Metagenome / Metatranscriptome Family F078681

Basic Information
Family ID	F078681
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	48 residues
Representative Sequence	GRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGVAIPTVDVPVVTPVAG
Number of Associated Samples	94
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	1.72 %
% of genes from short scaffolds (< 2000 bps)	0.86 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Most Common Taxonomy
Group	Unclassified (98.276 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.138 % of family members)
Environment Ontology (ENVO)	Unclassified (26.724 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.241 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.95% β-sheet: 5.26% Coil/Unstructured: 90.79%
Feature Viewer

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Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01979	Amidohydro_1	32.76
PF13147	Obsolete Pfam Family	10.34
PF05345	He_PIG	2.59
PF00877	NLPC_P60	1.72
PF00932	LTD	0.86
PF07883	Cupin_2	0.86
PF14518	Haem_oxygenas_2	0.86
PF08402	TOBE_2	0.86
PF07498	Rho_N	0.86
PF03176	MMPL	0.86
PF00480	ROK	0.86
PF12680	SnoaL_2	0.86
PF01636	APH	0.86
PF00005	ABC_tran	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	1.72
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.72
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.86
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.86

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.28 %
All Organisms	root	All Organisms	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.28 %
cellular organisms	root	All Organisms → cellular organisms	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.28 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.72 %

Scaffold	Taxonomy	Length	IMG/M Link
3300004114\|Ga0062593_100238896	All Organisms → cellular organisms → Bacteria	1489	Open in IMG/M
3300012208\|Ga0137376_10041754	All Organisms → cellular organisms → Bacteria	3711	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.38%
Host-Associated	Host-Associated	8.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.07%
Plants	Host-Associated → Plants	8.62%
Aquatic	Environmental → Aquatic	4.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.03%
Freshwater	Environmental → Aquatic → Freshwater	2.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.59%
Sediment	Environmental → Aquatic → Sediment	1.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.59%
Loam	Environmental → Terrestrial → Soil → Loam	8.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.31%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.72%
Sand	Environmental → Terrestrial → Soil → Sand	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.86%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.24%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.34%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.59%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.72%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.86%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	18.10%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	9.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.59%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.72%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.72%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_01994050	2199352025	Soil	VTLLGRFDRHLLLASGEAVEVAIDPRLLHFFDLETGAAISRVGVPVATPVAG
JGI10214J12806_109228471	3300000891	Soil	GEAVEVAIDPRLLHFFDLETGAAIPRVEVRVAAEVAG*
JGI10216J12902_1000959501	3300000956	Soil	RFDRHLLLTPGEAVEVAIDPRLLHFFDLETGAAIPRVEVPVAAEVAG*
JGI10216J12902_1084371451	3300000956	Soil	GEAVEVAIDPRLLHFFDLETGIAIPRVAVPATAPVAG*
JGI10216J12902_1133358332	3300000956	Soil	RHLLLTPGEAVEVAIDPHLLHFFDLETGIAIPKSVDAPVAAGVG*
JGI10216J12902_1152980181	3300000956	Soil	HLLLSPGEAVEVAIDPQLLHFFDLETGAAIPTVEVPVAAGVVG*
JGI10216J12902_1154863481	3300000956	Soil	ERSVTLLGRFDRHLLLAPDEAVEVALDPRLLHFFDLETGLALPAADVPAVAGVAG*
JGI10216J12902_1182607982	3300000956	Soil	HLLLAPGEAVEVAIDPRSLHFFDLETGVALPTADVPAVAGVVG*
JGI10216J12902_1250279531	3300000956	Soil	HLLLSPGEAVEVAIDPRLLHFFDLETGVTIPTVDVPVAAQVVR*
A1565W1_111838933	3300001536	Permafrost	VVEVAIDPRLLHFFDLETGVAIPTVDVPVAAAEVAT*
A10PFW1_107766721	3300001538	Permafrost	VTLLGRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGVAIPTVEVPVVAPVAS*
Ga0063454_1000112044	3300004081	Soil	LLGRFDRHLLLTPGEAVEVALDPRLLHFFDLDTGLALPTADVQAVAGVAG*
Ga0062593_1002388961	3300004114	Soil	LTPGEAVEVAIDPRLLHFFDLETGAAIPRVEVRVAAEVAG*
Ga0062593_1004784452	3300004114	Soil	LGVEDLERSVTLLGRFDRHLLLSPGEAVEVAIDPRLLHFFDLETGGAIPKREVPLTAEVAH*
Ga0062593_1012547342	3300004114	Soil	GRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGVAIPTVDVPVVTPVAG*
Ga0063455_1006283142	3300004153	Soil	GRFDRHLLLTPGEAVEVAIDPRLLHFFDLETGLALPTADLPAVAGVAG*
Ga0062590_1025565602	3300004157	Soil	LERSVTLLGRFDRHLLLTPGEAVEVAIDPRLLHFFDLETGAALPTSDVPAVAGVAG*
Ga0066398_101976382	3300004268	Tropical Forest Soil	DRHLLLTPGEAVEVAIDPRLLHFFDLETGAALPAADVPAVAGVVG*
Ga0062595_1001429762	3300004479	Soil	VEDLERSVTLLGRFDRHLLLSPGEAVEVALDPRLLHFFDLETGLALPAADVPAVAGVAG*
Ga0062595_1004715951	3300004479	Soil	RFDRHLLLTPGEAVDVAIDPHLLHFFDLETGIALPSAVDAPVPAGIAG*
Ga0062595_1005224501	3300004479	Soil	RFDRHLLLTPGEAVDVAIDPHLLHFFDLESGITLPSVVEAPVAAGVTG*
Ga0062592_1011179951	3300004480	Soil	LGRFDRHLLLTPGEAVEVAIDPRLLHFFDLETGAAIPRAEVRVAAEVAG*
Ga0062594_1005820622	3300005093	Soil	RFDRHLLLTPGEAVEVAIDPRLLHFFDLETGSALPTADVQAVAGVAG*
Ga0062594_1007086432	3300005093	Soil	RFDRHLLLTPGEAVEVAIDPRLLHFFDLDTGAALPTADVPAVAGVVG*
Ga0062594_1027702802	3300005093	Soil	HAVTLLGRFDRHLLLSPGEAVEVAIDPRLLHFFDLETGVAVPVVEARVPAQVG*
Ga0066684_102866241	3300005179	Soil	DLERSVTLLGRFDRHLLLTPGEAVEVAIDPRLLHFFDLETGGAVPTVDVPVAAGVVG*
Ga0066675_114496171	3300005187	Soil	LTPGEAVEVAIDPRLLHFFDLETGLAIPSAVDTPVPAGVAG*
Ga0070677_106591661	3300005333	Miscanthus Rhizosphere	RFDRHLLLASGEAVEVAIDPRLLHFFDLETGAAISRVGVPVATPVAG*
Ga0070680_1002433961	3300005336	Corn Rhizosphere	RSVTLLGRFDRHLLLASGEAVEVAIDPRLLHFFDLETGAAISRVGVPVATPVAG*
Ga0070682_1004713371	3300005337	Corn Rhizosphere	SLGVEDLERSVTLLGRFDRHLLLTPGEAVEVAIDPRLLHFFDLDTGAALPTADVPAVAGVVG*
Ga0070708_1010493462	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VTLLGRFDRHLLLASGEAVEVAIDPRLLHFFDLETGAAISRVGVPVATPVAG*
Ga0070708_1011672991	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	ERAVTLLGRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGIAIPTVDVPVAAGVVR*
Ga0070662_1013528141	3300005457	Corn Rhizosphere	GGVGDVERAVTLLGRFDRHLLLLPGEAVDVAIDPRLLHFFDLETGASIPTVDVPVAAEVAG*
Ga0066697_106219591	3300005540	Soil	PGEAVDVAIDPHLRHFFDLETGVAIPSVVGAPVAAGVPG*
Ga0070696_1010266782	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	ERSVTLLGRFDRHLLLTPGEAVEVAIDPRLLHFFDLETGLAVPTAAVPAVAGVAG*
Ga0066670_104799481	3300005560	Soil	FLLQPGEAVEVAIDPHRLHFFELDSGAAIEAVDVPVTLEHAAG*
Ga0066670_105294401	3300005560	Soil	VTLLGRFDRHLLLTPGEAVEVAIDPRLLHFFDLETGVAVPTVDVPVAAGVVG*
Ga0066708_100259291	3300005576	Soil	GEAVEVAIDPRLLHFFDLETGVAVPTVDVPVAAGVVG*
Ga0066706_100886751	3300005598	Soil	EAVEVAIDPRLLHFFDLETGVAIPAVDVPVAAEVVS*
Ga0068858_1005956042	3300005842	Switchgrass Rhizosphere	ERSVTLLGRFDRHLLLASGEAVEVAIDPRLLHFFDLETGAAISRVGVPVATPVAG*
Ga0066696_109273592	3300006032	Soil	LLLTPGEAVEVAIDPRLLHFFDLETGLAIPSAVDTPVPAGVAG*
Ga0066656_107485241	3300006034	Soil	GELEQAVTLLGRFDRHLLLTPGEAVDVAIDPHLLHFFDLESGITLPSAVEAPVAAGVTG*
Ga0066656_108250182	3300006034	Soil	LGRFDRHLLLSPGEAVEVAIDPRLLHFFDLETGVAIPTVDVPVAAEVVS*
Ga0066652_1020189621	3300006046	Soil	PGEAVEVAIDPSLLHFFDLETGAALPTVEAPVAAGVVG*
Ga0074054_100217193	3300006579	Soil	LAPGEAVEVAIDPRLLHFFDLETGAAISRVDVPVATPVAG*
Ga0066653_104445211	3300006791	Soil	TLGVEELERSVTLLGRFDRHLLLTPGEAVEVAIDPSLLHFFDLETGLALPTTDVPAVAGVAG*
Ga0066665_108049462	3300006796	Soil	VEDLERSVTLLGRFDRHLLLTPGEAVEVAIDPRLLHFFDLETGAAVPAVAVRVAAGVAG*
Ga0075425_1006414652	3300006854	Populus Rhizosphere	GRFDRHLLLTPGEAVEVAIDPRLLHFFDLETGLALPSADVPAVAGVAG*
Ga0075424_1020035562	3300006904	Populus Rhizosphere	VMLLGRFDRHLLLAPGEAVEVAIDSRLLHFFDLETGAAIPRVEIPVAAEVAG*
Ga0074063_100357321	3300006953	Soil	GRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGAAISRVDVPVATPVAG*
Ga0066709_1032327911	3300009137	Grasslands Soil	EAVEVAIDSRLLHFFDLETGVAVPTVAVPVAAEVAR*
Ga0114129_107890882	3300009147	Populus Rhizosphere	LGRFDRHLLLAPGEAVEVAVDVRLLHFFDLETGVAIPAVHVPAAVQVV*
Ga0105072_10736692	3300009818	Groundwater Sand	GVEDLEQAVTLLGRFDRHLLLAPGEAAEVAIDARLLHFFDLETGVAIPRAEVPVATEVEVAG*
Ga0126314_109849482	3300010042	Serpentine Soil	ERAVTLLGRFDRHLLLLPDEAVEVAIDPRLLHFFDLETGAAIPTVDVPVAAEVAS*
Ga0134111_104558631	3300010329	Grasslands Soil	LSPGEAVEVAIDPRLLHFFDLETGLALPTVDVPVVAGVAG*
Ga0134080_104531212	3300010333	Grasslands Soil	TLLGRFDRHLLLTPGEAVEVAIDPRLLHFFDLGTGLAVPSAVHTPVPAGVAG*
Ga0126376_115394012	3300010359	Tropical Forest Soil	LGRFDRHLLLTPGEAVEVAIDVRLLHFFDLETGAALPTADVPAVAGVAG*
Ga0126372_102461541	3300010360	Tropical Forest Soil	LLGRFDRHLLLTPGEAVEVAIDPRLLHFFDLETGIALPTAAVPAVAGVAG*
Ga0137365_110342791	3300012201	Vadose Zone Soil	PGEAVEVAIDARLLHFFDLETGLAVPTVDVPVAAGVVA*
Ga0137374_105710472	3300012204	Vadose Zone Soil	RHLLLAPGEAVEVAIDPRLLHFFDLETGVAIPTADVPAVAGVAG*
Ga0137376_100417546	3300012208	Vadose Zone Soil	GVEDLERSVTLLGRFDRHLLLTPGEAVEVAIDPRLLHFFDLETGVALSTVDVPAVAGVAG
Ga0137376_107267052	3300012208	Vadose Zone Soil	LAPDEAVEVAIDPRLLHFFDLETGVAIPAVDAPVAAEVAR*
Ga0137367_105495372	3300012353	Vadose Zone Soil	LGVEDLERSVTLLGRFDRHLLLSPGEAVEVAIDPRLLHFFDLETGAAIPMVDVPVAAGVVG*
Ga0137369_101607751	3300012355	Vadose Zone Soil	LGVEDLERSVTLLGRFDRHLLLTPGEAVEVAIDPRLLHFFDLETGLALPTVDVPVAAGVAG*
Ga0137369_111262982	3300012355	Vadose Zone Soil	LLAPGEAVEVAIDPRLLHFFDLETGVAIPTADVPAVAGVAG*
Ga0137375_100257568	3300012360	Vadose Zone Soil	AERSVTLLGRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGVAIPTVDVPVVAPVAS*
Ga0137375_113943252	3300012360	Vadose Zone Soil	LLAPGEAVEVAIDPRLLHFFDLETGVAIPTVDVPVVAPVAS*
Ga0137373_100386738	3300012532	Vadose Zone Soil	VEDLERSVTLLGRFDRHLLLSPGEAVEVAIDPRLLHFFDLETGAAIPTVDVPVTAAGVVA
Ga0137373_106222131	3300012532	Vadose Zone Soil	LGVEDLERSVTLLGRFDRHLLLAPGEAVEVAIDPRLLHVFDLETGAAIPTVDVPVAAGVVG*
Ga0126369_128006801	3300012971	Tropical Forest Soil	AVEVAIDVRLLHFFDFETGAALPTADVPAVAGVAG*
Ga0164304_101264913	3300012986	Soil	ERSVTLLGRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGVSVPMVDVPAVAQVPG*
Ga0164305_118365212	3300012989	Soil	RAVTLLGRFDRHLLLVPGEAVEVAIDPRLLHFFDLETGAAIPTVDVPVVAPVAS*
Ga0157372_121706032	3300013307	Corn Rhizosphere	DRHLLLTPGEAVEVAIDPRLLHFFDLDTGAALPTADVPAVAGVVG*
Ga0134085_105773662	3300015359	Grasslands Soil	VEVAIDPRLLHFFDLETGVAIPLVEVPVAAEVAR*
Ga0132258_107101401	3300015371	Arabidopsis Rhizosphere	RHLLLAPGEAVEVALDPRLLHFFDLETGLALPAADVPAVAGVAG*
Ga0184620_100686701	3300018051	Groundwater Sediment	EAVEVTIDPRLLHFFDLETGVAIPTVDVPVVTPVAG
Ga0184619_100067726	3300018061	Groundwater Sediment	HLLLSPGEAVEVAIDPRLLHFFDLDTGVAVPTVEVPIVAPVAS
Ga0066667_101726443	3300018433	Grasslands Soil	LERSVTLLGRFDRHLLLTPGEAVEVAIDPRLLHFFDLETGAALQTADVQAVAGMAG
Ga0066662_123190902	3300018468	Grasslands Soil	VLGRFDRHLLPTPGEVVEVAIDPRLLHFFDLETGAAVPTVDVRVAAGVAG
Ga0066669_100215195	3300018482	Grasslands Soil	LGVEELERSVTLLGRFDRHLLLTPGEAVEVAIDPRLLHFFDLETGVALPTTDVPAVAGVA
Ga0193718_10013801	3300019999	Soil	TPGEAVEVAIDPRLLHFFDLETGAAISRVDVPVATPVAG
Ga0193745_11132772	3300020059	Soil	ERAVTLLGRFDRHLLLAPDEAVEVAIDPRLLHFFDLETGVAIPTVDVPVAAEVAR
Ga0210382_101454842	3300021080	Groundwater Sediment	FDRHLLLTPGEAVEVAIDPRLLHFFDLETGVALSTVEVPAVAGVAG
Ga0210382_103393672	3300021080	Groundwater Sediment	LLGRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGVAIPTVDAPVVEPVVS
Ga0210382_103607202	3300021080	Groundwater Sediment	ERAVTLLGRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGIAIQMVDVPVVAPVAS
Ga0207653_100948241	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	EAVEVAIDPRLLHFFDLETGAAISRVGVPVATPVAG
Ga0207683_107496631	3300026121	Miscanthus Rhizosphere	RFDRHLLLAPGEAVEVAIDPRLLHFFDLETGVSVPMVDVPAVAQVPG
Ga0209155_11636301	3300026316	Soil	EAVEVAIDPSVLHFFDLETGAALPTVEAPVAAGVVG
Ga0209074_102973221	3300027787	Agricultural Soil	PSLGVEDLERSVTLLGRFDRHLLLTPGEAVEVALDPRLLHFFDLETGLALPTADVHAVAGVAG
Ga0307276_100335161	3300028705	Soil	LGRFDRHLRLAPGEAVEVAIDPRLLHFFDLETGVAIPSVDVPVVTPVAG
Ga0307291_11890552	3300028707	Soil	LGVDDSERSVTLLGRFDRHLLLAPGEVVEVAIDPRLLHFFDLETGAAISRVDLPVATPVA
Ga0307322_100733461	3300028710	Soil	SVTLLGRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGVAIPTVDVPVVTPVAG
Ga0307293_100936832	3300028711	Soil	VVEVAIDPRLLHFFDLESGVAIPMVDVPVVAPVAS
Ga0307311_101578841	3300028716	Soil	DAERSVTLLGRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGVAIPTVDVPVATPVAG
Ga0307298_102294612	3300028717	Soil	LGRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGVAIPTVDVPVVTPVAG
Ga0307307_100421362	3300028718	Soil	RFDRHLLLAPGEAVEVAIDPRLLHFFDLETGVAIPMVDVPVVTPVAG
Ga0307317_100015021	3300028720	Soil	RFDRHLLLAPGEAVEVAIDPRLLHFFDLETGVAIPTVDVPVAAEVVS
Ga0307280_100176371	3300028768	Soil	RHLLLAPGEAVEVAIDPRLLHFFDLETGAAISRVDVPVATPVAG
Ga0307320_104263841	3300028771	Soil	DAERSVTLLGRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGIAIPSVDVPVVAPVAS
Ga0307323_100926871	3300028787	Soil	GEAVEVAIDPRLLHFFDLETGVAIPTVDVPVATPVAG
Ga0307290_101869212	3300028791	Soil	LLLAPGEAVEVAIDPRLLHFFDLETGVAIPTVDVPVAAEVVS
Ga0307284_102402912	3300028799	Soil	DAERSVTLLGRFDRHLLLTPGEAVEVAIDPRLLHFFDLETGVAIPMVDVPAVAPVAS
Ga0307281_101056711	3300028803	Soil	DRHLLLAPGEAVEVAIDPRLLHFFDLETGVAVPTVDVAAVAPVPG
Ga0307305_102115261	3300028807	Soil	GEAVEVAIDPRLLHFFDLESGIAIPMVDVPVVAPVAS
Ga0307302_104394882	3300028814	Soil	DRHLLLTPDEAVEVAIDPRLLHFFDLETGAALSTVDVPAVAGVAG
Ga0307296_102038802	3300028819	Soil	LERAVTLLGRFDRHLLLAPDEAVEVAIDPRLLHFFDLETGVAIPTVDVPVAAEVAR
Ga0307310_100537913	3300028824	Soil	TLLGRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGVAIPTVDVPVATPVAG
Ga0307289_102444251	3300028875	Soil	LLTPGEAVEVAIDPRLLHFFDLETGVALSTVEVPAVAGVAG
Ga0307278_101213461	3300028878	Soil	DDAERSVTLLGRFDRHLLLSPGEAVEVAIDPRLLHFFDLESGVAIPMVDVPVVAPVAS
Ga0307308_101382042	3300028884	Soil	GEAVEVAIDPRLLHFFDLESGVAIPMVDVPVVAPVAS
Ga0307304_100257961	3300028885	Soil	HLLLAPGEAVEVAIDPRLLHFFDLETGVAIPMVDVPVVTPVAG
Ga0307304_106241171	3300028885	Soil	SVTLLGRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGIAIPSVDVPVVAPVAS
Ga0310813_107835701	3300031716	Soil	LGRVDLHLLLTPGEAVEVAIDPRLLHFFDLDTGAALPTADVPAVAGVVG
Ga0307415_1024957071	3300032126	Rhizosphere	EAVEVAIDPRLLHFFDLETGAAIPAVEVPVAAEVVG
Ga0307470_100254161	3300032174	Hardwood Forest Soil	SVTLLGRFDRHLLLAPGEAVEVAIDPRLLHFFDLETGAAISRVDVPVATPVAG
Ga0307472_1002219663	3300032205	Hardwood Forest Soil	RFDRHLLLASGEAVEVAIDPRLLHFFDLETGAAISRVGVPVATPVAG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078681

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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