Metagenome / Metatranscriptome Family F078577

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078577
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	60 residues
Representative Sequence	MSDVYYKVTVTRGELSSSVYWWEKTYAKLMESVDFLYKYAKVDAVELEMITKKEYDNRAN
Number of Associated Samples	80
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.86 %
% of genes near scaffold ends (potentially truncated)	22.41 %
% of genes from short scaffolds (< 2000 bps)	69.83 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (49.138 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (40.517 % of family members)
Environment Ontology (ENVO)	Unclassified (69.828 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (97.414 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.00% β-sheet: 28.41% Coil/Unstructured: 46.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF02540	NAD_synthase	14.66
PF13203	DUF2201_N	11.21
PF00127	Copper-bind	5.17
PF13186	SPASM	4.31
PF10276	zf-CHCC	3.45
PF04055	Radical_SAM	2.59
PF14279	HNH_5	2.59
PF07681	DoxX	1.72
PF01832	Glucosaminidase	1.72
PF07728	AAA_5	0.86
PF02525	Flavodoxin_2	0.86
PF14099	Polysacc_lyase	0.86
PF03819	MazG	0.86
PF13394	Fer4_14	0.86
PF05345	He_PIG	0.86
PF07726	AAA_3	0.86
PF13353	Fer4_12	0.86
PF13419	HAD_2	0.86
PF05118	Asp_Arg_Hydrox	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0171	NH3-dependent NAD+ synthetase	Coenzyme transport and metabolism [H]	14.66
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	1.72
COG4270	Uncharacterized membrane protein	Function unknown [S]	1.72
COG3555	Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily	Posttranslational modification, protein turnover, chaperones [O]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.07 %
Unclassified	root	N/A	37.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.86 %
Unclassified	root	N/A	37.93 %
Viruses	superkingdom	All Organisms → Viruses	11.21 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.14 %
Unclassified	root	N/A	37.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.34 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.72 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	16.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.21 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.34 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	3.45 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.72 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	16.38 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.34 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5.17 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	3.45 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.59 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	1.72 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	16.38 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.34 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	5.17 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	3.45 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.72 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	0.86 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	10.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.34 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	5.17 %
Saprospiria	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria	4.31 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	3.45 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.72 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	0.86 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	10.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.34 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	5.17 %
Saprospirales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales	4.31 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	3.45 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.72 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	0.86 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Crocinitomicaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae	10.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.34 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	5.17 %
unclassified Saprospirales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales	4.31 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	3.45 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.72 %
unclassified Candidatus Pelagibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter	0.86 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
unclassified Crocinitomicaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae	10.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.34 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	5.17 %
Saprospirales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	4.31 %
Planctomycetaceae bacterium TMED240	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240	3.45 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.72 %
Candidatus Pelagibacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	0.86 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Crocinitomicaceae bacterium TMED45	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	10.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.34 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	5.17 %
Saprospirales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	4.31 %
Planctomycetaceae bacterium TMED240	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240	3.45 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.72 %
Candidatus Pelagibacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	0.86 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001460\|JGI24003J15210_10000015	All Organisms → cellular organisms → Bacteria	75415	Open in IMG/M
3300001833\|ACM24_1076756	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	655	Open in IMG/M
3300001846\|ACM22_1079019	Not Available	812	Open in IMG/M
3300005400\|Ga0066867_10003889	Not Available	7018	Open in IMG/M
3300005606\|Ga0066835_10032156	All Organisms → Viruses → Predicted Viral	1497	Open in IMG/M
3300005608\|Ga0066840_10007041	All Organisms → Viruses → Predicted Viral	2034	Open in IMG/M
3300005608\|Ga0066840_10065307	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300005608\|Ga0066840_10085658	Not Available	650	Open in IMG/M
3300005934\|Ga0066377_10141697	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	729	Open in IMG/M
3300005960\|Ga0066364_10049324	All Organisms → cellular organisms → Bacteria	1360	Open in IMG/M
3300005960\|Ga0066364_10264080	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	602	Open in IMG/M
3300006025\|Ga0075474_10159943	Not Available	704	Open in IMG/M
3300006749\|Ga0098042_1097324	Not Available	748	Open in IMG/M
3300006869\|Ga0075477_10092112	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	1304	Open in IMG/M
3300006902\|Ga0066372_10062641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1841	Open in IMG/M
3300007344\|Ga0070745_1270254	Not Available	611	Open in IMG/M
3300007345\|Ga0070752_1037309	All Organisms → Viruses → Predicted Viral	2318	Open in IMG/M
3300007542\|Ga0099846_1348612	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	502	Open in IMG/M
3300007960\|Ga0099850_1092776	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240	1252	Open in IMG/M
3300009103\|Ga0117901_1245499	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	915	Open in IMG/M
3300009677\|Ga0115104_10977069	Not Available	535	Open in IMG/M
3300009703\|Ga0114933_10029313	All Organisms → Viruses → Predicted Viral	4184	Open in IMG/M
3300009790\|Ga0115012_10043751	All Organisms → Viruses → Predicted Viral	2964	Open in IMG/M
3300010148\|Ga0098043_1167296	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300012520\|Ga0129344_1364078	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240	744	Open in IMG/M
3300012525\|Ga0129353_1110762	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240	974	Open in IMG/M
3300012920\|Ga0160423_10187116	All Organisms → Viruses → Predicted Viral	1445	Open in IMG/M
3300012928\|Ga0163110_10010004	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	5280	Open in IMG/M
3300012928\|Ga0163110_10335574	Not Available	1116	Open in IMG/M
3300012928\|Ga0163110_10440935	Not Available	983	Open in IMG/M
3300012928\|Ga0163110_10574782	Not Available	868	Open in IMG/M
3300012928\|Ga0163110_10887243	Not Available	705	Open in IMG/M
3300012928\|Ga0163110_11460298	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	554	Open in IMG/M
3300012936\|Ga0163109_10006726	All Organisms → cellular organisms → Bacteria → Proteobacteria	8647	Open in IMG/M
3300012936\|Ga0163109_10183476	Not Available	1537	Open in IMG/M
3300012954\|Ga0163111_10025918	Not Available	4324	Open in IMG/M
3300012954\|Ga0163111_10069364	All Organisms → cellular organisms → Bacteria → Proteobacteria	2806	Open in IMG/M
3300012954\|Ga0163111_10299993	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1426	Open in IMG/M
3300012954\|Ga0163111_11395971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	690	Open in IMG/M
3300012954\|Ga0163111_11713870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	627	Open in IMG/M
3300013188\|Ga0116834_1100062	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	603	Open in IMG/M
3300017714\|Ga0181412_1002655	All Organisms → cellular organisms → Bacteria	6416	Open in IMG/M
3300017714\|Ga0181412_1084587	Not Available	760	Open in IMG/M
3300017714\|Ga0181412_1144921	Not Available	537	Open in IMG/M
3300017719\|Ga0181390_1082726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	884	Open in IMG/M
3300017763\|Ga0181410_1002456	All Organisms → cellular organisms → Bacteria	7470	Open in IMG/M
3300017763\|Ga0181410_1025692	Not Available	1913	Open in IMG/M
3300017782\|Ga0181380_1081380	Not Available	1134	Open in IMG/M
3300017949\|Ga0181584_10888367	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	523	Open in IMG/M
3300017952\|Ga0181583_10382959	Not Available	878	Open in IMG/M
3300017956\|Ga0181580_10087785	All Organisms → Viruses → Predicted Viral	2294	Open in IMG/M
3300017956\|Ga0181580_10204863	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	1382	Open in IMG/M
3300017958\|Ga0181582_10349843	Not Available	954	Open in IMG/M
3300017958\|Ga0181582_10587816	Not Available	682	Open in IMG/M
3300017968\|Ga0181587_10801541	Not Available	588	Open in IMG/M
3300017969\|Ga0181585_10114390	All Organisms → Viruses → Predicted Viral	2010	Open in IMG/M
3300019765\|Ga0194024_1032554	Not Available	1134	Open in IMG/M
3300020258\|Ga0211529_1076148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300020264\|Ga0211526_1001589	All Organisms → cellular organisms → Bacteria	4061	Open in IMG/M
3300020332\|Ga0211502_1020871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	1343	Open in IMG/M
3300020340\|Ga0211594_1108597	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300020340\|Ga0211594_1132811	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	520	Open in IMG/M
3300020349\|Ga0211511_1127377	Not Available	579	Open in IMG/M
3300020368\|Ga0211674_10013486	All Organisms → Viruses → Predicted Viral	2518	Open in IMG/M
3300020374\|Ga0211477_10105010	All Organisms → cellular organisms → Bacteria → Proteobacteria	1039	Open in IMG/M
3300020377\|Ga0211647_10068658	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300020392\|Ga0211666_10016457	All Organisms → cellular organisms → Bacteria	3554	Open in IMG/M
3300020394\|Ga0211497_10122227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1035	Open in IMG/M
3300020400\|Ga0211636_10003321	All Organisms → cellular organisms → Bacteria	9161	Open in IMG/M
3300020406\|Ga0211668_10026125	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	2796	Open in IMG/M
3300020417\|Ga0211528_10077730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1380	Open in IMG/M
3300020417\|Ga0211528_10110895	Not Available	1105	Open in IMG/M
3300020417\|Ga0211528_10163719	Not Available	869	Open in IMG/M
3300020420\|Ga0211580_10000063	All Organisms → cellular organisms → Bacteria	70981	Open in IMG/M
3300020430\|Ga0211622_10133087	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1072	Open in IMG/M
3300020438\|Ga0211576_10000459	All Organisms → cellular organisms → Bacteria	34262	Open in IMG/M
3300020438\|Ga0211576_10001348	All Organisms → cellular organisms → Bacteria	18848	Open in IMG/M
3300020438\|Ga0211576_10009730	Not Available	6129	Open in IMG/M
3300020442\|Ga0211559_10078933	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	1597	Open in IMG/M
3300020444\|Ga0211578_10410100	Not Available	565	Open in IMG/M
3300020446\|Ga0211574_10023083	Not Available	2913	Open in IMG/M
3300020448\|Ga0211638_10229446	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	855	Open in IMG/M
3300020448\|Ga0211638_10360013	Not Available	679	Open in IMG/M
3300020448\|Ga0211638_10440017	Not Available	613	Open in IMG/M
3300020452\|Ga0211545_10227917	Not Available	858	Open in IMG/M
3300020455\|Ga0211664_10001924	All Organisms → cellular organisms → Bacteria	13628	Open in IMG/M
3300020455\|Ga0211664_10275678	Not Available	779	Open in IMG/M
3300020456\|Ga0211551_10497093	Not Available	581	Open in IMG/M
3300020459\|Ga0211514_10064741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1849	Open in IMG/M
3300020459\|Ga0211514_10640617	Not Available	519	Open in IMG/M
3300020463\|Ga0211676_10002815	All Organisms → cellular organisms → Bacteria	17290	Open in IMG/M
3300020463\|Ga0211676_10035852	All Organisms → cellular organisms → Bacteria	3688	Open in IMG/M
3300020463\|Ga0211676_10037485	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	3581	Open in IMG/M
3300020463\|Ga0211676_10123122	All Organisms → cellular organisms → Bacteria	1671	Open in IMG/M
3300020465\|Ga0211640_10092016	All Organisms → cellular organisms → Bacteria	1750	Open in IMG/M
3300020465\|Ga0211640_10263903	Not Available	960	Open in IMG/M
3300020469\|Ga0211577_10137268	All Organisms → Viruses → Predicted Viral	1659	Open in IMG/M
3300020473\|Ga0211625_10051874	Not Available	2521	Open in IMG/M
3300020473\|Ga0211625_10414950	Not Available	674	Open in IMG/M
3300020477\|Ga0211585_10000017	Not Available	328149	Open in IMG/M
3300020478\|Ga0211503_10291294	Not Available	894	Open in IMG/M
3300020478\|Ga0211503_10344181	Not Available	807	Open in IMG/M
3300021356\|Ga0213858_10015383	All Organisms → Viruses → Predicted Viral	3627	Open in IMG/M
3300021364\|Ga0213859_10004533	Not Available	6188	Open in IMG/M
3300022176\|Ga0212031_1090323	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	523	Open in IMG/M
3300022187\|Ga0196899_1116446	Not Available	775	Open in IMG/M
3300022198\|Ga0196905_1000635	All Organisms → cellular organisms → Bacteria	13949	Open in IMG/M
3300022198\|Ga0196905_1000640	All Organisms → cellular organisms → Bacteria	13927	Open in IMG/M
3300023172\|Ga0255766_10142848	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	1377	Open in IMG/M
3300025646\|Ga0208161_1007319	All Organisms → Viruses → Predicted Viral	4862	Open in IMG/M
3300025771\|Ga0208427_1272646	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240	513	Open in IMG/M
3300026081\|Ga0208390_1036334	Not Available	1350	Open in IMG/M
3300026189\|Ga0208405_1014497	Not Available	1251	Open in IMG/M
3300026189\|Ga0208405_1053246	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	607	Open in IMG/M
3300026189\|Ga0208405_1067369	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	524	Open in IMG/M
3300026260\|Ga0208408_1058940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1233	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.14%
Freshwater	Environmental → Aquatic → Freshwater	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified	40.52%
Oceanic	Environmental → Aquatic → Marine → Oceanic	29.31%
Coastal	Environmental → Aquatic → Marine → Coastal	14.66%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	7.76%
Strait	Environmental → Aquatic → Marine → Strait	6.03%
River	Environmental → Aquatic → Freshwater → River	0.86%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	40.52%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	17.24%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	14.66%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	12.07%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	7.76%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	6.03%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	40.52%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	15.52%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	12.07%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	12.07%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	7.76%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	6.03%
Marine Plankton	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton	1.72%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.72%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.86%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.86%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300001833	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM24, ROCA_DNA012_0.2um_2l	Environmental	Open in IMG/M
3300001846	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM22, ROCA_DNA119_0.2um_25b	Environmental	Open in IMG/M
3300005400	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261	Environmental	Open in IMG/M
3300005606	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84	Environmental	Open in IMG/M
3300005608	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A	Environmental	Open in IMG/M
3300005934	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B	Environmental	Open in IMG/M
3300005960	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A	Environmental	Open in IMG/M
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006749	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG	Environmental	Open in IMG/M
3300006869	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA	Environmental	Open in IMG/M
3300006902	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A	Environmental	Open in IMG/M
3300007344	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental	Open in IMG/M
3300009103	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um	Environmental	Open in IMG/M
3300009677	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009703	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG	Environmental	Open in IMG/M
3300009790	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome	Environmental	Open in IMG/M
3300010148	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG	Environmental	Open in IMG/M
3300012520	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012525	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental	Open in IMG/M
3300013188	Marine hypoxic microbial communities from the Gulf of Mexico, USA - 6m_Station1_GOM_Metagenome	Environmental	Open in IMG/M
3300017714	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15	Environmental	Open in IMG/M
3300017719	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21	Environmental	Open in IMG/M
3300017763	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20	Environmental	Open in IMG/M
3300017782	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017952	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017958	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017968	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017969	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019765	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG	Environmental	Open in IMG/M
3300020258	Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556061-ERR598949)	Environmental	Open in IMG/M
3300020264	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556116-ERR599158)	Environmental	Open in IMG/M
3300020332	Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX555956-ERR598975)	Environmental	Open in IMG/M
3300020340	Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555960-ERR599119)	Environmental	Open in IMG/M
3300020349	Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289006-ERR315859)	Environmental	Open in IMG/M
3300020368	Marine microbial communities from Tara Oceans - TARA_B100001027 (ERX556049-ERR599093)	Environmental	Open in IMG/M
3300020374	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)	Environmental	Open in IMG/M
3300020377	Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)	Environmental	Open in IMG/M
3300020392	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)	Environmental	Open in IMG/M
3300020394	Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)	Environmental	Open in IMG/M
3300020400	Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)	Environmental	Open in IMG/M
3300020406	Marine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024)	Environmental	Open in IMG/M
3300020417	Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)	Environmental	Open in IMG/M
3300020420	Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)	Environmental	Open in IMG/M
3300020430	Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)	Environmental	Open in IMG/M
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental	Open in IMG/M
3300020442	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)	Environmental	Open in IMG/M
3300020444	Marine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)	Environmental	Open in IMG/M
3300020446	Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)	Environmental	Open in IMG/M
3300020448	Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)	Environmental	Open in IMG/M
3300020452	Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)	Environmental	Open in IMG/M
3300020455	Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)	Environmental	Open in IMG/M
3300020456	Marine microbial communities from Tara Oceans - TARA_B100001741 (ERX555984-ERR599123)	Environmental	Open in IMG/M
3300020459	Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)	Environmental	Open in IMG/M
3300020463	Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)	Environmental	Open in IMG/M
3300020465	Marine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961)	Environmental	Open in IMG/M
3300020469	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)	Environmental	Open in IMG/M
3300020473	Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)	Environmental	Open in IMG/M
3300020477	Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)	Environmental	Open in IMG/M
3300020478	Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)	Environmental	Open in IMG/M
3300021356	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245	Environmental	Open in IMG/M
3300021364	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304	Environmental	Open in IMG/M
3300022176	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)	Environmental	Open in IMG/M
3300022187	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)	Environmental	Open in IMG/M
3300022198	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)	Environmental	Open in IMG/M
3300023172	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG	Environmental	Open in IMG/M
3300025646	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025771	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300026081	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A (SPAdes)	Environmental	Open in IMG/M
3300026189	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A (SPAdes)	Environmental	Open in IMG/M
3300026260	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67 (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24003J15210_1000001511	3300001460	Marine	MGENSIMSDVYYKVIVTRGELSSTHYWWERTYANLMESVDILYKCAKMDAVVLEMITKKEYDNRTN*
ACM24_10767562	3300001833	Marine Plankton	MGENSIVSDVYYKVTVTRGELSSSVYWWEKTYAQLMESVDFLYKYAKVDAVELEMITKKEWHYGEYGF*
ACM22_10790192	3300001846	Marine Plankton	MGENSIVSEVYYKVTVTKGDLSSCVYWWEKTYGQLMESVDFLYKYAKVDAIELEMITKKEYDNRAY*
Ga0066867_100038896	3300005400	Marine	MSAVYYKVTVTRDNMECTLYWWEKTYPKLLESVDFLYKYAKVDAVELEMLNYKQWHKGMYGF*
Ga0066835_100321563	3300005606	Marine	MSDVYYKVTVTKNDMECTLYWWEKTYSNLLESVDILYKCAKVDAVELEMITKKEWHYGEYGF*
Ga0066840_100070413	3300005608	Marine	MGKNSIINDVYYKVTVTRGELSSSVYWWEKTYAKLMESVDFLYKYAKVDAVELEMITKKEYDNRAY*
Ga0066840_100653072	3300005608	Marine	MGKDCVMKDVYYKVTVTRGDLSSSVYWWEKSYTKMLKSVDFLYKYAKIDAVELEMISKEDYDNGE*
Ga0066840_100856583	3300005608	Marine	MGENSIVSDVYYKVTVTRGELSSTHYWWEKTYTDLMESVDILYKCAKMDAVELEMISEKEYNDNFC*
Ga0066377_101416972	3300005934	Marine	MEKDVYYKVTVTKDDKECTVYWWEKTYKKLMESVDMLYHVSKVDAVELEMISKEEYDRNFV*
Ga0066364_100493243	3300005960	Marine	MSDVYYKVTVTRDNMECTLYWWEKSYPNLLESVDFLYKYAKVDAVELEMITKKEWHYGEYGF*
Ga0066364_102640802	3300005960	Marine	MGENGIVSDVYYKVTVTRGELSSSVYWWEKTYASLMESVDFLYKYAKVDAVELEMITKKDYDNRTY*
Ga0075474_101599432	3300006025	Aqueous	MNKDVYYKVMVTKDDMECTVYWWEKTYNKLMESIDMLYQISKVDAIELEMITKEEYDRNFV*
Ga0098042_10973241	3300006749	Marine	MGENSIVSDVYYKVTVTRGELSSSVYWWEKSYAKLLKSVDFLYKYAKIDAVELEMISKEDYKNGE*
Ga0075477_100921121	3300006869	Aqueous	MNKDVYYKVMVTKDDMECTVYWWEKTYNKLMESIDMLYQISKVDAIELEMITKEEYD
Ga0066372_100626415	3300006902	Marine	MSSVYYKVTVTKDNMECTVYWWEKTYAKLMEAVDFLYKYAKVDAVELEMLTYKQWHKGEYDI*
Ga0070745_12702543	3300007344	Aqueous	SDVYYKVTVTRDDTECTLYWWEKTYTKLMESVDFLYKYAKVDAVVLEMISKKEYNDNYC*
Ga0070752_10373094	3300007345	Aqueous	MHVYYKVTVTKGDLSSSVYWWEKTYTKLMESVDFLYKYAKVDAVVLEMISKKEYNDNYC*
Ga0099846_13486122	3300007542	Aqueous	MSDLHYKVIVTRGQQSSSVYWWEKTYAKLMESVDLLYKCAKVDAVELEIISEKEYNDNYC
Ga0099850_10927764	3300007960	Aqueous	MAVYYKALVTKGKLEATVYWYEKTYSKLMESVDFLYKYAKVDAVELEMISKNEYENR*
Ga0117901_12454993	3300009103	Marine	MIKMAVYYKVIVTRNNFSCVLYWWEKTYSKLMESVDLLYECAKVDAVELEMITKKEYDKNFV*
Ga0115104_109770692	3300009677	Marine	MSAVYYKVTVTRDDLECTLYWWEKTYALLMESVDILYKCAKVDAVVLEMITKEQWHKGTYGY*
Ga0114933_100293137	3300009703	Deep Subsurface	MSDVYYKVTVTRGELECTVYWWEKTYAKLMESVDLLYKCAKMDAVELEMITKKEYDNRTY
Ga0115012_100437513	3300009790	Marine	LEWANIQSNKEKEKEMSVYYKVTVTKNDMECTLYWWEKTYSNLLESVDNLYKYAKVDAVELEMLNYKEWHKGEYGF*
Ga0098043_11672962	3300010148	Marine	VSDVYYKVTVTRGEISSSVYWWEKSYAKLLKSVDFLYKYAKIDAVELEMISKEDYKNGE*
Ga0129344_13640783	3300012520	Aqueous	MAVYYKALVTKGKLEATVYWYAKTYSKLMESVDFVYKYAKVDAVELEMISKNEY
Ga0129353_11107622	3300012525	Aqueous	MAVYYKALVTKGKLEATVYWYEKTYSKLMESVDFLYKYAKVDAVELEMISKHEYENR*
Ga0160423_101871164	3300012920	Surface Seawater	VSDVYYKVTVTKGELSSCVYWWEKSYANLLKSVDFLYKYAKMDAIELEIISKKDYERGE*
Ga0163110_100100041	3300012928	Surface Seawater	VNDVYYKVTVTKGELSSCVYWWEKTYGQLMESVDFLYKYAKIDAVELEMISEKEYNDNYC
Ga0163110_103355743	3300012928	Surface Seawater	MSVYYKVTVTKNDMECTLYWWEKTYSKLLESVDILYKCAKVDAVELEMITKKEWHKGEYGF*
Ga0163110_104409351	3300012928	Surface Seawater	VSDVYYKVTVTRGELSSSVYWWEKSYAKLLKSVDFLYKYAKIDAVELEMISKEDYKNGE*
Ga0163110_105747822	3300012928	Surface Seawater	MSDVYYKVTVTKGELSSSVYWWEKSYAKLLKSVDFLYKYAKIDAIELEMISKKYYERGE*
Ga0163110_108872431	3300012928	Surface Seawater	VSDVYYKVTVTRGELSSCVYWWEKSYAKLLKSVDFLYKYAKIDAIELEMISKKDYERGE*
Ga0163110_114602983	3300012928	Surface Seawater	MSDVYYKVTVTKDDTECTVYWWEKTYAKLMESVDLLYKCAKVDAVELEMINEQEYNDNYC
Ga0163109_1000672612	3300012936	Surface Seawater	MSDVYYKVTVTKGELSSTVYWWEKTYTDLMESVDILYNCAKMDALELEMITKKEYDANFC
Ga0163109_101834763	3300012936	Surface Seawater	MNNVYYKVTVTRGELSSSVYWWEKTYAKLMESVDFLYKYAKVDAVELEMITKKEYDNRAY
Ga0163111_100259186	3300012954	Surface Seawater	VELMSVYYKVTVTKNDMECTLYWWEKTYSNLLESVDILYKCAKVDAVELEMITKKEWHKGEYGF*
Ga0163111_100693643	3300012954	Surface Seawater	MSDVYYKVTVTRGELSSCVYWWEKSYAKLLKSVDFLYKYAKIDAIELEMISKKDYERGE*
Ga0163111_102999933	3300012954	Surface Seawater	MSDVYYKVTVTKGELSSSVYWWEKTYTGLMESVDILYKCAKVDAVELEMISEKEYNDNYC
Ga0163111_113959713	3300012954	Surface Seawater	MSAVYYKVTVTRDNMECTLYWWEKTYPKLLESVDFLYKYAKVDAVELEMITKKEWHKGEY
Ga0163111_117138702	3300012954	Surface Seawater	MSDVYYKVTVTKNDMECTLYWWEKTYSNLLESVDILYKCAKVDAVELEMITK
Ga0116834_11000621	3300013188	Marine	RILKKNDMNKDVYYKVTVTKDDMECTVYWWEKTYNKLMESIDMLYHISKVDAIELEMITREEYDRNFV*
Ga0181412_10026558	3300017714	Seawater	MSYVYYKVTVTRGELSSTHYWWERTYANLMESVDILYKCAKMDAVVLEMISEKEYNDNIC
Ga0181412_10845871	3300017714	Seawater	VTRDDLECTLYWWEKTYALLMESVDILYKCAKVDAVVLEMITKEQWHKGTYGY
Ga0181412_11449211	3300017714	Seawater	MSAVYYKVTVTRDDLECTLYWWEKTYALLMESVDILYKCAKVDAVVLEM
Ga0181390_10827262	3300017719	Seawater	MSAVYYKVTVTRDDLECTLYWWEKTYALLMESVDILYKCAKVDAVVLEMITKEQWHKGTYGY
Ga0181410_10024569	3300017763	Seawater	MSDVYYKVTVTRGELSSTHYWWERTYANLMESVDILYKCAKMDAVVLEMISEKEYNDNIC
Ga0181410_10256921	3300017763	Seawater	VYYKVTVTKGELSSTVYWWEKTYADLMESVDILYNCAKMDALELEMITKKEYDANFC
Ga0181380_10813801	3300017782	Seawater	MHVYYKVTVTRGELSSTHYWWEKTYGQLMESVDILYKCAKVDAVELEMITKNEYKNR
Ga0181584_108883672	3300017949	Salt Marsh	MSDVYYKVTVTRDDTECTLYWWEKTYTKLMESVDFLYKYAKVDAIELEMINEQEYNDNYC
Ga0181583_103829592	3300017952	Salt Marsh	MSDVYYKVTVTKGELSSSVYWWEKTYAKLMESVDLLYKCAKVDAVELEIISEKEYNDNYC
Ga0181580_100877854	3300017956	Salt Marsh	MGENSIMSDVYYKVTVTKGELSSSVYWWEKTYAKLMESVDLLYKCAKVDAVELEIISEKEYNDNYC
Ga0181580_102048631	3300017956	Salt Marsh	MNDVYYKVTVTRGEQSSLVYWWEKTYTKLMESVDLLYKCAKVDAVELE
Ga0181582_103498431	3300017958	Salt Marsh	MSDVYYKVTVTRDDTECTLYWWEKTYTKLMESVDFLYKYAKVDAIELEMINEQE
Ga0181582_105878162	3300017958	Salt Marsh	MSNVYYKVTVTRGEQSSLVYWWEKTYTKLMESVDLLYKCAKVDAVELEMISEKEYNDNYC
Ga0181587_108015413	3300017968	Salt Marsh	MSNVYYKVTVTRGEQSSLVYWWEKTYTKLMESVDLLYKCAKVDAVELEIISEKEYNDNYC
Ga0181585_101143904	3300017969	Salt Marsh	VYYKVTVTRGEQSSLVYWWEKTYTKLMESVDLLYKCAKVDAVELEIISEKEYNDNYC
Ga0194024_10325544	3300019765	Freshwater	MSDVYYKVTVTRDDTECTLYWWEKTYTKLMESVDFLYKYAKVDAVVLEMISKKEYNDNYC
Ga0211529_10761482	3300020258	Marine	MSDVYYKVTVTKNDMECTLYWWEKTYSNLLESVDILYKCAKVDAVELEMITKKEWHYGEYGF
Ga0211526_10015898	3300020264	Marine	MGENSIMSDVYYKVTVTRGELSSSVYWWEKTYGQLMESVDFLYKYAKVDAVELEMITKKEYDNRAY
Ga0211502_10208713	3300020332	Marine	MSNVYYKVTVTKNDMECTLYWWEKTYKKLMESVDLLYKCAKVDAVELEMVTKKEYDDNFV
Ga0211594_11085972	3300020340	Marine	YKVTVTRGELSSSVYWWEKTYGQLMESVDFLYKYAKIDAVELEMISKEDYKNGE
Ga0211594_11328111	3300020340	Marine	MGKDCVMSAVYYKVTVTKGDLSSTLNWYEKTYAKMLKTVDFLYKYAKVDAVELEMITKKDYENGE
Ga0211511_11273771	3300020349	Marine	VYYKVTVTKNDMECTLYWWEKTYSNLLESVDILYKCAKVEAVELEMITKKQWHKGMYGY
Ga0211674_100134864	3300020368	Marine	VGKDSIVSGVYYKVTVTRGELSSSVYWWEKTYASLMESVDLLYKSAKMDAVELEMITKKEYDNGRV
Ga0211477_101050104	3300020374	Marine	MNPVYYKVTVTRNDMECTLYWWEKSYPNLLESVDFLYKYAKVDAVELEMITKKEWHKGQYGF
Ga0211647_100686583	3300020377	Marine	MSDVYYKVTVTKGELSSSVYWWEKSYAKLLKSVDFLYKYAKIDAIELEMISKKYYERGE
Ga0211666_100164575	3300020392	Marine	MGENSIVSDVYYKVTVTRGELSSSVYWWEKSYAKLLKSVDFLYKYAKIDAVELEMISKEDYKNGE
Ga0211497_101222272	3300020394	Marine	MSNVYYKVTVTRGELECTVYWWEKTYAKLMESVDLLYKCAKMDAVELEMITKKEYDNRTY
Ga0211636_100033214	3300020400	Marine	MGENSIVSEVYYKVTVTKGDLSSSVYWWEKTYGQLMESVDFLYKYAKIDAVELEMISKEDYKNGE
Ga0211668_100261252	3300020406	Marine	MGEDSIMSDVYYKVTVTRGELSSSVYWWEKTYASLMESVDFLYKSAKMDAVELEMITKKEYDNGRV
Ga0211528_100777304	3300020417	Marine	MSDVYYKVTVTKNDMECTLYWWEKTYSNLLESVDNLYKYAKVDAVELEMITKKEW
Ga0211528_101108952	3300020417	Marine	MGENSIMSDVYYKVTVTRGELSSSVYWWEKTYSQLMESVDFLYKYAKVDAVELEMITKKEYDNRAY
Ga0211528_101637192	3300020417	Marine	MGENSIVSEVYYKVTVTKGDLSSCVYWWEKTYGQLMESVDFLYKYAKVDAVELEMITKKEYDNRAY
Ga0211580_1000006365	3300020420	Marine	MGENSIVSDVYYKVTVTRGELSSSVYWWEKTYASLMESVDFLYKYAKVDAVELEMITKKEYDNRTN
Ga0211622_101330872	3300020430	Marine	MSDVYYKVTVTRGELSSSVYWWEKTYGQLMESVDFLYKYAKIDAVELEMISKEDYKNGE
Ga0211576_1000045910	3300020438	Marine	MSAVYYKVTVTRDDLECTLYWWEKTYALLMESVDILYKCAKVDAVVLEMINKKEYDDNFC
Ga0211576_1000134822	3300020438	Marine	VSDVYYKVTVTRGELSSTNYWWEKTYGQLMESVDILYKCAKVDAVELEMITKNEYKNR
Ga0211576_100097308	3300020438	Marine	MSDVYYKVTVTKGELSSTVYWWEKTYADLMESVDILYNCAKMDALELEMITKKEYDANFC
Ga0211559_100789331	3300020442	Marine	MSDVYYKVTVTRDDTECTVYWWEKTYAKLMESVDLLYKCAKVDAVELEMINEQEYNDNYC
Ga0211578_104101002	3300020444	Marine	MQDNNVYYKVTVTKDNMECTLYWWEKTYSKLLESIDFLYKYAKVNAVELEMITKKEYSKGTYGI
Ga0211574_100230834	3300020446	Marine	MGENSIMSDVYYKVTVTKDDTECTVYWWEKTYAKLMESVDLLYKCAKVDAVELEMINEQEYNDNYC
Ga0211638_102294463	3300020448	Marine	MSDVYYKVTVTRGELSSSVYWWEKTYAKLMESVDFLYKYAKVDAVELEMITKKEYDNRTN
Ga0211638_103600133	3300020448	Marine	MSDVYYKVTVTRDNMECTLYWWEKSYPNLLESVDFLYKYAKVDAVELEMITKKEWHKGQYGF
Ga0211638_104400172	3300020448	Marine	MGENSIVSDVYYKVTVTRGELSSSVYWWEKTYASLMESVDLLYKSAKMDAVELEMITKKEYDNRTN
Ga0211545_102279172	3300020452	Marine	MKDVYYKVTVTRGELSSTVYWWEKTYADLMESVDILYKCAKMDALELEMITKKEYDANFC
Ga0211664_1000192412	3300020455	Marine	MSDVYYKVTVTKGELSSTVYWWEKTYADLMESVDILYNCAKMDALELEMITKEEYDANFC
Ga0211664_102756783	3300020455	Marine	MSSVYYKVTVTKNDMECTLYWWEKTYSNLLESVDILYKCAKVDAVELEMINKKEY
Ga0211551_104970932	3300020456	Marine	TLYWWEKTYSKLLESVDFLYKYAKVDAVELEMITKKEWHKGEYGF
Ga0211514_100647413	3300020459	Marine	MSSVYYKVTVTKNDMECTLYWWEKTYSNLLESVDILYKCAKVEAVELEMITKKQWHKGMYGY
Ga0211514_106406171	3300020459	Marine	SVYYKVTVTRNDLECTLYWWEKTYSNLLESVDILYKCAKVDAVELEMITKKEWHKGMYGY
Ga0211676_100028152	3300020463	Marine	MGEDSIMSDVYYKVTVTRGELSSSVYWWEKTYAGLMESVDLLYKSAKMDAVELEMITKKEYDNRTN
Ga0211676_100358523	3300020463	Marine	MGENSIMSDVYYKVTATKGELSSSVYWWEKSYAKLLKSVDFLYKYAKIDVIELEMISKKDYERGE
Ga0211676_100374859	3300020463	Marine	MSDVYYKVTVTRGELSSSVYWWEKTYAKLMESVDFLYKYAKVDAVELEMITKKEYDNRAN
Ga0211676_101231224	3300020463	Marine	VGKNGLVKDVYYKVTVTRGELSSSVYWWEKTYTKMLKSVDFLYKYAKIDAVELEMISKEDYKNGE
Ga0211640_100920161	3300020465	Marine	LVLMSAVYYKVTVTKNDMECTLYWWEKTYSKLLESVDFLYKYAKVDAVELEMITKKEWHKGEYGF
Ga0211640_102639033	3300020465	Marine	MSSVYYKVTVTKNDMECTLYWWEKTYSNLLESVDILYKCAKVDAVELEMINKKEYDDNFC
Ga0211577_101372681	3300020469	Marine	MGENSIMSDVYYKVIVTRGELSSTHYWWERTYANLMESVDILYKCAKMDAVVLEMITKKEYDNRTN
Ga0211625_100518745	3300020473	Marine	MSVYYKVTVTKNDMECTLYWWEKTYSKLLESVDILYKCAKVDAVELEMITKKEWHKAEYG
Ga0211625_104149501	3300020473	Marine	MSAVYYKVTVTKNDMECTLYWWEKTYSKLLESVDFLYKYAKVDAVELEMITKKEWHKGEYGF
Ga0211585_1000001796	3300020477	Marine	MSNVYYKVTVTKNDMECTLYWWEKTYKKLMESVDLLYKCAKVDAVELEMVTKEEYDENFV
Ga0211503_102912943	3300020478	Marine	LEWANIQSNKEKEKEMSVYYKVTVTKNDMECTLYWWEKTYSNLLESVDNLYKYAKVDAVELEMLNYKEWHKGEYGF
Ga0211503_103441812	3300020478	Marine	MSVYYKVTVTKDNMECTLYWWEKTYTKLMESIDFLYKYAKVDAVELEMLNYKQWHKGTYG
Ga0213858_100153831	3300021356	Seawater	MNDVYYKVIVTRGEQSSLVYWWEKTYTKLMESVDLLYKCAKVDAVELEMISEKEYNDNYC
Ga0213859_1000453311	3300021364	Seawater	MNDVYYKVTVTRGEQSSLVYWWEKTYTKLMESVDLLYKCAKVDAVELEIISEKEYNDNYC
Ga0212031_10903233	3300022176	Aqueous	MSDVYYKITVTKNNMEHTVYWWEKTYAKLMESVDLLYKCAKVDAVELEIISEKEYNDNYC
Ga0196899_11164461	3300022187	Aqueous	MSDVYYKVTVTRDDTECTLYWWEKNYTKLMESVDFLYKYAKVDAVVLEM
Ga0196905_10006352	3300022198	Aqueous	MSDLYYKVIVTRGQQSSSVYWWEKTYAKLMESVDLLYKCAKVDAVELEIISEKEYNDNYC
Ga0196905_100064016	3300022198	Aqueous	MSDVYYKITVTKNNMEHTVYWWEKTYAKLMESVDLLYKCAKVDAVELEIISEKE
Ga0255766_101428484	3300023172	Salt Marsh	MSNVYYKVTVTRGEQSSLVYWWEKTYTKLMESVDLLYKCAKVDAVELEMISEKEY
Ga0208161_10073191	3300025646	Aqueous	MSDVYYKITVTKNNMEHTVYWWEKTYAKLMESVDLLYKCAKVDAVELEIISEKEYNDNY
Ga0208427_12726461	3300025771	Aqueous	MAVYYKALVTKGKLEATVYWYEKTYSKLMESVDFLYKYAKVDAVELEMISK
Ga0208390_10363343	3300026081	Marine	MSDVYYKVTVTRDNMECTLYWWEKSYPNLLESVDFLYKYAKVDAVELEMITKKEWHYGEYGF
Ga0208405_10144973	3300026189	Marine	MSSVYYKVTVTRDDLECTLYWWEKTYSNLLESVDILYKCAKVDAVELEMINKKEYDDNFC
Ga0208405_10532463	3300026189	Marine	MGKNSIMNDVYYKVTVTRGELSSSVYWWEKTYAKLMESVDFLYKYAKVDAVELEMITKKEYDNRAY
Ga0208405_10673691	3300026189	Marine	DVYYKVTVTRGELSSTHYWWEKTYTDLMESVDILYKCAKMDAVELEMISEKEYNDNFC
Ga0208408_10589402	3300026260	Marine	MSAVYYKVTVTRDNMECTLYWWEKTYPKLLESVDFLYKYAKVDAVELEMLNYKQWHKGMYGF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078577

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences