Metagenome Family F078904

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078904
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	79 residues
Representative Sequence	MSRFAVEWLVPGQPDRLTHVMLLDRERPAPYILAAGHGADKVHALLNLWETLKESEAVAEAIDYVAVEYTRRTGTLPGESTA
Number of Associated Samples	95
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	55.17 %
% of genes near scaffold ends (potentially truncated)	27.59 %
% of genes from short scaffolds (< 2000 bps)	83.62 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.966 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (17.241 % of family members)
Environment Ontology (ENVO)	Unclassified (37.931 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.483 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.36% β-sheet: 19.09% Coil/Unstructured: 54.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.77
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.77
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SCOP family	SCOP domain	Representative PDB	TM-score
c.55.4.1: Ribosomal protein L18 and S11	d1vq8n1	1vq8	0.59882
d.108.1.1: N-acetyl transferase, NAT	d2pq8a_	2pq8	0.5947
c.55.1.0: automated matches	d2w40a1	2w40	0.58235
c.55.3.2: Retroviral integrase, catalytic domain	d3s3na2	3s3n	0.58231
c.55.3.3: mu transposase, core domain	d1bcoa2	1bco	0.57869

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF02627	CMD	19.83
PF10503	Esterase_PHB	5.17
PF00106	adh_short	4.31
PF13360	PQQ_2	3.45
PF16177	ACAS_N	2.59
PF00501	AMP-binding	1.72
PF04389	Peptidase_M28	1.72
PF14534	DUF4440	1.72
PF00069	Pkinase	1.72
PF13085	Fer2_3	0.86
PF12680	SnoaL_2	0.86
PF13620	CarboxypepD_reg	0.86
PF08327	AHSA1	0.86
PF00144	Beta-lactamase	0.86
PF00248	Aldo_ket_red	0.86
PF07589	PEP-CTERM	0.86
PF00593	TonB_dep_Rec	0.86
PF07676	PD40	0.86
PF04198	Sugar-bind	0.86
PF00413	Peptidase_M10	0.86
PF02687	FtsX	0.86
PF08241	Methyltransf_11	0.86
PF07883	Cupin_2	0.86
PF12697	Abhydrolase_6	0.86
PF13442	Cytochrome_CBB3	0.86
PF00326	Peptidase_S9	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	19.83
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	19.83
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	6.90
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.86
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.86
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.86
COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	Transcription [K]	0.86
COG5549	Predicted Zn-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.97 %
Unclassified	root	N/A	24.14 %
Thomasclavelia ramosa	species	Thomasclavelia ramosa	6.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.97 %
Unclassified	root	N/A	24.14 %
Thomasclavelia ramosa	species	Thomasclavelia ramosa	6.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.97 %
Unclassified	root	N/A	24.14 %
Thomasclavelia ramosa	species	Thomasclavelia ramosa	6.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	28.45 %
Unclassified	root	N/A	24.14 %
Thomasclavelia ramosa	species	Thomasclavelia ramosa	6.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.03 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.45 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.59 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.86 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.14 %
Thomasclavelia ramosa	species	Thomasclavelia ramosa	6.90 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.17 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.31 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.59 %
Candidatus Marinimicrobia	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	1.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.86 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.86 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.14 %
Thomasclavelia ramosa	species	Thomasclavelia ramosa	6.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.31 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.31 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.59 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1.72 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.86 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.86 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.86 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.86 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.14 %
Thomasclavelia ramosa	species	Thomasclavelia ramosa	6.90 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	4.31 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.31 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.59 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1.72 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.86 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.86 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.14 %
Thomasclavelia ramosa	species	Thomasclavelia ramosa	6.90 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	4.31 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.31 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.59 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1.72 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.86 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.86 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.14 %
Thomasclavelia ramosa	species	Thomasclavelia ramosa	6.90 %
Agrobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium	4.31 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.31 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.59 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1.72 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.86 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.86 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.14 %
Thomasclavelia ramosa	species	Thomasclavelia ramosa	6.90 %
Agrobacterium rhizogenes	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium rhizogenes	4.31 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.31 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.59 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1.72 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.86 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.86 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101542138	All Organisms → cellular organisms → Bacteria	2749	Open in IMG/M
3300000787\|JGI11643J11755_11546384	Not Available	616	Open in IMG/M
3300000881\|JGI10215J12807_1155407	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300000955\|JGI1027J12803_105678555	All Organisms → cellular organisms → Bacteria	1869	Open in IMG/M
3300000956\|JGI10216J12902_101318424	Not Available	1441	Open in IMG/M
3300000956\|JGI10216J12902_123342678	Not Available	537	Open in IMG/M
3300004157\|Ga0062590_101132533	All Organisms → cellular organisms → Bacteria → Proteobacteria	757	Open in IMG/M
3300004463\|Ga0063356_100768141	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300004463\|Ga0063356_101833527	All Organisms → cellular organisms → Bacteria → Acidobacteria	912	Open in IMG/M
3300004480\|Ga0062592_100705747	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300005294\|Ga0065705_10224253	All Organisms → cellular organisms → Bacteria → Acidobacteria	1303	Open in IMG/M
3300005334\|Ga0068869_100341137	All Organisms → cellular organisms → Bacteria → Proteobacteria	1219	Open in IMG/M
3300005336\|Ga0070680_101320258	Not Available	624	Open in IMG/M
3300005347\|Ga0070668_100344291	All Organisms → cellular organisms → Bacteria → Acidobacteria	1260	Open in IMG/M
3300005353\|Ga0070669_101664809	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	556	Open in IMG/M
3300005354\|Ga0070675_100065085	All Organisms → cellular organisms → Bacteria	3014	Open in IMG/M
3300005356\|Ga0070674_100771293	All Organisms → cellular organisms → Bacteria → Acidobacteria	828	Open in IMG/M
3300005440\|Ga0070705_101896153	Not Available	507	Open in IMG/M
3300005441\|Ga0070700_100105501	All Organisms → cellular organisms → Bacteria → Acidobacteria	1864	Open in IMG/M
3300005456\|Ga0070678_101906931	Not Available	561	Open in IMG/M
3300005546\|Ga0070696_101106786	All Organisms → cellular organisms → Bacteria → Acidobacteria	666	Open in IMG/M
3300005546\|Ga0070696_101653533	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300005564\|Ga0070664_101592089	All Organisms → cellular organisms → Bacteria → Acidobacteria	619	Open in IMG/M
3300005617\|Ga0068859_100083270	All Organisms → cellular organisms → Bacteria	3242	Open in IMG/M
3300005617\|Ga0068859_100663813	All Organisms → cellular organisms → Bacteria → Acidobacteria	1134	Open in IMG/M
3300005718\|Ga0068866_10031090	All Organisms → cellular organisms → Bacteria → Acidobacteria	2568	Open in IMG/M
3300005719\|Ga0068861_101594816	Not Available	643	Open in IMG/M
3300005844\|Ga0068862_101692707	Thomasclavelia ramosa	641	Open in IMG/M
3300006049\|Ga0075417_10131582	All Organisms → cellular organisms → Bacteria → Acidobacteria	1154	Open in IMG/M
3300006196\|Ga0075422_10017977	All Organisms → cellular organisms → Bacteria → Acidobacteria	2381	Open in IMG/M
3300006237\|Ga0097621_102164978	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300006358\|Ga0068871_100363058	All Organisms → cellular organisms → Bacteria → Acidobacteria	1283	Open in IMG/M
3300006844\|Ga0075428_100015020	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8602	Open in IMG/M
3300006844\|Ga0075428_101944816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium rhizogenes	610	Open in IMG/M
3300006845\|Ga0075421_100184658	All Organisms → cellular organisms → Bacteria	2591	Open in IMG/M
3300006845\|Ga0075421_101121134	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300006845\|Ga0075421_101995548	Not Available	618	Open in IMG/M
3300006876\|Ga0079217_10796957	Not Available	655	Open in IMG/M
3300006894\|Ga0079215_11368183	Not Available	551	Open in IMG/M
3300006918\|Ga0079216_10281454	All Organisms → cellular organisms → Bacteria → Acidobacteria	971	Open in IMG/M
3300009012\|Ga0066710_101173517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1189	Open in IMG/M
3300009098\|Ga0105245_12667239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	553	Open in IMG/M
3300009100\|Ga0075418_10036375	All Organisms → cellular organisms → Bacteria	5333	Open in IMG/M
3300009100\|Ga0075418_11558900	Not Available	717	Open in IMG/M
3300009177\|Ga0105248_10740443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1109	Open in IMG/M
3300009177\|Ga0105248_12400071	Not Available	601	Open in IMG/M
3300009553\|Ga0105249_10111013	Not Available	2592	Open in IMG/M
3300009610\|Ga0105340_1396458	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300010036\|Ga0126305_11126023	Not Available	541	Open in IMG/M
3300010040\|Ga0126308_11197095	Not Available	537	Open in IMG/M
3300010401\|Ga0134121_10383871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1265	Open in IMG/M
3300010403\|Ga0134123_10692821	Not Available	995	Open in IMG/M
3300012204\|Ga0137374_11011055	Thomasclavelia ramosa	600	Open in IMG/M
3300012355\|Ga0137369_10532188	Thomasclavelia ramosa	826	Open in IMG/M
3300012532\|Ga0137373_10142187	All Organisms → cellular organisms → Bacteria → Acidobacteria	2035	Open in IMG/M
3300014326\|Ga0157380_10187039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1825	Open in IMG/M
3300014745\|Ga0157377_10702397	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300014745\|Ga0157377_10724079	Thomasclavelia ramosa	725	Open in IMG/M
3300014969\|Ga0157376_10835595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935	Open in IMG/M
3300015371\|Ga0132258_10651463	All Organisms → cellular organisms → Bacteria	2648	Open in IMG/M
3300015371\|Ga0132258_12455493	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300015372\|Ga0132256_102699397	Not Available	596	Open in IMG/M
3300015373\|Ga0132257_102843144	Thomasclavelia ramosa	631	Open in IMG/M
3300015374\|Ga0132255_103729660	Not Available	647	Open in IMG/M
3300015374\|Ga0132255_104852595	All Organisms → cellular organisms → Bacteria → Acidobacteria	570	Open in IMG/M
3300018000\|Ga0184604_10243039	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300018027\|Ga0184605_10296240	Thomasclavelia ramosa	733	Open in IMG/M
3300018051\|Ga0184620_10028542	All Organisms → cellular organisms → Bacteria	1449	Open in IMG/M
3300018075\|Ga0184632_10421909	Not Available	557	Open in IMG/M
3300018078\|Ga0184612_10001080	All Organisms → cellular organisms → Bacteria	13114	Open in IMG/M
3300018422\|Ga0190265_10685858	All Organisms → cellular organisms → Bacteria → Acidobacteria	1146	Open in IMG/M
3300018469\|Ga0190270_13437691	Not Available	502	Open in IMG/M
3300018476\|Ga0190274_10745967	Thomasclavelia ramosa	1030	Open in IMG/M
3300018481\|Ga0190271_12140475	Thomasclavelia ramosa	667	Open in IMG/M
3300018481\|Ga0190271_12296286	All Organisms → cellular organisms → Bacteria → Acidobacteria	644	Open in IMG/M
3300018481\|Ga0190271_12554344	Not Available	612	Open in IMG/M
3300021081\|Ga0210379_10410577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium rhizogenes	599	Open in IMG/M
3300021344\|Ga0193719_10018618	All Organisms → cellular organisms → Bacteria	2954	Open in IMG/M
3300025899\|Ga0207642_10196128	All Organisms → cellular organisms → Bacteria → Acidobacteria	1112	Open in IMG/M
3300025907\|Ga0207645_10161243	All Organisms → cellular organisms → Bacteria → Acidobacteria	1467	Open in IMG/M
3300025907\|Ga0207645_10936869	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300025923\|Ga0207681_10136302	All Organisms → cellular organisms → Bacteria	1822	Open in IMG/M
3300025923\|Ga0207681_11126445	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	659	Open in IMG/M
3300025925\|Ga0207650_10375350	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300025930\|Ga0207701_10678823	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	873	Open in IMG/M
3300025937\|Ga0207669_10112318	All Organisms → cellular organisms → Bacteria	1829	Open in IMG/M
3300025942\|Ga0207689_10856813	Not Available	767	Open in IMG/M
3300025961\|Ga0207712_11400505	Not Available	626	Open in IMG/M
3300025961\|Ga0207712_12064984	Not Available	510	Open in IMG/M
3300025972\|Ga0207668_10058444	All Organisms → cellular organisms → Bacteria	2696	Open in IMG/M
3300027880\|Ga0209481_10346895	Not Available	757	Open in IMG/M
3300027909\|Ga0209382_10000952	All Organisms → cellular organisms → Bacteria	46913	Open in IMG/M
3300027909\|Ga0209382_11765108	Not Available	604	Open in IMG/M
3300028590\|Ga0247823_10879859	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	672	Open in IMG/M
3300028608\|Ga0247819_10711993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium rhizogenes	614	Open in IMG/M
3300028889\|Ga0247827_10729639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium rhizogenes	649	Open in IMG/M
3300031538\|Ga0310888_10838168	All Organisms → cellular organisms → Bacteria → Acidobacteria	571	Open in IMG/M
3300031547\|Ga0310887_10496964	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300031547\|Ga0310887_10804903	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300031562\|Ga0310886_10150558	All Organisms → cellular organisms → Bacteria → Acidobacteria	1224	Open in IMG/M
3300031720\|Ga0307469_11550821	Not Available	635	Open in IMG/M
3300031854\|Ga0310904_10919099	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300031858\|Ga0310892_10123778	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	1457	Open in IMG/M
3300031908\|Ga0310900_10080330	All Organisms → cellular organisms → Bacteria	2028	Open in IMG/M
3300031944\|Ga0310884_10031881	All Organisms → cellular organisms → Bacteria	2238	Open in IMG/M
3300032000\|Ga0310903_10082712	All Organisms → cellular organisms → Bacteria → Acidobacteria	1325	Open in IMG/M
3300032003\|Ga0310897_10165471	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300032012\|Ga0310902_10765569	Not Available	655	Open in IMG/M
3300032017\|Ga0310899_10045890	All Organisms → cellular organisms → Bacteria	1576	Open in IMG/M
3300032017\|Ga0310899_10060239	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1422	Open in IMG/M
3300032122\|Ga0310895_10492746	All Organisms → cellular organisms → Bacteria → Acidobacteria	615	Open in IMG/M
3300032179\|Ga0310889_10108802	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300033551\|Ga0247830_10458486	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	999	Open in IMG/M
3300033551\|Ga0247830_11112090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium rhizogenes	631	Open in IMG/M
3300034115\|Ga0364945_0001190	All Organisms → cellular organisms → Bacteria	7192	Open in IMG/M
3300034176\|Ga0364931_0015897	All Organisms → cellular organisms → Bacteria	2064	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.31%
Host-Associated	Host-Associated	45.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.28%
Plants	Host-Associated → Plants	45.69%
Aquatic	Environmental → Aquatic	6.03%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.79%
Sediment	Environmental → Aquatic → Sediment	5.17%
Floodplain	Environmental → Terrestrial → Floodplain	1.72%
Roots	Host-Associated → Plants → Roots	1.72%
Freshwater	Environmental → Aquatic → Freshwater	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.17%
Loam	Environmental → Terrestrial → Soil → Loam	4.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.31%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.72%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	17.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.31%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.72%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	17.24%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.17%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.17%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.59%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.72%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.72%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.72%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.86%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1015421382	3300000364	Soil	MSRFAVEWLVPGQPDRLTHVMLLDRERPAPYILAAGHGADKVHALLNLWETLKESEAVAEAIDYVAVEYTRRTGTLPGESTA*
JGI11643J11755_115463842	3300000787	Soil	MSRFALQWILPDQCDRFTHVILLDGERPAPYVLAVGRGVDRVNALLNLWRTLSENDALSEAIDYVAVEYTRRSGAAPEGSTR*
JGI10215J12807_11554072	3300000881	Soil	MSRFAVEWLIPADAARLTHVMLLDKERPAPYTLAVGHGEDKVRALLNLWRTLMASGAAPEAVDYVAVEFRRRTGRSPSDP*
JGI1027J12803_1056785552	3300000955	Soil	MSRFAVEWLVPGQPDRLTHVMLLDRERPAPYILAAGHGADKVHALLNLWETLKESEAVAEAIDYV
JGI10216J12902_1013184241	3300000956	Soil	MNRFALQWLLPDQCERLTHVILLDRKRPAPYVSAVGRGVDNADALLNLWGTLNKKDAVSEAIDYVTVEYTRRTGKPPGESIR*
JGI10216J12902_1233426782	3300000956	Soil	MGRFALQWLVPREADRQTHVMLLDRERPAPSVLAVGHGADKAQALLSLWQALITDAEAAEAIAYVADEYARRAGTVPTTS*
Ga0062590_1011325332	3300004157	Soil	MSRFALQWLVPRQSERLTHVMLLDRERPAPYTLCAGHGADKAHALLNLWRTLKESDAIAEAVDYVAVEYTHRTGQAPGDPTD*
Ga0063356_1007681413	3300004463	Arabidopsis Thaliana Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDRERPAPFVLAVGHGTDKMHALLDLWRTLKDSDAAAEAIDYV
Ga0063356_1018335272	3300004463	Arabidopsis Thaliana Rhizosphere	VNDERFGLEWLVPGQPDRLTHVMLLDRERPAPFVVAVGNGADRPHALLSLWRTLIKDGESAEAIEYVADECTRRAGTVPQHRDEDTN*
Ga0062592_1007057472	3300004480	Soil	MSRFAVEWLIPADAARLTHVMLLDKERPAPYTLAVGHGEDKVRALLNLWQTLMASGAAPEAVDYVAVEFRRRTGRSPSDP*
Ga0065705_102242532	3300005294	Switchgrass Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDMERPAPYLLAVGHGADKVHALLNLWHTLKDSDAAEEAIEYIGAEYTRRTGQALRRTD*
Ga0068869_1003411372	3300005334	Miscanthus Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDTERPAPFVLAVGHGTDKMHALLNLWRTLKDSAAAAEAIDYVAARLDAKR*
Ga0070680_1013202582	3300005336	Corn Rhizosphere	DQRFGLEWLVPGQPDRLTHVMLLDRERPAPFVVAVGNGADRPHALLSLWRTLIKDGESAEAIEYVADECTRRAGTVPQHRDEDTN*
Ga0070668_1003442912	3300005347	Switchgrass Rhizosphere	VNDERFGLEWLVPGQPDRLTHVMLLDRERPAPFVVAVGNGADRPHALLSLWRTLIKDGESAEAIEYVADECTRRAGTVPQHRDE
Ga0070669_1016648091	3300005353	Switchgrass Rhizosphere	MSRFAVEGLVPGEPDRFTHAMLLDMERPAPYLLAVGHGADKVHALLNLWHTLKDSDAAEEAIEYIGAEYTRRTGQALRRTD*
Ga0070675_1000650854	3300005354	Miscanthus Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDRERPAPFVLAVGHGTDKMQALLDLWRTLKDSDAAAEAIDYVAARLDAKR*
Ga0070674_1007712932	3300005356	Miscanthus Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDMERPAPYLLAVGHGADKVHALLNLWHTLKDSDAAAEAIEYIGAEYTRRTGQALRRTD*
Ga0070705_1018961531	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VNDERFGLEWLVPGQPDRLTHVMLLDRERPAPFVVAVGNGADKPHALLSLWRTLIKDAESAAAIEYVADECTRRAGTVPQHRDEDTN*
Ga0070700_1001055012	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDTERPAPFVLAVGHGTDKMHALLDLWRTLKDSDAAAEAIDYVAARLDAKR*
Ga0070678_1019069312	3300005456	Miscanthus Rhizosphere	RAVKDANDDVSRFALEWLVPGQSDRLTHVMLLDRERAAPFVVAVGYGADKAHALLSLWRTLIKDAESAEAIEYVADECTRRAGTRPTTS*
Ga0070696_1011067861	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSRFAVEWLLPVQPDRLTHVTLLDKERPAPFVFAAGHGADKMHALLNLWEGLKQNGAVAEAIDYVATEYTRRAGRAPGESTD*
Ga0070696_1016535332	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VNDERFGLEWLVPGQPDRLTHVMLLDRERPAPFVVAVGNGADRPHALLSLWRTLIKDGESAEAIEYVADECTRRAGTV
Ga0070664_1015920892	3300005564	Corn Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDRERPAPFVLAVGHGTDKMHALLDLWRTLKDSDAAAEAIDYVAARLDAKR*
Ga0068859_1000832701	3300005617	Switchgrass Rhizosphere	VNDERFGLEWLVPGQPDRLTHVMLLDRERPAPFVVAVGNGADRPHALLSLWRTLIKDGESAEAIEYVADECTRRTGTVPQHRDEDTN*
Ga0068859_1006638132	3300005617	Switchgrass Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDRERPAPFVLAVGHGTDKMHALLNLWRTLKDSAAAAEAIDYVAARLDAKR*
Ga0068866_100310902	3300005718	Miscanthus Rhizosphere	VNDERFGLEWLVPGQPDRLTHVMLLDRERPAPFVVAVGNGADRPHALLSLWRTLIKDGESAEAIEYVADECTRRAGTVPQHRDEDSN*
Ga0068861_1015948162	3300005719	Switchgrass Rhizosphere	RFAVEWLVPVQPDRLTHVTLLDRERPSPFVFAAGHGTDKIHALLNLWEGLKQNGAVAEAIDYVATEYTRRAGRPPGH*
Ga0068862_1016927071	3300005844	Switchgrass Rhizosphere	MRFAVEWLVPDQPDRLTHAMLLDRDRPEPYVFAVGHGPDKPHALLKLWRTLRESDAAAEA
Ga0075417_101315823	3300006049	Populus Rhizosphere	MSRFALQWLLPDQCERLTHVILLDRERPAPYVLAVGHGVDNAKALLNLWRTLNKKGAVSEAIDYVTVEYTRRTDKAPGELLP*
Ga0075422_100179775	3300006196	Populus Rhizosphere	MSRFALQWLLPDQCERLTHVILLDRERPAPYVLAVGHGVDNAKALLNLWRTLNKKGAVSEAIDYVTVEYTRRTDKAPGELIP*
Ga0097621_1021649781	3300006237	Miscanthus Rhizosphere	MSRFALEWIVPSLPDRLTHVMLLDRERPAPFVVAVGNGADKPHALLSLWRTLIKDAESAEAIEY
Ga0068871_1003630582	3300006358	Miscanthus Rhizosphere	MSRFALEWIVPSLPDRLTHVMLLDRERPAPFVVAVGNGADKPHALLSLWRTLIKDAESAEAIEYVADECTRRAGTRPTTS*
Ga0075428_1000150208	3300006844	Populus Rhizosphere	MSRFALQWILPDQCDRFTHVILLDRERPAPYVLAVGRGVDRVNALLNLWWTLRENDALSEAIDYVAVEYTRRSGAAPEGSTR*
Ga0075428_1019448162	3300006844	Populus Rhizosphere	MGRFALQWLVPREADRQTHVMLLDRERPAPSVLAVGHGADKVYALLSLWRALIKDAESAEAIAYVADEYTRRAGTVPTTS*
Ga0075421_1001846585	3300006845	Populus Rhizosphere	MDQFALQWLVPRAPNRQTHVMLLDRERPAPSVLAVGHGADKVHALLSLWRTLITDAESAAAIAYVADEYTRRAGTAPTTS*
Ga0075421_1011211341	3300006845	Populus Rhizosphere	MSRFALQWILPDQCDRFTHVILLDGERPAPYVLAVGRGVDRVNALLNLWRTLSEHDALSEAVDYVAVEYTRRSGAAPEGSTR*
Ga0075421_1019955482	3300006845	Populus Rhizosphere	MSRFLLQWLIPCRADRLTHVMLLDRDRPAPYVLAVGHGADKSHALLNLWSTLKDSAAAPEAIDYVARRWRIAKGS*
Ga0079217_107969571	3300006876	Agricultural Soil	MSSRWTISRFALDWLVPDQPDRLTHVMLLDRERPAPYVLAVGHGADKVHALLNLWGALKDSDAVPEAIDYVAVEYTRRAGTAPGKSTD*
Ga0079215_113681831	3300006894	Agricultural Soil	MNRFALQWLLPDQCERLTHVILLDRKRPAPYVSAVGRGVDNADALLNLWGTLNKKDAVSEAIDYVTVEYTRRTGKP
Ga0079216_102814542	3300006918	Agricultural Soil	PLMSSRWTISRFALDWLVPDQPDRLTHVMLLDRERPAPYVLAVGHGADKVHALLNLWGALKDSDAVPEAIDYVAVEYTRRAGTAPGKSTD*
Ga0066710_1011735172	3300009012	Grasslands Soil	MSRFAVEWLVPGEPDRFTHAMLLDMERPAPYVLAVGHGADKVHALLNLWGTLKHSDAAAEAIDYIAAEYRRRTGQVLGEANA
Ga0105245_126672391	3300009098	Miscanthus Rhizosphere	MSRFALEWIVPSLPDRLTHVMLLDRERPAPFVVAVGNGADKPHALLSLWRTLIKDAESAEAIEYVAGECTRRGRHGPTTS*
Ga0075418_100363754	3300009100	Populus Rhizosphere	MSRFALQWLLPDQCERLTHVILLDRERPAPYVLAVGHGVDNAKALLNLWRTLNKKGAVSEAIDYVTVEYTRRTDKAPGEFIP*
Ga0075418_115589002	3300009100	Populus Rhizosphere	MGRFALQWLVPREADRQTHVMLLDRERPAPSVLAVGHGADKVYALLSLWRALITDAESAEAIAYVADEYTRRAGTGPTHRDDHAN*
Ga0105248_107404432	3300009177	Switchgrass Rhizosphere	MSRFALEWIVPSLPDRLTHVMLLDRERPAPFVVAVGNGADKPHALLSLWRTLIKDAESAEAIEYVADECTRRACTVPQRRDEDPD*
Ga0105248_124000712	3300009177	Switchgrass Rhizosphere	MPDEPDRLTHVMLLDGERPAPYVLAVGHGADKVHALLNLWRTLIEDQALPQAIDYVAVAYTRRTGKAPGKSNS*
Ga0105249_101110134	3300009553	Switchgrass Rhizosphere	RWKMSRFAVEWLVPGEPDRFTHVMLLDRERPAPFVLAVGHGTDKMHALLDLWRTLKDSDAAAEAIDYVAARLDAKR*
Ga0105340_13964581	3300009610	Soil	MSRFAVEWLVPAQPDRLIHVMLLDRDRPAPYVFAVGHGADKVHALLNLWAGLKENDAVAEAMDYVAVEYKRRTGSAPRESTN
Ga0126305_111260232	3300010036	Serpentine Soil	MSRFALEWLVPRGPDRLTHVMLLDRERPAPYAVAVGHGADNAHALLNLWQTLIDSDALQPAIDYV
Ga0126308_111970952	3300010040	Serpentine Soil	MLLDRERPAPYALAVGHGADNAQALLNLWQTLVETEALPQAIDYVAAAYTHRTGKSPAKSGN*
Ga0134121_103838712	3300010401	Terrestrial Soil	VKDANDDVSRFALEWLVPGQSDRLTHVMLLDRERAAPFVVAVGYGADKAHALLSLWRTLIKDAESAEAIEYVADECTRRAGTRPTPS*
Ga0134123_106928212	3300010403	Terrestrial Soil	MSRFALEWLVPGQPDRLTHVMLLDRERAAPFVVAVGYGADKAHALLSLWRTLIKDAESAEAIEYVADECTRRAGTRPTTS*
Ga0137374_110110552	3300012204	Vadose Zone Soil	MNRFALQWLVPGHPDRLTHVMLLDRERPAPFVLAVGHGADKVHALLSLWETLTKEAESAEAIAYVAVEYTRRTGKVPGTS*
Ga0137369_105321882	3300012355	Vadose Zone Soil	MSRFALEWLVPGQPDRLTHVMLLDRERPAPFVVAAGHGADKALALLSLWRTLVKGAESADAVKYIADEYTRRAGTAPTASGQG*
Ga0137373_101421873	3300012532	Vadose Zone Soil	MNRFALQWLVPGHPDRLTHVMLLDRERPAPFVLAVGHGADKVHALLSLWGTLTKEAESGEAIAYVAVEYTRRTGKVPGTS*
Ga0157380_101870392	3300014326	Switchgrass Rhizosphere	MSRFAVEWLVPVQPDRLTHVTLLDRERPSPFVFAAGHGTDKIHALLNLWEGLKQNGAVAEAIDYVATEYTRRAGRPPGH*
Ga0157377_107023972	3300014745	Miscanthus Rhizosphere	LVPDQPDRLTHAMLLDRERPAPYVFAVGHGPDKAHALLKLWRTLRESDAAAEAIDYVAVEYRRRTGQSPGDS*
Ga0157377_107240792	3300014745	Miscanthus Rhizosphere	MMRFAVEWLVPDQPDRLTHAMLLDRERPAPYVFAVGHGPDKAHALLKLWRTLRESDAAAEAIDYVAVEYRRRTGQSPGDSSD*
Ga0157376_108355952	3300014969	Miscanthus Rhizosphere	MSRFALEWIVPGLPDRLTHVMLLDRERPAPFVVAVGNGADKPHALLSLWRTLIKDAESAEAIEYVADECTRRACTVPQRRDEDPD*
Ga0132258_106514632	3300015371	Arabidopsis Rhizosphere	MSRFAIEWLVPGEPDRFTHVMLLDSERPAPFVLAVGHGPDKVHALLNLWRTLKDSDAAAEAIDYVVARLDPKR*
Ga0132258_124554932	3300015371	Arabidopsis Rhizosphere	MGRFALQWLVPREADRQTHVMLLDRERPAPSVLTVGHGADKVQALLSLWRTVIKDAESAEAIAYVADAYTRRAGTVPTTS*
Ga0132256_1026993971	3300015372	Arabidopsis Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDRERPAPFVLAVGHGADKLHALLTLWRALKDSDAAAEAIDYVAARLDATR*
Ga0132257_1028431442	3300015373	Arabidopsis Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDRERPAPFVLAVGHGTDKVHALLNLWRTLKDSDAAAEAIDYVAARLDAKR*
Ga0132255_1037296601	3300015374	Arabidopsis Rhizosphere	MSRFAIEWLVPGEPDRFTHVMLLDSERPAPFVLAVGHGPDKVHALLNLWRTLKDSDAAAEAIDYVAARLDAKR*
Ga0132255_1048525951	3300015374	Arabidopsis Rhizosphere	MGRFALQWLVPREADRQTHVMLLDRERPAPSVLTVGHGADKVQALLSLWRTVIKDAESAEAIAYVADAYTR
Ga0184604_102430391	3300018000	Groundwater Sediment	RFAVEWLVPVQPDRLTHVTLLDKERPAPFVFAAGHGADKMHALLNLWEGLKQNGAVAEAIDYVATEYTRRAGRAPGE
Ga0184605_102962401	3300018027	Groundwater Sediment	MSRFAVEWLVPVQPDRLTHVTLLDRERPAPFVFAAGHGADKMHALLNLWEGLKQNGAVAEAIAYVATEYTRRAGRAPGESTD
Ga0184620_100285421	3300018051	Groundwater Sediment	MSRFAVEWLVPVQPDRLTHVTLLDRERPAPFVFAAGHGADKMHALLNLWEGLKQNGAVAEAIDYVATEYTRRAGRAPGESTD
Ga0184632_104219092	3300018075	Groundwater Sediment	MSRFALQWLVPREPDRLTHVMLLDRERPAPSVLTVGHGADKVHALLSLWRTLIKDAESAEAIEYVAVEYTRRAGTVPTTS
Ga0184612_1000108010	3300018078	Groundwater Sediment	MDRFAVEWLVPAQPDRLIHAMLLDRERPAPHVFAVGHGADKGHALLNLWATLKQNEVVAEAIDYVAAVYTRRTGRAPGESTG
Ga0190265_106858582	3300018422	Soil	MSRFAVEWLVPAKPDRPIHVMLLDRSRPAPYVFAAGHGADKVQALRNLWGDLKQNDAVAEAIDYVAAEYTRRAGRAPDTSTG
Ga0190270_134376912	3300018469	Soil	MRRFAVEWLVPDQPDRFTHVMLLDRDRPAPYVLSVGHGTDRVQALLTLWRALDASDAAAEALDYVAAEYARRTGRVPEQSSARPHLKGRKA
Ga0190274_107459671	3300018476	Soil	MGRYALQWLVPREPDRQTHVMLLDRERPAPSVLAAGHGADKVQALLSLWRAIVTDAESAEAIAYVADEYTRRAGTVPQHRDDRGN
Ga0190271_121404751	3300018481	Soil	MTRFAVEWLVPGQPGRLTHVKLLDILRPAPYIVAVGHGADKVLALLSLWRSLKETGAVAEAIDYVAAEYTRRAGTPPDA
Ga0190271_122962862	3300018481	Soil	MSRYALQWLVPREPDRQTHAMLLDRERPAPSVLAVGHGVDKVHALLSLWQALIKDGESAEAIDYVAGEYTRRAGKASITS
Ga0190271_125543441	3300018481	Soil	SPRGEVQGGPGDEVPRNRAMSRFAVEWLVPGQPDRLTHVMLLDTERPAPYVVAVGYGCDRVHALLRLWGTLKESDAVAEAIDYVAAEYTRRTGTRPGNSPA
Ga0210379_104105771	3300021081	Groundwater Sediment	LVPSEADRQTHVMLLDRERPAPSVLAVGHGADKVQALLCLWRALIKDAESAEAIAYVADEYTRRAGTVPTTS
Ga0193719_100186182	3300021344	Soil	MSRFAVEWLVPAEPDRLTHVMLLDKERPAPFVFAAGHGADKMHALLNLWEGLKQNGAVAEAIDYVATEYTRRAGRAPGESTD
Ga0207642_101961281	3300025899	Miscanthus Rhizosphere	VNDERFGLEWLVPGQPDRLTHVMLLDRERPAPFVVAVGNGADRPHALLSLWRTLIKDGESAEAIEYVADECTRRAGTVPQHRDEDTN
Ga0207645_101612432	3300025907	Miscanthus Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDRERPAPFVLAVGHGTDKMHALLNLWRTLKDSAAAAEAIDYVAARLDAKR
Ga0207645_109368692	3300025907	Miscanthus Rhizosphere	MLLDMERPAPYLLAVGHGADKVQALLNLWGTLIENHALPAAIDYVAVAYTRRTRKAPGKSTD
Ga0207681_101363022	3300025923	Switchgrass Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDRERPAPFVLAVGHGTDKMHALLDLWRTLKDSDAAAEAIDYVAARLDAKR
Ga0207681_111264451	3300025923	Switchgrass Rhizosphere	PGEPDRFTHAMLLDMERPAPYLLAVGHGADKVHALLNLWHTLKDSDAAEEAIEYIGAEYTRRTGQALRRTD
Ga0207650_103753502	3300025925	Switchgrass Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDRERPAPFVLAVGHGTDKMQALLDLWRTLKDSDAAAEAIDYVAARLDAKR
Ga0207701_106788231	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MSRFAVEWLVPDQPDRLTHAMLLDRERPAPYVFAVGHGPDKAHALLKLWRTLRESDAAAEAIDYVAVEYRRRTGQSPGDS
Ga0207669_101123181	3300025937	Miscanthus Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDMERPAPYLLAVGHGADKVHALLNLWHTLKDSDAAAEAIEYIGAEYTRRTGQALRRTD
Ga0207689_108568132	3300025942	Miscanthus Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDTERPAPFVLAVGHGTDKMHALLNLWRTLKDSAAAAEAIDYVAARLDAKR
Ga0207712_114005052	3300025961	Switchgrass Rhizosphere	AVEWLVPGEPDRFTHAMLLDRERPAPFVLAVGHGTDKMHALLDLWRTLKDSDAAAEAIDYVAARLDAKR
Ga0207712_120649841	3300025961	Switchgrass Rhizosphere	MGRFALQWLMPDEPDRLTHVMLLDGERPAPYVLAVGHGADEVHALLTLWRTLIENHALPEAIDYVAVAYTSRTGKAPGKSSN
Ga0207668_100584441	3300025972	Switchgrass Rhizosphere	MSRFAVEWLVPGEPDRFTHAMLLDTERPAPFVLAVGHGTDKMHALLDLWRTLKDSDAAAEAIDYVAARLDAKR
Ga0209481_103468951	3300027880	Populus Rhizosphere	MSRFALQWLLPDQCERLTHVILLDRERPAPYVLAVGHGVDNAKALLNLWRTLNKKGAVSEAIDYVTVEYTRRTDKAPGELIP
Ga0209382_1000095253	3300027909	Populus Rhizosphere	MSRFALQWILPDQCDRFTHVILLDRERPAPYVLAVGRGVDRVNALLNLWWTLRENDALSEAIDYVAVEYTRRSGAAPEGSTR
Ga0209382_117651082	3300027909	Populus Rhizosphere	MSRFLLQWLIPCRADRLTHVMLLDRDRPAPYVLAVGHGADKSHALLNLWSTLKDSAAAPEAIDYVARRWRIAKGS
Ga0247823_108798591	3300028590	Soil	MSQYALQWLVPREPDRQTHVMLLDRERPAPSVLAVGHGVDKVRALLSLWQALIKDAESAEAIDYVAGEYTRRAGTAPMTS
Ga0247819_107119932	3300028608	Soil	MSRFALQWLVPRQSERLTHVMLLDRERPAPYTLCAGHGADKAHALLNLWRTLKESDAIAEAVDYVAVEYTHRTGQAPGDPTD
Ga0247827_107296391	3300028889	Soil	DPYGDPLQCATRTGPGTMSRFALQWLVPRQSERLTHVMLLDRERPAPYTLCAGHGADKAHALLNLWRTLKESDAIAEAVDYVAVEYTHRTGQAPGDPTD
Ga0310888_108381681	3300031538	Soil	MRRFALQWLVPGQPERLTHVMLLDRERPAPYTLAVGYGSDKVQALLTLWQALDESDAAAEALD
Ga0310887_104969641	3300031547	Soil	MSRFAVEWLVPADAARLTHVMLLDKERPAPYTLAVGHGEDKVRALLNLWQTLMESGAAPEAVDYVAVEFRRRTGRSPSDP
Ga0310887_108049031	3300031547	Soil	MRRFALQWLVPGQPERLTHVMLLDRERPAPYTLAVGYGSDKVQALLTLWQALDESDAAAEALDYVSA
Ga0310886_101505582	3300031562	Soil	MSRFALQWLLPDQCERLTHVILLDRERPAPYVLAVGHGVDNAKALLNLWRTLNKKGAVSEAIDYVTVEYTRRTDKAPGELLP
Ga0307469_115508212	3300031720	Hardwood Forest Soil	MSRFAVEWLVPAEPDRFTHAMLLDRERPAPFVLAVGHGADKVHALLNLWRTLKDSDAAAEAIDYVAARLDAKR
Ga0310904_109190991	3300031854	Soil	MSRFAVEWLVPADAARLTHVMLLDKERPAPYTLAVGHGEDKVHALLNLWQTLVESGAAPEAVDYVAVEYQRRTGRSPSDPINAP
Ga0310892_101237782	3300031858	Soil	MSRFALQWLVPGQPERLTHVMLLDRERPAPYTLAVGYGSDKVRALLSLWQTLDESDAAAEALDYVSAEYERRTGIVPEKSAPRPQLKGRKA
Ga0310900_100803301	3300031908	Soil	MRRFALQWLVPGQPERLTHVMLLDRERPAPYTLAVGYGSDKVQALLTLWQALDESDAAAEALDYVSAEYERRTGI
Ga0310884_100318812	3300031944	Soil	MRRFALQWLVPGQPERLTHVMLLDRERPAPYTLAVGYGSDKVQALLTLWQALDESDAAAEALDYVSAEYERRTGIVPEKSAPRPQLKGRKA
Ga0310903_100827122	3300032000	Soil	RFALQWLVPGQPERLTHVMLLDRERPAPYTLAVGYGSDKVQALLTLWQALDESDAAAEALDYVSAEYERRTGIVPEKSAPRPQLKGRKA
Ga0310897_101654712	3300032003	Soil	MSRFAVEWLVPGEPDRFTHAMLLDRERPAPFVLAVGHGTDKMQALLNLWRTLKDSAAAAEAIDYVAARLDAKR
Ga0310902_107655691	3300032012	Soil	LLPVRLRTDVCGGERMSRFALQWLLPDQCERLTHVILLDRERPAPYVLAVGHGVDNAKALLNLWRTLNKKGAVSEAIDYITVEYTRRTD
Ga0310899_100458902	3300032017	Soil	MSRFAVEWLIPADAARLTHVMLLDKERPAPYTLAVGHGEDKVRALLNLWQTLMESGAAPEAVDYVAVEFRRRTGRSPSVP
Ga0310899_100602391	3300032017	Soil	VRLRTDVCGGERMSRFALQWLLPDQCERLTHVILLDRERPAPYVLAVGHGVDNAKALLNLWTTLNKKGAVSEAIDYVTVEYTRRTDKAPGELIP
Ga0310895_104927461	3300032122	Soil	MRRFALQWLVPGQPERLTHVMLLDRERPAPYTLAVGYGSDKVQALLTLWQALDESDAAAEALDYVS
Ga0310889_101088022	3300032179	Soil	MSRFAVEWLIPADAARLTHVMLLDKERPAPYTLAVGHGEDKVHALLNLWQTLVESGAAPEAVDYVAVEFRRRTGRSPSDP
Ga0247830_104584861	3300033551	Soil	MSRYALQWLVPREPDRQTHVMLLDRERPAPSVLAVGHGVDKVRALLSLWQALIKDAESAEAIDYVAGEYTRRAGTAPMTS
Ga0247830_111120901	3300033551	Soil	PRQSERLTHVMLLDRERPAPYTLCAGHGADKAHALLNLWRTLKESDAIAEAVDYVAVEYTHRTGQAPGDPTD
Ga0364945_0001190_5373_5615	3300034115	Sediment	MGRFALQWLVPSEADRQTHVMLLDRERPAPSVLAVGHGADKVQALLCLWRSLIKDAESAEAIGYAADEYTRRAGTVPTAS
Ga0364931_0015897_78_320	3300034176	Sediment	MGRFALQWLVPSEADRQTHVMLLDRERPAPSVLAVGHGADKVQALLCLWRALIKDAESAEAIAYVADEYTRRAGTVPTAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078904

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences