Metagenome / Metatranscriptome Family F078307

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078307
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	43 residues
Representative Sequence	MTAAKGFVVPAGGGKHHASPTPGRFFDLKLFGRETGDSIML
Number of Associated Samples	95
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.26 %
% of genes near scaffold ends (potentially truncated)	98.28 %
% of genes from short scaffolds (< 2000 bps)	90.52 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.207 % of family members)
Environment Ontology (ENVO)	Unclassified (44.828 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.724 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 21.74% Coil/Unstructured: 78.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00903	Glyoxalase	9.48
PF13649	Methyltransf_25	4.31
PF00239	Resolvase	3.45
PF03466	LysR_substrate	2.59
PF02224	Cytidylate_kin	1.72
PF00536	SAM_1	1.72
PF04828	GFA	1.72
PF03061	4HBT	1.72
PF00561	Abhydrolase_1	1.72
PF00072	Response_reg	0.86
PF03693	ParD_antitoxin	0.86
PF00106	adh_short	0.86
PF08028	Acyl-CoA_dh_2	0.86
PF13432	TPR_16	0.86
PF01979	Amidohydro_1	0.86
PF01042	Ribonuc_L-PSP	0.86
PF07681	DoxX	0.86
PF00067	p450	0.86
PF10137	TIR-like	0.86
PF00296	Bac_luciferase	0.86
PF10282	Lactonase	0.86
PF07883	Cupin_2	0.86
PF07690	MFS_1	0.86
PF01274	Malate_synthase	0.86
PF13378	MR_MLE_C	0.86
PF09849	DUF2076	0.86
PF12973	Cupin_7	0.86
PF04143	Sulf_transp	0.86
PF00126	HTH_1	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	3.45
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	3.45
COG0283	Cytidylate kinase	Nucleotide transport and metabolism [F]	1.72
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.72
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.86
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.86
COG2124	Cytochrome P450	Defense mechanisms [V]	0.86
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.86
COG2225	Malate synthase	Energy production and conversion [C]	0.86
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.86
COG2391	Uncharacterized membrane protein YedE/YeeE, contains two sulfur transport domains	General function prediction only [R]	0.86
COG3609	Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domain	Transcription [K]	0.86
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.00 %
Unclassified	root	N/A	25.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.00 %
Unclassified	root	N/A	25.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.00 %
Unclassified	root	N/A	25.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.07 %
Unclassified	root	N/A	25.00 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.72 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	29.31 %
Unclassified	root	N/A	25.00 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.72 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.86 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.17 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.31 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.59 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.72 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.86 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.86 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.00 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.59 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.72 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.72 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.86 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.00 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.59 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.86 %
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	0.86 %
Lichenicola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Lichenicola	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.00 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.59 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.72 %
unclassified Acidisphaera	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera	0.86 %
Lichenicola cladoniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Lichenicola → Lichenicola cladoniae	0.86 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.00 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.59 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.72 %
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	0.86 %
Lichenicola cladoniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Lichenicola → Lichenicola cladoniae	0.86 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004092\|Ga0062389_103090985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	623	Open in IMG/M
3300004092\|Ga0062389_104554050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300004633\|Ga0066395_10927273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	528	Open in IMG/M
3300005177\|Ga0066690_10472422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	847	Open in IMG/M
3300005179\|Ga0066684_10986403	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005541\|Ga0070733_10331013	All Organisms → cellular organisms → Bacteria → Proteobacteria	1008	Open in IMG/M
3300005618\|Ga0068864_102240560	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300005764\|Ga0066903_105004399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Lichenicola → Lichenicola cladoniae	703	Open in IMG/M
3300006031\|Ga0066651_10839198	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300006057\|Ga0075026_100326092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	845	Open in IMG/M
3300006904\|Ga0075424_100760819	Not Available	1034	Open in IMG/M
3300007258\|Ga0099793_10268342	Not Available	826	Open in IMG/M
3300009012\|Ga0066710_102993028	Not Available	658	Open in IMG/M
3300009090\|Ga0099827_11837647	Not Available	528	Open in IMG/M
3300009101\|Ga0105247_10807444	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300009101\|Ga0105247_11730595	Not Available	518	Open in IMG/M
3300009176\|Ga0105242_11625405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	680	Open in IMG/M
3300009826\|Ga0123355_11832878	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300010048\|Ga0126373_10269175	All Organisms → cellular organisms → Bacteria → Proteobacteria	1685	Open in IMG/M
3300010362\|Ga0126377_12242724	Not Available	622	Open in IMG/M
3300010371\|Ga0134125_10981637	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300010398\|Ga0126383_13610963	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300012202\|Ga0137363_11253785	Not Available	629	Open in IMG/M
3300012349\|Ga0137387_10681322	Not Available	744	Open in IMG/M
3300012357\|Ga0137384_10997762	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300012922\|Ga0137394_10681134	Not Available	866	Open in IMG/M
3300012923\|Ga0137359_11473440	Not Available	569	Open in IMG/M
3300014654\|Ga0181525_10764930	Not Available	544	Open in IMG/M
3300016270\|Ga0182036_11088043	Not Available	661	Open in IMG/M
3300016270\|Ga0182036_11341421	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300016294\|Ga0182041_11180904	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300016319\|Ga0182033_11550129	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300016319\|Ga0182033_11725809	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300016341\|Ga0182035_12030063	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300016371\|Ga0182034_10066870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2449	Open in IMG/M
3300016371\|Ga0182034_11865915	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300016387\|Ga0182040_10077723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2176	Open in IMG/M
3300016404\|Ga0182037_10063013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2532	Open in IMG/M
3300016404\|Ga0182037_12118153	Not Available	506	Open in IMG/M
3300016422\|Ga0182039_11851013	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300018007\|Ga0187805_10172652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	985	Open in IMG/M
3300018047\|Ga0187859_10794285	Not Available	543	Open in IMG/M
3300018468\|Ga0066662_11706468	All Organisms → cellular organisms → Bacteria → Proteobacteria	659	Open in IMG/M
3300019279\|Ga0184642_1264665	Not Available	573	Open in IMG/M
3300020579\|Ga0210407_10053552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3017	Open in IMG/M
3300020579\|Ga0210407_10565180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	887	Open in IMG/M
3300020583\|Ga0210401_10233192	Not Available	1699	Open in IMG/M
3300021088\|Ga0210404_10841109	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300021170\|Ga0210400_11476409	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300021178\|Ga0210408_10644477	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300021180\|Ga0210396_10388484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1228	Open in IMG/M
3300021372\|Ga0213877_10127153	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300021401\|Ga0210393_11036093	Not Available	664	Open in IMG/M
3300021403\|Ga0210397_10209434	All Organisms → cellular organisms → Bacteria → Proteobacteria	1397	Open in IMG/M
3300021405\|Ga0210387_10799356	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300021406\|Ga0210386_10776193	Not Available	824	Open in IMG/M
3300021420\|Ga0210394_11772174	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	515	Open in IMG/M
3300021475\|Ga0210392_10542025	All Organisms → cellular organisms → Bacteria → Proteobacteria	860	Open in IMG/M
3300021478\|Ga0210402_10079906	All Organisms → cellular organisms → Bacteria	2907	Open in IMG/M
3300021478\|Ga0210402_11092167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	725	Open in IMG/M
3300021560\|Ga0126371_10577794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1273	Open in IMG/M
3300021560\|Ga0126371_10916321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1020	Open in IMG/M
3300021560\|Ga0126371_11603173	Not Available	777	Open in IMG/M
3300021560\|Ga0126371_11821143	Not Available	730	Open in IMG/M
3300022504\|Ga0242642_1057581	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300025916\|Ga0207663_10742270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	779	Open in IMG/M
3300027882\|Ga0209590_10268893	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300028379\|Ga0268266_12031146	Not Available	548	Open in IMG/M
3300031231\|Ga0170824_102048957	Not Available	2163	Open in IMG/M
3300031234\|Ga0302325_10737858	All Organisms → cellular organisms → Bacteria → Proteobacteria	1407	Open in IMG/M
3300031236\|Ga0302324_103331223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	525	Open in IMG/M
3300031469\|Ga0170819_18056365	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300031524\|Ga0302320_10054302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	7057	Open in IMG/M
3300031544\|Ga0318534_10795709	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300031546\|Ga0318538_10274667	Not Available	907	Open in IMG/M
3300031561\|Ga0318528_10057604	All Organisms → cellular organisms → Bacteria	1977	Open in IMG/M
3300031668\|Ga0318542_10625807	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300031680\|Ga0318574_10538383	Not Available	684	Open in IMG/M
3300031719\|Ga0306917_10053468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2727	Open in IMG/M
3300031719\|Ga0306917_11317617	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300031744\|Ga0306918_10154238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1699	Open in IMG/M
3300031744\|Ga0306918_10286144	All Organisms → cellular organisms → Bacteria	1266	Open in IMG/M
3300031748\|Ga0318492_10415717	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	708	Open in IMG/M
3300031751\|Ga0318494_10574620	Not Available	658	Open in IMG/M
3300031753\|Ga0307477_10323939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1062	Open in IMG/M
3300031754\|Ga0307475_10358903	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300031768\|Ga0318509_10534136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	655	Open in IMG/M
3300031770\|Ga0318521_10209731	Not Available	1127	Open in IMG/M
3300031770\|Ga0318521_10258200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1018	Open in IMG/M
3300031780\|Ga0318508_1151875	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300031782\|Ga0318552_10191673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1033	Open in IMG/M
3300031782\|Ga0318552_10250210	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300031794\|Ga0318503_10108251	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300031833\|Ga0310917_10009241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5320	Open in IMG/M
3300031846\|Ga0318512_10749127	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300031859\|Ga0318527_10236265	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	776	Open in IMG/M
3300031860\|Ga0318495_10083140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1434	Open in IMG/M
3300031879\|Ga0306919_10410521	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300031890\|Ga0306925_12075082	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300031893\|Ga0318536_10090159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1528	Open in IMG/M
3300031897\|Ga0318520_10130410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1440	Open in IMG/M
3300031910\|Ga0306923_11370740	All Organisms → cellular organisms → Bacteria → Proteobacteria	746	Open in IMG/M
3300031912\|Ga0306921_10184421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2446	Open in IMG/M
3300031912\|Ga0306921_10390333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1625	Open in IMG/M
3300031912\|Ga0306921_11443497	All Organisms → cellular organisms → Bacteria → Proteobacteria	755	Open in IMG/M
3300031912\|Ga0306921_12030321	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300031941\|Ga0310912_11108625	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300031946\|Ga0310910_10571755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	896	Open in IMG/M
3300032001\|Ga0306922_10865820	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300032001\|Ga0306922_11022458	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300032060\|Ga0318505_10208106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	916	Open in IMG/M
3300032064\|Ga0318510_10035342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1699	Open in IMG/M
3300032064\|Ga0318510_10132322	Not Available	973	Open in IMG/M
3300032094\|Ga0318540_10209864	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300032261\|Ga0306920_102821056	Not Available	661	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.97%
Host-Associated	Host-Associated	6.03%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.93%
Aquatic	Environmental → Aquatic	6.03%
Plants	Host-Associated → Plants	5.17%
Arthropoda	Host-Associated → Arthropoda	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.34%
Freshwater	Environmental → Aquatic → Freshwater	5.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.31%
Peat	Environmental → Terrestrial → Peat	2.59%
Sediment	Environmental → Aquatic → Sediment	0.86%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.31%
Loam	Environmental → Terrestrial → Soil → Loam	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.45%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.59%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.86%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	62.07%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.52%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.45%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.41%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.59%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.72%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.86%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.86%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.86%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.86%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.86%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062389_1030909852	3300004092	Bog Forest Soil	VSAANGFVIPAGGGKQIDSPTPGRFFALKLLGRETGESIMMFEETLPAGAV*
Ga0062389_1045540501	3300004092	Bog Forest Soil	MSVANGFVIPADGGKRFDSPTPGRSFALKLLGRETDESIMM
Ga0066395_109272732	3300004633	Tropical Forest Soil	MSKVQGFVVPAGGGQHLDGLTPGGRFDLKLFGRDTGDSIMLFEEIAPAGRKSLY
Ga0066690_104724221	3300005177	Soil	MTVAKGFVVPAGGGKHFASPTPGRSLAMKLLGRETGESIMM
Ga0066684_109864032	3300005179	Soil	MIAVKGFVVPAGDGKHFASATPDRFFAMKLLGRETGESIMMFEETLPAGT
Ga0070733_103310133	3300005541	Surface Soil	MTAAKGFVIPAGGGKHFDAPTPGRSFALKLLGRETGESIM
Ga0068864_1022405601	3300005618	Switchgrass Rhizosphere	MTKGIVVPAGGGKRYQETPGRFFDLKLLTDQTGQSIMLFEETVPAGT
Ga0066903_1050043991	3300005764	Tropical Forest Soil	MSTAEGFVVPAGGGKHFNSPTPGRSFTMKLLGRETNESIMMFEESLP
Ga0066651_108391982	3300006031	Soil	MIAAKGFVVPAGDGKHFASATPGRFFAMKLLGRETGESIMMFEET
Ga0075026_1003260922	3300006057	Watersheds	MTATKGFIIPPGGGKHLDSPTPGRFFDLKLLGRDTGESIMMFEETLP
Ga0075424_1007608191	3300006904	Populus Rhizosphere	MSAAQGFVVPADGGKRFDSPTPGRSFALKLLGRETN
Ga0099793_102683423	3300007258	Vadose Zone Soil	MTATKGFVVPAGGGKRLDSPTQGRFFSLKLLGHETDQSIMMFE
Ga0066710_1029930282	3300009012	Grasslands Soil	MSAAEGFVIPAGGGKRFDSPTPGRSFAVKLLGRET
Ga0099827_118376471	3300009090	Vadose Zone Soil	MTAAKGFVVPAGGGKRFDSPTPGRFFALKLLGRETNESIMMFEETLP
Ga0105247_108074441	3300009101	Switchgrass Rhizosphere	MSIEGFVVPAGAGRHFNSPTPGRSFAMKLLGHETNESIMMFEETLP
Ga0105247_117305952	3300009101	Switchgrass Rhizosphere	MNAAKGFVIPAGGGKHIDSPTPGRSFHLKLLGRETNESI
Ga0105242_116254052	3300009176	Miscanthus Rhizosphere	MSTAEGFVVPPGGGKHFTSPTPGRSFAMKLLGRETNESIMMFEE
Ga0123355_118328781	3300009826	Termite Gut	MEVAMNETKGFVVPAGGGKRHASATPGRFFDLKLLGCETAD
Ga0126373_102691754	3300010048	Tropical Forest Soil	MTATRGFVVPAGGGKRLDSPTPGRSFSLKLLGHETDE
Ga0126377_122427241	3300010362	Tropical Forest Soil	MTAKGFVVPPGGGKHHASPAPGRFFDLKLLAAQTGDSIMLFEETLPAGTASLY
Ga0134125_109816371	3300010371	Terrestrial Soil	MTTAAKGFVVPAGGGKHFPSPTPGRSFAMKLLGRETGESVMMFEETL
Ga0126383_136109631	3300010398	Tropical Forest Soil	VVPAGCGKHFNSPTPGRFFALKLLGRETGESIMMFEETLPAGT
Ga0137363_112537851	3300012202	Vadose Zone Soil	MTATKGFVVPAGGGKHFDSPTPDRSFALKLLGRETDESIMMFEET
Ga0137387_106813222	3300012349	Vadose Zone Soil	MTAAKGFVVPSGGGKHLDSPTPGRSFAMKLLGRETGESIMLFEETLPA
Ga0137384_109977622	3300012357	Vadose Zone Soil	MTATKGFVVPAGGGKHHEMTSPGRSASLKLLGHETTESIM
Ga0137394_106811343	3300012922	Vadose Zone Soil	MTATKGFVVPAGGGKRLDSPTQGRFFSLKLLGHETDQSIMLF
Ga0137359_114734401	3300012923	Vadose Zone Soil	MTATKGFVVPAGGGKHFDSPTPDRSFALKLLGRETDESIM
Ga0181525_107649301	3300014654	Bog	MSAVKGFVVPADGGTHLASPTPGRWFDLKLLGRETGESIIMFE
Ga0182036_110880431	3300016270	Soil	MTAAKGFVVPAGGAKHHASPTPGRFFDLKLFGRETGDSIMLFEETLPPGTRSL
Ga0182036_113414211	3300016270	Soil	MTAAKGFVVPAGGGKRHASPTPGRFFDLKLFGRETGDSIMLFE
Ga0182041_111809042	3300016294	Soil	MTAAKGFVVPAGGGKHHASPSPGRFFDLKLFGRETGDSIMLFEETL
Ga0182033_115501291	3300016319	Soil	MGAAKGFVVPAGGGKHLNSPTPGRSFAMKLLGRETGESIMMFEETLP
Ga0182033_117258091	3300016319	Soil	MTAAKGFVVPAGGGKRHASPTPGRFFDLKLFGRETGDSI
Ga0182035_120300631	3300016341	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFDLKLFGRETGDSIMLFEETLPP
Ga0182034_100668703	3300016371	Soil	MTAAKGFVAPAGGGKHHASPTPGRFFDLKLFGRETGDSIMLFEE
Ga0182034_118659151	3300016371	Soil	MTATKGFVVPAGGGKHFDSPTPGRSFALKLLGRETS
Ga0182040_100777233	3300016387	Soil	MTAAKGFVAPAGGGKHHASPTPGRFFDLKLFGRETGD
Ga0182037_100630131	3300016404	Soil	MTAAKGFVAPAGGGKHHASPTPGRFFDLKLFGRETGDSIM
Ga0182037_121181532	3300016404	Soil	MTAAKGFVVPAGGAKHHASPTPGRFFDLKLFGRETGDSIMLFEETLP
Ga0182039_118510131	3300016422	Soil	MTAAKGFVVPAGGGKHHASPSPGRFFDLKLFGRETGDSIM
Ga0187805_101726521	3300018007	Freshwater Sediment	MTAARGFVVAAGGGKHFNSPTPGRHFALKLLGRETNESIML
Ga0187859_107942851	3300018047	Peatland	MSTAEGFVIPPGGGKHFKSPTPGRSFALKLLGRETN
Ga0066662_117064681	3300018468	Grasslands Soil	MTVAKGFVVPAGGGKHFASPTPGRSFAMKLLGRETGESI
Ga0184642_12646652	3300019279	Groundwater Sediment	MSTTDGSTAEGFVVPAGGGKHISSPTPGRFFDLKLLGRETNESIMMFEET
Ga0210407_100535521	3300020579	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFDLKLFGRETD
Ga0210407_105651803	3300020579	Soil	MTAPKGFVVPAGGGKHFDSPTPGRSFALKLLGRETNE
Ga0210401_102331921	3300020583	Soil	MTGAKGFVVPTGGGKHFASPTPGRSFAMKLLGRETGE
Ga0210404_108411091	3300021088	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFDLKLFGRETDDSTIL
Ga0210400_114764091	3300021170	Soil	MTATKGFVVPAGGGKHFDSPTPGRSFALKLLGRETSESIML
Ga0210408_106444772	3300021178	Soil	MSAAEGFVVPAGGGKRFDSPTPGRSFAMKLLGRETNEGIMMF
Ga0210396_103884841	3300021180	Soil	MSAAKGFVIPAGGGEHIESPTPGRFFDLKLLGCETDESIMMFEETLPA
Ga0213877_101271532	3300021372	Bulk Soil	MTPAKGFVVPAGRGKHFNSPTPGRSFALKLLGRETG
Ga0210393_110360931	3300021401	Soil	MTAAKGFIVPAGGGKHHASPTPGRFFDLKLFGRETGDSIML
Ga0210397_102094342	3300021403	Soil	MTPAKGFIVPAGGGTHFASATPGRFFDLKLLGRETGQSIMIFEESLPAGTTS
Ga0210387_107993561	3300021405	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFDLKLFGRETDDSIILFEETLPPGTRS
Ga0210386_107761932	3300021406	Soil	MTATKGFVVPAGGGKHFDSPTPGRSFALKLLGRETKESIMLFEE
Ga0210394_117721742	3300021420	Soil	MTTAKGFVVPTGGGKRLGSPTPGRFFDLKLLGHETNQ
Ga0210392_105420252	3300021475	Soil	MSAAEGFVVPAGGGKRFDSPTPGRSFAMKLLGRETNQ
Ga0210402_100799061	3300021478	Soil	MTVAKGFVVPTGGGKHFASPTPGRSFAMKLLGRET
Ga0210402_110921672	3300021478	Soil	MTAPKGFVVTPGGGKHFASPTPGRSFALKLLGRETGESIMMFEETLP
Ga0126371_105777941	3300021560	Tropical Forest Soil	MTKVKGFVVPAGGGKRLDSPTPGRSFALKLLGHET
Ga0126371_109163211	3300021560	Tropical Forest Soil	MTPAKGFVVPTGGGKHFASPTPGRSFAMKLLGRETGESIMMFEETLPAG
Ga0126371_116031731	3300021560	Tropical Forest Soil	MDATTGFVVPAGGGRHFSSPTPGRSFYLKLLGRETKESIMMFEE
Ga0126371_118211432	3300021560	Tropical Forest Soil	MSAAAGFVVPAGGGRHFDSPTPGRCFAMKVLGCET
Ga0242642_10575812	3300022504	Soil	MTAPKGFVVPAGGGKHFDSPTPGRSFALKLLGRETNESIMMFEET
Ga0207663_107422703	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MTATKGFVVPAGGGKHFHSPTPGRSFALKLLGRETNESIMLFE
Ga0207663_112363451	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSQRILKEDSDMTATKGFVVPPGGGKRLDSPTPGRFFDLKLLGRETGETIMMFEE
Ga0209590_102688931	3300027882	Vadose Zone Soil	MTAAKGFVVPAGGGKRFDSPTPGRFFALKLLGRETNESILMFEETLP
Ga0268266_120311461	3300028379	Switchgrass Rhizosphere	MTETNGFVIPAGGGKHFDSPTPGRSFALKLLGRDTGD
Ga0170824_1020489573	3300031231	Forest Soil	MTATKGFVIPPGGGKRFASPTPGRSFALKLLGRETGESIMMFEETLPA
Ga0302325_107378581	3300031234	Palsa	MTPAKGFVVQAGGGKHFDSPTPGRFFDLKLLGHKTNESIMLFEE
Ga0302324_1033312231	3300031236	Palsa	MTPAKGFVVQAGGGKHFDSPTPGRFFDLKLLGHKTNE
Ga0170819_180563652	3300031469	Forest Soil	MEDTNMTATKGFVVPAGGGKHFDSPTPGRSFALKLLGRETKESIM
Ga0302320_100543028	3300031524	Bog	MSAANGAVVPAGGGTHFASPTPGRSFALKLLGRDTDESIMM
Ga0318534_107957092	3300031544	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFDLKLFGRETGDSIML
Ga0318538_102746673	3300031546	Soil	MTAAKGFVVPAGGGKQHASPTPGRFFDLKLFGRETGDSIM
Ga0318528_100576041	3300031561	Soil	MTAAKGFVVLAGGGKHHASATPGRFFDLKLFGRETGDSIMLFEETLPPGTRS
Ga0318542_106258071	3300031668	Soil	MGAAKGFVVPAGGGKHFNSPTPGRSFAMKLFGRETGESIMMFE
Ga0318574_105383831	3300031680	Soil	MGAAKGFVVPAGGGKHFNSPTPGRSFAMKLLGRETGESI
Ga0306917_100534681	3300031719	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFDLKLFGRETGDSIIL
Ga0306917_113176171	3300031719	Soil	MGAAKGFVVPAGGGKHFNSPTPGRSFAKKLLGRETGESI
Ga0306918_101542381	3300031744	Soil	MGAAKGFVVPAGGGKHFNSPTPGRSFAMKLLGRETGES
Ga0306918_102861441	3300031744	Soil	MTAAKGFVVPAGGAKHHASPTPGRFFDLKLFGRETGDSIMLFEETQPLG
Ga0318492_104157171	3300031748	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFELKLFGRETGDSIM
Ga0318494_105746201	3300031751	Soil	MTAAKGFVVPAGGAKHHASPTPGRFFDLKLFGRETGDSIMLFEET
Ga0307477_103239393	3300031753	Hardwood Forest Soil	MTAPKGFVVPAGGGKHFDSPTPGRSFALKLLGRETNESIMMFEETLAAGT
Ga0307475_103589034	3300031754	Hardwood Forest Soil	MTATKGFVVPAGGGKHFDSPTPGRSFALKLLGRETNESI
Ga0318509_105341362	3300031768	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFDLKLFGRETGDSIMLFEETLP
Ga0318521_102097313	3300031770	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFDLKLFGRETGD
Ga0318521_102582002	3300031770	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFDLKLFGRETGDSII
Ga0318508_11518752	3300031780	Soil	MTAAKGFVVLAGGGKHHASATPGRFFDLKLFGRETGDSIM
Ga0318552_101916732	3300031782	Soil	MTAAKGFVAPAGGGKHHASPTPGRFFDLKLFGRETGDSIMLFEETLPPGTRSLYH
Ga0318552_102502102	3300031782	Soil	MTAAKGFVVLAGGGKHHASATPGRFFDLKLFGRETGDSIMLFEETLPPGTRSLYH
Ga0318503_101082512	3300031794	Soil	MTAAKGFVVPAGGGKRHASPTPGRFFDLKLFGRETGDS
Ga0310917_100092411	3300031833	Soil	MTAAKGFVAPAGGGKHHASPTPGRFFDLKLFGRETGDSIMLFEETL
Ga0318512_107491271	3300031846	Soil	MTATTGFVVPTGGGKHFASPTPGRSFAMKLLGRETGESIMMFEETLPAG
Ga0318527_102362651	3300031859	Soil	MTAAKGFVVPAGGAKHHASPTPGRFFDLKLFGRETGDSIM
Ga0318495_100831402	3300031860	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFDLKLFGRETGDSIILFEETLPPGTR
Ga0306919_104105211	3300031879	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFEFKLFGRETGDSIMLFE
Ga0306925_120750822	3300031890	Soil	MTAAKGFVVPAGGGKRHASPTPGRFFDLKLFGRETGDSIMLFEETLPPG
Ga0318536_100901591	3300031893	Soil	MTATRGFVVPAGGGKRLDSPTPGRSFSLKLLGHETDESIM
Ga0318520_101304102	3300031897	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFDLKLFGRET
Ga0306923_113707401	3300031910	Soil	MSTAKGFVIPAGGGKHFDSPAPGRSFALKLLGHETGESIMMFEE
Ga0306921_101844211	3300031912	Soil	MTAAKGFVVPAGGGKRHASPTPGRFFDLKLFGRETGDSIMLFEETLPPGTR
Ga0306921_103903331	3300031912	Soil	MGAAKGFVVPAGGGKHFNSPTPGRSFAMKLLGRETGESIMMFEETLP
Ga0306921_114434971	3300031912	Soil	MSTAKGFVIPAGGGKHFDSPAPGRSFALKLLGPETGESIM
Ga0306921_120303212	3300031912	Soil	MTAAKGFVVPAGGGKHHASPSPGRFFDLKLFGRETGDSIMLF
Ga0310912_111086251	3300031941	Soil	MTAAKGFVVPAGGAKHHASPTPGRFFDLKLFGRETGDSIMLFEETLPLGTRS
Ga0310910_105717551	3300031946	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFDLKLFGRETGDSIMLFEETLPPG
Ga0306922_108658201	3300032001	Soil	MTATKGFVVPAGGGKHFDSPTPGRSFALKLLGRETSESIMM
Ga0306922_110224582	3300032001	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFELKLFGRETRDSIML
Ga0318505_102081061	3300032060	Soil	MTAAKGFVAPAGGGKHHASPTPGRLFDLKLFGRETGDSIMLFE
Ga0318510_100353421	3300032064	Soil	MTAAKGFVVPAGGGKHHASPTPGRFFDLKLFGRETGDSIILFEET
Ga0318510_101323223	3300032064	Soil	MTAAKGFVVPAGGAKHHASPTPGRFFDLKLFGRETGDSIMLFEETLPLGTRSLYH
Ga0318540_102098642	3300032094	Soil	MTAAKGFVVPAGGAKHHASPTPGRFFDLKLFGRETGDSIMLFEETL
Ga0306920_1028210562	3300032261	Soil	MTASKGFVIPAGGGKRFESDTPGRFFDLTLLCDQTGQSIMMFEETL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078307

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences