Metagenome / Metatranscriptome Family F078276

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078276
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	62 residues
Representative Sequence	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLV
Number of Associated Samples	103
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.66 %
% of genes near scaffold ends (potentially truncated)	56.90 %
% of genes from short scaffolds (< 2000 bps)	82.76 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.414 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.690 % of family members)
Environment Ontology (ENVO)	Unclassified (29.310 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (29.310 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.36% β-sheet: 0.00% Coil/Unstructured: 38.64%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13546	DDE_5	1.72
PF13613	HTH_Tnp_4	0.86
PF01609	DDE_Tnp_1	0.86
PF02577	BFN_dom	0.86
PF00211	Guanylate_cyc	0.86
PF13358	DDE_3	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1259	Bifunctional DNase/RNase	General function prediction only [R]	0.86
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.86
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.86
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.86
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.86
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.86
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.86
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.41 %
Unclassified	root	N/A	2.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.41 %
Unclassified	root	N/A	2.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.41 %
Unclassified	root	N/A	2.59 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	81.90 %
Unclassified	root	N/A	2.59 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.59 %
Unclassified	root	N/A	2.59 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.86 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.86 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.59 %
Unclassified	root	N/A	2.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.86 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.86 %

Name	Rank	Taxonomy	Distribution
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	2.59 %
Unclassified	root	N/A	2.59 %
Herpetosiphonales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	2.59 %
Unclassified	root	N/A	2.59 %
Herpetosiphonaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Desulfobacula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacula	2.59 %
Unclassified	root	N/A	2.59 %
unclassified Herpetosiphonaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → unclassified Herpetosiphonaceae	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Desulfobacula toluolica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacula → Desulfobacula toluolica	2.59 %
Unclassified	root	N/A	2.59 %
Herpetosiphonaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → unclassified Herpetosiphonaceae → Herpetosiphonaceae bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16858117	All Organisms → cellular organisms → Bacteria → Proteobacteria	1198	Open in IMG/M
3300000571\|JGI1358J11329_10046509	All Organisms → cellular organisms → Bacteria	1802	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1003462	All Organisms → cellular organisms → Bacteria → Proteobacteria	1843	Open in IMG/M
3300000709\|KanNP_Total_F14TBDRAFT_1000823	All Organisms → cellular organisms → Bacteria → Proteobacteria	1862	Open in IMG/M
3300000754\|JGI11851J11668_1000153	All Organisms → cellular organisms → Bacteria → Proteobacteria	1906	Open in IMG/M
3300000890\|JGI11643J12802_10597062	All Organisms → cellular organisms → Bacteria → Proteobacteria	1459	Open in IMG/M
3300002899\|JGIcombinedJ43975_10045390	All Organisms → cellular organisms → Bacteria → Proteobacteria	735	Open in IMG/M
3300002899\|JGIcombinedJ43975_10047811	All Organisms → cellular organisms → Bacteria → Proteobacteria	718	Open in IMG/M
3300003987\|Ga0055471_10194130	All Organisms → cellular organisms → Bacteria → Proteobacteria	632	Open in IMG/M
3300004153\|Ga0063455_101014026	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300005168\|Ga0066809_10241332	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M
3300005289\|Ga0065704_10008427	All Organisms → cellular organisms → Bacteria	2514	Open in IMG/M
3300005447\|Ga0066689_10413552	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300005843\|Ga0068860_102802721	All Organisms → cellular organisms → Bacteria → Proteobacteria	505	Open in IMG/M
3300006034\|Ga0066656_10493234	All Organisms → cellular organisms → Bacteria → Proteobacteria	799	Open in IMG/M
3300007255\|Ga0099791_10053447	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacula → Desulfobacula toluolica	1812	Open in IMG/M
3300009012\|Ga0066710_100185273	All Organisms → cellular organisms → Bacteria	2945	Open in IMG/M
3300009012\|Ga0066710_102510983	All Organisms → cellular organisms → Bacteria → Proteobacteria	745	Open in IMG/M
3300009038\|Ga0099829_10239341	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300009038\|Ga0099829_10637116	All Organisms → cellular organisms → Bacteria → Proteobacteria	886	Open in IMG/M
3300009038\|Ga0099829_10972852	Not Available	704	Open in IMG/M
3300009090\|Ga0099827_10970563	All Organisms → cellular organisms → Bacteria → Proteobacteria	737	Open in IMG/M
3300009090\|Ga0099827_11657886	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300009789\|Ga0126307_10885882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → unclassified Herpetosiphonaceae → Herpetosiphonaceae bacterium	721	Open in IMG/M
3300009808\|Ga0105071_1032013	All Organisms → cellular organisms → Bacteria → Proteobacteria	796	Open in IMG/M
3300009808\|Ga0105071_1081468	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300009813\|Ga0105057_1002504	All Organisms → cellular organisms → Bacteria → Proteobacteria	2237	Open in IMG/M
3300009821\|Ga0105064_1101174	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300009836\|Ga0105068_1041167	All Organisms → cellular organisms → Bacteria → Proteobacteria	823	Open in IMG/M
3300009836\|Ga0105068_1080387	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300010862\|Ga0126348_1229681	All Organisms → cellular organisms → Bacteria → Proteobacteria	711	Open in IMG/M
3300012096\|Ga0137389_10512775	All Organisms → cellular organisms → Bacteria → Proteobacteria	1029	Open in IMG/M
3300012096\|Ga0137389_11050750	All Organisms → cellular organisms → Bacteria → Proteobacteria	698	Open in IMG/M
3300012189\|Ga0137388_11278947	All Organisms → cellular organisms → Bacteria → Proteobacteria	672	Open in IMG/M
3300012207\|Ga0137381_10599871	All Organisms → cellular organisms → Bacteria → Proteobacteria	959	Open in IMG/M
3300012210\|Ga0137378_10652422	All Organisms → cellular organisms → Bacteria → Proteobacteria	963	Open in IMG/M
3300012359\|Ga0137385_10371395	All Organisms → cellular organisms → Bacteria → Proteobacteria	1222	Open in IMG/M
3300012363\|Ga0137390_10116707	All Organisms → cellular organisms → Bacteria	2643	Open in IMG/M
3300012363\|Ga0137390_10146256	All Organisms → cellular organisms → Bacteria → Proteobacteria	2346	Open in IMG/M
3300012363\|Ga0137390_10641636	All Organisms → cellular organisms → Bacteria → Proteobacteria	1027	Open in IMG/M
3300012922\|Ga0137394_10960056	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	711	Open in IMG/M
3300012925\|Ga0137419_11736355	All Organisms → cellular organisms → Bacteria → Proteobacteria	533	Open in IMG/M
3300012951\|Ga0164300_10435682	All Organisms → cellular organisms → Bacteria → Proteobacteria	731	Open in IMG/M
3300016270\|Ga0182036_10142226	All Organisms → cellular organisms → Bacteria → Proteobacteria	1697	Open in IMG/M
3300016294\|Ga0182041_10152395	All Organisms → cellular organisms → Bacteria	1786	Open in IMG/M
3300016319\|Ga0182033_11993448	All Organisms → cellular organisms → Bacteria → Proteobacteria	529	Open in IMG/M
3300016341\|Ga0182035_10017485	All Organisms → cellular organisms → Bacteria → Proteobacteria	4371	Open in IMG/M
3300016357\|Ga0182032_10202869	All Organisms → cellular organisms → Bacteria → Proteobacteria	1511	Open in IMG/M
3300016387\|Ga0182040_10128496	All Organisms → cellular organisms → Bacteria → Proteobacteria	1771	Open in IMG/M
3300017792\|Ga0163161_10118783	All Organisms → cellular organisms → Bacteria → Proteobacteria	1985	Open in IMG/M
3300017997\|Ga0184610_1011550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2228	Open in IMG/M
3300018031\|Ga0184634_10360794	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300018053\|Ga0184626_10016522	All Organisms → cellular organisms → Bacteria	2957	Open in IMG/M
3300018056\|Ga0184623_10019356	All Organisms → cellular organisms → Bacteria	3006	Open in IMG/M
3300018056\|Ga0184623_10132378	Not Available	1153	Open in IMG/M
3300018074\|Ga0184640_10004604	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacula → Desulfobacula toluolica	4553	Open in IMG/M
3300018076\|Ga0184609_10039130	All Organisms → cellular organisms → Bacteria → Proteobacteria	1985	Open in IMG/M
3300018078\|Ga0184612_10029485	All Organisms → cellular organisms → Bacteria	2834	Open in IMG/M
3300018082\|Ga0184639_10665976	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300018433\|Ga0066667_10588716	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300020067\|Ga0180109_1283950	All Organisms → cellular organisms → Bacteria → Proteobacteria	588	Open in IMG/M
3300021476\|Ga0187846_10034498	All Organisms → cellular organisms → Bacteria → Proteobacteria	2281	Open in IMG/M
3300022563\|Ga0212128_10048324	All Organisms → cellular organisms → Bacteria → Proteobacteria	2742	Open in IMG/M
3300025149\|Ga0209827_11031265	All Organisms → cellular organisms → Bacteria → Proteobacteria	1191	Open in IMG/M
3300025791\|Ga0210115_1030333	All Organisms → cellular organisms → Bacteria → Proteobacteria	1196	Open in IMG/M
3300025961\|Ga0207712_10959210	All Organisms → cellular organisms → Bacteria → Proteobacteria	758	Open in IMG/M
3300026044\|Ga0208287_1011899	All Organisms → cellular organisms → Bacteria → Proteobacteria	787	Open in IMG/M
3300026320\|Ga0209131_1087594	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacula → Desulfobacula toluolica	1666	Open in IMG/M
3300026354\|Ga0257180_1024225	All Organisms → cellular organisms → Bacteria → Proteobacteria	802	Open in IMG/M
3300026542\|Ga0209805_1339978	All Organisms → cellular organisms → Bacteria → Proteobacteria	570	Open in IMG/M
3300027013\|Ga0209884_1007812	All Organisms → cellular organisms → Bacteria → Proteobacteria	984	Open in IMG/M
3300027068\|Ga0209898_1012145	All Organisms → cellular organisms → Bacteria → Proteobacteria	1043	Open in IMG/M
3300027273\|Ga0209886_1003897	All Organisms → cellular organisms → Bacteria → Proteobacteria	2044	Open in IMG/M
3300027324\|Ga0209845_1007274	All Organisms → cellular organisms → Bacteria → Proteobacteria	1890	Open in IMG/M
3300027533\|Ga0208185_1011021	All Organisms → cellular organisms → Bacteria → Proteobacteria	2263	Open in IMG/M
3300027846\|Ga0209180_10129657	All Organisms → cellular organisms → Bacteria → Proteobacteria	1448	Open in IMG/M
3300027846\|Ga0209180_10237923	All Organisms → cellular organisms → Bacteria → Proteobacteria	1049	Open in IMG/M
3300027862\|Ga0209701_10212481	All Organisms → cellular organisms → Bacteria → Proteobacteria	1148	Open in IMG/M
3300028597\|Ga0247820_10717872	All Organisms → cellular organisms → Bacteria → Proteobacteria	698	Open in IMG/M
3300028792\|Ga0307504_10098243	All Organisms → cellular organisms → Bacteria → Proteobacteria	928	Open in IMG/M
3300028889\|Ga0247827_10256560	All Organisms → cellular organisms → Bacteria → Proteobacteria	998	Open in IMG/M
3300030989\|Ga0308196_1065075	Not Available	530	Open in IMG/M
3300031543\|Ga0318516_10527577	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300031546\|Ga0318538_10360399	All Organisms → cellular organisms → Bacteria → Proteobacteria	785	Open in IMG/M
3300031562\|Ga0310886_10622137	All Organisms → cellular organisms → Bacteria → Proteobacteria	665	Open in IMG/M
3300031564\|Ga0318573_10084513	All Organisms → cellular organisms → Bacteria → Proteobacteria	1608	Open in IMG/M
3300031564\|Ga0318573_10466528	All Organisms → cellular organisms → Bacteria → Proteobacteria	679	Open in IMG/M
3300031573\|Ga0310915_10276900	All Organisms → cellular organisms → Bacteria → Proteobacteria	1183	Open in IMG/M
3300031640\|Ga0318555_10090917	All Organisms → cellular organisms → Bacteria → Proteobacteria	1600	Open in IMG/M
3300031713\|Ga0318496_10535389	All Organisms → cellular organisms → Bacteria → Proteobacteria	647	Open in IMG/M
3300031719\|Ga0306917_10971624	All Organisms → cellular organisms → Bacteria → Proteobacteria	663	Open in IMG/M
3300031723\|Ga0318493_10367170	All Organisms → cellular organisms → Bacteria → Proteobacteria	784	Open in IMG/M
3300031724\|Ga0318500_10046873	All Organisms → cellular organisms → Bacteria → Proteobacteria	1818	Open in IMG/M
3300031736\|Ga0318501_10115390	All Organisms → cellular organisms → Bacteria → Proteobacteria	1354	Open in IMG/M
3300031744\|Ga0306918_10690961	All Organisms → cellular organisms → Bacteria → Proteobacteria	798	Open in IMG/M
3300031748\|Ga0318492_10180778	All Organisms → cellular organisms → Bacteria → Proteobacteria	1073	Open in IMG/M
3300031751\|Ga0318494_10262033	All Organisms → cellular organisms → Bacteria → Proteobacteria	993	Open in IMG/M
3300031770\|Ga0318521_10059172	All Organisms → cellular organisms → Bacteria	2006	Open in IMG/M
3300031777\|Ga0318543_10080723	All Organisms → cellular organisms → Bacteria → Proteobacteria	1377	Open in IMG/M
3300031890\|Ga0306925_10300839	All Organisms → cellular organisms → Bacteria → Proteobacteria	1725	Open in IMG/M
3300031893\|Ga0318536_10239804	All Organisms → cellular organisms → Bacteria → Proteobacteria	922	Open in IMG/M
3300031896\|Ga0318551_10183918	All Organisms → cellular organisms → Bacteria → Proteobacteria	1151	Open in IMG/M
3300031942\|Ga0310916_10539810	All Organisms → cellular organisms → Bacteria → Proteobacteria	992	Open in IMG/M
3300031945\|Ga0310913_10064234	All Organisms → cellular organisms → Bacteria → Proteobacteria	2421	Open in IMG/M
3300031981\|Ga0318531_10026748	All Organisms → cellular organisms → Bacteria → Proteobacteria	2343	Open in IMG/M
3300032041\|Ga0318549_10068567	All Organisms → cellular organisms → Bacteria → Proteobacteria	1501	Open in IMG/M
3300032042\|Ga0318545_10089622	All Organisms → cellular organisms → Bacteria → Proteobacteria	1071	Open in IMG/M
3300032065\|Ga0318513_10066706	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M
3300032068\|Ga0318553_10216653	All Organisms → cellular organisms → Bacteria → Proteobacteria	999	Open in IMG/M
3300032076\|Ga0306924_10184912	All Organisms → cellular organisms → Bacteria	2391	Open in IMG/M
3300032180\|Ga0307471_103281508	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300032261\|Ga0306920_101220495	All Organisms → cellular organisms → Bacteria → Proteobacteria	1085	Open in IMG/M
3300033550\|Ga0247829_11120144	All Organisms → cellular organisms → Bacteria → Proteobacteria	653	Open in IMG/M
3300033551\|Ga0247830_11241121	All Organisms → cellular organisms → Bacteria → Proteobacteria	595	Open in IMG/M
3300034147\|Ga0364925_0009106	All Organisms → cellular organisms → Bacteria	2977	Open in IMG/M
3300034151\|Ga0364935_0039679	All Organisms → cellular organisms → Bacteria → Proteobacteria	1347	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.55%
Host-Associated	Host-Associated	3.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.76%
Aquatic	Environmental → Aquatic	13.79%
Plants	Host-Associated → Plants	3.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.17%
Sediment	Environmental → Aquatic → Sediment	8.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.59%
Freshwater	Environmental → Aquatic → Freshwater	1.72%
Marine	Environmental → Aquatic → Marine	1.72%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.72%
Floodplain	Environmental → Terrestrial → Floodplain	1.72%
Cave	Environmental → Terrestrial → Cave	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.62%
Sand	Environmental → Terrestrial → Soil → Sand	8.62%
Loam	Environmental → Terrestrial → Soil → Loam	3.45%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.72%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.86%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.03%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.62%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	8.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.76%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.31%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.45%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	1.72%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.48%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	8.62%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.59%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.72%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	1.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.72%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.86%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.86%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.86%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000571	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000709	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA F1.4 TB amended with BrdU and acetate no abondance	Environmental	Open in IMG/M
3300000754	Amended soil microbial communities from Kansas Great Prairies, USA - acetate Total DNA F2.4TB	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009808	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50	Environmental	Open in IMG/M
3300009813	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20	Environmental	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300010862	Boreal forest soil eukaryotic communities from Alaska, USA - C4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300025149	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2 (SPAdes)	Environmental	Open in IMG/M
3300025791	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026044	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027013	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027068	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027273	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027324	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030989	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03305150	2088090014	Soil	MAARGKAVRSAVSSGRHAITKGMRQTRSIGQDIEWWWKVNAVHIPGTKNALYRAFLDSLS
JGI1358J11329_100465091	3300000571	Groundwater	MAALGKAVRSAVRSGRHETTKGMRKTRSIGQDIAWWWKVNEVQIPGTKNALYRAFLDSLV
KanNP_Total_noBrdU_T14TCDRAFT_10034621	3300000596	Soil	MTARGKAVSSAVSSGRHEITKGMRKTRSIGQDIEWWWKVSEVHIPDTKNALYRAFLDSLA
KanNP_Total_F14TBDRAFT_10008232	3300000709	Soil	MTARGKAVSSAVSSGRHEITKGMRKTRSIGQDIEWWWKVSEVHIPDTKNALYRAFLDS
JGI11851J11668_10001532	3300000754	Soil	MTARGKAVSSAVSSGRHEITKGMRKTRSIGQDIEWWWKVSEVHIPDTKNALYRAFLDSLTSDKPSGRVRLS
JGI11643J12802_105970622	3300000890	Soil	MAARGKAVSSAVSSGRHEITKGMRKTRSIGQDIEWWWKVSAVHIPDTKNALYRAFLDSL
JGIcombinedJ43975_100453901	3300002899	Soil	MTARGKAVSSAVSSGRHEITKGMRKTRSIGQDIEWWWKVSEVHIPDTKNALYRAFLDSLNLYSLWAQESSTESLSM
JGIcombinedJ43975_100478112	3300002899	Soil	MXARGKAVSSAVSSGRHEITKGMRKTRSIGQDIEWWWKVSEVHIPDTKNALYRAFLDSLSLICPMYSA
Ga0055471_101941301	3300003987	Natural And Restored Wetlands	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQNIERWWKVNEVQIPGTKDALYRAFLDSL
Ga0063455_1010140261	3300004153	Soil	MRTSMAARGKAAASAVSSGRHEITKGTQQTRSIGQDIERWKVNEVHIPDTKNALYRAFLDSLPPGNAS
Ga0066809_102413321	3300005168	Soil	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQNIERWWKVHEVQIPDTKNVL
Ga0065704_100084272	3300005289	Switchgrass Rhizosphere	MAARGTAVRSAVSSGRHEITKGMRKTRAIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLMFTQ*
Ga0066689_104135522	3300005447	Soil	MAARGKAVRSAVSSGRHEITKGMRKTRSIGPDIEWWWKVTEVQIPGTKNALYRAFLDSLP
Ga0068860_1028027212	3300005843	Switchgrass Rhizosphere	MAARGTAVRSAVSSGRHEITKGMRKTRAIGQDIEWWWKVNEVQISGTKNALYRAFLDSLGQWIHC*
Ga0066656_104932342	3300006034	Soil	MAARGKAVRSAVSAGRHEMTKGMRKTRSIGQDIERWWKVNEVQIPGTKDALYRAFLDSL
Ga0099791_100534471	3300007255	Vadose Zone Soil	MAARGKAVRSAVSSGRHEMTKGMRKTRLIGQNIEQWWQVNEVQIPGTKNAL*
Ga0066710_1001852732	3300009012	Grasslands Soil	MAARGKAVRSAVSAGRHEMTKGMRKTRSIGQDIERWWKVNEVQIPGTKDALYRAFLDSLCQRNEHL
Ga0066710_1025109831	3300009012	Grasslands Soil	MKINMAARGKAVRSAVSSGRHEITKDMRKTRSIGQDIERWWQVNEVQIPGTKNAL
Ga0099829_102393413	3300009038	Vadose Zone Soil	MAALGKAVRSAVRSGRHETTKGMRKTRSIGQDIAWWWKVNEVQIPGTKNAL
Ga0099829_106371163	3300009038	Vadose Zone Soil	MAARGKAVSSAVSSGRHEMTKGRRNTRSIGQNIERCWKVNEGQIPGTKNAL*
Ga0099829_109728523	3300009038	Vadose Zone Soil	MAARGKAVRRAVSSGRHAMTKGRRKTRSIGQDIAWWWKVNEVQIPGTKNAL
Ga0099827_109705633	3300009090	Vadose Zone Soil	MAARGKAVSSAVSSGRHEITKGLRKTRSIGQDIEWWWKVNEVQIPGTKNALYR
Ga0099827_116578861	3300009090	Vadose Zone Soil	MAARGKVVRSAVRSGRHEITKGMRKTRSIGQDIERWWKVNEVQIPGTKDALYR
Ga0126307_108858821	3300009789	Serpentine Soil	MRISTTALGRVVSSAVSFGRHEITKGTRKTRSIGPNIERWWKGNEVEIPGTKNARQKAFLDALAQG*
Ga0105071_10320132	3300009808	Groundwater Sand	MAALGRAVRSAVRSGRHEITKGMRKTPSIGPDIERWWKVTEVQIPGTKNALYRAFLDSLVQIVPNGEFLVGRNNEVLC*
Ga0105071_10814683	3300009808	Groundwater Sand	MAARGKAVSSAVSSGHHEITKGMRKTRSIGQDIERWWKVNEVQIPGTKDALYRAFLDSLNFF
Ga0105057_10025042	3300009813	Groundwater Sand	MAALGKAVRSAVSSGRHEMTKDMRKTRSIGQDIERWWQVNEVQIPGTKNAL*
Ga0105064_11011741	3300009821	Groundwater Sand	MRISMAALGRAVRSAVSSGRHEITQGMRKTPSIGPDIERWWKVTEVQIPGTKNALYRAF
Ga0105068_10411671	3300009836	Groundwater Sand	MAARGKAVRSAVGSGHHEITKGMRKTRSIGQDIEQWWKVNEVQIPGTKDARYRAFLDSLN
Ga0105068_10803871	3300009836	Groundwater Sand	MAALGKAVRSAVSSGRHEMTKGMRKTRSIGQNIERWWKVNEVQIPGTKNAL*
Ga0126348_12296811	3300010862	Boreal Forest Soil	MRISMAALGKAVRSAVSSGRHEITKGMRKTRAIGQDIEWWWKVNEVQIPGTKNAL*
Ga0137389_105127751	3300012096	Vadose Zone Soil	MAALGKAVRSAVSSGRHETTKGMRKTRSIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLVMDSTT
Ga0137389_110507502	3300012096	Vadose Zone Soil	MVARGTAVRSVVSSGRHEIIKGMRTTRSIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLVMDSTT
Ga0137388_112789472	3300012189	Vadose Zone Soil	MAALGKAVRSAVSSGRHEMTKGMRKTRSIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLMLLVVTDSVDGLKWG*
Ga0137381_105998712	3300012207	Vadose Zone Soil	MAALGKAVRSAVRSGHHEMTKGMRKTRSIGQDIEWWWKANAVQILGTKNALY
Ga0137378_106524221	3300012210	Vadose Zone Soil	MAARGKAVRSAVSSGRHEMTKGMRKTRSIGQDIEWWWKGNAVQIPGTKNALYRAFLDSLALLSIGSTSGQSIQSIC
Ga0137385_103713953	3300012359	Vadose Zone Soil	MAARGKAVRSAVSSGRHEMTKGMRKTRSIGQDIEWWWKGNAVQIPGTKNALYRAFLDSLALGCRKF*
Ga0137390_101167071	3300012363	Vadose Zone Soil	MAARGKAVSSAVSSGRHEMTKGMRKTRSIGQNIERCWKVNEGQIPGTKNAL*
Ga0137390_101462561	3300012363	Vadose Zone Soil	MAALGKAVRSAVSSGRHETTKGMRKTRSIGQDIEWWWKVNEVQIPGTKNALYRAFLDSL
Ga0137390_106416362	3300012363	Vadose Zone Soil	MVARGIAVRSAVSSGRHEMIKDRRKTRSIGQDIEWWWKVNEVQIPGTKNALYRAFL
Ga0137394_109600562	3300012922	Vadose Zone Soil	KISMAARGKAVRSAVSSGRHEMTKGMRKTRLIGQNIEQWWQVNEVQIPGTKNAL*
Ga0137419_117363551	3300012925	Vadose Zone Soil	MVARGIAVRSAVSSGRHEIIKDMRKTRSIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLCLASATSAQTEWI
Ga0164300_104356821	3300012951	Soil	MAARGTAVRSAVSSGRHEITKGMRKTRAIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLVLTPGLDDSPLCKITAY*
Ga0182036_101422262	3300016270	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLGACPRIIF
Ga0182041_101523952	3300016294	Soil	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLGLSIVCNAVM
Ga0182033_119934482	3300016319	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLLFNRRLIVDLLA
Ga0182035_100174854	3300016341	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLPVERPVGRLCRMICSRQ
Ga0182032_102028692	3300016357	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLIKKLPNDLASHS
Ga0182040_101284962	3300016387	Soil	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLASGPSGPPLAYSPFQGALGAAV
Ga0163161_101187831	3300017792	Switchgrass Rhizosphere	MAARGTAVRSAVSSGRHEITKGMRKTRAIGQDIEWWWKVNEVQIPGTKNALYRAFLDVTVQIVKT
Ga0184610_10115502	3300017997	Groundwater Sediment	MMRTSMAARGKAVRSAVSSGRHEMTKGMRKTRSIGQDIEQWWKVNEVQIPGTKDALYRAFLDSLGENR
Ga0184634_103607941	3300018031	Groundwater Sediment	MAARGNAVRSAVSAGRHEMTKGRRKTRSIGQDIAQCWKVNEVQIPGTKIALYRAFLDSLTLDKQSKGITIDE
Ga0184626_100165222	3300018053	Groundwater Sediment	MAARGKAVRSAVSSGRHEMTKGMRKTRSIGQDIAQWWKVNEVQIPGTKDALYRAFLDSLFQSHHQG
Ga0184623_100193566	3300018056	Groundwater Sediment	MAALGKAVRSAVSAGRHEMTKGRRKTRSIGQDIERWWKVNEVQIPGTKNAL
Ga0184623_101323781	3300018056	Groundwater Sediment	SMAARGKAVRSAVSSGRHEMTKGMRKTRSIGQDIAQWWKVNEVQIPGTKDALYRAFLDSLAQSQDQP
Ga0184640_100046044	3300018074	Groundwater Sediment	MVARGTAVRSVVSSGRHEIIKGMRTTRSIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLV
Ga0184609_100391301	3300018076	Groundwater Sediment	MAALGKAVRSAVSSGRHEITKGMQQTRSIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLA
Ga0184612_100294852	3300018078	Groundwater Sediment	MAARGKAVRSAVSSGRHEMTKGMRKTRSIGQDIAQWWKVNEVQIPGTKDALYRAFLDTLPLREPLLG
Ga0184639_106659761	3300018082	Groundwater Sediment	MKISMAALGKAVRSAVSAGRHEMTKGRRKTRSIGQDIAQWWKVNEVQIPGTKDALYRAFLDSLGSKVHNTLLLSQ
Ga0066667_105887161	3300018433	Grasslands Soil	MAARGKAVRSAVSSGRHEITKGMRKTRSIGPDIEWWWKVTEVQIPGTKNALYRAFLDSLDLASRSIWALDCGKKDRRLC
Ga0180109_12839501	3300020067	Groundwater Sediment	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQDIEWWLKVNEVQIPGTKNALYRAFLDSLALLQYQKRYSFVSEDSL
Ga0187846_100344981	3300021476	Biofilm	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQDIERWGKVNEVQILGTKDALYRAFLDSLP
Ga0212128_100483242	3300022563	Thermal Springs	MVALSKAVRSAVSSGRHEITKGLRKTRSIGQDIEWWWKVNEVQILGTKNALYKAFLDSLV
Ga0209827_110312651	3300025149	Thermal Springs	MVALSKAVRSAVSSGRHEITKGLRKTRSIGQDIEWWWKVNEVQILGTKNALYKAFLDSLG
Ga0210115_10303331	3300025791	Natural And Restored Wetlands	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQNIERWWKVNEVQIPGTKDALYRAFLDSLW
Ga0207712_109592101	3300025961	Switchgrass Rhizosphere	MAARGTAVRSAVSSGRHEITKGMRKTRAIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLGDALLLQGLFLL
Ga0208287_10118991	3300026044	Natural And Restored Wetlands	MAALGRAVRSAVNSGRHAITKGMRKTQSIGQDIERWWEVNEVQIPGTKNVL
Ga0209131_10875944	3300026320	Grasslands Soil	MAARGKAVRSAVSSGRHEMTKGMRKTRLIGQNIEQWWQVNEVQIPGTKNAL
Ga0257180_10242251	3300026354	Soil	MVARGIAVRSAVSSGRHEIIKDMRKTRSIGQDIEWWWKVNEVQIPGTKNALYRGMA
Ga0209805_13399781	3300026542	Soil	MKISMAARGKAVRSAVSSGRHEITKGMRKTRSIGQDIERWWKVNEVQIPGSKNAL
Ga0209884_10078121	3300027013	Groundwater Sand	MAALGKAVRSAVSSGRHETTKGMRKTRSIGQDIEWWWKVNEVQIPGTKNALYR
Ga0209898_10121452	3300027068	Groundwater Sand	MAALGRAVRSAVRSGRHEITKGMRKTPSIGPDIERWWKVTEVQIPGTKNALYRAFLDSLVEK
Ga0209886_10038972	3300027273	Groundwater Sand	MAALGRAVRSAVRSGRHEITKGMRKTPSIGPDIERWWKVTEVQIPGTKNALYRAFLDSLQ
Ga0209845_10072742	3300027324	Groundwater Sand	MAALGRAVRSAVRSGRHEMTKGMRKTRSIGQDIERWWKVNEVHIPGSKNAL
Ga0208185_10110211	3300027533	Soil	MAARGTAVSSAVSSGRHEITKGMRKTRSIGQDIEWWGKVNEVQIPGTKNALYRAFLDSLI
Ga0209180_101296572	3300027846	Vadose Zone Soil	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLV
Ga0209180_102379232	3300027846	Vadose Zone Soil	MKINMAALGKAVRSAVSSGRHEITKDMRKTRSIGQDIERWWQVNEVQIPGTKNALYRAFLDSLAVLT
Ga0209701_102124812	3300027862	Vadose Zone Soil	MVARGTAVRSVVSSGRHEIIKGMRTTRSIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLFKPRVSKSAFVR
Ga0247820_107178722	3300028597	Soil	MAARGTAVRSVVSSGRREITKGMRKTRAIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLCEDLTLAST
Ga0307504_100982431	3300028792	Soil	MVARGIAVRSAVSSGRHEIIKDMRKTRSIGQDIAWWWKVNEVQIPGTKNALYRAFLDSLIVTSGCLFPQKQQSCNR
Ga0247827_102565601	3300028889	Soil	MAARGTAVRSAVSSGRHEITKGMRKTRAIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLT
Ga0308196_10650751	3300030989	Soil	SMAALGKAVRSAVRSGRPEMTKGMRKTRSIGQNIERWWKVNEVQIPGTKNAL
Ga0318516_105275772	3300031543	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLF
Ga0318538_103603991	3300031546	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLLFNRRLI
Ga0310886_106221371	3300031562	Soil	MAALGKAVRSAVSSGRYEITKGMRKTRSIGQDIEWWWTVNEVQIPGTKNALYRAFLDSLG
Ga0318573_100845131	3300031564	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLNQNEV
Ga0318573_104665282	3300031564	Soil	MKISMAAHGKAVKSAVSSGRHEITKGMRKTRSIGQDIERWWKVNEVQIPGTQDA
Ga0310915_102769001	3300031573	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLHATYSIV
Ga0318555_100909171	3300031640	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLNQNE
Ga0318496_105353891	3300031713	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLP
Ga0306917_109716242	3300031719	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLN
Ga0318493_103671702	3300031723	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLA
Ga0318500_100468731	3300031724	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLG
Ga0318501_101153902	3300031736	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLGFLARHDN
Ga0306918_106909612	3300031744	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLFHRL
Ga0318492_101807781	3300031748	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSL
Ga0318494_102620332	3300031751	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLHATYS
Ga0318521_100591722	3300031770	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLRNG
Ga0318543_100807232	3300031777	Soil	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLDFCTP
Ga0306925_103008391	3300031890	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLI
Ga0318536_102398041	3300031893	Soil	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLAPYHQWAWLRPH
Ga0318551_101839182	3300031896	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLD
Ga0310916_105398101	3300031942	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLNYTDF
Ga0310913_100642342	3300031945	Soil	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLKLPWRR
Ga0318531_100267481	3300031981	Soil	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSL
Ga0318549_100685672	3300032041	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLGLLQA
Ga0318545_100896221	3300032042	Soil	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALY
Ga0318513_100667062	3300032065	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLHATYSIVPESYMRHYRR
Ga0318553_102166532	3300032068	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLQVP
Ga0306924_101849121	3300032076	Soil	MAARGKAVRSAVSSGRHEITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLV
Ga0307471_1032815082	3300032180	Hardwood Forest Soil	MAARGKAVSSAVSSGRHEMTKGMRKTRSIGQDIEWWWKVNAVQIPGTKNALYRAFLDSPA
Ga0306920_1012204952	3300032261	Soil	MAARGKAVRSAVSSGRHAITKGMRKTRSIGQDIERWWKVNEVQIPGTQDALYRAFLDSLSFH
Ga0247829_111201441	3300033550	Soil	MAARGTAVRSAVSSGRHEITKGMRKTRAIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLVLTPGLDD
Ga0247830_112411211	3300033551	Soil	MAARGTAVRSAVSSGRHEITKGMRKTRAIGQDIEWWWKVNEVQIPGTKNALYRAFLDSLVLTPGLDDSPLCKITAY
Ga0364925_0009106_2733_2888	3300034147	Sediment	MAALGNVVRSAVSSGRHEITKGMRKTRSIGQNIERWWKVHEVQIPGTKNTL
Ga0364935_0039679_3_176	3300034151	Sediment	MAALGNVVRSAVSSGRHEITKGMRKTRSIGQDIERWWKVNEVQIPGTKDALYRAFLDS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078276

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences