Metagenome Family F078856

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078856
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	94 residues
Representative Sequence	MRTFNWRVTTLAAAAFLLGMIAAGSGTLRAAWEPIARLVTLQDPPKPASANVLSEHEIEALDGAPPQSQAELLLERAINHYSGANDQIAAR
Number of Associated Samples	102
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	26.55 %
% of genes near scaffold ends (potentially truncated)	97.41 %
% of genes from short scaffolds (< 2000 bps)	93.10 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.621 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (10.345 % of family members)
Environment Ontology (ENVO)	Unclassified (39.655 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.207 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 54.62% β-sheet: 0.00% Coil/Unstructured: 45.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF07478	Dala_Dala_lig_C	8.62
PF03241	HpaB	4.31
PF11752	DUF3309	3.45
PF00069	Pkinase	3.45
PF13564	DoxX_2	1.72
PF08281	Sigma70_r4_2	1.72
PF11794	HpaB_N	1.72
PF00004	AAA	1.72
PF00202	Aminotran_3	1.72
PF13561	adh_short_C2	0.86
PF02567	PhzC-PhzF	0.86
PF00310	GATase_2	0.86
PF13646	HEAT_2	0.86
PF01966	HD	0.86
PF13620	CarboxypepD_reg	0.86
PF07715	Plug	0.86
PF04972	BON	0.86
PF12543	DUF3738	0.86
PF13450	NAD_binding_8	0.86
PF04519	Bactofilin	0.86
PF13147	Obsolete Pfam Family	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	13.79
COG2368	Aromatic ring hydroxylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	4.31
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	0.86
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.48 %
Unclassified	root	N/A	15.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.48 %
Unclassified	root	N/A	15.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.62 %
Unclassified	root	N/A	15.52 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	66.38 %
Unclassified	root	N/A	15.52 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.86 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	58.62 %
Unclassified	root	N/A	15.52 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %
Fungi	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	0.86 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.62 %
Unclassified	root	N/A	15.52 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.86 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.86 %
Dikarya	subkingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	0.86 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.62 %
Unclassified	root	N/A	15.52 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.86 %
Ascomycota	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	0.86 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.62 %
Unclassified	root	N/A	15.52 %
saccharomyceta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.86 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.62 %
Unclassified	root	N/A	15.52 %
Pezizomycotina	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.86 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.62 %
Unclassified	root	N/A	15.52 %
leotiomyceta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.86 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.62 %
Unclassified	root	N/A	15.52 %
sordariomyceta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.86 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.62 %
Unclassified	root	N/A	15.52 %
Sordariomycetes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.86 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.62 %
Unclassified	root	N/A	15.52 %
Hypocreomycetidae	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.86 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.62 %
Unclassified	root	N/A	15.52 %
Hypocreales	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.86 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.62 %
Unclassified	root	N/A	15.52 %
Nectriaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Nectriaceae	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.86 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.62 %
Unclassified	root	N/A	15.52 %
Fusarium	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Nectriaceae → Fusarium	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.86 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.62 %
Unclassified	root	N/A	15.52 %
Fusarium oxysporum species complex	species group	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Nectriaceae → Fusarium → Fusarium oxysporum species complex	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.86 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.62 %
Unclassified	root	N/A	15.52 %
Fusarium oxysporum	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Nectriaceae → Fusarium → Fusarium oxysporum species complex → Fusarium oxysporum	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.86 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000787\|JGI11643J11755_11175973	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300001431\|F14TB_103789065	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	714	Open in IMG/M
3300002568\|C688J35102_120226596	All Organisms → cellular organisms → Bacteria → Acidobacteria	937	Open in IMG/M
3300004156\|Ga0062589_100235844	All Organisms → cellular organisms → Bacteria	1357	Open in IMG/M
3300004156\|Ga0062589_100675146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	912	Open in IMG/M
3300004157\|Ga0062590_100619526	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	955	Open in IMG/M
3300004463\|Ga0063356_102763953	Not Available	755	Open in IMG/M
3300004480\|Ga0062592_100541456	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300005093\|Ga0062594_102712324	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300005179\|Ga0066684_10606991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300005295\|Ga0065707_10363809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	900	Open in IMG/M
3300005328\|Ga0070676_10227827	Not Available	1234	Open in IMG/M
3300005332\|Ga0066388_102984956	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300005334\|Ga0068869_100103576	All Organisms → cellular organisms → Bacteria	2156	Open in IMG/M
3300005335\|Ga0070666_10833797	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300005336\|Ga0070680_100455169	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1093	Open in IMG/M
3300005339\|Ga0070660_101737926	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300005345\|Ga0070692_11273739	Not Available	526	Open in IMG/M
3300005353\|Ga0070669_101346291	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300005354\|Ga0070675_100095121	All Organisms → cellular organisms → Bacteria	2501	Open in IMG/M
3300005364\|Ga0070673_100352534	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300005365\|Ga0070688_101392425	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300005441\|Ga0070700_101041305	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300005444\|Ga0070694_100208069	All Organisms → cellular organisms → Bacteria	1462	Open in IMG/M
3300005444\|Ga0070694_101372721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300005445\|Ga0070708_100903009	All Organisms → cellular organisms → Bacteria → Acidobacteria	829	Open in IMG/M
3300005446\|Ga0066686_10188288	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300005455\|Ga0070663_101646462	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300005457\|Ga0070662_100843799	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
3300005459\|Ga0068867_100452456	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1094	Open in IMG/M
3300005468\|Ga0070707_100706851	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	971	Open in IMG/M
3300005468\|Ga0070707_100845679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	879	Open in IMG/M
3300005529\|Ga0070741_10505523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1092	Open in IMG/M
3300005535\|Ga0070684_101651665	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300005539\|Ga0068853_102316216	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300005545\|Ga0070695_101690907	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300005546\|Ga0070696_101207014	Not Available	639	Open in IMG/M
3300005577\|Ga0068857_102085863	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300005617\|Ga0068859_102147953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300005713\|Ga0066905_100756985	All Organisms → cellular organisms → Bacteria → Acidobacteria	839	Open in IMG/M
3300005764\|Ga0066903_103550721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	840	Open in IMG/M
3300005840\|Ga0068870_10519856	Not Available	796	Open in IMG/M
3300005840\|Ga0068870_11287299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300006358\|Ga0068871_100929466	All Organisms → cellular organisms → Bacteria → Acidobacteria	807	Open in IMG/M
3300006844\|Ga0075428_100755821	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1034	Open in IMG/M
3300006852\|Ga0075433_10578107	All Organisms → cellular organisms → Bacteria → Acidobacteria	987	Open in IMG/M
3300006852\|Ga0075433_11865368	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Nectriaceae → Fusarium → Fusarium oxysporum species complex → Fusarium oxysporum	516	Open in IMG/M
3300006854\|Ga0075425_102357131	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300006904\|Ga0075424_101822750	Not Available	643	Open in IMG/M
3300006904\|Ga0075424_102285648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300009098\|Ga0105245_11254178	Not Available	790	Open in IMG/M
3300009098\|Ga0105245_12577727	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300009147\|Ga0114129_10483490	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1620	Open in IMG/M
3300009148\|Ga0105243_11168993	Not Available	781	Open in IMG/M
3300009162\|Ga0075423_13138653	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300009802\|Ga0105073_1023190	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300010044\|Ga0126310_11596979	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300010047\|Ga0126382_10361496	Not Available	1117	Open in IMG/M
3300010047\|Ga0126382_10409798	All Organisms → cellular organisms → Bacteria → Acidobacteria	1061	Open in IMG/M
3300010047\|Ga0126382_12364909	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300010336\|Ga0134071_10395754	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300010366\|Ga0126379_10504504	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1282	Open in IMG/M
3300010373\|Ga0134128_12747344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300010397\|Ga0134124_12143182	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300010400\|Ga0134122_12475073	Not Available	568	Open in IMG/M
3300010401\|Ga0134121_10901972	Not Available	859	Open in IMG/M
3300010401\|Ga0134121_12186783	Not Available	590	Open in IMG/M
3300011443\|Ga0137457_1141241	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	795	Open in IMG/M
3300012096\|Ga0137389_10879555	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300012208\|Ga0137376_10307199	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1376	Open in IMG/M
3300012353\|Ga0137367_10894091	Not Available	612	Open in IMG/M
3300012499\|Ga0157350_1042474	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300012685\|Ga0137397_10645324	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	787	Open in IMG/M
3300012912\|Ga0157306_10348242	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300012922\|Ga0137394_10870944	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300012922\|Ga0137394_11056693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300012930\|Ga0137407_11598311	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300012985\|Ga0164308_10771880	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	835	Open in IMG/M
3300012989\|Ga0164305_10698007	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300014326\|Ga0157380_10119439	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2230	Open in IMG/M
3300015052\|Ga0137411_1250005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	644	Open in IMG/M
3300015371\|Ga0132258_13286315	Not Available	1113	Open in IMG/M
3300015372\|Ga0132256_103535796	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300015374\|Ga0132255_100446241	All Organisms → cellular organisms → Bacteria	1892	Open in IMG/M
3300015374\|Ga0132255_105867905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300017654\|Ga0134069_1139324	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	806	Open in IMG/M
3300018052\|Ga0184638_1083769	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1169	Open in IMG/M
3300018469\|Ga0190270_12052964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300019881\|Ga0193707_1077087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1027	Open in IMG/M
3300025908\|Ga0207643_10893405	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300025911\|Ga0207654_11154961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300025917\|Ga0207660_10386187	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1126	Open in IMG/M
3300025922\|Ga0207646_10524473	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1066	Open in IMG/M
3300025935\|Ga0207709_10153237	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300025942\|Ga0207689_10116714	All Organisms → cellular organisms → Bacteria	2194	Open in IMG/M
3300025972\|Ga0207668_11661320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300026041\|Ga0207639_12051276	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300026075\|Ga0207708_10013366	All Organisms → cellular organisms → Bacteria	6134	Open in IMG/M
3300026075\|Ga0207708_10151520	All Organisms → cellular organisms → Bacteria	1826	Open in IMG/M
3300026089\|Ga0207648_11283089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300026118\|Ga0207675_100379242	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300026323\|Ga0209472_1222142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300028589\|Ga0247818_11367218	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300028878\|Ga0307278_10391606	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	611	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1133936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300031740\|Ga0307468_100985061	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
3300031740\|Ga0307468_101554688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300031858\|Ga0310892_10620407	Not Available	734	Open in IMG/M
3300032001\|Ga0306922_11979974	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300032075\|Ga0310890_10455135	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300032144\|Ga0315910_10441740	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300032180\|Ga0307471_100305127	All Organisms → cellular organisms → Bacteria	1681	Open in IMG/M
3300032211\|Ga0310896_10376136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.07%
Host-Associated	Host-Associated	37.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.34%
Plants	Host-Associated → Plants	37.93%
Aquatic	Environmental → Aquatic	1.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.66%
Sediment	Environmental → Aquatic → Sediment	1.72%
Roots	Host-Associated → Plants → Roots	1.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.52%
Loam	Environmental → Terrestrial → Soil → Loam	18.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.07%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.72%
Sand	Environmental → Terrestrial → Soil → Sand	1.72%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.45%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.72%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.72%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.72%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.72%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.34%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.03%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.03%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.72%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.86%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.86%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.86%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009802	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012499	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J11755_111759732	3300000787	Soil	MSASNWRGITVGVAAFFLGTIATGSGTLRAAWEPLARVIGLEEQRTPASANVLSEHEAEARDEMSPQSQAELLLERSINHYRGTNEQIAARVNSWRGHIELTARLSNLFTAAINSDD
F14TB_1037890651	3300001431	Soil	MHWRTMSLVVAAFLLGAFAAGSGTLGAARLQGLGDAGLHLIARVVGLDDQRTPASANVLSEHEIEVLDSMPPQSQAELLLERSINHYRGANEQIAARVRGWR
C688J35102_1202265962	3300002568	Soil	MGHPDARTTTIAAVAFLCGTIAAGSGTLRAAWEPLARFVSLQDRPQPASANVLSEHETAVLGAMPPQSQAELLLERAINHY
Ga0062589_1002358441	3300004156	Soil	MPAINRRTTTLVAAAFLVGTIAAGSGSLRAAWEPIARFVSLQDGPKPASANVLSEHEIAALAGMEPQSQAELLLERSINHYRGANAQIAARVDRWRGRITLGDRLHN
Ga0062589_1006751461	3300004156	Soil	MRTISRRTSTLAAAAFLLGMIAAGSGTLRAAWEPILRFVTLQDPPKPASANVLSEHEIEALDGMPAQSQAELLLERAINHYSGANKQIAARVDGWRGHITLGGRLHD
Ga0062590_1006195262	3300004157	Soil	MGSINWRTTTLAAAAFLLGSFAAGSGTLRAAWEPIVRFVSLQDPPKPASANVLSEHEIEVLDEMSPQNQAELLLERAINHYRGANDQIAARVGSWRGRISLG
Ga0063356_1027639531	3300004463	Arabidopsis Thaliana Rhizosphere	MVWQGTRLARIVQVQSTPWRTTALAATAFLLGMIAAGSGTLGAAWEPIARLIRLEDPPRPASANVLSEHEISVLDEMPPQNQAELLL
Ga0062592_1005414561	3300004480	Soil	MSASNWRGITVGVAAFFLGTIATGSGTLRAAWEPLARVIGLEEQRTPASANVLSEHEAEALDEMSPQSQAELLLERSINHYRGTNEQIAARVNS
Ga0062594_1027123241	3300005093	Soil	MLSPTWRTIAVVATAFILGTIAAGSGSLRAAWMPMARLIGLQDPRTPASANVLSEHEIEVLDTMSPQGQAELLLERSINHYRGANEQIAARVDRWAG
Ga0066684_106069912	3300005179	Soil	MRITGWYTTTLVAAAFVLGSLAAGSGTLRGALEPIARFVSVQDAPRPASANVLSEHEVAALSGMSPQSQAELLLERAINHYAGAGD
Ga0065707_103638091	3300005295	Switchgrass Rhizosphere	MRTIGWRTTTLAAAAFLLGTIAAGSGTLRAAWEPIVRLVTLQDPPKPASANVLSEHEIAALGEMSPQNQAELLLERAINHYRGANDQIAARVGGWRGRITLGG
Ga0070676_102278271	3300005328	Miscanthus Rhizosphere	MRISSWRTTSLAAAAFLLGTIAAGSGTLRAGWEPIARLIRLEDPPSPASANVLSEHEIAVLDETPPQSQAELLLERS
Ga0066388_1029849561	3300005332	Tropical Forest Soil	MSGSNWRTIVLVAFAFILGTIAAGAGSLSAAWTPVARLIGLQEARVPSSANVFSEHEIESLDAMSPQSQAELLLERSINHYRGANDQ
Ga0068869_1001035761	3300005334	Miscanthus Rhizosphere	MSASNWRGITVGVAAFSLGTIATGSGTLRAAWEPLARVIGLEEQRTPASANVLSEHEAEARDEMSPQSQAELLLERSINHYRGANEQIAARVNSWRGHIELTARLSN
Ga0070666_108337972	3300005335	Switchgrass Rhizosphere	MRISSWRTTSLAAAAFLLGTIAAGSGTLRAAWEPIARLIRLEDPPSPASANVLSEHEIAVLDETPPQSQAELLLERSINHYRGANEQIAARVG
Ga0070680_1004551691	3300005336	Corn Rhizosphere	MRTFNWRVTTLAAAAFLLGMIAAGSGTLRAAWEPIARLVTLQDPPKPASANVLSEHEIEALDGAPPQSQAELLLERAINHYSGANDQIAARVAGWRGHITMG
Ga0070660_1017379261	3300005339	Corn Rhizosphere	MSASNWRGITVGVAAFFLGTIATGSGTLRAAWEPLARVIGLEEQRTPASANVLSEHEAEARDEMSPQSQAELLLERSINHYRGANEQIAARVNSWRGHIELTA
Ga0070692_112737391	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MRTIHWRTTAVAAAAFLLGSIAAGSGSLRAAWEPIARFVSLQDAPRPASANVLSEHEISTLDDMPAQSQAELL
Ga0070669_1013462912	3300005353	Switchgrass Rhizosphere	MARSNWRTVALVAAAFMVGTIVAGGGSLGAAWAPVARLIGLQDPPVPASANVLSEHEIEVLDGMPPQNQAELLLERSINHYRGANEQIAQRV
Ga0070675_1000951213	3300005354	Miscanthus Rhizosphere	MRSITWRTTSLVAAAFFLGSIAAGSGTLGAAWEPIARFVSLRDAPQPASANVLSEHEIEGLDAMEPQHQAELLLERSINHYQGANEQIAARVKTW
Ga0070673_1003525341	3300005364	Switchgrass Rhizosphere	MRISSWRTTSLAAAAFLLGTIAAGSGTLRAAWEPIARLIRLEDPPSPASANVLSEHEIAVLDETPPQSQAELLLERSINHYRGAN
Ga0070688_1013924251	3300005365	Switchgrass Rhizosphere	VKHSNWRTVALVAIAFIVGTIVAGSGSLRAAWTPVARFIGPQDPPTPASANVLSEHEVEALDSMPAQSQAELLLERSINHYRGANEEI
Ga0070700_1010413052	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRTFNWRVTTLAAAAFLLGMIAAGSGTLRAAWEPIARLVTLQDPPKPASANVLSEHEIEALDGAPPQSQAELLLERAINHYSGANDQIAARVAGWRGQ
Ga0070694_1002080693	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MGMSSVNWRTTSLVAAAFLLGSIAAGSGTLRAAWEPIARLVSLRDAPQPASANVLSDHEIEALDGMPPQSQATLLLE
Ga0070694_1013727211	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MRTFNWRVTTLAAAAFLLGMIAAGSGTLRAAWEPIARLVTLQDPPKPASANVLSEHEIEALDGAPPQSQAELLLERAINHYSGANDQIAARVAGWRGHITM
Ga0070708_1009030091	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MHRSHWWTTSLAVAAFLLGTIVAGSGSLRAAWEPIARVIGLDGQRTPASASVLSEHEIEGLDGMTPQQQAELLLERSI
Ga0066686_101882881	3300005446	Soil	MRATRWYTTTLAAAAFVLGTLAAGSGTLGGVWEPLARFVSLQDAPRPASANVLSEHELAALSTLPPQSQAELLL
Ga0070663_1016464622	3300005455	Corn Rhizosphere	MRISSWRTTSLAAAAFLLGTIAAGSGTLRAAWEPIARLIRLEDPPSPASANVLSEHEIAVLDETPPQSQAELLLERSINHYRGANEQIAARVGRWRGRIELNERL
Ga0070662_1008437992	3300005457	Corn Rhizosphere	MRTFNWRVTTLAAAAFLLGMIAAGSGTLRAAWEPIARFVTLQDPPKPASANVLSEHEIEALDGAPPQSQAELLLERAINHYSGANDQIAARVAGWRGHI
Ga0068867_1004524561	3300005459	Miscanthus Rhizosphere	MRTFNWRVTTLAAAAFLLGMIAAGSGTLRAAWEPIARLVTLQDPPKPASANVLSEHEIEALDGAPPQSQAELLLERAINHYSGANDQIAARVAGWRGHIT
Ga0070707_1007068511	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRISNWRTTTLAAAAFLLGSIAAGSGSLRAAWEPIARFISLEDPPSPASANILSEHEVTVLDETSPQSQAELLLERSINHYRGANEQIA
Ga0070707_1008456791	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRTISWRTTTLAAAAFLLGTIAAGSGTLRAAWEPIVRFVSLQDAPKPASANVLSEHEIAALGEMSPQNQAELLLERAINHYRGANDQI
Ga0070741_105055232	3300005529	Surface Soil	MRMPTGPTFSTFSTGKATLLAALAFVMGTIAAGSGTLGAAWEPIARMISQEPPRAASANVLSEHEIEALDSMPPQGQAELLLERSINHYAG
Ga0070684_1016516651	3300005535	Corn Rhizosphere	MNGSNWRTIVVVAFAFILGTIAAGAGSLSAAWTPVARFIGLQDAPVPSSANVFSEHEIEALDAMRPQSQAELLLERSINHYRG
Ga0068853_1023162162	3300005539	Corn Rhizosphere	MRHLDARTATVAAAAFLCGTIAAGSGTLRAASESLARFVSLQDPPHPASAGVLSEHETAVLGSMPPQHQAELLLERAINHYAGAND
Ga0070695_1016909071	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MRISNWRTTTLAATAFLLGSIAAGSGSLRAAWEPIARFISLEDPPSPASANVLSEHEATVLDDASPQSQAELLLERSINHYRGANEQIAARVGRW
Ga0070696_1012070142	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MARSNWRTGALVAAAFLVGTIVASGGSLGAAWAPVARLIGLQDRPVPASANVLSEHEIEALDAMPPQSQAELLLERSINHYRGANEQIAQRV
Ga0068857_1020858631	3300005577	Corn Rhizosphere	MSASNWRGITVGVAAFFLGTIATGSGTLRAAWEPLARVIGLEEQRTPASANVLSEHEAEALDEMSPQSQAELLLERSINHYRGANEQIAARVNSWRGHIELTARLSNLFTT
Ga0068859_1021479531	3300005617	Switchgrass Rhizosphere	MSASNWRGITVGVAAFFLGTIATGSGTLRAAWEPLARVIGLEEQRTPASANVLSEHEAEALDEMSPQSQAELLLERSINHYRGANEQIAARVNSWRGHIELTARLSNLFT
Ga0066905_1007569852	3300005713	Tropical Forest Soil	VCAAFLLGGLAAGGSLRAAWVPIARVIGLDVQWTPTDVLSADEFDELDEMTPQNQAELLLERSINHYRGANEAIAARVKSW
Ga0066903_1035507211	3300005764	Tropical Forest Soil	MQGMSVRTMTFVGAAFMLGTIAAGSGSLRAALLPVARLIGLYDPPIAASANVLSEHEIERLDAMEPQHQAELLLERAINHYRGANEQIAARVDRWTGHLVLNGRLNSLFTTA
Ga0068870_105198562	3300005840	Miscanthus Rhizosphere	MPNVGWRTTALTVTAFLLGTIAAGSGSLRAAWEPIARFVSLQDAPKAASASVLSEHEIEALGSMPPQSQAELLLERSINHYSGA
Ga0068870_112872992	3300005840	Miscanthus Rhizosphere	MRTFNWRVTTLAAAAFLLGMIAAGSGTLRAAWEPIARLVTLQDPPKPASANVLSEHEIEALDGAPPQSQAELLLERAINHYSGANDQI
Ga0097621_1008658621	3300006237	Miscanthus Rhizosphere	MSASSFGVRSTVLAAAAFALGTIAAGYGSLEAAWQPVARAIGLTDPPVPSSANVLSEHETEALDGMSPQAQAELLLERAINHYAGANEQIAARVAGWHG
Ga0068871_1009294662	3300006358	Miscanthus Rhizosphere	VNAANWRTIVLVAFAFILGTIVAGAGSLSAAWTPVARLIGLQDARVPSSANVFSEHEIEGLDGMAPQSQAELLLERSINHYRG
Ga0075428_1007558212	3300006844	Populus Rhizosphere	MVRSNWRTVALVAAAFILGTIAAGGGSLRAAWAPMARLIGLQDPPVPASANVLSEHEIEALDDMPPQSQAELLLERSINHYRGANEQIAQRVDSWNGRLKIE
Ga0075433_105781072	3300006852	Populus Rhizosphere	VSAFLLGTIAAGSGALAAAWEPIARVIGLDAQRTPASANVLSEHEIEGLDEMAPQQQAELLLERAINHYSGANEQIAAR
Ga0075433_118653681	3300006852	Populus Rhizosphere	MRISSWRTTTLAATAFLLGSIAAGSGSLRAAWEPIARFISLEDPPSPASANILSEHEVTVLDETPPQSQAELLLERSINHYRGANEQ
Ga0075425_1023571311	3300006854	Populus Rhizosphere	MARSNWRTVALVAAAFVLGTIAAGGGSLGAAWAPVARLIGLQDPPVPASANVLSEHEIEALDAMPPQSQAELLLERSINHYRGANEQLAQRV
Ga0075424_1018227501	3300006904	Populus Rhizosphere	MSTSPITMRSNWRTTTLVATAFLLGTIAAGTGGLRAAWEPLARFISLEDPPRPASANVLSEHEIDVLDGMPPQSQAEL
Ga0075424_1022856481	3300006904	Populus Rhizosphere	MRRPNWRTVVLVAAAFVLGTIVAGGNSLSAAWAPVARLIGLQDQPVPASANLLSEHEIETLDAMPAQSQAELLLERSINHYRGANEQIAQRVDGWKGQLKIEGRLNELFTT
Ga0105245_112541782	3300009098	Miscanthus Rhizosphere	MPAINRRTTTLVAAAFLVGTIAAGSGSLRAAWEPIARFVSLQDGPKPASANVLSEHEVVALNDMPAQSQAELLLERAINHYSGANDQ
Ga0105245_125777271	3300009098	Miscanthus Rhizosphere	MGMSSVNWRTTSLVAAAFLLGSIAAGSGTLRAAWEPIARLVSLRDAPQPASANVLSDHEIEALDGMPPQSQATLLLERSINHYRGANEE
Ga0114129_104834903	3300009147	Populus Rhizosphere	MGLVIAAFLLGTFAAGSGTLRAARLRQGFGEASLHLIARVIGLGEQWTPASANVLSEHEIEALDGMPPQSQAELLLERSINHYRGANEQIAGRVRGWRGR
Ga0105243_111689932	3300009148	Miscanthus Rhizosphere	MRTMNWRTTTLASAAFLLGTIAAGPGSLRAAWEPIARFVRLQDPPKPASANVLSEHEVVELNAMPAQSQAELLLERAINHYRG
Ga0075423_131386531	3300009162	Populus Rhizosphere	MARSNWRTVALVAAAFIVGTIVAGGGSLGAAWAPVARLIGLQDPPVPASANVLSEHEIEVLDGMPPQNQAELLLERSINHYRGANEQIAQRVDSWN
Ga0105249_120395771	3300009553	Switchgrass Rhizosphere	MRISNWRTTSLAATAFLLGTIAAGSGSLRAAWEPIARLIRLEDPPSPASANVLSEHEITVLDETPPQSQAELLLERSINHYRGANEQIAARVGAWRGRIELNERLHNLFLTAIN
Ga0105073_10231902	3300009802	Groundwater Sand	MRTIGWRTTTLAATAFLLGTIAAGSGTLRAAWEPIVRLVSLQDPPKPASANVLSEHEIAALGEMSPQNQAELLLERAINHYKGANHQIAARV
Ga0126310_115969791	3300010044	Serpentine Soil	MLAGAAFVLGTVAAGSGNLRAAWEPIARLVSLQDPPKAASANVLSEHETEALDGMPPQSQAELLLERALNHYAGASSQIAARVDAWRGHIRMEARLNEL
Ga0126382_103614961	3300010047	Tropical Forest Soil	VGSQSRAIPALATNGVIIGSVAGSSWRTVVLVAIAFMLGAFVAGSESLRAAWIPVARLIGLGDQPVPASANVLSEHEIEALDTMPPQSQAELLLERSINHYRGANEQIAQRVD
Ga0126382_104097981	3300010047	Tropical Forest Soil	MGSTDWRATSLVCAAFLLGGLAAGGSLRAAWVPIARVIGLDVQWTPTDVLSADEFDELDEMTPQNQAELLLERSINHY
Ga0126382_123649091	3300010047	Tropical Forest Soil	MQSNWRTTSLVAVAFVLGTIAAGSGSLSAAWEPIARVIGLSDQRTPASANVLSEHEIETLDELSPQGQAELLLERSINHYQGANDE
Ga0134071_103957541	3300010336	Grasslands Soil	MRTIHWRTTTLAAAAFLLGTIAAGSGSLRAAWEPIARFVSLQDTPKAASANVLSEHEIGALSGMPPQSQAELLLERAINHYRGA
Ga0126379_105045042	3300010366	Tropical Forest Soil	MGWRTTSVAACAFLLGTVAVGGGTLRAGWEPISRFIGLEQPPTPSSANVLSEHEIDALDGMAPQQQAELLLERSINHYRGANEQIAVRVTKWRGRI
Ga0134128_127473441	3300010373	Terrestrial Soil	MARSNWRTGALVAAAFLVGTIVASGGSLGAAWAPVARLIGLQDRPVPASANVLSEHEIEALDAMPPQSQAELLLERSINHYRGANEQIAQRVDSWAGQVKI
Ga0134124_121431821	3300010397	Terrestrial Soil	MRTIHWRTITLVATAFLLGSIAAGSGSLRAAWEPIARFVSLQDPPRPASANVLSEHEISVLADMPAQSQAELLLERAINHYRGANDQIA
Ga0134122_124750731	3300010400	Terrestrial Soil	MRISNWRTTTLAATAFLLGSIAAGSGSLRAAWEPIARFISLEDPPSPASANVLSEHEATALDDASPQSQAELLLER
Ga0134121_109019722	3300010401	Terrestrial Soil	MPAINRRTTTLVAAAFLVGTIAAGSGSLRAAWEPIARFVSLQDGPKPASANVLSEHEIAALGGMEPQSQAELLLERSINHY
Ga0134121_121867832	3300010401	Terrestrial Soil	MARSNWRTGALVAAAFLVGTIVASGGSLGAAWAPVARLIGLQDRPVPASANVLSEHEIEALDAMPPQSQAELLLERSINHYRGAN
Ga0137457_11412412	3300011443	Soil	MRSINWRTTTLAAAAFLLGSIAAGSGTLRAAWEPIVRFVSLQDAPKPASANVLSEHEIAVLDDMSPQNQAELLLERAINHYRGANDQIAARVASWRGRITLDGRLN
Ga0137389_108795551	3300012096	Vadose Zone Soil	MRTISWRTTTLAAAAFLLGTIAAGSGTLRAAWEPIARFVSLQEAARPASANVLSEHEIAALSGMPPQSQAELLLERAINHYRGANAQIAARVDSWRGHITL
Ga0137376_103071991	3300012208	Vadose Zone Soil	MRATRWYVTTLAAAAFVLGTLAAGAGTLRGAWEPLARFVSLQDAPRPASANVLSEHELAALSTLPPQSQAELLLERAINHYAGANDQI
Ga0137367_108940911	3300012353	Vadose Zone Soil	MRATRWYTTTLAAAAFVLGTLAAGSGTLRGAWEPLARFVSLQDAPRPASANVLSEHELAALSTLPPQSQAELLLERAINHYAGAN
Ga0157350_10424741	3300012499	Unplanted Soil	MRRSHWWTTSLAVSAFVLGTIAAGSGSLGAAWEPIARVIGLDGQRTPASANVLSEHEIEGLDDMEPQHQAELLLERSINHYSGANEQIAARVDRWR
Ga0137397_106453242	3300012685	Vadose Zone Soil	MMVAMSWRTTSLAASAFMLGAMAAGAGSLRAAWEPMARFIGLDQPPAAASANVLSEHEIDALDGMPPQQQAELLLERSINHYRGANAQIAARVTKWRGRITVDN
Ga0157306_103482421	3300012912	Soil	MRTFNWRVTTLAAAAFLLGMIAAGSGTLRAAWEPIARLVTLQDPPKPASANVLSEHEIEALDGAPPQSQAELLLERAINHYSGANDQIAARVAGWRGHIAMGGRLHDL
Ga0137394_108709441	3300012922	Vadose Zone Soil	MSWRTTSLAATAFLLGAIVAGAGSLHAAWEPVARFIGLDQPPTPASANVLSEHEIEGLDAKPPQQQAELLLERSINHYRGANDQIAARVNAWRGRITIEKR
Ga0137394_110566931	3300012922	Vadose Zone Soil	MRISNWRTTTLAATAFLLGSIAAGSGSLRAAWEPIARFISLEDPPSPASANVFSEHEASVLDDASPQSQAELLLERSINHYRGANEQIAARV
Ga0137407_115983111	3300012930	Vadose Zone Soil	LAAAAFVLGTLAAGSGTLRGAWEPLARFVSLQDAPRPASANVLSEHELAALSTLPPQSQAELLLERAINHYAGANDQIAARVNSWRGRITLDERLHNLFV
Ga0164308_107718801	3300012985	Soil	VNAANWRTLVLVAFAFILGTIVAGAGSLSAAWTPVARLIGLQDARVPSSANVFSEHEIEGLDAMRPQSQAELLLERSINHYRGANVQIAQRVDSW
Ga0164305_106980072	3300012989	Soil	VNAANWRTLVLVAFAFILGTIVAGAGSLSAAWTPVARLIGLQDARVPSSANVFSEHEIEGLDGMAPQSQAELLLERSINHYRGANEQIAQRVDDWAGQIKIEGRLNELFTT
Ga0157380_101194391	3300014326	Switchgrass Rhizosphere	MRHSDWRTTALAATAFLLGTIAAGSGNLRAAWEPIARFIRLEDPPKPASANVLSEHEIAILDEMTPQSQAELLLERSINHYSGANEQIAARVLRWRGEL
Ga0137411_12500052	3300015052	Vadose Zone Soil	MPTINRRTTALVATAFLLGTIAAGSGSLRAAWEPIARFVSLQDAPKAASANVLSEHEISVLAGMPPQSQAELLLERAINHYSGANRQI
Ga0132258_132863151	3300015371	Arabidopsis Rhizosphere	MLSPASRTKVLVVIAFVLGGVAAGTGSLRAAWEPIARIIGLTQPPVAASANVLSEHEIETLDSAPPQAQAELLLERSVNHYRGANEQIALRLR
Ga0132256_1035357961	3300015372	Arabidopsis Rhizosphere	MPTAAGRTKVLLVIAFLLGGVAAGTGSLRAAWEPLARIIGLTQPPVAASANVLSEHEIEALDSALPQAQAELLLERSVNHYRGANDQI
Ga0132255_1004462414	3300015374	Arabidopsis Rhizosphere	VLEIACFRAGIHLALDPHRMGSINWRTTTLAAAAFLLGSFAAGSGTLRAAWEPIVRFVSLQDPPKPASANVLSEHEIEVLDEMTPQNQADLLLERAVNHYRGANDQIA
Ga0132255_1058679051	3300015374	Arabidopsis Rhizosphere	MARSNWRTGALVAAAFLVGTIVASGGSLGAAWAPVARLIGLQDRPVPASANVLSEHEIEALDAMPPQSQAELLLERSINHYRGANEQIAQRVDFWNGQLKLEGRLH
Ga0134069_11393241	3300017654	Grasslands Soil	MRATRWYTTTLAAAAFVLGTLAAGSGTLRGAWEPLARFVSLQDAPRPASANVLSEHELAALSTLPPQSQAELLLERAINHYAGANDQIAARVNSWRGRITLDERLNN
Ga0184638_10837691	3300018052	Groundwater Sediment	TLAAAAFLLGTIAAGPGTLRAAWEPIVRFVSLQDAPKPASANVLSEHEIAALGEMSPQNQAELLLERAINH
Ga0190270_120529641	3300018469	Soil	MRAIDWRTTTLAATAFLLGSIAAGSGTLRAAWEPIVRFVSLQDAPKPASANVLSEHEIAVLAEMSPQNQAELLLERAINHYRGANDQIAAR
Ga0193707_10770872	3300019881	Soil	MRISNWRTTSLVATAFLIGTIAAGSGSLRAAWEPIARLIRLEDPPSPASANVLSEHEIAVLDEAPPQSQAELLLERSINHYRGANEQIAARVGRWRGHI
Ga0207643_108934051	3300025908	Miscanthus Rhizosphere	MLSPTWRTIAVVATAFILGTIAAGSGSLRAAWMPMARLIGLQDPRTPASANVLSEHEIEVLDTMSPQGQAELLLERSIN
Ga0207654_111549612	3300025911	Corn Rhizosphere	MGMSSVNWRTTSLVAAAFLLGSIAAGSGTLRAAWEPIARLVSLRDAPQPASANVLSDHEIEALDGMPPQSQATLLLERSINHYRGANEEIARRVGG
Ga0207660_103861871	3300025917	Corn Rhizosphere	MRTFNWRVTTLAAAAFLLGMIAAGSGTLRAAWEPIARLVTLQDPPKPASANVLSEHEIEALDGAPPQSQAELLLERAINHYSGANDQIAARVAGWRGHITMGGRLHDLFM
Ga0207646_105244732	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRISNWRTTTLAAAAFLLGSIAAGSGSLRAAWEPIARFISLEDPPSPASANILSEHEVTVLDETSPQSQAELLLERSINHYAGANEQIVPRVKRWRGKLTLNDRLN
Ga0207709_101532372	3300025935	Miscanthus Rhizosphere	MRTFNWRVTTLAAAAFLLGMIAAGSGTLRAAWEPIARLVTLQDPPKPASANVLSEHEIEALDGAPPQSQAELLLERAINHYSGANDQIAARVAGWRG
Ga0207689_101167141	3300025942	Miscanthus Rhizosphere	MSASNWRGITVGVAAFSLGTIATGSGTLRAAWEPLARVIGLEEQRTPASANVLSEHEAEARDEMSPQSQAELLLERSINHYRGANEQIAARVNSWRGHIELTARLSNLFTTAINSDDL
Ga0207668_116613201	3300025972	Switchgrass Rhizosphere	VFHEAARFRAGIQLAHATRMRSITWRTTSLVAAAFFLGSIAAGSGTLGAAWEPIARFVSLRDAPQPASANVLSEHEIEGLDGMTPQSQAELLLERSINHYKGANEQIAARV
Ga0207639_120512762	3300026041	Corn Rhizosphere	MRHLDARTATVAAAAFLCGTIAAGSGTLRAASESLARFVSLQDPPHPASAGVLSEHETAVLGSMPPQHQAELLLERAINHYAGANDEI
Ga0207708_100133661	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MPAAARFRAGIGLAPAARMRSINWRTTSLVSAAFLLGSFAAGSGTLGAAWEPIARFVTLGDAPQPASANVLSEHEIEVLDGMTPQSQAELLLERSINHYQGANEQIAARVA
Ga0207708_101515202	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MRTFNWRVTTLAAAAFLLGMIAAGSGTLRAAWEPIARLVTLQDPPKPASANVLSEHEIEALDGAPPQSQAELLLERAINHYSGANDQIAAR
Ga0207648_112830891	3300026089	Miscanthus Rhizosphere	MRISSWRTTSLAAAAFLLGTIAAGSGTLRAAWEPIARLIRLEDPPSPASANVLSEHEIAVLDETPPQSQAELLLERSINHYRGANEQIAARVGRWRGRIELNERLHNLFLT
Ga0207675_1003792422	3300026118	Switchgrass Rhizosphere	MRTFNWRVTTLAAAAFLLGMIAAGSGTLRAAWEPIARLVTLQDPPKPASANVLSEHEIEALDGAPPQSQAELLLE
Ga0209472_12221421	3300026323	Soil	MRITGRYTTTLVAAAFVLGSLAAGSGTLRGALEPIARFVSVQDAPRPASANVLSEHEVAALSGMSPQSQAELLLERAINHYAGAGDQIAARVNGWRGRITLNERLNNL
Ga0268265_102475263	3300028380	Switchgrass Rhizosphere	MARSNWRTVALVAAAFMVGTIVAGGGSLGAAWAPVARLIGLQDPPVPASANVLSEHEIEVLDGMPPQNQAELLLERSINH
Ga0247818_113672182	3300028589	Soil	MPAAARFRAGIGLAPAARMRSINWRTTSLVSAAFLLGSFAAGSGTLGAAWEPIARFVTLGDAPQPASANVLSEHEIEVLAGMTPQSQAELLLERSINHYQGANEQIAALLTR
Ga0307278_103916062	3300028878	Soil	MKPYRLMSVVIASFVLGAVLFGTGGARAAWEPIARFLSLRGAPQPASANVLSEHEIEGLDSMAPQNQAELLLER
(restricted) Ga0255311_11339361	3300031150	Sandy Soil	MHVPASLGAGTGLANPHGMRRSQWWTTSLAVTAFLLGTIAAGSGSLRAAWEPIARVIGLDAQRTPASANVLSEHEIEGLDEMAPQNQAELLLERSINH
Ga0307468_1009850611	3300031740	Hardwood Forest Soil	MRTFHWRTITLVATAFLLGSIAAGSGSLRAAWEPIARFVSLQDPPRAASANVLSEHEISVLADMPAQSQAELLL
Ga0307468_1015546882	3300031740	Hardwood Forest Soil	MSTSNWRGVTVGVAAFLLGTIAAGSGTLRAAWEPIARVIGLEEQRTPASANVFSEHEAEALDEMSPQGQAELLLERSINHY
Ga0310892_106204071	3300031858	Soil	MVWQGTRLARIVQVQSTPWRTTALAATAFLLGMIAAGSGTLGAAWEPIARLIRLEDPPRPASANVLSEHEISVLDEMPPQNQAELLLERSINH
Ga0306922_119799742	3300032001	Soil	MRVTPRTTILATSAFLCGMAAAGSGTLGAAWEPIARLITLQDPPRPASANVLSEHEIEGLDGMSPQAQATLLLERSINHYRGANEQIAARVGSWHGQVKLDDRLNNL
Ga0310890_104551352	3300032075	Soil	MSASNWRGITVGVAAFSLGTIATGSGTLRAAWEPLARVIGLEEQRTPASANVLSEHEAEALDEMSPQSQAELLLERSINHYRGANEQIAARVNSWRDISSSLRVSVTSSQLRSTPTTLR
Ga0315910_104417402	3300032144	Soil	MSTSNWRGVTVGVAAFLLGTIAAGSGTLRAAWEPIARVIGLEEQRTPASANVFSEHEAEALDEMSPQSQAELLLERSINHYRGANEQIAARVDRWRGH
Ga0307471_1003051271	3300032180	Hardwood Forest Soil	MRSISWRTTSLVAAAFLLGSIAAGSGTLGAAWEPIARFVSLRDAPQPASANVLSDHEIEALDGMPPQSQATLL
Ga0310896_103761361	3300032211	Soil	MGSINWRTTTLAAAAFLLGSFAAGSGTLRAAWEPIVRFVSLQDPPKPASANVLSEHEIEVLDEMSPQNQAELLLERA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters