Metagenome / Metatranscriptome Family F078440

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078440
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	42 residues
Representative Sequence	MLAPDEKLKLSPKPYLSATARFASGADTPRDFLERCLAD
Number of Associated Samples	101
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.14 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	87.07 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.483 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.586 % of family members)
Environment Ontology (ENVO)	Unclassified (37.931 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.517 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.36% β-sheet: 0.00% Coil/Unstructured: 71.64%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF12973	Cupin_7	15.52
PF01425	Amidase	12.07
PF11010	DUF2848	9.48
PF13356	Arm-DNA-bind_3	6.90
PF04199	Cyclase	5.17
PF03401	TctC	3.45
PF01799	Fer2_2	2.59
PF03706	LPG_synthase_TM	1.72
PF10387	DUF2442	1.72
PF02771	Acyl-CoA_dh_N	0.86
PF09084	NMT1	0.86
PF01494	FAD_binding_3	0.86
PF01520	Amidase_3	0.86
PF00710	Asparaginase	0.86
PF12399	BCA_ABC_TP_C	0.86
PF04551	GcpE	0.86
PF00561	Abhydrolase_1	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	12.07
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	5.17
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.45
COG0252	L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D	Translation, ribosomal structure and biogenesis [J]	1.72
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	1.72
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.72
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.86
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.86
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.86
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.86
COG0821	4-hydroxy-3-methylbut-2-enyl diphosphate synthase IspG/GcpE	Lipid transport and metabolism [I]	0.86
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	0.86
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.86
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.48 %
Unclassified	root	N/A	40.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.48 %
Unclassified	root	N/A	40.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.48 %
Unclassified	root	N/A	40.52 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	52.59 %
Unclassified	root	N/A	40.52 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.52 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	34.48 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.59 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.52 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.90 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.59 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.48 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.45 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.72 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.86 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.86 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.48 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.45 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.72 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.86 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.86 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.48 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.45 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.72 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.86 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.86 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.48 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.45 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.72 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.86 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.86 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17332883	All Organisms → cellular organisms → Bacteria	1260	Open in IMG/M
2199352025\|deepsgr__Contig_142300	Not Available	518	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10004591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3769	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10013483	All Organisms → cellular organisms → Bacteria	1969	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1042375	Not Available	641	Open in IMG/M
3300001989\|JGI24739J22299_10178543	Not Available	625	Open in IMG/M
3300004152\|Ga0062386_100257121	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300004479\|Ga0062595_101682289	Not Available	596	Open in IMG/M
3300005177\|Ga0066690_10331206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1031	Open in IMG/M
3300005447\|Ga0066689_10385250	All Organisms → cellular organisms → Bacteria → Proteobacteria	876	Open in IMG/M
3300005713\|Ga0066905_100652240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	897	Open in IMG/M
3300005713\|Ga0066905_101207455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	676	Open in IMG/M
3300005764\|Ga0066903_103034238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	909	Open in IMG/M
3300005764\|Ga0066903_105066026	All Organisms → cellular organisms → Bacteria → Proteobacteria	698	Open in IMG/M
3300005843\|Ga0068860_101666649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	660	Open in IMG/M
3300006042\|Ga0075368_10323886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	668	Open in IMG/M
3300006049\|Ga0075417_10235301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	875	Open in IMG/M
3300006051\|Ga0075364_10231535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1255	Open in IMG/M
3300006800\|Ga0066660_10194943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1540	Open in IMG/M
3300006847\|Ga0075431_102177550	Not Available	509	Open in IMG/M
3300006852\|Ga0075433_10977024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	738	Open in IMG/M
3300006854\|Ga0075425_100212667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2223	Open in IMG/M
3300006904\|Ga0075424_100931367	All Organisms → cellular organisms → Bacteria → Proteobacteria	927	Open in IMG/M
3300006953\|Ga0074063_14240508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1177	Open in IMG/M
3300007255\|Ga0099791_10609786	Not Available	534	Open in IMG/M
3300007788\|Ga0099795_10278473	Not Available	729	Open in IMG/M
3300009088\|Ga0099830_10474642	Not Available	1018	Open in IMG/M
3300009088\|Ga0099830_10748302	All Organisms → cellular organisms → Bacteria → Proteobacteria	805	Open in IMG/M
3300009100\|Ga0075418_11721548	Not Available	681	Open in IMG/M
3300009147\|Ga0114129_10040211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6592	Open in IMG/M
3300009792\|Ga0126374_11557415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300009792\|Ga0126374_11756943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300010047\|Ga0126382_10087708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1968	Open in IMG/M
3300010047\|Ga0126382_10228503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1346	Open in IMG/M
3300010048\|Ga0126373_10877021	Not Available	961	Open in IMG/M
3300010376\|Ga0126381_102285912	Not Available	777	Open in IMG/M
3300010403\|Ga0134123_10708422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	986	Open in IMG/M
3300012199\|Ga0137383_10420909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	979	Open in IMG/M
3300012209\|Ga0137379_11208588	Not Available	663	Open in IMG/M
3300012349\|Ga0137387_11077347	Not Available	573	Open in IMG/M
3300012357\|Ga0137384_10609025	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300012358\|Ga0137368_10900999	Not Available	539	Open in IMG/M
3300012923\|Ga0137359_10000786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24370	Open in IMG/M
3300012925\|Ga0137419_11835816	Not Available	519	Open in IMG/M
3300012948\|Ga0126375_12036408	Not Available	508	Open in IMG/M
3300012957\|Ga0164303_11430102	Not Available	519	Open in IMG/M
3300012971\|Ga0126369_10562198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1206	Open in IMG/M
3300012971\|Ga0126369_12914434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300012989\|Ga0164305_10548452	Not Available	919	Open in IMG/M
3300014296\|Ga0075344_1146856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300016270\|Ga0182036_10242091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1346	Open in IMG/M
3300016294\|Ga0182041_10226338	All Organisms → cellular organisms → Bacteria → Proteobacteria	1507	Open in IMG/M
3300016319\|Ga0182033_10073301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2421	Open in IMG/M
3300016319\|Ga0182033_10145818	All Organisms → cellular organisms → Bacteria → Proteobacteria	1819	Open in IMG/M
3300016319\|Ga0182033_10178087	All Organisms → cellular organisms → Bacteria → Proteobacteria	1670	Open in IMG/M
3300016319\|Ga0182033_10897681	Not Available	784	Open in IMG/M
3300016357\|Ga0182032_10193270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1543	Open in IMG/M
3300016357\|Ga0182032_12014110	Not Available	507	Open in IMG/M
3300016371\|Ga0182034_10330953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1231	Open in IMG/M
3300016445\|Ga0182038_10148969	All Organisms → cellular organisms → Bacteria → Proteobacteria	1783	Open in IMG/M
3300018051\|Ga0184620_10005832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2598	Open in IMG/M
3300020579\|Ga0210407_11332720	Not Available	535	Open in IMG/M
3300021384\|Ga0213876_10449412	Not Available	686	Open in IMG/M
3300022756\|Ga0222622_11246008	Not Available	547	Open in IMG/M
3300025904\|Ga0207647_10054334	All Organisms → cellular organisms → Bacteria → Proteobacteria	2464	Open in IMG/M
3300025906\|Ga0207699_10179048	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
3300025915\|Ga0207693_11051904	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300026095\|Ga0207676_11234351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	741	Open in IMG/M
3300026118\|Ga0207675_100171239	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2075	Open in IMG/M
3300026319\|Ga0209647_1206118	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300026536\|Ga0209058_1021215	All Organisms → cellular organisms → Bacteria → Proteobacteria	4252	Open in IMG/M
3300026552\|Ga0209577_10042905	All Organisms → cellular organisms → Bacteria → Proteobacteria	3862	Open in IMG/M
3300027050\|Ga0209325_1008935	All Organisms → cellular organisms → Bacteria → Proteobacteria	1107	Open in IMG/M
3300027523\|Ga0208890_1061776	Not Available	604	Open in IMG/M
3300027907\|Ga0207428_10612425	Not Available	784	Open in IMG/M
3300028381\|Ga0268264_12483967	Not Available	523	Open in IMG/M
3300028876\|Ga0307286_10093917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1048	Open in IMG/M
3300030905\|Ga0308200_1120345	Not Available	579	Open in IMG/M
3300031170\|Ga0307498_10359068	Not Available	562	Open in IMG/M
3300031543\|Ga0318516_10051172	All Organisms → cellular organisms → Bacteria → Proteobacteria	2247	Open in IMG/M
3300031543\|Ga0318516_10575707	Not Available	644	Open in IMG/M
3300031544\|Ga0318534_10378200	Not Available	814	Open in IMG/M
3300031546\|Ga0318538_10257560	Not Available	937	Open in IMG/M
3300031546\|Ga0318538_10259703	Not Available	933	Open in IMG/M
3300031564\|Ga0318573_10057705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1911	Open in IMG/M
3300031573\|Ga0310915_10419617	All Organisms → cellular organisms → Bacteria → Proteobacteria	950	Open in IMG/M
3300031640\|Ga0318555_10066232	All Organisms → cellular organisms → Bacteria → Proteobacteria	1858	Open in IMG/M
3300031748\|Ga0318492_10171294	Not Available	1102	Open in IMG/M
3300031754\|Ga0307475_10883121	Not Available	707	Open in IMG/M
3300031765\|Ga0318554_10300984	All Organisms → cellular organisms → Bacteria → Proteobacteria	912	Open in IMG/M
3300031770\|Ga0318521_10102790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1575	Open in IMG/M
3300031770\|Ga0318521_10424581	All Organisms → cellular organisms → Bacteria → Proteobacteria	794	Open in IMG/M
3300031777\|Ga0318543_10093646	Not Available	1284	Open in IMG/M
3300031780\|Ga0318508_1144256	Not Available	674	Open in IMG/M
3300031781\|Ga0318547_10772018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300031782\|Ga0318552_10199133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1013	Open in IMG/M
3300031793\|Ga0318548_10029273	Not Available	2403	Open in IMG/M
3300031793\|Ga0318548_10513045	Not Available	585	Open in IMG/M
3300031797\|Ga0318550_10444531	Not Available	627	Open in IMG/M
3300031799\|Ga0318565_10140754	All Organisms → cellular organisms → Bacteria → Proteobacteria	1168	Open in IMG/M
3300031821\|Ga0318567_10596457	Not Available	627	Open in IMG/M
3300031835\|Ga0318517_10030427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2162	Open in IMG/M
3300031893\|Ga0318536_10473264	Not Available	631	Open in IMG/M
3300031912\|Ga0306921_11260970	Not Available	820	Open in IMG/M
3300031941\|Ga0310912_10007265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6818	Open in IMG/M
3300031962\|Ga0307479_11987824	Not Available	530	Open in IMG/M
3300032055\|Ga0318575_10153392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1145	Open in IMG/M
3300032067\|Ga0318524_10614392	Not Available	572	Open in IMG/M
3300032076\|Ga0306924_10273785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1939	Open in IMG/M
3300032090\|Ga0318518_10070623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1701	Open in IMG/M
3300032090\|Ga0318518_10600956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300032091\|Ga0318577_10201731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	951	Open in IMG/M
3300032094\|Ga0318540_10311620	Not Available	759	Open in IMG/M
3300032261\|Ga0306920_102011658	Not Available	809	Open in IMG/M
3300033290\|Ga0318519_10500954	Not Available	731	Open in IMG/M
3300034690\|Ga0364923_0003027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3470	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.34%
Host-Associated	Host-Associated	14.66%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.76%
Plants	Host-Associated → Plants	14.66%
Aquatic	Environmental → Aquatic	2.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.17%
Roots	Host-Associated → Plants → Roots	2.59%
Sediment	Environmental → Aquatic → Sediment	1.72%
Freshwater	Environmental → Aquatic → Freshwater	0.86%
Floodplain	Environmental → Terrestrial → Floodplain	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.90%
Loam	Environmental → Terrestrial → Soil → Loam	6.03%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.72%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.72%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.86%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	43.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.72%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.86%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.21%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.72%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.72%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.86%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300001989	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5	Host-Associated	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014296	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03193850	2088090014	Soil	MLAPDEKLKLSPKPYLSATAHFASGTDTPRDFLERCLADLAALEPKI
deepsgr_02321940	2199352025	Soil	MLAPDEKLKLSPKPYLSATPGFTGGTDTPRDFLERCLADLAALEPK
AF_2010_repII_A1DRAFT_100045916	3300000597	Forest Soil	MLAPEDKPKLATKPYLAATARFANSADTPRDFLERCLADLAALE
AF_2010_repII_A001DRAFT_100134833	3300000793	Forest Soil	MLAPEDKPKLATKPYLAATARFANSADTPRDFLER
AP72_2010_repI_A100DRAFT_10423752	3300000837	Forest Soil	MLAPDEKLKFSPKPYLSATGRFASGADTPRDFLERCLADLAAL
JGI24739J22299_101785432	3300001989	Corn Rhizosphere	MLAQDDKLKLSPKPYLSATPGFAKGADTPRDFLERC
Ga0062386_1002571211	3300004152	Bog Forest Soil	MLAPEEKLKLSPKPYLSVTRRFVDGADSPREFLERCLADLSMLEP
Ga0062595_1016822892	3300004479	Soil	MLAPEDKLKFTPKPYLSATARFANGGDTPRDFLERCLADLAALEPKI
Ga0066690_103312063	3300005177	Soil	MLAPDEKLKLSPKPYLSATARFASGADTPRDFLERCLADIAALEPKIG
Ga0066689_103852501	3300005447	Soil	MLAPDEKLKLSPKPYLSATARFKTGSETPRDFLERCLAEIEE
Ga0066905_1006522403	3300005713	Tropical Forest Soil	MLAPEETLKLSTKPYLSATPRFAGGSDTPREFLERCLADL
Ga0066905_1012074551	3300005713	Tropical Forest Soil	MLAPDEKLKLSPKPYLSATARFASGADTPRDFLER
Ga0066903_1030342381	3300005764	Tropical Forest Soil	MLAPEDKLKFTPKPYLAATARFASGGDTPRDFLERCLADL
Ga0066903_1050660262	3300005764	Tropical Forest Soil	MLAPDEKLKLSPKPYLSATARFTSGADTPRDFLERCLADIAALEPKIG
Ga0068860_1016666491	3300005843	Switchgrass Rhizosphere	MLAPDEKLKLSPKPYLSATPRFASGADTPRDFLERCLADLAALEP
Ga0075368_103238863	3300006042	Populus Endosphere	MLAQDDKLKLSPKPYLSAAQGFAKGAGTPRDFLERCLADLAALEPRI
Ga0075417_102353011	3300006049	Populus Rhizosphere	MLAPDETLKLSTKPYLSATPRFAGGSDTPREFLERCLADLAALEPKIGAF
Ga0075364_102315353	3300006051	Populus Endosphere	MLAPEETLKLSTKPYLSATPRFAGGSDTPREFLERCLADLAALEPK
Ga0066660_101949431	3300006800	Soil	MLAPDEKLKLSPKPYLSATARFKTGSETPRDFLERCLAEI
Ga0075431_1021775501	3300006847	Populus Rhizosphere	MLAPDEKMKLSPKPYLSATAHFANGTDTPRDFLERC
Ga0075433_109770243	3300006852	Populus Rhizosphere	MLAQDDKLKLSPKPYLSAAPGFAKGADTPRDFLERCLADLAALEP
Ga0075425_1002126674	3300006854	Populus Rhizosphere	MLAPDEKLKLSPKPYLSATPRFASGADTPRDFLERCLADL
Ga0075424_1009313671	3300006904	Populus Rhizosphere	MLAPDEKLKFVEKPYLAAAARFASGADTPRHFLERCLADIDRLEP
Ga0074063_142405083	3300006953	Soil	MLAPDEKLKLSPKPYLSATARFASGADTPRDFLERCLA
Ga0099791_106097862	3300007255	Vadose Zone Soil	MTMLAPEEKLKLSTRPYLSATRRFADGSDSPREFLERCLAEIAALEPKIREFC
Ga0099795_102784732	3300007788	Vadose Zone Soil	MLAPDEKLKLSPKPYLSATARFASGAATPRDFLERCLADLA
Ga0099830_104746422	3300009088	Vadose Zone Soil	MLAPDDKLKFSVKPYLAATPRFASGADTPRDFLERCLAD
Ga0099830_107483021	3300009088	Vadose Zone Soil	MTMLAPDEKLKLSPRPYLAATIGFANGADTPRDVLERCLAELAALEPKIGA
Ga0075418_117215482	3300009100	Populus Rhizosphere	MLAPDQKLKLTARPYLPATPRFASGEDTPRDFLERCLADL
Ga0114129_100402117	3300009147	Populus Rhizosphere	MLAPDEKLKLSPKPYLSATARFKRGEDTPRDFLERCLADLAALEP
Ga0126374_115574151	3300009792	Tropical Forest Soil	MLAPEEKLKLATKPYLASTARFSNGADTPRDFLERCLADLAA
Ga0126374_117569431	3300009792	Tropical Forest Soil	MLAPDEKLKLSPKPYLSATARFATGADTPRDFLERCLADLAALEPKI
Ga0126382_100877084	3300010047	Tropical Forest Soil	MLAPEETLKLSTKPYLSATPRFAGGSDTPREFLERCLA
Ga0126382_102285033	3300010047	Tropical Forest Soil	MLAPEDKLKLVPKPYLEATARFANGVDRPRDFLERCLADLATLEPK
Ga0126373_108770213	3300010048	Tropical Forest Soil	VKRAAEGIAMLAPDEKLKLSPKPYLSATARFASGVDTPRDFLERCLADVAALEPKIGAFVNL
Ga0126381_1022859121	3300010376	Tropical Forest Soil	MLAPDEKLKLSPKPYLSATARFASGADTPRDFLERCLADI
Ga0134123_107084223	3300010403	Terrestrial Soil	MLAPDEKLKLSPKPYLSATAHFASGTDTPRDFLERCLADLAALEPKIG
Ga0137383_104209093	3300012199	Vadose Zone Soil	MLVPDEKLKLSPKPYLSATARFASGADTPRDFLERCLADIAALEPK
Ga0137379_112085881	3300012209	Vadose Zone Soil	MLAPDEKLKLSPKPYLSATARFKSGDDTPRDFLERC
Ga0137387_110773471	3300012349	Vadose Zone Soil	MLAPDEKLKLSPKPYLSATARFKTGSETLRDFLERCLAEIAALDPKIGAFVNLNPEGA
Ga0137384_106090251	3300012357	Vadose Zone Soil	MLAPEEKLKLATKPYLATTARFANGADTPRDFLERCLADLAAL
Ga0137368_109009991	3300012358	Vadose Zone Soil	MLAPDEKLKLSPKPYLSATARFKSGADTPRDFLERCLAD
Ga0137359_100007861	3300012923	Vadose Zone Soil	MLAPEEKLKLATKPYLATTARFANGADTPRDFLERCL
Ga0137419_118358162	3300012925	Vadose Zone Soil	MLAPDEKLKLSPKPYLSATPGFAGGADTPRDFLERCLADLAALE
Ga0126375_120364082	3300012948	Tropical Forest Soil	MLAPDATLKLATKPYLSATANFASGSDTPRQFLERCLADLAALEPKIG
Ga0164303_114301021	3300012957	Soil	MLAPDEKLKLSPKPYFSATTGFASGADTPRDFLERCL
Ga0126369_105621981	3300012971	Tropical Forest Soil	MLAPEEKLRLSPKPYLSATARFASGADTPRDFLERC
Ga0126369_129144342	3300012971	Tropical Forest Soil	MLAPEEKLKLVPKPYLDATARFASGADTPRDFLER
Ga0164305_105484523	3300012989	Soil	MLAPDEKLKLSPKPYLSATAHFASGTDTPRDFLERCLADL
Ga0075344_11468562	3300014296	Natural And Restored Wetlands	MPSSDEKLKLSPKPYLSATAAFAGGADTPRDFLERCLADL
Ga0182036_102420911	3300016270	Soil	MLAPEEKLKLVQKPYLDATARFANGADTPRDFLERCLADLA
Ga0182041_102263383	3300016294	Soil	MLAPDEKLKLSPKPYLSATARFASGVDTPRDFLERCLADIA
Ga0182033_100733011	3300016319	Soil	MLAPEEKLKLVPKPYLDATARFANGADTPRDFLERCLADL
Ga0182033_101458181	3300016319	Soil	MLAPEEKLKLSPKPYLAATHRFADGSGSTREFLERCLAV
Ga0182033_101780874	3300016319	Soil	MLAPEEKLKLARKPYLAATGQFGDGSDSPRQLLERCLAD
Ga0182033_108976812	3300016319	Soil	MLAPDEKLKLSSKPYLSATARFASGADTPRDFLERCLADVAALEP
Ga0182032_101932701	3300016357	Soil	MLAPDEKLKLSPKPYLSATARFASSADTPRDFLERCLADIAALEPKIGAFV
Ga0182032_120141101	3300016357	Soil	MLAPEEKRKLATKPYLSATRRFADGSDSPRQFLERCL
Ga0182034_103309532	3300016371	Soil	MLAPEEKLKLVQKPYLDATARFANGADTPRDFLERCLADL
Ga0182038_101489691	3300016445	Soil	VLAPEDKLKFSMKPYLAATARFASGADTPRDFLERC
Ga0184620_100058324	3300018051	Groundwater Sediment	MLAPDEKLKLSPKPYLSATPGFAGGADTPRDFLERCLADLA
Ga0210407_113327202	3300020579	Soil	MLAPDEKLKLSPKPYFSATARFTSGADTPRDFLERC
Ga0213876_104494121	3300021384	Plant Roots	MLAPDEKLKFAEKPYLASTARFASGADTPRDFLERCVADIDRLEPGIGAF
Ga0222622_112460081	3300022756	Groundwater Sediment	MLAPDEKLKLSPKPYLSTTPGFAGGADTPRDFLERCLADLAALEPKI
Ga0207647_100543344	3300025904	Corn Rhizosphere	MLAQDDKLKLSPKPYLSATPGFAKGADTPRDFLERCLVDLA
Ga0207699_101790482	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MTATDTKMKPVMRPYLSETARFASGKDSPRDFLERCLT
Ga0207693_110519043	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MLAPEEKLKLATKPYLATTARFANGADTPRDFLERCLADLAALEPK
Ga0207676_112343513	3300026095	Switchgrass Rhizosphere	MLAPDDKLKLSPKPYLPATPAFANGADTPRAFLERCLADL
Ga0207675_1001712391	3300026118	Switchgrass Rhizosphere	MLAPDEKLKLSPKPYLSATAHFASGTDTPRDFLELCLADLA
Ga0209647_12061183	3300026319	Grasslands Soil	MLAPEEKLKLATKPYLATTARFANGADTPRDFLERCLAD
Ga0209058_10212151	3300026536	Soil	MLAPDEKLKLSPKPYLSATARFKTGSETPRDFLERCLAEIAALDPKIGA
Ga0209577_100429051	3300026552	Soil	MLAPDEKLKLSPKPYLSATARFKTGSETPRDFLERCLAEIAALDPKIGAFVNL
Ga0209325_10089353	3300027050	Forest Soil	MLAPDEKLKLSPKPYLSATAGFASGADTPRKFLERCLADIAALEP
Ga0208890_10617762	3300027523	Soil	MLAQDDKLKLSPKPYLSATPGFAKGADTPRDFLER
Ga0207428_106124253	3300027907	Populus Rhizosphere	MLAPDEKLKLSPKPYLSATARFASGADTPRDFLERC
Ga0268264_124839672	3300028381	Switchgrass Rhizosphere	MLAPDEKLKLSPKPYLSATPRFASGADTPRDFLERCLAD
Ga0307286_100939171	3300028876	Soil	MLAPDEKLKLSPKPYLSTTPGFAGGADTPRDFLERCL
Ga0308200_11203452	3300030905	Soil	MLAPDEKLKLSPKPYLSATSNFAGGADTPRDFLERC
Ga0307498_103590681	3300031170	Soil	MLAQDDKLKLSPKPYLSAAPGFAKGADTPRDFLERCLAD
Ga0318516_100511721	3300031543	Soil	MLAPDEKLKLSPKPYLSGTARFANGADTPRDFLERCLADIVA
Ga0318516_105757071	3300031543	Soil	MLAPEEKLKLSHKPYLSACPRFADGSDTPRQFLERCLADIAALEP
Ga0318534_103782002	3300031544	Soil	MLAPDEKLKLSPKPYLSATARFASGADTPRDFLERCL
Ga0318538_102575603	3300031546	Soil	MLAPDEKLKLSPKPYLSATARFASGVDTPRDFLERCLADIAA
Ga0318538_102597034	3300031546	Soil	MLAPDEKLKLSPKPYLSATARFASGADTPRDFLERCLADIAALE
Ga0318573_100577051	3300031564	Soil	MLAPEEKLKLSPKPYLSACPRFADGSDTPRQFLERCLADI
Ga0310915_104196173	3300031573	Soil	VLAPDEKLKLSPKPYLSATARFASGVDTPRDFLERCLADIAA
Ga0318555_100662323	3300031640	Soil	MLAPDEKLKLSPKPYLSATARFANGADTPRDFLERCLADI
Ga0318492_101712941	3300031748	Soil	MLAPDEKLKLSPKPYLSATARFTSGADTPRDFLERCL
Ga0307475_108831211	3300031754	Hardwood Forest Soil	MLAPDEKLKLSPKPYFSATARFTSGADTPRDFLERCL
Ga0318554_103009843	3300031765	Soil	MLAPEEKLKLSPKPYLAATHRFADGSGSPREFLERCLAVISELEP
Ga0318521_101027901	3300031770	Soil	MLAPEDKLKLVPKPYLEATARFANGADRPRDLLERCLADLAALEPKIGAFVH
Ga0318521_104245811	3300031770	Soil	MLAPEEKLKLSPKPYLAATHRFADGSGSPREFLERCLAVISE
Ga0318543_100936461	3300031777	Soil	MLAPDEKLKLSPKPYLSATARFASGADTPRDFLERCLADIAALEPK
Ga0318508_11442561	3300031780	Soil	MLAPEEKLKLSPKPYLPACPRFADGSDTPRQFLERCLADISALEPK
Ga0318547_107720182	3300031781	Soil	MLAPEDKPKLATKPYLAATARFANSADTPRDFLERCLAD
Ga0318552_101991331	3300031782	Soil	MLAPDEKLKLSPKPYLSATARFTSGADTPRDFLERCLAD
Ga0318548_100292734	3300031793	Soil	MLAPEEKLRLSPKPYLSATARFASGADTPRDFLERCLA
Ga0318548_105130451	3300031793	Soil	MLAPDEKLKLSPKPYFSATARFTSGADTPRDFLERCLADIAALEPK
Ga0318550_104445311	3300031797	Soil	MLAPEEKLKLSPKPYLAATHRFADGSGSPREFLERT
Ga0318565_101407541	3300031799	Soil	MLAPEEKLRLSPKPYLSATARFASGADTPRDFLERCLADVAAL
Ga0318567_105964571	3300031821	Soil	MLAPEEKLKLVSRPYLAITPRFKDGSASPREFLEGCLANVK
Ga0318517_100304271	3300031835	Soil	MLAPEDKLKLVPKPYLEATARFANGADRPRDLLERCLADLAALEPKIG
Ga0318536_104732641	3300031893	Soil	MLAPEEKLKLAGKPYLTMTPRFKDGSASPREFLEGCL
Ga0306921_112609701	3300031912	Soil	MLAPEEKLKLSPKPYLSACPRFADGSDTPRQFLERCLADIA
Ga0310912_100072658	3300031941	Soil	MLAPEEKLKLATKPYLGATAHFANGADSPRDFLERCLADLAALEPKIG
Ga0307479_119878241	3300031962	Hardwood Forest Soil	MLAPDEKLKLSPKPYFSATARFASAADTPRDFLERCLAD
Ga0318575_101533921	3300032055	Soil	MLAPEDKLKLVPKPYLEATARFANGADRPRDLLERCLADLAALEPKIGAFVHLN
Ga0318524_106143922	3300032067	Soil	MLAPDEKLKLSPKPYLSATARFASGADTPRDFLERCLAD
Ga0306924_102737851	3300032076	Soil	MLAPEEKLKLVSRPYLAITPRFKDGSASPREFLEGCLANV
Ga0318518_100706234	3300032090	Soil	MLAPEEKLKLSPKPYLSACPRFADGSDTPRQFLERCLADISALEPKI
Ga0318518_106009562	3300032090	Soil	MLAPEDKPKLATKPYLAATARFANSADTPRDFLERCLADLA
Ga0318577_102017312	3300032091	Soil	MLAPEEKLKLVPKPYLDATARFANGADTPRDFLERCLA
Ga0318540_103116203	3300032094	Soil	MLAPDEKLKLSPKPYLSATARFTSGADTPRDFLERCLADVVALEPK
Ga0306920_1020116581	3300032261	Soil	MLAPEEKLKLAPKPYLAAVERFGNGSDSPREFLEHC
Ga0318519_105009542	3300033290	Soil	MTMLAPEEKLKLVSRPYLAITPRFKDGSASPREFLEGCLA
Ga0364923_0003027_2_127	3300034690	Sediment	MTMLAPEEKLKLASKPYLAMTPRFADGSDSPRKFLERCLADL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078440

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences