Metagenome / Metatranscriptome Family F078670

Basic Information
Family ID	F078670
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	59 residues
Representative Sequence	QRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG
Number of Associated Samples	101
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.75 %
% of genes near scaffold ends (potentially truncated)	96.55 %
% of genes from short scaffolds (< 2000 bps)	89.66 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (69.828 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.931 % of family members)
Environment Ontology (ENVO)	Unclassified (40.517 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (62.069 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.07% β-sheet: 0.00% Coil/Unstructured: 55.93%
Feature Viewer

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Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF07883	Cupin_2	7.76
PF03476	MOSC_N	7.76
PF00589	Phage_integrase	6.03
PF10988	DUF2807	1.72
PF12680	SnoaL_2	1.72
PF00702	Hydrolase	0.86
PF01084	Ribosomal_S18	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	7.76
COG0238	Ribosomal protein S18	Translation, ribosomal structure and biogenesis [J]	0.86

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
All Organisms	root	All Organisms	30.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
cellular organisms	root	All Organisms → cellular organisms	30.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	19.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18.97 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	6.03 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.45 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	2.59 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6.03 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	2.59 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.59 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.86 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	2.59 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.59 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	1.72 %
Xanthomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	0.86 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	2.59 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.59 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1.72 %
Xanthomonas phaseoli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas phaseoli	0.86 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Gaiella occulta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	2.59 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.59 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1.72 %
Kribbella soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella soli	0.86 %
Xanthomonas phaseoli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas phaseoli	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_107049598	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300002075\|JGI24738J21930_10107416	Not Available	599	Open in IMG/M
3300003319\|soilL2_10318042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1197	Open in IMG/M
3300003987\|Ga0055471_10022895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1521	Open in IMG/M
3300004006\|Ga0055453_10236538	Not Available	579	Open in IMG/M
3300004157\|Ga0062590_101350054	Not Available	706	Open in IMG/M
3300004463\|Ga0063356_103357566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	690	Open in IMG/M
3300004463\|Ga0063356_105114347	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300004463\|Ga0063356_105984811	Not Available	521	Open in IMG/M
3300005329\|Ga0070683_100287992	Not Available	1562	Open in IMG/M
3300005331\|Ga0070670_102115158	Not Available	519	Open in IMG/M
