Metagenome Family F078279

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078279
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	55 residues
Representative Sequence	MPDQNDDKREMRMMWIASAAVVLLILGAMGINMLVHHDTSAATPETSQSATPK
Number of Associated Samples	72
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.83 %
% of genes near scaffold ends (potentially truncated)	20.69 %
% of genes from short scaffolds (< 2000 bps)	86.21 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.655 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (38.793 % of family members)
Environment Ontology (ENVO)	Unclassified (46.552 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.68% β-sheet: 0.00% Coil/Unstructured: 54.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF02358	Trehalose_PPase	1.72
PF00034	Cytochrom_C	1.72
PF07486	Hydrolase_2	1.72
PF07995	GSDH	1.72
PF00239	Resolvase	1.72
PF03162	Y_phosphatase2	1.72
PF03401	TctC	0.86
PF02604	PhdYeFM_antitox	0.86
PF00196	GerE	0.86
PF04199	Cyclase	0.86
PF12071	DUF3551	0.86
PF01523	PmbA_TldD	0.86
PF00903	Glyoxalase	0.86
PF09084	NMT1	0.86
PF04226	Transgly_assoc	0.86
PF02661	Fic	0.86
PF00313	CSD	0.86
PF12852	Cupin_6	0.86
PF13406	SLT_2	0.86
PF13560	HTH_31	0.86
PF00753	Lactamase_B	0.86
PF09339	HTH_IclR	0.86
PF14136	DUF4303	0.86
PF02603	Hpr_kinase_N	0.86
PF07394	DUF1501	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	1.72
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.72
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	1.72
COG2365	Protein tyrosine/serine phosphatase Oca4	Signal transduction mechanisms [T]	1.72
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.72
COG3773	Cell wall hydrolase CwlJ, involved in spore germination	Cell cycle control, cell division, chromosome partitioning [D]	1.72
COG0312	Zn-dependent protease PmbA/TldA or its inactivated homolog	General function prediction only [R]	0.86
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.86
COG1493	Serine kinase of the HPr protein, regulates carbohydrate metabolism	Signal transduction mechanisms [T]	0.86
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.86
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.86
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.86
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.86
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.86
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.66 %
All Organisms	root	All Organisms	35.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.66 %
cellular organisms	root	All Organisms → cellular organisms	35.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.66 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.48 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.66 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.45 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.86 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.69 %
Oligoflexia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia	1.72 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.72 %
Candidatus Woesearchaeota	phylum	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota	0.86 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.66 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.72 %
Bdellovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales	1.72 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.86 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.86 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.66 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.62 %
