572	3300009764	Peatland	MRRRRIARKAVKTAIIAKAAQRLGRRAVKHLPKH*
Ga0074046_100028715	3300010339	Bog Forest Soil	MRRRQIARKAIKTGIIVKSAQHLARRAERHLSKHK*
Ga0074046_105076432	3300010339	Bog Forest Soil	MRRRRIARKAVKTAIIAKSAQHLARRAEKHLHKHQ*
Ga0074046_106619012	3300010339	Bog Forest Soil	MQRRHIARKAIKTGIIVKSVQHLARRAERHLGKHQ*
Ga0074046_108123292	3300010339	Bog Forest Soil	MRRRHIARKAIKTGIIVKSAQHLARRAEKHLHKHQ*
Ga0074045_100902823	3300010341	Bog Forest Soil	MRRRRIVRRAVKTAIIAKSAQRLGRRVEKHLGKHH*
Ga0074045_103945272	3300010341	Bog Forest Soil	MRRRHIARKAVKTAIIVKAAQRLGRRAEKHLSRH*
Ga0136449_1020806192	3300010379	Peatlands Soil	MRQRHIARKAVKTAIIVKAPQRLGRRAEKHRGRH*
Ga0134126_104808503	3300010396	Terrestrial Soil	MRRRPIVRKAVKTALIAKAAQRLGRRAEQHLRKH*
Ga0126347_10519912	3300010867	Boreal Forest Soil	MRRRRIARKAVKTAIIAKAAHRLGRRAVKHLTKN*
Ga0126359_17087181	3300010869	Boreal Forest Soil	MRRRRIARKAVKTAIIAKAARRLGSRAVKHMTKH*
Ga0126361_102267253	3300010876	Boreal Forest Soil	MRRRRIARKAVKTAIIAKAAQRLGRRAVKHLSKH*
Ga0126356_100440221	3300010877	Boreal Forest Soil	MRRRPIIRKAVKSAIIVKAAKHLATRTEKHLSKKH
Ga0137365_108985022	3300012201	Vadose Zone Soil	MRRRHIARKAVKTAIIAKTARHLAHRVERRQSKRK*
Ga0137378_105676624	3300012210	Vadose Zone Soil	MRRRRIARKAVKTAIIAKAARHLARRAEKHLGKHQ*
Ga0137384_107553342	3300012357	Vadose Zone Soil	MRRRPIIRKAVKTALIAKAALRLGRRAEQHLKKH*
Ga0137385_112368432	3300012359	Vadose Zone Soil	MRRRRIARTAVKTAIIAKAARHLARRAEKHLGKHQ*
Ga0137375_100109183	3300012360	Vadose Zone Soil	MRRRPIIRKAVKTALIAKAAQRLGRRAEEHLKRH*
Ga0137359_103631363	3300012923	Vadose Zone Soil	MMRRRPIIRKAVKTALIAKAALRLGRRAEQHLKKH*
Ga0164303_112158571	3300012957	Soil	QRRRRIARKAIKTAIIAKSARHLARRAEKHLRKHQ*
Ga0187812_10095981	3300017821	Freshwater Sediment	MRRRRILRKAVKTALIAKSARRLGQRAEKHLHKNR
Ga0187812_10122004	3300017821	Freshwater Sediment	MRRRRIARKAIKTAIIAKSAQHLARRVEKHLSKHQ
Ga0187812_10309913	3300017821	Freshwater Sediment	MRRRTISRKAVNTALIVKAAQRLGHRAEKHLRKHSPHQAR
Ga0187820_10074583	3300017924	Freshwater Sediment	MRRRRIARRAVKTAIIAKSAQHLARRAEKHLGKHQ
Ga0187820_11769962	3300017924	Freshwater Sediment	MRRRNIARKAVKTAIIAKTAQRLAHRAEKHLHKHQ
Ga0187807_10796042	3300017926	Freshwater Sediment	MRRRRIARKAVKTAIIVKSARHLARRAEKHLAKHV
Ga0187806_10360052	3300017928	Freshwater Sediment	MRRRTISRKAVNTALIVKAAQRLGRRAEKHLRKHSPHQAR
Ga0187814_100248781	3300017932	Freshwater Sediment	ETASDRKGTVMRRRAIPRKAVNTALIVKAAQRLGRRAEKHLRKHSPHQAR
Ga0187801_101594961	3300017933	Freshwater Sediment	TSTMRRRHIARKAVKTAIIAKSAQHLARRVEKHLSKHQ
Ga0187803_102665182	3300017934	Freshwater Sediment	MRRRRIARRAVKTAIIAKSAQHLARRVENHLSKNQ
Ga0187808_101297832	3300017942	Freshwater Sediment	MRRRHIARKAIKTAIIAKSAQHLARRVEKHLSKHQ
Ga0187808_104229792	3300017942	Freshwater Sediment	MRRRHIARKAVKTAIIAKSAQHLARRAQKHLGKHH
Ga0187808_104901672	3300017942	Freshwater Sediment	MRRRTITREAVNTALIVKAAQRLGRRAEKHLRKHSPHQAR
Ga0187819_108256532	3300017943	Freshwater Sediment	MRRRAIPRKAVNTALIVKAAQRLGRRAEKHLRKHSPHQAR
Ga0187847_104060401	3300017948	Peatland	MRRRHIARKAVKTAIIAKSAQHLAHRAAKHLGKQR
Ga0187779_105271292	3300017959	Tropical Peatland	MRRRTITREAVNTALIVKAAQRLGRRAEKHLRKHSPQQAR
Ga0187781_100960552	3300017972	Tropical Peatland	MRRRTIARKAVNTALIVKAAQRLGRRAEQHLRKHSPRQAR
Ga0187782_101206651	3300017975	Tropical Peatland	MHRHIIARKAVNTALIVKAAQRLGRRAEKHLRKHPPHQARTPE
Ga0187822_101559582	3300017994	Freshwater Sediment	MRRRHIARKAIKTAIIAKSAQHLARRAEKHLSKHQ
Ga0187851_100858003	3300018046	Peatland	MRRRHIARKAVKTALIAKSAQHLAHRFTKHLGKRQ
Ga0187772_103891673	3300018085	Tropical Peatland	MRRRPIARKAVNTALIVQAAQRLGRRAEKHLRKRSPDQAG
Ga0210387_111126271	3300021405	Soil	MRRRPIIRKAVKSAIIVKAAKHLATRTEKHLSKKLAK
Ga0213879_102002142	3300021439	Bulk Soil	MPHSNRAMRRRSIARKGVRTALIVKAAERLGHRVEKHLKKH
Ga0213853_111097121	3300021861	Watersheds	MRRRHIARKAVKTAIIAKTAQHLAHRVERRPSKRK
Ga0207692_102637682	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MRRRHIARKAIKTAIIAKSARHLARRAERHLGKHQ
Ga0207684_100372875	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRRRRIARKAIKTAIIAKSVRQLARRAEKHLGKHK
Ga0207663_103237401	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	HRKGNSTMRRRHIARKAIKTAIIAKSARHLARRAERHLGKHQ
Ga0207663_104217152	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRRRHIARKAIKTAIIATSARHLARRAERHLGKHQ
Ga0208696_10614472	3300027696	Peatlands Soil	MRRRHIARKAVKTAIIAKSAQRLAHRAEKHLGKHK
Ga0209448_101864102	3300027783	Bog Forest Soil	MRRRRIARKAVKTAIIAKSAQRLAQRAEKHLGKHK
Ga0209656_1000031823	3300027812	Bog Forest Soil	MRRRHIARKAVKTAIIAKSAQHLARRAEKHLHKHQ
Ga0209656_100487033	3300027812	Bog Forest Soil	MRRRRIARKAVKTAIIVKSARRLASRAEKHLAKHV
Ga0209656_100607393	3300027812	Bog Forest Soil	MRRRHIARKAIKTGIIVKSAQHLARRAEKHLHKHQ
Ga0209656_101034492	3300027812	Bog Forest Soil	MRRRQIARKAIKTGIIVKSAQHLARRAERHLSKHK
Ga0209656_101308163	3300027812	Bog Forest Soil	MRRRHIARKAIKTAIIAKSAQHLARRAEKHLRKHQ
Ga0209656_105227302	3300027812	Bog Forest Soil	MRRRHIARKAVKTAIIVKSAHRLAHRAEKHLGKHQ
Ga0209040_103538052	3300027824	Bog Forest Soil	MQRRHIARKAIKTGIIVKSVQHLARRAERHLGKHQ
Ga0209039_103107891	3300027825	Bog Forest Soil	EKETRIMRRRHIARKAIKTGIIVKSAQHLARRAEKHLHKHQ
Ga0209698_106324121	3300027911	Watersheds	MRRRNIARKAVKTAIIAKSAQHLARRAEKHLHKHQ
Ga0268264_118022912	3300028381	Switchgrass Rhizosphere	TGIMRRRRIARKAVKTAIIAKAAHRLGRRAAKHLTKH
Ga0265338_102042142	3300028800	Rhizosphere	MRRRPIVRKAVKTALIAKSAQHLARRVTKHLGKRH
Ga0310039_101639942	3300030706	Peatlands Soil	MRRRHIARKAVKTAIIAKSAQRLGRRAEKHLGKHH
Ga0302325_102286921	3300031234	Palsa	KGTRIMRRRRIARQAVKTAIIAKAAHRLGHRAAKHLTKH
Ga0310686_1053053162	3300031708	Soil	MRRRPVIRKTVKTALITKAAERLGRRAEKHLEKQIKKH
Ga0310686_1062384092	3300031708	Soil	MERRPIIRKTVKTAIIAKAAERLARRAVKQVVKKH
Ga0310686_1173067361	3300031708	Soil	MRRRPILRRAVKTALIAKAAQRLGRRAEQHLSKRVDNHLGKH
Ga0310916_100332654	3300031942	Soil	IRQRGTSIMRRRPIIRKAVKTAIIAKAAQRLGRRAEQHLRRH
Ga0307479_100243163	3300031962	Hardwood Forest Soil	MRRRRMVRKAVKAAIISKTAHRLARRAEKHLSDRITHR
Ga0311301_128705711	3300032160	Peatlands Soil	MRRRNIARKAVKTAIIAKTAQRLAHRAEKHLGKHK
Ga0307471_1016831252	3300032180	Hardwood Forest Soil	MRRRRIARKAVKTAFIATSARQIARRAEKHLRKHKFA
Ga0335085_100354839	3300032770	Soil	MRRRRIARKAVKTAIIAKAARHLARRAEKHLPKHQ
Ga0335085_101229963	3300032770	Soil	MRRRRIARKAVKTAIIAKSAQHIARRAEKHLHKHQ
Ga0335085_103099483	3300032770	Soil	MRRRHIARKAVKTAIIAKTAQHLAHRVETRQSKRK
Ga0335085_103130282	3300032770	Soil	MRRRHIARKAIKTAIIAKSAQHLARRVEKHLSKNQ
Ga0335085_107296572	3300032770	Soil	MRRRHIARKAVKTAIIAKSAQHLARRAERHLGKHQ
Ga0335085_108857371	3300032770	Soil	MRRRHIARKAVKTAIIAKTAQHLAHRVESRHSKRK
Ga0335085_111147982	3300032770	Soil	MRRRRIARKAVKTAIIAKTARHLARRAEKHLPKHQ
Ga0335079_103398023	3300032783	Soil	MRRRHIARKAVKTAIIAKSAQHLARRAEKHLSKHR
Ga0335079_105575951	3300032783	Soil	MHRRIIARKAVNTALIVKAVQRLGRRAEKHLGRPSPHQAR
Ga0335079_119014741	3300032783	Soil	MRRRRIARKAVKTAIIVKSARHLARRAEKHVAKHV
Ga0335079_122227962	3300032783	Soil	MRRRPIVRKAVKTALIAKSAQHLARRVTKHLGKRR
Ga0335080_112007212	3300032828	Soil	MRRRRIARKAVKTAIIAKSAQHLARRAEKHLRKHQ
Ga0335080_115171272	3300032828	Soil	MRRRHIARKAVKTAIIAKSAQHLARRAEKHLGKHQ
Ga0335070_101404574	3300032829	Soil	EKEISTMRRRRIARKAVKTAIIAKSAQHIARRAEKHLHKHQ
Ga0335074_100510753	3300032895	Soil	MRRRRIARKAVKTAIIAKSAQHLARRAERHLGKQQ
Ga0335074_101956695	3300032895	Soil	MRRRPIVRKAVKTAIIVKAAQRLGRRAERHLTKHAEHLGRH
Ga0335074_102525573	3300032895	Soil	MRRRRVIRKAVKTAIIAKSARRLAHRAEKHVAKHV
Ga0335074_103661003	3300032895	Soil	MRRRRIARKAVKTAIIVKSAQHLARRAEKHLAKHV
Ga0335072_107311861	3300032898	Soil	MRRRPIIRKAVKTALIAKSAQHLARRVTKHLGKRH
Ga0335072_113193001	3300032898	Soil	MRRRRIARKAVKTAIIAKAARHLARRAEKHLRKHQ
Ga0335083_106603812	3300032954	Soil	KGTDTMRRRRIARKAVKTAIIVKSARRLASRAEKHLAKHV
Ga0335073_100387864	3300033134	Soil	MRRRPIVRKAVKTALIAKSAQHLARRMTKHLGKRH
Ga0335073_100711623	3300033134	Soil	MRRRRILRKAVKTAIIAKSARRLARRAEKHLAKHV
Ga0335073_102889653	3300033134	Soil	MRRRRIARKAVKTAIIAKTAQHLAHRVESRHSKRK
Ga0335073_105385702	3300033134	Soil	MRRRNIARKAVKTAIIAKSARHLARRAEKHLRRHQ

Hidden Markov Model


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