3300005334\|Ga0068869_100139634	Not Available	1870	Open in IMG/M
3300005336\|Ga0070680_101814553	Not Available	528	Open in IMG/M
3300005339\|Ga0070660_100082137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2530	Open in IMG/M
3300005340\|Ga0070689_100600817	Not Available	953	Open in IMG/M
3300005365\|Ga0070688_100641321	Not Available	817	Open in IMG/M
3300005367\|Ga0070667_100085533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2704	Open in IMG/M
3300005455\|Ga0070663_101267438	Not Available	649	Open in IMG/M
3300005456\|Ga0070678_101050191	Not Available	750	Open in IMG/M
3300005466\|Ga0070685_10734178	Not Available	723	Open in IMG/M
3300005468\|Ga0070707_102200575	Not Available	519	Open in IMG/M
3300005543\|Ga0070672_100142413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella soli	1978	Open in IMG/M
3300005545\|Ga0070695_100365636	Not Available	1085	Open in IMG/M
3300005547\|Ga0070693_100060834	All Organisms → cellular organisms → Bacteria	2193	Open in IMG/M
3300005548\|Ga0070665_101162085	Not Available	783	Open in IMG/M
3300005564\|Ga0070664_100245175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1609	Open in IMG/M
3300005564\|Ga0070664_101431459	Not Available	653	Open in IMG/M
3300005577\|Ga0068857_101679879	Not Available	621	Open in IMG/M
3300005616\|Ga0068852_100194196	All Organisms → cellular organisms → Bacteria	1917	Open in IMG/M
3300005616\|Ga0068852_101591883	Not Available	676	Open in IMG/M
3300005834\|Ga0068851_10095745	Not Available	1569	Open in IMG/M
3300005840\|Ga0068870_10440696	Not Available	857	Open in IMG/M
3300005844\|Ga0068862_100666899	Not Available	1004	Open in IMG/M
3300005844\|Ga0068862_101202399	Not Available	756	Open in IMG/M
3300006058\|Ga0075432_10302326	Not Available	664	Open in IMG/M
3300006605\|Ga0074057_12028057	Not Available	952	Open in IMG/M
3300006845\|Ga0075421_101534681	Not Available	727	Open in IMG/M
3300009081\|Ga0105098_10284789	Not Available	789	Open in IMG/M
3300009094\|Ga0111539_12931596	Not Available	552	Open in IMG/M
3300009094\|Ga0111539_13411158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300009098\|Ga0105245_11938634	Not Available	642	Open in IMG/M
3300009156\|Ga0111538_12817608	Not Available	609	Open in IMG/M
3300009176\|Ga0105242_10197020	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1787	Open in IMG/M
3300009545\|Ga0105237_12771723	Not Available	501	Open in IMG/M
3300009551\|Ga0105238_10104937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	2807	Open in IMG/M
3300009551\|Ga0105238_11546161	Not Available	693	Open in IMG/M
3300009551\|Ga0105238_12905578	Not Available	515	Open in IMG/M
3300010373\|Ga0134128_11758940	Not Available	682	Open in IMG/M
3300010399\|Ga0134127_10312083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1520	Open in IMG/M
3300010399\|Ga0134127_11188536	Not Available	829	Open in IMG/M
3300010400\|Ga0134122_12159305	Not Available	599	Open in IMG/M
3300012481\|Ga0157320_1029301	Not Available	547	Open in IMG/M
3300012892\|Ga0157294_10059803	Not Available	889	Open in IMG/M
3300012897\|Ga0157285_10271513	Not Available	565	Open in IMG/M
3300012914\|Ga0157297_10234864	Not Available	655	Open in IMG/M
3300012915\|Ga0157302_10183983	Not Available	737	Open in IMG/M
3300012958\|Ga0164299_10149235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1291	Open in IMG/M
3300012960\|Ga0164301_10881713	Not Available	692	Open in IMG/M
3300012961\|Ga0164302_10407780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	929	Open in IMG/M
3300012989\|Ga0164305_12240239	Not Available	503	Open in IMG/M
3300013306\|Ga0163162_11664512	Not Available	728	Open in IMG/M
3300014745\|Ga0157377_11360649	Not Available	558	Open in IMG/M
3300014745\|Ga0157377_11530075	Not Available	531	Open in IMG/M
3300015077\|Ga0173483_10041309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1727	Open in IMG/M
3300015200\|Ga0173480_10010756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	3673	Open in IMG/M
3300015372\|Ga0132256_100125523	Not Available	2539	Open in IMG/M
3300015372\|Ga0132256_102418105	Not Available	628	Open in IMG/M
3300015373\|Ga0132257_100023582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	6540	Open in IMG/M
3300017789\|Ga0136617_10522056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	941	Open in IMG/M
3300018476\|Ga0190274_12949711	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300018481\|Ga0190271_10060917	All Organisms → cellular organisms → Bacteria	3277	Open in IMG/M
3300019356\|Ga0173481_10851469	Not Available	509	Open in IMG/M
3300022889\|Ga0247785_1047705	Not Available	536	Open in IMG/M
3300022898\|Ga0247745_1029741	Not Available	811	Open in IMG/M
3300022901\|Ga0247788_1087898	Not Available	606	Open in IMG/M
3300022915\|Ga0247790_10144070	Not Available	610	Open in IMG/M
3300023057\|Ga0247797_1047688	Not Available	611	Open in IMG/M
3300023097\|Ga0247757_10130575	Not Available	803	Open in IMG/M
3300025326\|Ga0209342_10758062	Not Available	769	Open in IMG/M
3300025791\|Ga0210115_1007383	All Organisms → cellular organisms → Bacteria	2708	Open in IMG/M
3300025885\|Ga0207653_10383609	Not Available	550	Open in IMG/M
3300025899\|Ga0207642_10270337	Not Available	973	Open in IMG/M
3300025901\|Ga0207688_10310961	Not Available	965	Open in IMG/M
3300025912\|Ga0207707_10518984	Not Available	1015	Open in IMG/M
3300025921\|Ga0207652_10392396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1252	Open in IMG/M
3300025923\|Ga0207681_11589436	Not Available	547	Open in IMG/M
3300025924\|Ga0207694_11063595	Not Available	685	Open in IMG/M
3300025925\|Ga0207650_10709439	Not Available	850	Open in IMG/M
3300025933\|Ga0207706_10654468	Not Available	900	Open in IMG/M
3300025935\|Ga0207709_11563705	Not Available	548	Open in IMG/M
3300025936\|Ga0207670_10759715	Not Available	806	Open in IMG/M
3300025937\|Ga0207669_10129064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1733	Open in IMG/M
3300025937\|Ga0207669_10521558	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300025938\|Ga0207704_10052704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2468	Open in IMG/M
3300025942\|Ga0207689_11154994	Not Available	652	Open in IMG/M
3300025945\|Ga0207679_10683300	Not Available	930	Open in IMG/M
3300025981\|Ga0207640_11375750	Not Available	632	Open in IMG/M
3300026078\|Ga0207702_11699012	Not Available	624	Open in IMG/M
3300026095\|Ga0207676_12599742	Not Available	502	Open in IMG/M
3300026116\|Ga0207674_11444331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas phaseoli	657	Open in IMG/M
3300026121\|Ga0207683_12006328	Not Available	527	Open in IMG/M
3300026142\|Ga0207698_10220334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1714	Open in IMG/M
3300027880\|Ga0209481_10341181	Not Available	763	Open in IMG/M
3300028587\|Ga0247828_10392712	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300028608\|Ga0247819_11051845	Not Available	517	Open in IMG/M
3300028889\|Ga0247827_10249235	Not Available	1010	Open in IMG/M
3300028889\|Ga0247827_10642808	Not Available	684	Open in IMG/M
3300028889\|Ga0247827_11210582	Not Available	524	Open in IMG/M
3300031852\|Ga0307410_12092243	Not Available	506	Open in IMG/M
3300031996\|Ga0308176_10691643	Not Available	1057	Open in IMG/M
3300032075\|Ga0310890_11019530	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300032421\|Ga0310812_10336908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	674	Open in IMG/M
3300033550\|Ga0247829_10146918	All Organisms → cellular organisms → Bacteria	1832	Open in IMG/M
3300033551\|Ga0247830_10115574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1911	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	50.86%
Environmental	Environmental	49.14%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	50.86%
Terrestrial	Environmental → Terrestrial	44.83%
Aquatic	Environmental → Aquatic	4.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	22.41%
Marine	Environmental → Aquatic → Marine	2.59%
Freshwater	Environmental → Aquatic → Freshwater	1.72%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	19.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.66%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.79%
Loam	Environmental → Terrestrial → Soil → Loam	11.21%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.59%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Ice	Environmental → Aquatic → Freshwater → Ice	0.86%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	19.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.34%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.03%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.86%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.62%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.31%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.45%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.45%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.59%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.86%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.86%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.86%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300004006	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012481	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610	Host-Associated	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300022889	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300023097	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L126-311R-4	Environmental	Open in IMG/M
3300025326	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)	Environmental	Open in IMG/M
3300025791	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1070495982	3300000956	Soil	ERDEREDSWGGPEIRDLESRLRRLETQRMSSDQTRSFSGGFRKLEQEGTRKPQG*
JGI24738J21930_101074162	3300002075	Corn Rhizosphere	EREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG*
soilL2_103180422	3300003319	Sugarcane Root And Bulk Soil	MDEREDAWGGPDMHELEARLRKLETQGGRTGKTGTFSGGFKKLEQEGARRPPAT*
Ga0055471_100228951	3300003987	Natural And Restored Wetlands	EQLLAQRERELDEREDGWGGPDLHELESRLRRLETQRQAAQTGSFSGGFRRLEQEGTRHPPSG*
Ga0055453_102365381	3300004006	Natural And Restored Wetlands	EDGWGGPDLHELESRLRRLETQRQTTQTGSFSGGFRRLEQEGARRPPSK*
Ga0062590_1013500542	3300004157	Soil	EQLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPAG*
Ga0063356_1033575662	3300004463	Arabidopsis Thaliana Rhizosphere	DEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPTG*
Ga0063356_1051143471	3300004463	Arabidopsis Thaliana Rhizosphere	LLAQRERELDEREDSWGGPEIRDLESRLRRLETQRLTGEQATRSFSGGFKKLEQEGTRKPQG*
Ga0063356_1059848112	3300004463	Arabidopsis Thaliana Rhizosphere	LLAQRERELDEREDGWGGTDLHELESRLRRLETQRQTAQTGSFSGGFRRLEQEGSRRPPAT*
Ga0070683_1002879921	3300005329	Corn Rhizosphere	LAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG*
Ga0070670_1021151582	3300005331	Switchgrass Rhizosphere	GGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG*
Ga0068869_1001396345	3300005334	Miscanthus Rhizosphere	PDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG*
Ga0070680_1018145532	3300005336	Corn Rhizosphere	LAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG*
Ga0070660_1000821375	3300005339	Corn Rhizosphere	REQLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG*
Ga0070689_1006008171	3300005340	Switchgrass Rhizosphere	QLLAQRERELDEREDGWGGPDVRELEARLRRLETQRTAREQTQGFSGGFRKLEQDGARRPPST*
Ga0070688_1006413211	3300005365	Switchgrass Rhizosphere	SDAIAAREQLLAQRERELDEREDGWGGPDVRELEARLRRLETQRTALEQTQGFSGGFRKLEQDGARRPPST*
Ga0070667_1000855331	3300005367	Switchgrass Rhizosphere	RERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG*
Ga0070663_1012674382	3300005455	Corn Rhizosphere	QRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG*
Ga0070678_1010501911	3300005456	Miscanthus Rhizosphere	ERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG*
Ga0070685_107341782	3300005466	Switchgrass Rhizosphere	REQLLAQRERELDEREDGWGGPDVRELEARLRRLETQRTAHEQTQGFSGGFRKLEQDGARRPPST*
Ga0070707_1022005752	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	RERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG*
Ga0070672_1001424134	3300005543	Miscanthus Rhizosphere	REQLLAQRERELDEREDGWGGPDVRELEARLRRLETQRTAREQTQGFSGGFRKLEQDGARRPPST*
Ga0070695_1003656362	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	EREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG*
Ga0070693_1000608346	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	LLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG*
Ga0070665_1011620852	3300005548	Switchgrass Rhizosphere	AQRERELDEREDGWGGPDVRELEARLRRLETQRTAHEQTQGFSGGFRKLEQDGARRPPST
Ga0070664_1002451751	3300005564	Corn Rhizosphere	LLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG*
Ga0070664_1014314592	3300005564	Corn Rhizosphere	RERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPSTG*
Ga0068857_1016798792	3300005577	Corn Rhizosphere	DGWGGADLQELESRLRRLETQRQAAQTGSFSGGFRRLEQEGSRRPPSE*
Ga0068852_1001941965	3300005616	Corn Rhizosphere	AQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG
Ga0068852_1015918832	3300005616	Corn Rhizosphere	LAQRERELDEREDGWGGPDVRELEARLRRLETQRTAHEQTQGFSGGFRKLEQDGARRPPST*
Ga0068851_100957454	3300005834	Corn Rhizosphere	GWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG*
Ga0068870_104406961	3300005840	Miscanthus Rhizosphere	EDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPTG*
Ga0068862_1006668992	3300005844	Switchgrass Rhizosphere	QRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGARRPPST*
Ga0068862_1012023992	3300005844	Switchgrass Rhizosphere	QRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG*
Ga0075432_103023261	3300006058	Populus Rhizosphere	REQLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG*
Ga0074057_120280571	3300006605	Soil	DAIAAREQLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG*
Ga0075421_1015346813	3300006845	Populus Rhizosphere	ERELDERDDGWGGADVRELEARLRKLETQRTSRGGTPGFSGGFRRLEQEGTRRPPSD*
Ga0105098_102847891	3300009081	Freshwater Sediment	TAREQLLAQRERELDEREDGWGGPDVRELEARLRRLETQGTALARTQGFSGGFRKLEQEGTRRPPSP*
Ga0111539_129315961	3300009094	Populus Rhizosphere	LDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPAG*
Ga0111539_134111582	3300009094	Populus Rhizosphere	GGPDVRELEARLRRLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG*
Ga0105245_119386341	3300009098	Miscanthus Rhizosphere	RDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG*
Ga0111538_128176081	3300009156	Populus Rhizosphere	DLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPTG*
Ga0105242_101970201	3300009176	Miscanthus Rhizosphere	LAQRERELDEREDGWGGPDLHELESRLRRLETQRQAAQTGGFSGGFRRLEQEGTRHPPSQ
Ga0105237_127717231	3300009545	Corn Rhizosphere	EDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPAG*
Ga0105238_101049376	3300009551	Corn Rhizosphere	SDAIAAREQLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG*
Ga0105238_115461612	3300009551	Corn Rhizosphere	EREDGWGGPDLHELESRLRRLETQRQTAQAGSFSGGFRRLEQEGTRHPPSQ*
Ga0105238_129055782	3300009551	Corn Rhizosphere	QRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPAG*
Ga0134128_117589402	3300010373	Terrestrial Soil	EQLLAQRERELDEREDGWGGPDVRELEARLRRLETQRTAREQTQGFSGGFRKLEQDGARRPPST*
Ga0134127_103120833	3300010399	Terrestrial Soil	LAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGARRPPST*
Ga0134127_111885361	3300010399	Terrestrial Soil	AQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG
Ga0134122_121593051	3300010400	Terrestrial Soil	EQLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG*
Ga0157320_10293012	3300012481	Arabidopsis Rhizosphere	QLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPMG*
Ga0157294_100598031	3300012892	Soil	HSDAIAAREQLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGHTQGFSGGFRKLEQDGTRRPPVG*
Ga0157285_102715131	3300012897	Soil	DVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPTG*
Ga0157297_102348641	3300012914	Soil	REDGWGGADLQELESRLRRLETQRQATQTGSFSGGFRRLEQEGSRRPPPA*
Ga0157302_101839832	3300012915	Soil	DLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPAG*
Ga0164299_101492351	3300012958	Soil	SNATAAREQRLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG*
Ga0164301_108817131	3300012960	Soil	RDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTA*
Ga0164302_104077803	3300012961	Soil	DEREDGWGGADLQELESRLRRLETQRQATQTGSFSGGFRRLEQEGSRRPPPA*
Ga0164305_122402391	3300012989	Soil	AREQLLAQRERELDEREDGWGGPDVRELEARLRRLETQRTALEQTQGFSGGFRKLEQDGARRPPST*
Ga0163162_116645121	3300013306	Switchgrass Rhizosphere	ERELDEREDGWGGPDVRELEARLRRLETQRTAHEQTQGFSGGFRKLEQDGARRPPST*
Ga0157377_113606491	3300014745	Miscanthus Rhizosphere	QLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG*
Ga0157377_115300752	3300014745	Miscanthus Rhizosphere	DEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG*
Ga0173483_100285141	3300015077	Soil	HSDAIAAREQLLAQRERELDERDDGWGGADVRELEARLRRLETQRTSPGGTGFSGGFRRLEQEGTRRPPSD*
Ga0173483_100413091	3300015077	Soil	REQLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTHGFSGGFRKLEQEGTRRPPAG*
Ga0173480_100107565	3300015200	Soil	LAQRERELDERDDGWGGADVRELEARLRKLETQRTSPGGTGFSGGFRRLEQEGTRRPPSD
Ga0132256_1001255231	3300015372	Arabidopsis Rhizosphere	RELDEREDGWGGPDVRELEARLRRLETQRTAHEQTQGFSGGFRKLEQDGARRPPST*
Ga0132256_1024181051	3300015372	Arabidopsis Rhizosphere	DGWGGPDVRELEARLRKLETQRTALGQTQGFSGGVRKLEQEGTRRPPTG*
Ga0132257_1000235821	3300015373	Arabidopsis Rhizosphere	REQLLAQRERELDERDDGWGGADVRELEARLRKLETQRTAPGGTPGFSGGFRRLEQEGTRRPPSD*
Ga0136617_105220561	3300017789	Polar Desert Sand	LDERDDGSGGGPDMYEVEARLRRLESQRTTADQTRGFSGGFRKLEQEGSRKPQGR
Ga0190274_129497111	3300018476	Soil	REQLLAQRERELDEREDGWGGPEFRDLESRLRRLETQRLTGDQTRSFSGGFKKLEQEGTRKPQG
Ga0190271_100609171	3300018481	Soil	RELDEREDGWGGPEFRDLESRLRRLETQRLTGDQTRSFSGGFKKLEQEGTRKPQG
Ga0173481_108514692	3300019356	Soil	PDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG
Ga0247785_10477052	3300022889	Soil	RELDEREDGWGGADLQELESRLRRLETQRQATQTGSFSGGFRRLEQEGSRRPPPA
Ga0247745_10297411	3300022898	Soil	REQLLAQRERELDERDDGWGGADVRELEARLRRLETQRTAPGGTPGFSGGFRRLEQEGTRRPPSD
Ga0247788_10878982	3300022901	Soil	QRERELDEREDGWGGPDLHELESRLRRLETQRQAAQAGSFSGGFRRLEQEGTRHPPSQ
Ga0247790_101440701	3300022915	Soil	AQRERELDEREDGWGGPDLHELESRLRRLETQRQAAQAGSFSGGFRRLEQEGTRHPPSQ
Ga0247797_10476881	3300023057	Soil	QRERELDEREDGWGGPEIRDLESRLRRLETQRYAGEQTRSFSGGFRRLEEQGTRKPPG
Ga0247757_101305752	3300023097	Plant Litter	QLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG
Ga0209342_107580621	3300025326	Soil	REDGDWGRPEISELEARLRKLEQRGSAGESTQSFSGGVRKLQQEGSRRRPTSPP
Ga0210115_10073834	3300025791	Natural And Restored Wetlands	MHCRELDEREDSWGGPELRDLESRLRKLETQRLTSGQTSSFSGGFQKLEQQGTRRPPS
Ga0207653_103836091	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	GWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPAG
Ga0207642_102703371	3300025899	Miscanthus Rhizosphere	EQLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG
Ga0207688_103109612	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	RERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG
Ga0207707_105189841	3300025912	Corn Rhizosphere	EREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG
Ga0207652_103923963	3300025921	Corn Rhizosphere	DGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG
Ga0207681_115894361	3300025923	Switchgrass Rhizosphere	HLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG
Ga0207694_110635951	3300025924	Corn Rhizosphere	RELDEREDGWGGPDLHELESRLRRLETQRQTAQAGSFSGGFRRLEQEGTRHPPSQ
Ga0207650_107094391	3300025925	Switchgrass Rhizosphere	SDAIAAREQLLAQRERELDEREDGWGGPDVRELEARLRRLETQRTALEQTQGFSGGFRKLEQDGARRPPST
Ga0207706_106544682	3300025933	Corn Rhizosphere	GWGGPDVRELEARLRRLETQRTAHEQTQGFSGGFRKLEQDGARRPPST
Ga0207709_115637051	3300025935	Miscanthus Rhizosphere	REDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQDGTRRPPVG
Ga0207670_107597151	3300025936	Switchgrass Rhizosphere	REDGWGGPDVRELEARLRRLETQRTAREQTQGFSGGFRKLEQDGARRPPST
Ga0207669_101290641	3300025937	Miscanthus Rhizosphere	GWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG
Ga0207669_105215583	3300025937	Miscanthus Rhizosphere	TDAITAREQLLAQRERELDEREDSWGGPEIRDLESRLRRLETQRLTGEQTTRSFSGGFKKLEQEGTRKPQG
Ga0207704_100527041	3300025938	Miscanthus Rhizosphere	LLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG
Ga0207689_111549941	3300025942	Miscanthus Rhizosphere	IAAREQLLAQRERELDERDDGWGGADVRELEARLRRLETQRTAPGGTPGFSGGFRRLEQEGTRRPPSG
Ga0207679_106833002	3300025945	Corn Rhizosphere	LLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPAG
Ga0207640_113757502	3300025981	Corn Rhizosphere	IAAREQLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG
Ga0207702_116990122	3300026078	Corn Rhizosphere	DAIAAREQLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG
Ga0207676_125997422	3300026095	Switchgrass Rhizosphere	LAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPT
Ga0207674_114443312	3300026116	Corn Rhizosphere	DEREDGWGGADLQELESRLRRLETQRQAAQTGSFSGGFRRLEQEGSRRPPSE
Ga0207683_120063281	3300026121	Miscanthus Rhizosphere	REDGWGGADLQELESRLRRLETQRQAAQTGSFSGGFRRLEQEGSRRPPSE
Ga0207698_102203341	3300026142	Corn Rhizosphere	AIAAREQLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG
Ga0209481_103411811	3300027880	Populus Rhizosphere	EREDGWGGPDLHELESRLRRLETQRQAAQAGSFSGGFRRLEQEGTRHPPSQ
Ga0247828_103927122	3300028587	Soil	EREDSWGGPEIRDLESRLRRLETQRLTGDQTRSFSGGFRKLEQEGTRKPQG
Ga0247821_106681412	3300028596	Soil	ADHSDAIAAREQLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG
Ga0247819_110518451	3300028608	Soil	LLALVEIALALREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG
Ga0247827_102492352	3300028889	Soil	APAVLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG
Ga0247827_106428082	3300028889	Soil	VQLSLSLREDGWGGTDLHELESRLRRLETQRQTAQTGSFSGGFRRLEQEGSRRPPAT
Ga0247827_112105821	3300028889	Soil	RERELDEREDGWGGPDLHELESRLRRLETQRQAAQAGSFSGGFRRLEQEGTRHPPSQ
Ga0307410_120922431	3300031852	Rhizosphere	TDAIAAREQLLAQRERELDEREDGWGGSDLHELESRLRRLETQRQTTQTGSFSGGFRRLEQEGSRRPPSK
Ga0308176_106916431	3300031996	Soil	EREDGWGGPDVRELEARLRKLERQRTALGQTQGFSGGFRKLEQDGTRRPPTG
Ga0310890_110195301	3300032075	Soil	REQLLAQRERELDEREDSWGGPEIRDLESRLRRLETQRLTGEQTTRSFSGGFKKLEQEGTRKPQG
Ga0310812_103369083	3300032421	Soil	EDGWGGADLQELESRLRRLETQRQATQTGSFSGGFRRLEQEGSRRPPPA
Ga0247829_101469185	3300033550	Soil	DGWGGPEIRDLESRLRRLETQRLTGDQTRSFSGGFRKLEQEGTRKPQG
Ga0247830_101155743	3300033551	Soil	REQLLAQRERDLDEREDGWGGPDVRELEARLRKLETQRTALGQTQGFSGGFRKLEQEGTRRPPTG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078670

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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