unclassified Bdellovibrionales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales	1.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.72 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.86 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.86 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.86 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.86 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.66 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.76 %
Bdellovibrionales bacterium RBG_16_40_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales → Bdellovibrionales bacterium RBG_16_40_8	1.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.72 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.86 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.86 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.86 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.86 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.66 %
Bdellovibrionales bacterium RBG_16_40_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales → Bdellovibrionales bacterium RBG_16_40_8	1.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.72 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.86 %
Bradyrhizobium zhanjiangense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium zhanjiangense	0.86 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.86 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.86 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.86 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.66 %
Bdellovibrionales bacterium RBG_16_40_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales → Bdellovibrionales bacterium RBG_16_40_8	1.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.72 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.86 %
Bradyrhizobium zhanjiangense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium zhanjiangense	0.86 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.86 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.86 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.86 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100101108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2699	Open in IMG/M
3300002917\|JGI25616J43925_10069686	All Organisms → cellular organisms → Bacteria	1488	Open in IMG/M
3300004268\|Ga0066398_10009118	Not Available	1403	Open in IMG/M
3300004633\|Ga0066395_10365438	Not Available	805	Open in IMG/M
3300005332\|Ga0066388_100336609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2155	Open in IMG/M
3300005332\|Ga0066388_102582267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	925	Open in IMG/M
3300005332\|Ga0066388_103287030	Not Available	826	Open in IMG/M
3300005332\|Ga0066388_103848359	Not Available	766	Open in IMG/M
3300005332\|Ga0066388_104083447	Not Available	744	Open in IMG/M
3300005332\|Ga0066388_104229016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	732	Open in IMG/M
3300005332\|Ga0066388_104511997	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300005436\|Ga0070713_100500898	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300005439\|Ga0070711_101510396	Not Available	586	Open in IMG/M
3300005764\|Ga0066903_100180215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3113	Open in IMG/M
3300005764\|Ga0066903_100214177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2908	Open in IMG/M
3300005764\|Ga0066903_101443001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1296	Open in IMG/M
3300005764\|Ga0066903_105602108	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300005764\|Ga0066903_107380698	Not Available	568	Open in IMG/M
3300007255\|Ga0099791_10006877	All Organisms → cellular organisms → Bacteria → Proteobacteria	4700	Open in IMG/M
3300007258\|Ga0099793_10175450	Not Available	1022	Open in IMG/M
3300007258\|Ga0099793_10584642	Not Available	559	Open in IMG/M
3300007265\|Ga0099794_10200855	Not Available	1021	Open in IMG/M
3300007788\|Ga0099795_10109191	Not Available	1095	Open in IMG/M
3300007788\|Ga0099795_10117703	Not Available	1059	Open in IMG/M
3300007788\|Ga0099795_10156289	Not Available	938	Open in IMG/M
3300007788\|Ga0099795_10288976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	718	Open in IMG/M
3300009089\|Ga0099828_10200531	Not Available	1781	Open in IMG/M
3300009792\|Ga0126374_10393670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	966	Open in IMG/M
3300009792\|Ga0126374_10508344	Not Available	870	Open in IMG/M
3300009792\|Ga0126374_11475637	Not Available	557	Open in IMG/M
3300009792\|Ga0126374_11556907	Not Available	544	Open in IMG/M
3300009792\|Ga0126374_11766102	Not Available	516	Open in IMG/M
3300010046\|Ga0126384_11102027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300010046\|Ga0126384_12018880	Not Available	552	Open in IMG/M
3300010046\|Ga0126384_12302851	Not Available	520	Open in IMG/M
3300010049\|Ga0123356_11358740	Not Available	872	Open in IMG/M
3300010159\|Ga0099796_10206306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	799	Open in IMG/M
3300010358\|Ga0126370_10265222	Not Available	1341	Open in IMG/M
3300010358\|Ga0126370_10924074	Not Available	790	Open in IMG/M
3300010360\|Ga0126372_10265858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1483	Open in IMG/M
3300010360\|Ga0126372_10760186	Not Available	955	Open in IMG/M
3300010360\|Ga0126372_12103741	Not Available	612	Open in IMG/M
3300010361\|Ga0126378_10340695	Not Available	1608	Open in IMG/M
3300010362\|Ga0126377_11978408	Not Available	659	Open in IMG/M
3300010366\|Ga0126379_10203929	Not Available	1905	Open in IMG/M
3300010366\|Ga0126379_10530355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1254	Open in IMG/M
3300010366\|Ga0126379_12498634	Not Available	615	Open in IMG/M
3300010366\|Ga0126379_13411818	Not Available	532	Open in IMG/M
3300010376\|Ga0126381_102613048	Not Available	722	Open in IMG/M
3300010398\|Ga0126383_12762899	Not Available	573	Open in IMG/M
3300011269\|Ga0137392_10714250	Not Available	829	Open in IMG/M
3300012096\|Ga0137389_11121980	Not Available	674	Open in IMG/M
3300012189\|Ga0137388_10163585	Not Available	1981	Open in IMG/M
3300012199\|Ga0137383_10243419	Not Available	1318	Open in IMG/M
3300012202\|Ga0137363_11076808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	683	Open in IMG/M
3300012202\|Ga0137363_11769835	Not Available	510	Open in IMG/M
3300012202\|Ga0137363_11807413	Not Available	504	Open in IMG/M
3300012203\|Ga0137399_10518709	Not Available	1000	Open in IMG/M
3300012205\|Ga0137362_11542593	Not Available	551	Open in IMG/M
3300012361\|Ga0137360_10162739	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1780	Open in IMG/M
3300012361\|Ga0137360_10865920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	778	Open in IMG/M
3300012362\|Ga0137361_10103192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2485	Open in IMG/M
3300012362\|Ga0137361_10995406	Not Available	758	Open in IMG/M
3300012683\|Ga0137398_11141478	Not Available	535	Open in IMG/M
3300012917\|Ga0137395_10117850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1784	Open in IMG/M
3300012917\|Ga0137395_10158594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1553	Open in IMG/M
3300012924\|Ga0137413_11017534	Not Available	651	Open in IMG/M
3300012925\|Ga0137419_10095786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales → Bdellovibrionales bacterium RBG_16_40_8	2043	Open in IMG/M
3300012925\|Ga0137419_10810193	Not Available	766	Open in IMG/M
3300012927\|Ga0137416_10759658	Not Available	855	Open in IMG/M
3300012948\|Ga0126375_10296302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1121	Open in IMG/M
3300012948\|Ga0126375_11173488	Not Available	637	Open in IMG/M
3300012971\|Ga0126369_10081815	Not Available	2867	Open in IMG/M
3300012971\|Ga0126369_12413492	Not Available	612	Open in IMG/M
3300012971\|Ga0126369_13530465	Not Available	512	Open in IMG/M
3300015241\|Ga0137418_10180051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales → Bdellovibrionales bacterium RBG_16_40_8	1841	Open in IMG/M
3300015241\|Ga0137418_10967734	Not Available	619	Open in IMG/M
3300015241\|Ga0137418_11318732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	502	Open in IMG/M
3300015245\|Ga0137409_10095837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2757	Open in IMG/M
3300015245\|Ga0137409_10287337	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1449	Open in IMG/M
3300017970\|Ga0187783_10518598	Not Available	863	Open in IMG/M
3300020170\|Ga0179594_10066555	Not Available	1248	Open in IMG/M
3300021086\|Ga0179596_10128842	Not Available	1183	Open in IMG/M
3300021086\|Ga0179596_10153049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1098	Open in IMG/M
3300021404\|Ga0210389_10091104	Not Available	2344	Open in IMG/M
3300021476\|Ga0187846_10042112	All Organisms → cellular organisms → Bacteria	2038	Open in IMG/M
3300021476\|Ga0187846_10128626	Not Available	1079	Open in IMG/M
3300021476\|Ga0187846_10212766	Not Available	808	Open in IMG/M
3300021560\|Ga0126371_10218499	Not Available	2009	Open in IMG/M
3300021560\|Ga0126371_10592738	Not Available	1257	Open in IMG/M
3300021560\|Ga0126371_12763973	Not Available	595	Open in IMG/M
3300025916\|Ga0207663_11707727	Not Available	506	Open in IMG/M
3300025928\|Ga0207700_10652014	Not Available	939	Open in IMG/M
3300026304\|Ga0209240_1113506	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300026320\|Ga0209131_1063988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2030	Open in IMG/M
3300026481\|Ga0257155_1031524	Not Available	792	Open in IMG/M
3300026551\|Ga0209648_10005768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10621	Open in IMG/M
3300026557\|Ga0179587_10306060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium zhanjiangense	1025	Open in IMG/M
3300027512\|Ga0209179_1062370	Not Available	810	Open in IMG/M
3300027635\|Ga0209625_1008677	All Organisms → cellular organisms → Bacteria → Acidobacteria	2203	Open in IMG/M
3300027643\|Ga0209076_1113395	Not Available	767	Open in IMG/M
3300027654\|Ga0209799_1021834	Not Available	1404	Open in IMG/M
3300027655\|Ga0209388_1076179	All Organisms → cellular organisms → Bacteria → Proteobacteria	966	Open in IMG/M
3300027671\|Ga0209588_1254358	Not Available	536	Open in IMG/M
3300027874\|Ga0209465_10152836	Not Available	1146	Open in IMG/M
3300027874\|Ga0209465_10159476	Not Available	1121	Open in IMG/M
3300027903\|Ga0209488_10294686	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1212	Open in IMG/M
3300027908\|Ga0209006_11037003	Not Available	650	Open in IMG/M
3300028047\|Ga0209526_10115072	All Organisms → cellular organisms → Bacteria	1891	Open in IMG/M
3300028536\|Ga0137415_10693081	Not Available	831	Open in IMG/M
3300031715\|Ga0307476_10333497	Not Available	1115	Open in IMG/M
3300031720\|Ga0307469_10014321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4056	Open in IMG/M
3300031942\|Ga0310916_10567951	Not Available	965	Open in IMG/M
3300032180\|Ga0307471_103418978	Not Available	562	Open in IMG/M
3300032205\|Ga0307472_101073968	Not Available	760	Open in IMG/M
3300032261\|Ga0306920_102333582	Not Available	740	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.14%
Host-Associated	Host-Associated	0.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.14%
Arthropoda	Host-Associated → Arthropoda	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.55%
Cave	Environmental → Terrestrial → Cave	2.59%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.14%
Loam	Environmental → Terrestrial → Soil → Loam	21.55%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	2.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.86%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	63.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.10%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.45%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	2.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	38.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	25.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	14.66%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.59%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1001011082	3300002245	Forest Soil	MADQNDDKREMRVMWIASAVTVLVILGAMGINMLMHHDTNAATPETTQSPPK*
JGI25616J43925_100696862	3300002917	Grasslands Soil	MTDQNDDKREMRMMWIATAVVVLVILGGMRINMLVHHDTNAATPETTQSLPK*
Ga0066398_100091182	3300004268	Tropical Forest Soil	MMSPTHHNKVCAMAENDDDKREMRIMWIASAGIALLILGAMGINMLVHHDTSAATTETTRSPTESPK*
Ga0066395_103654382	3300004633	Tropical Forest Soil	MPDQNDDKSEMRIMWIASAVVALLILGAMGINMLIHHETSAATPETSQSPSDTPNPK*
Ga0066388_1003366092	3300005332	Tropical Forest Soil	MISPTHHNKVCAMADNDDDKHEMRIMWIASAGIALLILGAMGINMMIHHDTSAATTETTQSPTESPK*
Ga0066388_1025822673	3300005332	Tropical Forest Soil	KREMRMMWIFTAAVVLLILGAMGINMLVHHETSAAPTETIQSPTEPPK*
Ga0066388_1032870301	3300005332	Tropical Forest Soil	MMDQNNDKSEMRIMWIASAAVVLAILAAMGINVLVHHDTNAATPETSQSAPK*
Ga0066388_1038483591	3300005332	Tropical Forest Soil	MTDNNNDKREMRMMWIASAGIALLILGAMGINILVHHDTNAATPETTQSPK*
Ga0066388_1040834471	3300005332	Tropical Forest Soil	MPDQNDDKGEMRMMWIASAAVVLLILGAMGINMLVHHDTSAATPETSQSATPK*
Ga0066388_1042290162	3300005332	Tropical Forest Soil	MTPAHQKTRVCAMPDQNDDKREMRMMWIFSAAVVLLILGAMGINMLVHHETSAAPTETTQSPTEPPK*
Ga0066388_1045119971	3300005332	Tropical Forest Soil	MTVHRRRPSGNYVAPKTKVRVMSNHNDESEMRVMWIASAVIVLLILGAMGINMLVHHETSAATPETSQSSAEPPK*
Ga0070713_1005008982	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTDQNDDKHEMRIMWIASAVIVLIILGAMGVNMLVHHDTSVAPETTQPLPK*
Ga0070711_1015103961	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MADQNDDKHEMRIMWIASAVIVLIIRGAMGVNMLVHHDTSVAPETTQPLPK*
Ga0066903_1001802154	3300005764	Tropical Forest Soil	DQNDDKREMRMMWIASAAIALLILGAMGINMLVHHETSAAPTQTTQSPAEPPK*
Ga0066903_1002141774	3300005764	Tropical Forest Soil	MPNQNDDKNEMRVMWIASAAIALLILGAMGINMLVHHETGAATPDTSQSSTEPPK*
Ga0066903_1014430012	3300005764	Tropical Forest Soil	MPDQNDDKREMRMMWIASAAVVLLILGAMGINMLVHHDTSAATPETGQSTAPK*
Ga0066903_1056021082	3300005764	Tropical Forest Soil	MMSPTHQTRVCAMPDNNDDKREMRMMWIASVGIAILILGAMGINVLVHHDPSAAAPETTQSPTDSPK*
Ga0066903_1073806981	3300005764	Tropical Forest Soil	MTDQNDDKREMRIMWIASAAIALLILGAMGINMLVQHETSAAPAETTQSPTEPPK*
Ga0099791_100068777	3300007255	Vadose Zone Soil	MTDQNNDKSEMRMMWIASAAVVLVILAAMGINVLVHHDTNAATPETSQSAPK*
Ga0099793_101754502	3300007258	Vadose Zone Soil	MTDQNNDKSEMRMMWIARAAVVLVILAAMGINLLVHHDTNAATPETTQSSPK*
Ga0099793_105846422	3300007258	Vadose Zone Soil	CAMPDKNEDKREMRMMWIASAGIALLILGAMDINMLVHHDTSAATPETTQSPTESPK*
Ga0099794_102008552	3300007265	Vadose Zone Soil	LRARHEIILCLSNDKSEMRMMWIASAAVVLVIIAAMGINLLVHHDTNAATPETTQSSPK*
Ga0099795_101091912	3300007788	Vadose Zone Soil	MPDQNDDKREMRIMWIAAVAVVLLILGAMGINMLVHHETNAATPETSQSPTESPK*
Ga0099795_101177031	3300007788	Vadose Zone Soil	TRVCAMPDKNEDKREMRMMWIASAGIALLILGAMGINMLVHHDTSAATPETTQSPTESPK
Ga0099795_101562891	3300007788	Vadose Zone Soil	MTDQNNDKSEMRMMWIASAAVVLVILAAMGINLLVHHDTNAATPETTQSSPK*
Ga0099795_102889763	3300007788	Vadose Zone Soil	MTDQNDDKREMRMMWIATAVVVLVILGGMGINMLVHHDTNAATPETTQSLPK*
Ga0099828_102005312	3300009089	Vadose Zone Soil	MPDQNDDKREMRMMWIFSAAVVLLILGAMGINMLVHHGTSAATPEASGQSSTELPK*
Ga0126374_103936701	3300009792	Tropical Forest Soil	MISPTHHNKVCAMADNDDDKHEMRIMWIASAGIALLILGAMGINMMIHHDTSAATTETTQSPTESPK
Ga0126374_105083441	3300009792	Tropical Forest Soil	MPDQNDDKREMRMMWIASAAVVLLILGAMGINMLVHHDTSAATPETSQSATPK*
Ga0126374_114756371	3300009792	Tropical Forest Soil	MTDQNNDKREMRMMWIASAAIALLILGAMGINMLIHHETSAATSETSQLPTEPPK*
Ga0126374_115569071	3300009792	Tropical Forest Soil	PDQNDDKREMRMMWIFTAAVVLLILGAMGINMLVHHETSAAPTETIQSPTEPPK*
Ga0126374_117661021	3300009792	Tropical Forest Soil	MPDQNDNKREMRMMWIFSAAVVLLILGAMGINMLVHHDTNAAPAETTQSPTEPAK*
Ga0126384_111020271	3300010046	Tropical Forest Soil	VRVMSNHNDESEMRVMWIASAVIVLLILGAMGINMLVHHETSAATPETSQSSAEPPK*
Ga0126384_120188802	3300010046	Tropical Forest Soil	MRALQHQNDDKREMRIMWIAAAAVVLLILGAMGINMLVHHETNAATPETSQPSTESPK*
Ga0126384_123028511	3300010046	Tropical Forest Soil	MPNQNDDKNEMRVMWIASAAIALLILGAMGINMLVHHETSAAPEASQSSTEPPK*
Ga0123356_113587401	3300010049	Termite Gut	NNDDKREMRMMWIASVGIALAILGAMGINVLVHHDTSAAAPETSQSPTPK*
Ga0099796_102063062	3300010159	Vadose Zone Soil	MPDKNDDKREMRMMWIASAGIALLILGAMGINMLVHHDTSAATPETTQSPTESPK*
Ga0126370_102652223	3300010358	Tropical Forest Soil	MADDDNDKHEMRIMWIASAGIALLILGAMGINMLVHHDTSAATTETTQSPTEPPR*
Ga0126370_109240741	3300010358	Tropical Forest Soil	MTDNNIDKREMRMMWIASAGIALLILGAMGINILVHHDTSAATPETTQSPK*
Ga0126372_102658584	3300010360	Tropical Forest Soil	MPDQNDDKREMRMMWIFTAAVVLLILGAMGINMLVHHETSAAPAETIQSPTEPPK*
Ga0126372_107601863	3300010360	Tropical Forest Soil	MSRTKTRVRAMPKQNDDKSEMRMMWIASAAIVLLILGAMGINLLIHHGTSAATPEASGQPSTELPK*
Ga0126372_121037411	3300010360	Tropical Forest Soil	MPGENDDKREMRMMWIFSAAVVLLILGAMGINMLVHHDTNAAPAETTQSPTEPAK*
Ga0126378_103406953	3300010361	Tropical Forest Soil	MADDDNDKHEMRIMWIASAGIALLILGAMGINMLVHHDTSAATTETTQSPTEPPK*
Ga0126377_119784081	3300010362	Tropical Forest Soil	MSNHNDESEMRVMWIASAVIVLLILGAMGINMLVHHETSAATPETSQSSAEPPK*
Ga0126379_102039294	3300010366	Tropical Forest Soil	MPDQNDDQREMRIMWIASAAIALLILGAMGINMLVHHETSAAPAETTQSPTEPPK*
Ga0126379_105303553	3300010366	Tropical Forest Soil	MPDQNDDKREMRMMWIASAAIALLILGAMGINMLVHHETSAAPTQTTQSPAEPPK*
Ga0126379_124986341	3300010366	Tropical Forest Soil	MPDQNDDKGEMRMMWIASAAVVLLILGAMGINMLVHHDTSAATPETGQSTAPK*
Ga0126379_134118181	3300010366	Tropical Forest Soil	MPGQSDDKREMRMMWIFSVAVVLLLLGAMGINMLVHHETNAATPETNRSLTESPK*
Ga0126381_1026130481	3300010376	Tropical Forest Soil	MPDQNDDKREMRMMWIASAVIALLILGAMGINMLVHHETSAAPTQTTQSPAEPPK*
Ga0126383_127628991	3300010398	Tropical Forest Soil	MPGQNDDKREMRMMWIFSVAVVLLILGAMGINMLVHHETNAATPETNRSLTESPK*
Ga0137392_107142502	3300011269	Vadose Zone Soil	LRARHEIILCLSNDKSEMRMMWIASAAVVLVILAAMGINLLVHHDTNAATPETTQSSPK*
Ga0137389_111219801	3300012096	Vadose Zone Soil	MTDQHDDKREMRMMWIFSAVVVVVILAGMGINMLVHHDTNAATPETSQSPPR*
Ga0137388_101635852	3300012189	Vadose Zone Soil	MDQNDDKREMRMMWIFSAVVVVVILAGMGINLVVHHDTNAATPETSQSLPK*
Ga0137383_102434192	3300012199	Vadose Zone Soil	MPDQNDNKREMHMMWIFSVAVVLLILGAMGINMLVHHDTNAATPEASGQSSTDLPR*
Ga0137363_110768082	3300012202	Vadose Zone Soil	MPDKNEDKREMRMMWIASAGIALLILGAMGINMLVHHDTSAATPETTQSPTESPK*
Ga0137363_117698351	3300012202	Vadose Zone Soil	PPKTEVRAMTDQNNDKSEMRMTWIASAAVVLVILAAMGINLLVHHDTNAATPETTQSSPK
Ga0137363_118074131	3300012202	Vadose Zone Soil	MTDPNTEKSEMRIMWIASAVLVLVLLGGMGINMLMHHDTSAATPETSSQPPPK*
Ga0137399_105187091	3300012203	Vadose Zone Soil	MMDQHNDKREMRMMWIASAAVVFVILAGMGINMLMHHDTNAATPETSQSAPK*
Ga0137362_115425932	3300012205	Vadose Zone Soil	MPDQNDGKREMRMMWIFSAAVVLLILGAMGINMLVHHETSAAPTETTQSPTEPPK*
Ga0137360_101627391	3300012361	Vadose Zone Soil	MTDQNNDKSEMRMTWIASAAVVLVILAAMGINLLVHHDTNAATPETTQSSPK*
Ga0137360_108659202	3300012361	Vadose Zone Soil	MPDKKDDKREMRMMWIASAGIALLILGAMGINMLVHHDTSAA
Ga0137361_101031921	3300012362	Vadose Zone Soil	MPDQNDDKREMRVMWIAAAAIALLILGAMGINMLVHHDTNAATPETSQSPAEPPK*
Ga0137361_109954062	3300012362	Vadose Zone Soil	MPDKNEDKREMRMMWIASAGIALLILGAMDINMLVHHDTSAATPETTQSPTESPK*
Ga0137398_111414781	3300012683	Vadose Zone Soil	MTDQNNDKSEMRMMWIASAAVVLVILAAMGINVLMHHDTNAATPETSQSAPK*
Ga0137395_101178501	3300012917	Vadose Zone Soil	MTDQNKPSEKSEMRAMWIATALIVLVLLGGMGINMLLHHDTSAATPESQSGTVLPK*
Ga0137395_101585944	3300012917	Vadose Zone Soil	MPDKKDDKREMRMMWIASAGIALLILGAMGINMLVHHDTSAATPETTQSPTESPK*
Ga0137413_110175342	3300012924	Vadose Zone Soil	MPDQNDDKREMRIMWIAAVAVVLLILGAMGINMLVHHETNAATPETSQSPAESPK*
Ga0137419_100957861	3300012925	Vadose Zone Soil	MTDQNNDKSEMRMMWIASAAVVLVILAAMGINVLVHHDTNAATPETTQSSPK*
Ga0137419_108101931	3300012925	Vadose Zone Soil	MPNQNDDKREMRIMWIAAAAVVLLILGAMGINMLVHHETNAATPETSRSLTEPPK*
Ga0137416_107596582	3300012927	Vadose Zone Soil	MPNQNDDKREMRIMWIAAAAVVLLILGAMGINMLVHHETNAATPETSQSPTESP
Ga0126375_102963021	3300012948	Tropical Forest Soil	PSGNYVAPKTKVRVMSNHNDESEMRVMWIASAVIVLLILGAMGINMLVHHETSAATPETSQSSAEPPK*
Ga0126375_111734882	3300012948	Tropical Forest Soil	SQFTPRAPSSMISPTHHNKVCAMADNDDDKHEMRIMWIASAGIALLILGAMGINMMIHHDTSAATTETIQSPTESPK*
Ga0126369_100818154	3300012971	Tropical Forest Soil	MPDQNDDQREMRIMWIASAAIALLILGAMGINMLVHHETSAAPAETTQSPTERPK*
Ga0126369_124134921	3300012971	Tropical Forest Soil	KVCAMPDQNDDKGEMRMMWIASAAVVLLILGAMGINLLVHHDSSAATPETSQTTAPK*
Ga0126369_135304652	3300012971	Tropical Forest Soil	MPGENDDKREMRMMWIFSVAVVLLILGAMGINMLVHHETNAATPETNRSLTESPK*
Ga0137418_101800511	3300015241	Vadose Zone Soil	MTDQNNDKSEMRMMWIASAAVVLVILAAMGINVLVHHDTNAATPET
Ga0137418_109677342	3300015241	Vadose Zone Soil	MTDQHNDKSEMRMMWIASAAVVLVIIAAMGINLLVHHDTNAATPETTQSSPK*
Ga0137418_113187322	3300015241	Vadose Zone Soil	MRMMWIASAGIALLILGAMGINMLVHHDTSAATPETTQSPTESPK*
Ga0137409_100958372	3300015245	Vadose Zone Soil	MPNQNDDKREMRIMWIAAVAVVLLILGAMGINMLVHHETNAATPETSRSLTEPPK*
Ga0137409_102873371	3300015245	Vadose Zone Soil	LRARHEIILCLSNDKSEMRMMWIASAAVVLVIIAAMGINLLVHHDTNAATPETSQSAPK*
Ga0187783_105185981	3300017970	Tropical Peatland	MTDPNEPNTEKSDMRIMWIATAVIVLGILGAMGINMLIHHDASTATPEMSGQSRAIPPK
Ga0179594_100665552	3300020170	Vadose Zone Soil	MPNQNDDKREMRIMWIAAAAVVLLILGAMGINMLVHHETNAATPETSRSLTEPPK
Ga0179596_101288421	3300021086	Vadose Zone Soil	MDQNDDKREMRMMWIFSAVVVVVILAGMGINLVVHHDTNAATPETSQSLPK
Ga0179596_101530493	3300021086	Vadose Zone Soil	MPDKNDDKREMRMMWIASAGIALLILGAMGINMLVHHDTSAATPETTQSPTESPK
Ga0210389_100911041	3300021404	Soil	MPDTNNDKSEMRMMWIASIGIALLILGAMGINVLVHHDTSAAAPVTSQ
Ga0187846_100421121	3300021476	Biofilm	MPDQNDDKREMRMMWIASAAIALLILGAMGINMLVHHDTSAATPETSQSPTEPSK
Ga0187846_101286262	3300021476	Biofilm	MPDQNDDKHEMRMMWIFSVAVVLLILAAMGINMLVHHDTSAATPETTQSPSERSK
Ga0187846_102127661	3300021476	Biofilm	MRAMPDQSDDKREMRMMWIFSAVVVLLILGAMGINMLVHHETNAATPETSRPFTEPPK
Ga0126371_102184991	3300021560	Tropical Forest Soil	MADDDNDKHEMRIMWIASAGIALLILGAMGINMLVHHDTSAATTETTQSPTEPPK
Ga0126371_105927382	3300021560	Tropical Forest Soil	MPNQNDDKNEMRVMWIASAAIALLILGAMGINMLVHHETGAATPDTSQSSAEPPK
Ga0126371_127639731	3300021560	Tropical Forest Soil	PDQNDDKSEMRIMWIASAVVALLILGAMGINMLIHHETSAATPETSQSPSDTPNPK
Ga0207663_117077271	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MTDPNDDKREMRMMWIATAVVVVVILAGTGINMLIHHDTNAATPE
Ga0207700_106520141	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTDQNDDKHEMRIMWIASAVIVLIILGAMGVNMLVHHDTSVAPETTQPLPK
Ga0209240_11135061	3300026304	Grasslands Soil	MTDQNDDKREMRMMWIATAVVVLVILGGMGINMLVHHDTNAATPETTQSLPK
Ga0209131_10639883	3300026320	Grasslands Soil	MTDQNDDKREMRMMWIATAVVVLVILGGMGINMLVH
Ga0257155_10315241	3300026481	Soil	MADQKDDKREMRIMWIASAVTVLVILGAMGINMLMHHDTNAATPETTQSPPK
Ga0209648_100057687	3300026551	Grasslands Soil	MTDQNDDKREMRMMWIATAVVVLVILGGMRINMLVHHDTNAATPETTQSLPK
Ga0179587_103060602	3300026557	Vadose Zone Soil	MTDQNNDKSEMRMMWIASAAVVLVILAAMGINLLVHHDTNAATPETSQSAPK
Ga0209179_10623702	3300027512	Vadose Zone Soil	MRAMPDQNDDKREMRIMWIAAVAVVLLILGAMGINMLVHHETNAATPETSQSPTESPK
Ga0209625_10086772	3300027635	Forest Soil	MADQNDDKREMRIMWIASAVTILVILGAMGINMLMHHDTNAATPETTQSPPK
Ga0209076_11133951	3300027643	Vadose Zone Soil	MTDQNNDKSEMRMMWIARAAVVLVILAAMGINLLVHHDTNAATPETTQSSPK
Ga0209799_10218343	3300027654	Tropical Forest Soil	MMSPTHHNKVCAMAENDDDKREMRIMWIASAGIALLILGAMGINMLVHHDTSAATTETTRSPTESPK
Ga0209388_10761791	3300027655	Vadose Zone Soil	MTDQNNDKSEMRMMWIASAAVVLVILAAMGINVLVHHDTNAATPETSQSAPK
Ga0209588_12543581	3300027671	Vadose Zone Soil	MRAMPNQNDDKREMRIMWIAAAAVVLLILGAMGINMLVHHETNAATPETSRSLTEPPK
Ga0209465_101528361	3300027874	Tropical Forest Soil	MPNQNDDKNEMRVMWIASAAIALLILGAMGINMLVHHETSAASPETSQSSTEPPK
Ga0209465_101594761	3300027874	Tropical Forest Soil	MPDQNDDKSEMRIMWIASAVVALLILGAMGINMLIHHETSAATPETSQSPSDTPNPK
Ga0209488_102946861	3300027903	Vadose Zone Soil	FPHPKTRVRTMPDQNDDKREMRVMWIAAAAIALLILGAMGINMLVHHDTNAATPETSQSPAEPPK
Ga0209006_110370032	3300027908	Forest Soil	MTDPNTEKSEMRIMWIASAVLVLILLGGMGINMLMHHDTNAATPETSTQSPPK
Ga0209526_101150723	3300028047	Forest Soil	MADQNDDKREMRVMWIASAVTVLVILGAMGINMLMHHDTNAATPETTQSPPK
Ga0137415_106930811	3300028536	Vadose Zone Soil	MTDQNNDKSEMRMMWIASAAVVLVILAAMGINLLVHHDTNAATPETTQSSPK
Ga0307476_103334973	3300031715	Hardwood Forest Soil	MRMMWIANVGIALLILGAMGINVLVHHDTSAAAPETTQSPRESPK
Ga0307469_100143215	3300031720	Hardwood Forest Soil	MSNHNDESEMRVMWIASAVIVLLILGAMGINMLVHHETSAATPETSQSPAEPPK
Ga0310916_105679511	3300031942	Soil	MPNQNDDKNEMRVMWIASAAIALLILGAMGINMLVHHETGAATPDTSQSSTEPPK
Ga0307471_1034189781	3300032180	Hardwood Forest Soil	MPDKNDDKREMRMMWIASAGIALLILGAMGINMLVHHDTSAATPETTRSPTESPK
Ga0307472_1010739681	3300032205	Hardwood Forest Soil	MTDQHDDKREMRMMWIASVAVVLVILAGMGINMLVHHDTSAATPETTQSPPK
Ga0306920_1023335822	3300032261	Soil	MPNQNDDKNEMRVMWIASAAIALLILGAMGINKLVHHETSAATPETSQSSTEPPK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078279

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences