Metagenome Family F078548

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078548
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	59 residues
Representative Sequence	MNKADLVTNALRDALMAYRKLDGPDTALVIVALFGVTQSKRLAPMLEEIAQSVQPASKGA
Number of Associated Samples	84
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	66.38 %
% of genes near scaffold ends (potentially truncated)	38.79 %
% of genes from short scaffolds (< 2000 bps)	87.07 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (71.552 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (18.103 % of family members)
Environment Ontology (ENVO)	Unclassified (76.724 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (91.379 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.27% β-sheet: 0.00% Coil/Unstructured: 47.73%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01068	DNA_ligase_A_M	3.45
PF13474	SnoaL_3	1.72
PF01019	G_glu_transpept	1.72
PF00872	Transposase_mut	1.72
PF14354	Lar_restr_allev	1.72
PF10387	DUF2442	1.72
PF08032	SpoU_sub_bind	0.86
PF00343	Phosphorylase	0.86
PF17164	DUF5122	0.86
PF04392	ABC_sub_bind	0.86
PF07452	CHRD	0.86
PF00589	Phage_integrase	0.86
PF13884	Peptidase_S74	0.86
PF13607	Succ_CoA_lig	0.86
PF07589	PEP-CTERM	0.86
PF00291	PALP	0.86
PF07690	MFS_1	0.86
PF09954	DUF2188	0.86
PF13924	Lipocalin_5	0.86
PF12244	DUF3606	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	3.45
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	3.45
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	1.72
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	1.72
COG0058	Glucan phosphorylase	Carbohydrate transport and metabolism [G]	0.86
COG0566	tRNA G18 (ribose-2'-O)-methylase SpoU	Translation, ribosomal structure and biogenesis [J]	0.86
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
All Organisms	root	All Organisms	28.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
cellular organisms	root	All Organisms → cellular organisms	28.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	14.66 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.59 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7.76 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.72 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	3.45 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.72 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.72 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.86 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.72 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	1.72 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.72 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.72 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.72 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	1.72 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.72 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.72 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.86 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.72 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	1.72 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.72 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.72 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	0.86 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.72 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	1.72 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.72 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.72 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.86 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_7889_length_2907_cov_6.742002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	2939	Open in IMG/M
3300000787\|JGI11643J11755_11645125	Not Available	828	Open in IMG/M
3300000890\|JGI11643J12802_10297528	Not Available	771	Open in IMG/M
3300004463\|Ga0063356_102618048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	775	Open in IMG/M
3300004463\|Ga0063356_105630019	Not Available	537	Open in IMG/M
3300005093\|Ga0062594_101743779	Not Available	653	Open in IMG/M
3300005290\|Ga0065712_10519873	Not Available	636	Open in IMG/M
3300005328\|Ga0070676_10510185	Not Available	855	Open in IMG/M
3300005330\|Ga0070690_101144512	Not Available	619	Open in IMG/M
3300005331\|Ga0070670_100091808	All Organisms → cellular organisms → Bacteria	2611	Open in IMG/M
3300005331\|Ga0070670_100142696	All Organisms → cellular organisms → Bacteria → PVC group	2071	Open in IMG/M
3300005334\|Ga0068869_100761555	Not Available	830	Open in IMG/M
3300005335\|Ga0070666_10790999	Not Available	698	Open in IMG/M
3300005335\|Ga0070666_11138323	Not Available	581	Open in IMG/M
3300005338\|Ga0068868_101521765	Not Available	627	Open in IMG/M
3300005344\|Ga0070661_101854217	Not Available	512	Open in IMG/M
3300005347\|Ga0070668_100692054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	899	Open in IMG/M
3300005353\|Ga0070669_100410280	Not Available	1110	Open in IMG/M
3300005353\|Ga0070669_100791667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	805	Open in IMG/M
3300005353\|Ga0070669_101206504	Not Available	654	Open in IMG/M
3300005353\|Ga0070669_101642181	Not Available	560	Open in IMG/M
3300005354\|Ga0070675_100722950	Not Available	908	Open in IMG/M
3300005356\|Ga0070674_102203446	Not Available	503	Open in IMG/M
3300005364\|Ga0070673_100319366	Not Available	1371	Open in IMG/M
3300005364\|Ga0070673_101527110	Not Available	630	Open in IMG/M
3300005366\|Ga0070659_101943733	Not Available	528	Open in IMG/M
3300005438\|Ga0070701_10596821	Not Available	731	Open in IMG/M
3300005455\|Ga0070663_101765163	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300005456\|Ga0070678_100049135	Not Available	3043	Open in IMG/M
3300005457\|Ga0070662_100052613	All Organisms → cellular organisms → Bacteria → Proteobacteria	2945	Open in IMG/M
3300005457\|Ga0070662_100323582	Not Available	1258	Open in IMG/M
3300005457\|Ga0070662_100687594	Not Available	865	Open in IMG/M
3300005457\|Ga0070662_100991122	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300005457\|Ga0070662_101580822	Not Available	566	Open in IMG/M
3300005543\|Ga0070672_101059996	Not Available	720	Open in IMG/M
3300005548\|Ga0070665_100429711	Not Available	1330	Open in IMG/M
3300005564\|Ga0070664_100458687	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300005577\|Ga0068857_100533499	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300005577\|Ga0068857_101199864	Not Available	735	Open in IMG/M
3300005578\|Ga0068854_100700028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	874	Open in IMG/M
3300005616\|Ga0068852_101754435	Not Available	643	Open in IMG/M
3300005718\|Ga0068866_10854133	Not Available	637	Open in IMG/M
3300005719\|Ga0068861_100917118	Not Available	831	Open in IMG/M
3300005842\|Ga0068858_101048958	Not Available	800	Open in IMG/M
3300005844\|Ga0068862_101606667	Not Available	657	Open in IMG/M
3300006755\|Ga0079222_11380450	Not Available	650	Open in IMG/M
3300006881\|Ga0068865_100159207	Not Available	1721	Open in IMG/M
3300009176\|Ga0105242_13079796	Not Available	517	Open in IMG/M
3300009177\|Ga0105248_10714734	Not Available	1130	Open in IMG/M
3300009177\|Ga0105248_11024311	Not Available	933	Open in IMG/M
3300009177\|Ga0105248_11161882	Not Available	873	Open in IMG/M
3300009177\|Ga0105248_11774397	Not Available	700	Open in IMG/M
3300009553\|Ga0105249_11131755	Not Available	853	Open in IMG/M
3300010400\|Ga0134122_12338646	Not Available	581	Open in IMG/M
3300010400\|Ga0134122_13194973	Not Available	513	Open in IMG/M
3300012486\|Ga0157331_1012771	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	649	Open in IMG/M
3300012987\|Ga0164307_10891515	Not Available	715	Open in IMG/M
3300013296\|Ga0157374_11631253	Not Available	669	Open in IMG/M
3300013297\|Ga0157378_10249344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1699	Open in IMG/M
3300013306\|Ga0163162_10372764	All Organisms → cellular organisms → Bacteria	1561	Open in IMG/M
3300013306\|Ga0163162_10760223	Not Available	1088	Open in IMG/M
3300013307\|Ga0157372_11284131	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	845	Open in IMG/M
3300013308\|Ga0157375_11120823	Not Available	921	Open in IMG/M
3300014968\|Ga0157379_10850807	Not Available	863	Open in IMG/M
3300014969\|Ga0157376_12897234	Not Available	519	Open in IMG/M
3300015371\|Ga0132258_10408888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3373	Open in IMG/M
3300015371\|Ga0132258_11268395	All Organisms → cellular organisms → Bacteria	1862	Open in IMG/M
3300015371\|Ga0132258_11512494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1695	Open in IMG/M
3300015374\|Ga0132255_100025173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7418	Open in IMG/M
3300015374\|Ga0132255_102055293	Not Available	870	Open in IMG/M
3300017792\|Ga0163161_10653158	Not Available	872	Open in IMG/M
3300025315\|Ga0207697_10142811	Not Available	1039	Open in IMG/M
3300025315\|Ga0207697_10489606	Not Available	544	Open in IMG/M
3300025899\|Ga0207642_11011584	Not Available	535	Open in IMG/M
3300025901\|Ga0207688_10361291	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300025901\|Ga0207688_10589405	Not Available	700	Open in IMG/M
3300025919\|Ga0207657_10661639	Not Available	813	Open in IMG/M
3300025920\|Ga0207649_11662100	Not Available	505	Open in IMG/M
3300025923\|Ga0207681_10013947	All Organisms → cellular organisms → Bacteria → Proteobacteria	4980	Open in IMG/M
3300025923\|Ga0207681_10953580	Not Available	719	Open in IMG/M
3300025923\|Ga0207681_11381193	Not Available	591	Open in IMG/M
3300025925\|Ga0207650_10086433	All Organisms → cellular organisms → Bacteria	2387	Open in IMG/M
3300025925\|Ga0207650_10580343	Not Available	941	Open in IMG/M
3300025930\|Ga0207701_10116517	Not Available	2383	Open in IMG/M
3300025930\|Ga0207701_10482359	Not Available	1062	Open in IMG/M
3300025931\|Ga0207644_10082781	Not Available	2375	Open in IMG/M
3300025932\|Ga0207690_11185131	Not Available	637	Open in IMG/M
3300025933\|Ga0207706_10126214	All Organisms → cellular organisms → Bacteria → Proteobacteria	2251	Open in IMG/M
3300025933\|Ga0207706_10144265	All Organisms → cellular organisms → Bacteria → Proteobacteria	2095	Open in IMG/M
3300025933\|Ga0207706_10656480	Not Available	898	Open in IMG/M
3300025933\|Ga0207706_11572081	Not Available	534	Open in IMG/M
3300025940\|Ga0207691_10511060	Not Available	1020	Open in IMG/M
3300025940\|Ga0207691_11462933	Not Available	560	Open in IMG/M
3300025941\|Ga0207711_10099459	All Organisms → cellular organisms → Bacteria → Proteobacteria	2571	Open in IMG/M
3300025942\|Ga0207689_10550321	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	969	Open in IMG/M
3300025945\|Ga0207679_12166212	Not Available	505	Open in IMG/M
3300025960\|Ga0207651_10884239	Not Available	795	Open in IMG/M
3300025961\|Ga0207712_11182246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	682	Open in IMG/M
3300025972\|Ga0207668_11408594	Not Available	628	Open in IMG/M
3300025981\|Ga0207640_10131329	All Organisms → cellular organisms → Bacteria → Proteobacteria	1811	Open in IMG/M
3300025981\|Ga0207640_11922390	Not Available	536	Open in IMG/M
3300025986\|Ga0207658_10448078	Not Available	1142	Open in IMG/M
3300026041\|Ga0207639_11243271	Not Available	699	Open in IMG/M
3300026088\|Ga0207641_11083502	Not Available	799	Open in IMG/M
3300026116\|Ga0207674_10005808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14643	Open in IMG/M
3300026118\|Ga0207675_100911911	Not Available	895	Open in IMG/M
3300026142\|Ga0207698_10827413	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300027360\|Ga0209969_1049254	Not Available	660	Open in IMG/M
3300027526\|Ga0209968_1010007	Not Available	1454	Open in IMG/M
3300027614\|Ga0209970_1123377	Not Available	502	Open in IMG/M
3300027617\|Ga0210002_1009216	All Organisms → cellular organisms → Bacteria	1508	Open in IMG/M
3300027717\|Ga0209998_10043897	Not Available	1021	Open in IMG/M
3300028380\|Ga0268265_10829358	Not Available	903	Open in IMG/M
3300028380\|Ga0268265_11178664	Not Available	763	Open in IMG/M
3300032000\|Ga0310903_10277025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	817	Open in IMG/M
3300033412\|Ga0310810_11191195	Not Available	619	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	87.07%
Environmental	Environmental	12.93%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	87.07%
Terrestrial	Environmental → Terrestrial	12.93%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	50.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	37.07%
Soil	Environmental → Terrestrial → Soil	12.93%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	37.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	31.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.07%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	11.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.17%
Loam	Environmental → Terrestrial → Soil → Loam	1.72%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	37.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	31.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.07%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.72%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	18.10%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	14.66%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.03%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	6.03%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	6.03%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.17%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.59%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012486	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.120510	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027360	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027614	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_03066990	2140918013	Soil	MRRKVDKVERVTNALRDALMAYGNLDGPDAALVIVTLFGVTHSKRVAPLLEDLARSVQPAGNA
JGI11643J11755_116451252	3300000787	Soil	MDQVERVTNALRDALVAYEKLDGPDSALVIVALFGVTHSKRLAPMLEEIAQSVQPASKGTR*
JGI11643J12802_102975282	3300000890	Soil	MDKVELVTNALRDALIDYEKLDGPDSALVIVALFGVVHSKRLAPMLEEIAQSVQPATKAER*
Ga0063356_1026180482	3300004463	Arabidopsis Thaliana Rhizosphere	DGREMRGKVDKVERVTSAVRDALMAYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR*
Ga0063356_1056300191	3300004463	Arabidopsis Thaliana Rhizosphere	MDNVELVTNALRDALVAYEKLDGPDSALVIVALFGVTQSKRLAPMLEEIAQTVQPASKAAR*
Ga0062594_1017437792	3300005093	Soil	TVAKGQMEKVELVANPLRDAFVAYEKLDGPDSALVIVALFGVTQSKRLGPMLKEIAQSVHQASEGRSER
Ga0065712_105198731	3300005290	Miscanthus Rhizosphere	MRGKVDKVERVTSAVRDALMAYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSV
Ga0070676_105101852	3300005328	Miscanthus Rhizosphere	MNNADLVTNALRDALTAYGKLDGPDTALVIVALFGTQSKRLAPMLEEIAQAVQPASKGAR
Ga0070690_1011445122	3300005330	Switchgrass Rhizosphere	MDKVELVTHALRDALMTYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR*
Ga0070670_1000918082	3300005331	Switchgrass Rhizosphere	LRDASVAYEKLDGPDTALVLVALFGVTHSKRLAPMLEEIAQTVVQTNKAAK*
Ga0070670_1001426963	3300005331	Switchgrass Rhizosphere	MDKVESVTKALRDGLVTYEELDGPDTALVLVALFGVTHSKRLAPMLEEIAQTVVQANKAAK*
Ga0068869_1007615551	3300005334	Miscanthus Rhizosphere	MNKPDLVANALRDALTAYRKLDGPDTALVIVALFGTQSKRLAPMLEEIAQAVQPASKLAR
Ga0070666_107909992	3300005335	Switchgrass Rhizosphere	MRSKVDKVELVTKALRNALMAYRNLDGPDAALVIVALFGVTNAKRVAPMVDELAHSVQPKV*
Ga0070666_111383233	3300005335	Switchgrass Rhizosphere	VDKVERVTSAVRDALMAYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR*
Ga0068868_1015217651	3300005338	Miscanthus Rhizosphere	MNKPDLVANALRDALTAYRKLDGPDTALVIVALFGTQSKRLAPMLEEIAQAVQPASKGAR
Ga0070661_1018542171	3300005344	Corn Rhizosphere	MNKADLVTNALRDALTAYGKLDGPDTALVIVALFGTQSKRLAPMLEEIAQS
Ga0070668_1006920542	3300005347	Switchgrass Rhizosphere	VTNALRDALTAYGKLDGPDTALVIVALFGVTQSKRLAPFLEEIAQSVQPASKGPR*
Ga0070669_1004102803	3300005353	Switchgrass Rhizosphere	MNKADFITNALRDALTAYGKLDGPDTALVIVALFGVTQSKRLAPMLEEIAQSV*
Ga0070669_1007916671	3300005353	Switchgrass Rhizosphere	MNKADLVTNALRDALTAYGKLDGPDTALVIVALFGVTQSKRLAPFLEEIAQSVQPASKGPR*
Ga0070669_1012065042	3300005353	Switchgrass Rhizosphere	MRSKVDKVELVTKALRNALMAYRNLDGPDAALVIVALFGVTNAKRVAPMVDELAHSVQ
Ga0070669_1016421811	3300005353	Switchgrass Rhizosphere	MNKADLVTNALRDALTAYGKLDGPDTALVIVALFGNQSKRLAPMLEEIAQSVQRASKGTK
Ga0070675_1007229503	3300005354	Miscanthus Rhizosphere	GKVDKVERVTSAVRDALMAYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR*
Ga0070674_1022034462	3300005356	Miscanthus Rhizosphere	MEKVELVANPLRDAFVAYEKLDGPDSALVIVALFGVTQSKRLGPMLKEIAQSVHQASEGR
Ga0070673_1003193662	3300005364	Switchgrass Rhizosphere	MRGRVDKVERVTSAVRDALMAYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR*
Ga0070673_1015271101	3300005364	Switchgrass Rhizosphere	LVTNALRDAFTAYRKLDGPDTALVIVALFGVTRSKRLAPMLEEIAQCVQGASKGTR*
Ga0070659_1019437332	3300005366	Corn Rhizosphere	MNRADLVTNALRDALTAYSNLDGPETALVIVALFGTQSKRLAPMLEEIAQAVQPASKGAR
Ga0070701_105968211	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MDKVELVTHALRDALMTYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQ
Ga0070663_1017651632	3300005455	Corn Rhizosphere	MNNADLVTNALRDALTAYGKLDGPDTALVIVALFGNQSKRLAPMLEEIAQSVQPTSKGSPG*
Ga0070678_1000491353	3300005456	Miscanthus Rhizosphere	MRAKMDKVELVTHALRDALMTYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR*
Ga0070662_1000526133	3300005457	Corn Rhizosphere	MNKADLVTNALRDAFMAYSKLDGPDTALVIVALFGVTQSKRLAPFLEEIAQSVQPASKGPR*
Ga0070662_1003235822	3300005457	Corn Rhizosphere	MEKVELVANPLRDAFVAYEKLDGPDSALVIVALFGVTQSKRLGPMLKEIAQSVHQASEGRSER*
Ga0070662_1006875941	3300005457	Corn Rhizosphere	QMNNADLVTNALRDALTAYGTLDGPDTALVIGRAIWSTQSTRLAAMLEEIAHSVQPASREAR*
Ga0070662_1009911222	3300005457	Corn Rhizosphere	MNNADLVTNALRDALTAYGKLDGPDTALVIVALFGNQSKRLAPMLEEIAQS
Ga0070662_1015808221	3300005457	Corn Rhizosphere	MNKADLVTNALRDALTAYRKLDGPDTALVIVALFGTQSKRLAPMLEEIAQAVQPSSKLAR
Ga0070672_1010599962	3300005543	Miscanthus Rhizosphere	MDKVELVTHALRDALMTYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPTQKTQR*
Ga0070665_1004297113	3300005548	Switchgrass Rhizosphere	MDKVELVTNALRDALMTYQNPDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR*
Ga0070664_1004586872	3300005564	Corn Rhizosphere	MSKVESVTKALRDALVTYEELDGPDTALVLVALFGVTHSKRLAPMLGEIAQTVVQTNKAAK*
Ga0068857_1005334991	3300005577	Corn Rhizosphere	ELVTKALRNALMAYRNLDGPDAALVIVALFGVTNAKRVAPMVDELAHSVQPKV*
Ga0068857_1011998641	3300005577	Corn Rhizosphere	MEKVELVANPLRDAFVAYEKLDGPDSALVIVALFGVTHSKRLGPMLKEIAQSVHQASEGRSER*
Ga0068854_1007000281	3300005578	Corn Rhizosphere	LRDALTAYRKLDGPDTALVIIALFGMQSKRLAPMLEEIAQSVQSASRGTR*
Ga0068852_1017544351	3300005616	Corn Rhizosphere	MNKADLVTNALRDALTAYGKLDGPDTALVIVALFGTQSKRLAPMLEEIAQSVQPTSKGSPG*
Ga0068866_108541331	3300005718	Miscanthus Rhizosphere	VDKVERVTSAVRDALMAYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLA
Ga0068861_1009171182	3300005719	Switchgrass Rhizosphere	MNKADLVTNALRDALTAYGQLDGPGTALVIVALFGVTQSKRLAPMLEE
Ga0068858_1010489581	3300005842	Switchgrass Rhizosphere	MDKVELVTHALRDALMTYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQP
Ga0068862_1016066672	3300005844	Switchgrass Rhizosphere	LVTKALRNALMAYRNLDGPDAALVIVALFGVTNAKRVAPMVDELAHSVQPKV*
Ga0079222_113804502	3300006755	Agricultural Soil	MDKVELVTNALRDALRAYETLDGPDQALVIVALFGVTQSKRLAPMLEEVAQHVQSSSKGAK*
Ga0068865_1001592071	3300006881	Miscanthus Rhizosphere	MDKVELVTHALRDALMTYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQ
Ga0105242_130797961	3300009176	Miscanthus Rhizosphere	MNKADLVTNALRDALTAYGKLDGPDTALVIVALFGTQSKRLAPMLEEIAQAVQSASKGTR
Ga0105248_107147343	3300009177	Switchgrass Rhizosphere	MDKVELVTNALRDALMTYQNPDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQP
Ga0105248_110243112	3300009177	Switchgrass Rhizosphere	MNKPDLVTNALRDALTAYSKLDDPDTALVIVSLFGVTHSKRLAPMLEEIAQSVQPASKGAR*
Ga0105248_111618822	3300009177	Switchgrass Rhizosphere	MGGKVDKVELVTKALRNALMAYRNLDGPDAALVIVALFGVTNAKRVAPMVDELAHSVQPKV*
Ga0105248_117743971	3300009177	Switchgrass Rhizosphere	MNKADLVTNALRDALTAYGKLDGPDTALVIVALFGTQSKRLAPMLEEIAQGVQRVSMGTR
Ga0105249_111317552	3300009553	Switchgrass Rhizosphere	MNKADFVTNALRDAFMAYSKLDGPDTALVIVALFGVTQSKRLAPFLEEIAQSVQPASKGPR*
Ga0134122_123386461	3300010400	Terrestrial Soil	VTNALRDALTAYGKLDGPDTALVIVALFGTQSKRLAPMLEEIAQAVQSASKGTR*
Ga0134122_131949731	3300010400	Terrestrial Soil	MNKADLVTNALRDALTAYRKLDGPETALVIVALFGTQSKRLAPMLEEIAHSVQPASKAIR
Ga0157331_10127711	3300012486	Soil	RVTSALRDALMAYGNLDGPDAALVIVALFCVTHSKRVAPLLENLAQREAGAKKQG*
Ga0164307_108915152	3300012987	Soil	MDKVELVTHALRDALMTYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLERSVQPAQKTQR*
Ga0157374_116312532	3300013296	Miscanthus Rhizosphere	VNRREMRSKVDKVELVTKALRNALMAYRNLDGPDAALVIVALFGVTNAKRVAPMVDELAHSVQPKV*
Ga0157378_102493442	3300013297	Miscanthus Rhizosphere	MNKADLVTNALRDALTAYRKLDGPDTALVIIALFGMQSKRLAPMLEEIAQSVQSASRGTR
Ga0163162_103727643	3300013306	Switchgrass Rhizosphere	MRSKVDKVELVTKALRNALMAYRNLDGPDAALVIVALFGVTNAKRVAPMVDELAHSVQSKV*
Ga0163162_107602231	3300013306	Switchgrass Rhizosphere	MAKVDLVTSALRDALAAYAKLDGPDTALVIVSLFGVTQSKRLAPMLEEIA*
Ga0157372_112841312	3300013307	Corn Rhizosphere	MNKPDLVTNALRDALTAYGKLDGPDTALVIVALFGVTQSKRFAPMLEEIAQSVQPASKGTR*
Ga0157375_111208232	3300013308	Miscanthus Rhizosphere	MRGKVDKVELVTKALRNALMAYRNLDGPDAALVIVALFGVTNAKRVAPMVDELAHSVQPKV*
Ga0157379_108508072	3300014968	Switchgrass Rhizosphere	MDKVELVTNALRDALMTYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR*
Ga0157376_128972342	3300014969	Miscanthus Rhizosphere	MDKVERVTNALRDALMAYGNLDGPDAALVIVALFGVTNAKRVAPMVDELAHSVQPKV*
Ga0132258_104088883	3300015371	Arabidopsis Rhizosphere	MDKVELVTNALRDALLAYEKLDGPDSALVIVALFGVTQSKRLAPMLEEIAQNVQPASKGAR*
Ga0132258_112683952	3300015371	Arabidopsis Rhizosphere	MDEVELVTNALRDALAAYEKLDGPDSALVIVALFGVSHSKRLAPLLEEIAHNVQPASKTPR*
Ga0132258_115124941	3300015371	Arabidopsis Rhizosphere	MNKADLVTNALRDALMAYGKLDGPDTALVIVALFGVQSKRLAPMLEEIAQSVQGAGKGAR
Ga0132255_1000251739	3300015374	Arabidopsis Rhizosphere	MRGKVDKVERVTSAVRDALMAYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR*
Ga0132255_1020552933	3300015374	Arabidopsis Rhizosphere	ERKGGMAKVDRVTNALRDALIEYGKLNGPDTALVIVALFGVAQSKRLAPLLQEIAHNVQPKQ*
Ga0163161_106531581	3300017792	Switchgrass Rhizosphere	MNKADFITNALRDALTAYGKLDGPDTALVIVALFGVTQSKRLAPMLEEIAQSV
Ga0207697_101428111	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MDKVELVTHALRDALMTYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQ
Ga0207697_104896061	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MEKVELVANPLRDAFVAYEKLDGPDSALVIVALFGVTQSKRLGPMLKEIAQSVHQASEGRSER
Ga0207642_110115841	3300025899	Miscanthus Rhizosphere	VGRLVSRYACNVDKVDLVTNALRDALVAYSKLDGPDTALVIVALFGVTQSKRLAPLLQEIAHNVQPAKQGL
Ga0207688_103612911	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	EARPMNEPDLVTNALRDALAAYRNLDGPDTALVIVALFGTQSKRLAPMLEEIAQAVQPASKLAR
Ga0207688_105894051	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MNKADLVTNALRDALTAYGKLDGPDTALVIVALFGTQSKRLAPMLEEIAQSVQPTSKGSP
Ga0207657_106616392	3300025919	Corn Rhizosphere	MNKADLVTDALRNALTAYGQLDGPDTALVIVALFGATQSKRLAPSLEEIAQSVQPASKGK
Ga0207649_116621001	3300025920	Corn Rhizosphere	LRDASVAYEKLDGPDTALVLVALFGVTHSKRLAPMLEEIAQTVVQTNKAAK
Ga0207681_100139476	3300025923	Switchgrass Rhizosphere	MDKVELVTDALRDALTAYRKLDGPDTALVIIALFGMQSKRLAPMLEEIAQSVQSASRGTR
Ga0207681_109535801	3300025923	Switchgrass Rhizosphere	MNKVDLVTNALRDVLAAYAKRDGPDATLLIIALFAISQSKRLGPMLQEIAHGVQPASKGA
Ga0207681_113811931	3300025923	Switchgrass Rhizosphere	VDKVELVTKALRNALMAYRNLDGPDAALVIVALFGVTNAKRVAPMVDELAHSVQ
Ga0207650_100864335	3300025925	Switchgrass Rhizosphere	VDKVELVTKALRNALMAYRNLDGPDAALVIVALFGVTNAKRVAPMVDELAHSVQPKV
Ga0207650_105803432	3300025925	Switchgrass Rhizosphere	MDKVESVTKALRDGLVTYEELDGPDTALVLVALFGVTHSKRLAPMLEEIAQTVVQANKAA
Ga0207701_101165172	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRGKVDKVERVTSAVRDALMAYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR
Ga0207701_104823592	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MNKADLVTNALRDALTAYGKLDGPDTALVIVALFGVTQSKRLAPMLEEIAQSV
Ga0207644_100827814	3300025931	Switchgrass Rhizosphere	MRAKMDKVELVTHALRDALMTYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR
Ga0207690_111851311	3300025932	Corn Rhizosphere	MNRADLVTNALRDALTAYSNLDGPETALVIVALFGTQSKRLAPMLEEIA
Ga0207706_101262141	3300025933	Corn Rhizosphere	MNKVDLVTNALRDVLAAYAKRDGPDATLLIIALFAISQSKRLGPMLQEIA
Ga0207706_101442652	3300025933	Corn Rhizosphere	MNKADLVTNALRDAFMSYSKLDGPDTALVIVALFGVTQSKRLAPFLEEIAQSVQPASKGP
Ga0207706_106564801	3300025933	Corn Rhizosphere	MNKADLVTNALRDALMAYRKLDGPDTALVIVALFGVTQSKRLAPMLEEIAQSVQPASKGA
Ga0207706_115720812	3300025933	Corn Rhizosphere	MNKPDLVANALRDALTAYRKLDGPDTALVIVALFGTQSKRLAPMLEEIAQAVQPSSKLAR
Ga0207691_105110602	3300025940	Miscanthus Rhizosphere	MRGRVDKVERVTSAVRDALMAYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR
Ga0207691_114629332	3300025940	Miscanthus Rhizosphere	MNKAELVTNALRDAFTAYGKLDGPDTALVIIALFGVTQSKRLAPMLEEIARSVQPVSKEA
Ga0207711_100994593	3300025941	Switchgrass Rhizosphere	VDKVERVTSAVRDALMAYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQ
Ga0207689_105503211	3300025942	Miscanthus Rhizosphere	MAKVDLVTSALRDALAAYAKLDGPDTALVIVSLFGVTQSKRLAPMLEEIAESVQGASKGA
Ga0207679_121662121	3300025945	Corn Rhizosphere	MNRADLVTNALRDAFTAYRKLDGPDTALVIVALFGVTRSKRLAPMLEEIAQCVQGASKGT
Ga0207651_108842391	3300025960	Switchgrass Rhizosphere	MEKVELVANPLRDAFVAYEKLDGPDSALVIVALFGVTQSKRLGPMLKEIAQ
Ga0207712_111822462	3300025961	Switchgrass Rhizosphere	MNKADFVTNALRDAFMAYSKLDGPDTALVIVALFGVTQSKRLAPFLEEIAQSVQPASKGP
Ga0207668_114085941	3300025972	Switchgrass Rhizosphere	MDKVELVTHALRDALMTYQNLDGPDAALVIVALFGVTHSKRVAPLLED
Ga0207640_101313291	3300025981	Corn Rhizosphere	MNKADFITNALRDALTAYGKLDGADTALVIVALFGVTQSKRLAPMLEEI
Ga0207640_119223901	3300025981	Corn Rhizosphere	MNKADLVTNALRDALTAYGQLDGPGTALVIVALFGVTQSKRFAPMLEEIAQS
Ga0207658_104480782	3300025986	Switchgrass Rhizosphere	MDKVELVTHALRDALMTYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPTQKTQ
Ga0207639_112432712	3300026041	Corn Rhizosphere	MDKVELVTDALRDALTAYRKLDGPDTALVIIALFGMQSKRLAPMLEEIAQSVQSAS
Ga0207641_110835023	3300026088	Switchgrass Rhizosphere	KHVDGHEMRGRVDKVERVTSAVRDALMAYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR
Ga0207674_100058081	3300026116	Corn Rhizosphere	MEKVELVANPLRDAFVAYEKLDGPDSALVIVALFGVTHSKRLGPMLKEIAQSVHQASEGRSER
Ga0207675_1009119111	3300026118	Switchgrass Rhizosphere	MNKADLVTNALRDALTAYGQLDGPGTALVIVALFGVTQSKRLAPMLEEIAQSVQPASKGK
Ga0207698_108274132	3300026142	Corn Rhizosphere	MDKVELVTDALRDALTAYRKLDGPDTALVIIALFGMQSKRLAPMLE
Ga0209969_10492542	3300027360	Arabidopsis Thaliana Rhizosphere	MDKVELVTNALRDALIDYEKLDGPDSALVIVALFGVVHSKRLAPMLEEIAQSVQPATKAA
Ga0209968_10100074	3300027526	Arabidopsis Thaliana Rhizosphere	MDQVERVTNALRDALVAYEKLDGPDSALVIVALFGVTHSKRLAPMLEEIAQSVQPASKGT
Ga0209970_11233772	3300027614	Arabidopsis Thaliana Rhizosphere	KQMDKVELVTNALRDALIDYEKLDGPDSALVIVALFGVVHSKRLAPMLEEIAQSVQPATKAAR
Ga0210002_10092164	3300027617	Arabidopsis Thaliana Rhizosphere	TNALRDALIDYEKLDGPDSALVIVALFGVVHSKRLAPMLEEIAQSVQPATKAAR
Ga0209998_100438971	3300027717	Arabidopsis Thaliana Rhizosphere	MDQVERVTNALRDALVAYEKLDGPDSALVIVALFGVTHSKRLAPMLEEISQSVQPASKGT
Ga0268265_108293583	3300028380	Switchgrass Rhizosphere	RPANGREMRAKMDKVELVTHALRDALMTYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR
Ga0268265_111786643	3300028380	Switchgrass Rhizosphere	VELVTKALRNALMAYRNLDGPDAALVIVALFGVTNAKRVAPMVDELAHSVQPKV
Ga0310903_102770252	3300032000	Soil	RDALMAYQNLDGPDAALVIVALFGVTHSKRVAPLLEDLARSVQPAQKTQR
Ga0310810_111911951	3300033412	Soil	MRYKVDKVERVTNALRDALMAYPNLNGPDAALVIVTLFGVTQSKRVAPLLE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078548

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences