Metagenome Family F077956

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077956
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	58 residues
Representative Sequence	MSDKVDGKTASPYGYPFWDWMAKEDPEYVRARGPLSALSVGEGKELSIKHREMVII
Number of Associated Samples	102
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	94.87 %
% of genes from short scaffolds (< 2000 bps)	82.91 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.761 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (18.803 % of family members)
Environment Ontology (ENVO)	Unclassified (29.915 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.880 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.67% β-sheet: 0.00% Coil/Unstructured: 58.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF07045	DUF1330	7.69
PF00106	adh_short	6.84
PF03092	BT1	5.13
PF00676	E1_dh	3.42
PF05050	Methyltransf_21	2.56
PF12847	Methyltransf_18	1.71
PF00072	Response_reg	1.71
PF00496	SBP_bac_5	1.71
PF13379	NMT1_2	1.71
PF00903	Glyoxalase	1.71
PF00005	ABC_tran	1.71
PF10543	ORF6N	0.85
PF13561	adh_short_C2	0.85
PF14833	NAD_binding_11	0.85
PF00127	Copper-bind	0.85
PF02775	TPP_enzyme_C	0.85
PF00578	AhpC-TSA	0.85
PF02826	2-Hacid_dh_C	0.85
PF01471	PG_binding_1	0.85
PF00296	Bac_luciferase	0.85
PF02475	Met_10	0.85
PF04952	AstE_AspA	0.85
PF12697	Abhydrolase_6	0.85
PF02353	CMAS	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	7.69
COG0567	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes	Energy production and conversion [C]	3.42
COG1071	TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha	Energy production and conversion [C]	3.42
COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	Translation, ribosomal structure and biogenesis [J]	0.85
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.85
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.85
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.85
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	0.85
COG2264	Ribosomal protein L11 methylase PrmA	Translation, ribosomal structure and biogenesis [J]	0.85
COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	Translation, ribosomal structure and biogenesis [J]	0.85
COG2520	tRNA G37 N-methylase Trm5	Translation, ribosomal structure and biogenesis [J]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.76 %
Unclassified	root	N/A	16.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.76 %
Unclassified	root	N/A	16.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.76 %
Unclassified	root	N/A	16.24 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	35.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.79 %
Unclassified	root	N/A	16.24 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.56 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	35.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.08 %
Unclassified	root	N/A	16.24 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.56 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	35.04 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	22.22 %
Unclassified	root	N/A	16.24 %
Negativicutes	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes	1.71 %
candidate division NC10	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	0.85 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	33.33 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	21.37 %
Unclassified	root	N/A	16.24 %
Selenomonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales	1.71 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.85 %
unclassified candidate division NC10	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10	0.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	33.33 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	21.37 %
Unclassified	root	N/A	16.24 %
Sporomusaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Sporomusaceae	1.71 %
candidate division NC10 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	0.85 %
Limnobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Limnobacter	0.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	33.33 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	21.37 %
Unclassified	root	N/A	16.24 %
Sporomusaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Sporomusaceae	1.71 %
unclassified Limnobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Limnobacter → unclassified Limnobacter	0.85 %
candidate division NC10 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	0.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	33.33 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	21.37 %
Unclassified	root	N/A	16.24 %
Sporomusaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Sporomusaceae	1.71 %
Limnobacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Limnobacter → unclassified Limnobacter → Limnobacter sp.	0.85 %
candidate division NC10 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	0.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_101097116	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	511	Open in IMG/M
3300001431\|F14TB_100688134	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300002562\|JGI25382J37095_10030433	All Organisms → cellular organisms → Bacteria	2117	Open in IMG/M
3300002914\|JGI25617J43924_10065690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1325	Open in IMG/M
3300004157\|Ga0062590_100161990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1553	Open in IMG/M
3300005171\|Ga0066677_10054477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2010	Open in IMG/M
3300005181\|Ga0066678_10701925	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	674	Open in IMG/M
3300005328\|Ga0070676_11194502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	578	Open in IMG/M
3300005332\|Ga0066388_106857432	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	573	Open in IMG/M
3300005332\|Ga0066388_107895934	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	532	Open in IMG/M
3300005347\|Ga0070668_101044036	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	736	Open in IMG/M
3300005440\|Ga0070705_101533098	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300005446\|Ga0066686_10108636	Not Available	1795	Open in IMG/M
3300005447\|Ga0066689_10839757	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	570	Open in IMG/M
3300005451\|Ga0066681_10186656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1236	Open in IMG/M
3300005457\|Ga0070662_101473339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	587	Open in IMG/M
3300005467\|Ga0070706_101277180	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	673	Open in IMG/M
3300005467\|Ga0070706_101689271	Not Available	577	Open in IMG/M
3300005518\|Ga0070699_101116447	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	723	Open in IMG/M
3300005530\|Ga0070679_100181184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2079	Open in IMG/M
3300005543\|Ga0070672_101178090	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	682	Open in IMG/M
3300005552\|Ga0066701_10733975	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300005554\|Ga0066661_10747742	Not Available	573	Open in IMG/M
3300005555\|Ga0066692_10048010	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2359	Open in IMG/M
3300005556\|Ga0066707_10461904	Not Available	824	Open in IMG/M
3300005557\|Ga0066704_10465336	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	835	Open in IMG/M
3300005558\|Ga0066698_10854115	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	585	Open in IMG/M
3300005568\|Ga0066703_10137005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1464	Open in IMG/M
3300005568\|Ga0066703_10286492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	998	Open in IMG/M
3300005586\|Ga0066691_10089123	Not Available	1718	Open in IMG/M
3300005713\|Ga0066905_101087595	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	709	Open in IMG/M
3300005764\|Ga0066903_100368187	All Organisms → cellular organisms → Bacteria	2338	Open in IMG/M
3300006046\|Ga0066652_100950439	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	818	Open in IMG/M
3300006794\|Ga0066658_10449198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	702	Open in IMG/M
3300006844\|Ga0075428_102148443	Not Available	577	Open in IMG/M
3300006847\|Ga0075431_101108724	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	756	Open in IMG/M
3300006880\|Ga0075429_101914468	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300006881\|Ga0068865_101915996	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	537	Open in IMG/M
3300007076\|Ga0075435_100177569	Not Available	1799	Open in IMG/M
3300007265\|Ga0099794_10021639	All Organisms → cellular organisms → Bacteria	2924	Open in IMG/M
3300009012\|Ga0066710_104123157	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	543	Open in IMG/M
3300009792\|Ga0126374_10203495	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1255	Open in IMG/M
3300009819\|Ga0105087_1041196	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	732	Open in IMG/M
3300010046\|Ga0126384_10028967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Sporomusaceae	3660	Open in IMG/M
3300010046\|Ga0126384_10805541	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	841	Open in IMG/M
3300010320\|Ga0134109_10289013	Not Available	628	Open in IMG/M
3300010359\|Ga0126376_10632947	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1017	Open in IMG/M
3300010360\|Ga0126372_10411502	Not Available	1238	Open in IMG/M
3300010360\|Ga0126372_10938865	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	871	Open in IMG/M
3300010360\|Ga0126372_12381111	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	580	Open in IMG/M
3300010399\|Ga0134127_10198354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1864	Open in IMG/M
3300011270\|Ga0137391_10924368	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300012189\|Ga0137388_11243779	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300012199\|Ga0137383_11207735	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	543	Open in IMG/M
3300012355\|Ga0137369_10618053	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	752	Open in IMG/M
3300012355\|Ga0137369_10701617	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300012358\|Ga0137368_10014810	All Organisms → cellular organisms → Bacteria	7674	Open in IMG/M
3300012358\|Ga0137368_10826001	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300012359\|Ga0137385_11302035	Not Available	589	Open in IMG/M
3300012363\|Ga0137390_10394427	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1363	Open in IMG/M
3300012363\|Ga0137390_11025605	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300012922\|Ga0137394_10021794	All Organisms → cellular organisms → Bacteria	5142	Open in IMG/M
3300012922\|Ga0137394_10298942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1376	Open in IMG/M
3300012922\|Ga0137394_10991995	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	698	Open in IMG/M
3300012925\|Ga0137419_11638876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	548	Open in IMG/M
3300012930\|Ga0137407_10098471	All Organisms → cellular organisms → Bacteria	2501	Open in IMG/M
3300012944\|Ga0137410_11478409	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300013297\|Ga0157378_12369849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	582	Open in IMG/M
3300015373\|Ga0132257_103595359	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	564	Open in IMG/M
3300017654\|Ga0134069_1001065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	7136	Open in IMG/M
3300017792\|Ga0163161_12044690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	509	Open in IMG/M
3300018053\|Ga0184626_10204656	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	835	Open in IMG/M
3300018064\|Ga0187773_10062830	Not Available	1742	Open in IMG/M
3300018074\|Ga0184640_10233982	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300018074\|Ga0184640_10509514	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300018076\|Ga0184609_10262365	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	808	Open in IMG/M
3300018076\|Ga0184609_10272352	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300025910\|Ga0207684_10922354	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	733	Open in IMG/M
3300025922\|Ga0207646_10781319	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	851	Open in IMG/M
3300025941\|Ga0207711_12080676	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	510	Open in IMG/M
3300026297\|Ga0209237_1139453	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	972	Open in IMG/M
3300026309\|Ga0209055_1305570	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	502	Open in IMG/M
3300026313\|Ga0209761_1010939	All Organisms → cellular organisms → Bacteria	5905	Open in IMG/M
3300026323\|Ga0209472_1109032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1097	Open in IMG/M
3300026328\|Ga0209802_1065547	Not Available	1733	Open in IMG/M
3300026342\|Ga0209057_1053745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1874	Open in IMG/M
3300026342\|Ga0209057_1127021	Not Available	931	Open in IMG/M
3300027018\|Ga0208475_1030286	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	534	Open in IMG/M
3300027068\|Ga0209898_1032730	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300027646\|Ga0209466_1047886	All Organisms → cellular organisms → Bacteria → Acidobacteria	865	Open in IMG/M
3300027671\|Ga0209588_1203877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	615	Open in IMG/M
3300027875\|Ga0209283_10192295	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1356	Open in IMG/M
3300028590\|Ga0247823_11367081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	531	Open in IMG/M
3300031184\|Ga0307499_10086850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	835	Open in IMG/M
3300031226\|Ga0307497_10182447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	896	Open in IMG/M
3300031564\|Ga0318573_10018047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Sporomusaceae	3133	Open in IMG/M
3300031720\|Ga0307469_12233617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	533	Open in IMG/M
3300031797\|Ga0318550_10288199	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	796	Open in IMG/M
3300031799\|Ga0318565_10583071	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	538	Open in IMG/M
3300031820\|Ga0307473_10230608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Limnobacter → unclassified Limnobacter → Limnobacter sp.	1121	Open in IMG/M
3300031911\|Ga0307412_10771561	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300031981\|Ga0318531_10184405	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	939	Open in IMG/M
3300032000\|Ga0310903_10285231	Not Available	807	Open in IMG/M
3300032002\|Ga0307416_100084524	All Organisms → cellular organisms → Bacteria → Proteobacteria	2697	Open in IMG/M
3300032075\|Ga0310890_10359652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1067	Open in IMG/M
3300032174\|Ga0307470_10688229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	777	Open in IMG/M
3300032205\|Ga0307472_102473334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	528	Open in IMG/M
3300032770\|Ga0335085_10085616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4120	Open in IMG/M
3300033412\|Ga0310810_10785807	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	863	Open in IMG/M
3300033432\|Ga0326729_1058518	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	591	Open in IMG/M
3300033550\|Ga0247829_10811110	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300034817\|Ga0373948_0206239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	515	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.32%
Host-Associated	Host-Associated	13.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.05%
Plants	Host-Associated → Plants	13.68%
Aquatic	Environmental → Aquatic	4.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.20%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.11%
Sediment	Environmental → Aquatic → Sediment	4.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.56%
Peat	Environmental → Terrestrial → Peat	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.39%
Loam	Environmental → Terrestrial → Soil → Loam	15.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.27%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.71%
Sand	Environmental → Terrestrial → Soil → Sand	1.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.21%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	23.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.27%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.42%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.56%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.71%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	18.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.09%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.13%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.42%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.56%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.71%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.71%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.85%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009819	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300027018	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 (SPAdes)	Environmental	Open in IMG/M
3300027068	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033432	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF6AY SIP fraction	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1010971162	3300000955	Soil	MSDKVDGKTASPYGYPFWDWMAKEDPEYVRARGPLSALSVGEGKELSIKHREMVII
F14TB_1006881342	3300001431	Soil	MSARPKKVDGKTASPYGYPFWDWVAKEDPEYVKARGPLSALSVGEGKELSIKH
JGI25382J37095_100304331	3300002562	Grasslands Soil	MSTPQKKQVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELSIKH
JGI25617J43924_100656901	3300002914	Grasslands Soil	MSKTSPYGYPWAEWLAREDPAYAAARAPLSELSVGEGKELSIKHREMVII
Ga0062590_1001619902	3300004157	Soil	MSEAKAGSPYGYPWAEWLAREDPQYAAARAPVSALSVGEGKELSIKHREMVIIGILAFRGRED
Ga0066677_100544771	3300005171	Soil	MSKSPYGYPWAEWLAREDPAYAAARAPLSELSVGEGKELSIKHREMVIIGIL
Ga0066678_107019251	3300005181	Soil	MSTRLKKKVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELSIKHREMVIIGI
Ga0070676_111945022	3300005328	Miscanthus Rhizosphere	MSDPKASSPYGYPWAEWLAREDPQYAAARAPVSALSVGEGKELSIKHREMVIIGI
Ga0066388_1043955792	3300005332	Tropical Forest Soil	MAKKNGKTNGGPKSASVYGYPWAKWLAQEDPEYAAARGPVSALSVGEGKALSIKHREMVIIGILA
Ga0066388_1068574322	3300005332	Tropical Forest Soil	MAKNGGTKTKKLDGKTASPYGYPFWDWVAKEDPEYVKARQPLSALSIGEGKELSV
Ga0066388_1078959342	3300005332	Tropical Forest Soil	MAKNGGTRTKKLDGKAASPYGYPFWDWVAKEDPEYVKARQPLSALSIGEGKELSV
Ga0070668_1010440362	3300005347	Switchgrass Rhizosphere	MSARPKKTDSKVDGKTASPYGYPFWDWVAKEDPEYVKARGPLSALSVGEGKELSIKHREMVIIGI
Ga0070705_1015330982	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MPTRPAAAKPKKPEGKANSPYGYPFWDWVAREDPEYVRARQPLSALSIGEGRELSVKYREMVII
Ga0070694_1010478371	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MKKNGGAKKAAPKSASVYGYPWAKWLANEDPDYAAARGPVSALSVGEGKALSIKYREMVIIGILAFR
Ga0066686_101086361	3300005446	Soil	MSEKVDGKTASPYGYPFWDWMAKEDPEYVKARGPLSALSVGEGKELSIKHREMVII
Ga0066689_108397572	3300005447	Soil	MSTRLKKKVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELSIKHREMVIIGIL
Ga0066681_101866561	3300005451	Soil	MSKTSPYGYPWAEWLAREDPAYAAARAPLSELSVGEGKELSIKHREMVIIGIL
Ga0070662_1014733392	3300005457	Corn Rhizosphere	MSDPKAGSPYGYPWAEWLAREDPQYAAARAPVSALSVGEGKELSIKHREMVIIGILAF
Ga0070706_1012771802	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSTRDGVAKAKKRDGKAASPYGYPFWDWVAKEDPEYVKARQPLSALSIGEGKELSIKYREMVII
Ga0070706_1016892712	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSDKVDGQTASPYGYPFWDWVAREDPEYVRARGPLSALSVGEGKELSIKHREMVIIGIL
Ga0070699_1011164471	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSDKVDGKTASPYGYPFWDWMAKEDPEYVRARGPLSALSVGEGKELSIKHREMVIIG
Ga0070679_1001811843	3300005530	Corn Rhizosphere	MPARPAAPKPKKVDGKAASPYGYPFWEWVAREDPEYVRARQPLSALSIGEGKELSVKYREMVIIG
Ga0070672_1011780901	3300005543	Miscanthus Rhizosphere	MPTRPAAAKPKKPEGKANSPYGYPFWDWVAREDPEYVRARQPLSALSIGEGRELSVKYREMVIIGILA
Ga0070695_1008588441	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MKKNGGAKKAAPKSASVYGYPWAKWLANEDPDYAAARGPVSALSVGEGKELSIKYREMVIIGILAFR
Ga0066701_107339752	3300005552	Soil	MSRRGPARGAAKPGAKAVSPYGYPFWEWVAREDPEYVRARQPLSELSIGEGKELSVKHREMVIIGILAFRGR
Ga0066661_107477421	3300005554	Soil	MSDKVDGTTASPYGYPFWDWVAKEDPEYVRARGPLTQLSVGEGKELSIKHREMVIIGIL
Ga0066692_100480101	3300005555	Soil	MSDKVDGQTASPYGYPFWDWVAREDPEYVRARGPLSALSVGEGKELSIKHREMVIIGI
Ga0066707_104619042	3300005556	Soil	MSDKVDGRTASPYGYPFWDWMAKEDPDYVRARGPLSAVSVGEGKELSIKYREMV
Ga0066704_104653362	3300005557	Soil	MSARPKKVDGKTASPYGYPFWDWVAKEDPEYVKARGPLSALSVGEGKELS
Ga0066698_108541151	3300005558	Soil	MSTRLKKKVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELSIKHREM
Ga0066699_109705852	3300005561	Soil	MKKQGTKQPAVKSASVYGYPWAKWLASEDPDYAAARGPVSALSVGEGKELSIKHREM
Ga0066703_101370052	3300005568	Soil	MSKSPYGYPWADWLAREDPQYATARQPVSELSVGEGKELSIKHREMVIIGILAFRGREDGVV
Ga0066703_102864922	3300005568	Soil	MSAQRPAKKPPAKSGSPYGYPWADWLAREDPQYTAARAPVSALSVGDGKELSIKHREMVIIGILAFRG
Ga0066691_100891231	3300005586	Soil	MSDKVDGKTASPYGYPFWDWVAKEDPEYVRARGPLTQLSVGEGKELSIKHRE
Ga0066905_1010875952	3300005713	Tropical Forest Soil	MAKNGGTSTKKLDGKAASPYGYPFWDWVAKEDPEYVKARQPLSALSIGEGKELSV
Ga0066903_1003681871	3300005764	Tropical Forest Soil	MSARPKKVDSKVDGKTASPYGYPFWDWVAKEDPEYVKARGPLSALSVGEGKELSIKHREMVIIGIL
Ga0066652_1009504392	3300006046	Soil	MSTRDGVAKAKKLDGKAASPYGYPFWDWVAKEDPEYVKARQPLSALSIGEGKELSIK
Ga0066658_104491981	3300006794	Soil	MSKTSPYGYPWAEWLAREDPAYAAARAPLSELSVGEGKELSIKHREMVIIGILAFRGREDGVVAHMRR
Ga0075428_1021484432	3300006844	Populus Rhizosphere	MKAAATKKTNGKVVSPYGYPFWEWVAREDPEYVAARQPLSELSIGEGKALRVKHREMVIIGILA
Ga0075431_1011087242	3300006847	Populus Rhizosphere	MSARPKKIDSKVDGKTASPYGYPFWDWVAKEDPEYVTARGPLMELSVGEGKALSIKHKEMIIIGILA
Ga0075429_1019144681	3300006880	Populus Rhizosphere	MPTRPAAAAKPKKVNGKSNSPYGYPFWDWVAREDPEYVRARQPLSALSIGEGKELSVKYREM
Ga0068865_1019159962	3300006881	Miscanthus Rhizosphere	MSVRDGAAKAKKLDGKATSPYGYPFWDWVAKEDPEYVKARQPLSALSIGEGRELSIKHREMVIIGI
Ga0075435_1001775691	3300007076	Populus Rhizosphere	MSDKVDGTTASPYGYPFWDSVAKEDPEYVRARGPLTQLSVGEGKELSIKHRE
Ga0099794_100216391	3300007265	Vadose Zone Soil	MSETSPYGYPWADWLAREDPAYAAARQPVSALSVGEGKELSIKHREMVIIGILA
Ga0066710_1041231571	3300009012	Grasslands Soil	MSTRLKKKVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELSIKHREMVIIGILAF
Ga0126374_102034953	3300009792	Tropical Forest Soil	MAKNGGTKTKKLDGKAASPYGYPFWDWVAKEDPEYVKARQPLSALSIGEGKELSVKYREMVIIG
Ga0105087_10411961	3300009819	Groundwater Sand	MSEKVDGHTASPYGYPFWDWVAKEDPEYVKARQPLSDLSFGDGKELSIKYRE
Ga0126384_100289671	3300010046	Tropical Forest Soil	MAKNGGTKTKKLDGKTASPYGYPFWDWVAKEDPEYVKARQPFAALSIGEGKELSVRYREMVIIGILA
Ga0126384_108055412	3300010046	Tropical Forest Soil	MAKNGGTRTKKLDGNAASPYGYPFWDWVAKEDPEYVKARQPLSALSIGEGKELSV
Ga0134109_102890131	3300010320	Grasslands Soil	MSEKVDGKTASPYGYPFWDWMAKEDPEYVKARGPLSALSVGEGKELSIK
Ga0126376_106329471	3300010359	Tropical Forest Soil	MMRKGHDAQKATKVTGKSASPYGYPFWDWVAKEDPEYVKARGPLSALSVGEGKELSIRHREMVIIGILA
Ga0126372_104115021	3300010360	Tropical Forest Soil	MSTRRPTAKAKKSNGPQVDGKAASPYGYPFWDWVAKEDPDYIKAREPVSDLSLGAGK
Ga0126372_109388652	3300010360	Tropical Forest Soil	LTKADIRAASPYGYAYADWLAREDPEYVRARAPLSELSFGEGKELSIKHKEMVIIGILAFRGRQDGVVAHMCRAV*
Ga0126372_123811112	3300010360	Tropical Forest Soil	MARSGKKVSGRTASPYGYPFWDWVAKEDPDYVEARGPLSKLSVGEGKELSIKHR
Ga0134127_101983541	3300010399	Terrestrial Soil	MSEAKAGSPYGYPWAEWLAREDPQYAAARAPVSALSVGEGKELSIKHREMVIIGI
Ga0137391_109243681	3300011270	Vadose Zone Soil	MSTPQRKQVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKEL
Ga0137388_112437791	3300012189	Vadose Zone Soil	MSTPQRKQVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELSIKHREM
Ga0137383_112077351	3300012199	Vadose Zone Soil	MSEKVDGKTASPYGYPFWDWMAKEDPEYVKARGPLSALSVGEGKELSIKHREM
Ga0137369_106180532	3300012355	Vadose Zone Soil	MSTPQQKKVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELS
Ga0137369_107016171	3300012355	Vadose Zone Soil	MSTPQKKQVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEG
Ga0137368_100148101	3300012358	Vadose Zone Soil	MSTPQQKKVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGK
Ga0137368_108260012	3300012358	Vadose Zone Soil	MSTPQKKQVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGK
Ga0137385_113020352	3300012359	Vadose Zone Soil	MSEKVDGKTASPYGYPFWDWMAKEDPEYVKARGPLSALSVGEGKELSIKH
Ga0137390_103944273	3300012363	Vadose Zone Soil	MSTRLKKKVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELS
Ga0137390_110256053	3300012363	Vadose Zone Soil	MSTPQRKQVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELS
Ga0137394_100217941	3300012922	Vadose Zone Soil	MSTSPYGYPWADWLAREDPQYAAARQPVSALSVGEGKELSIKHREMVIIG
Ga0137394_102989422	3300012922	Vadose Zone Soil	MSKSPYGYPWAEWLAREDPAYAAARAPLSELSVGEGKELSIKHREMVIIGI
Ga0137394_109919952	3300012922	Vadose Zone Soil	MSEKVDGKTASPYGYPFWDWMAKEDPEYVKARGPLSALSVGEGKELSIKHREMVIIGILA
Ga0137419_116388761	3300012925	Vadose Zone Soil	MSKTSPYGYPWAEWLAREDPAYAAARAPLSELSVGEGKELSIKH
Ga0137407_100984713	3300012930	Vadose Zone Soil	MKKQGTKQPAVKSASVYGYPWAKWLASEDPDYAAARGPVSALSVGEGKELSIKHREMVIIGILAF
Ga0137410_114784091	3300012944	Vadose Zone Soil	MSSPYGYPFWDWVAKEDPEYVAAREPLSELSIGQGKELAIKHREMVIIGILAFRGRKEGV
Ga0157378_123698492	3300013297	Miscanthus Rhizosphere	MSDPKASSPYGYPWAEWLAREDPQYAAARAPVSALSVGEGKELSIKHRE
Ga0137411_11646452	3300015052	Vadose Zone Soil	MPKKNGKTGSPKSASVYGYPWAKWLAQADPDYAAARGPVSALSVGEGKELSIKYREMVIIGIL
Ga0132257_1035953592	3300015373	Arabidopsis Rhizosphere	MSDKVDGKTASPYGYPFWDWMAKEDPEYVRARGPLSALSVGEGKELSIKH
Ga0134069_10010651	3300017654	Grasslands Soil	MSKSPYGYPWADWLAREDPQYAAARQPVSELSVGEGKELSIKHREMVIIGI
Ga0163161_120446902	3300017792	Switchgrass Rhizosphere	MSDPKASSPYGYPWAEWLAREDPQYAAARAPVSALSVGEGKELSIKHR
Ga0184626_102046563	3300018053	Groundwater Sediment	MSTPQQKQVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELSIKHREMVIIGILAFRGREE
Ga0187773_100628301	3300018064	Tropical Peatland	MSDKVDGKTASPYGYPFWDWMAKEDPEYVRARGPLSALSVGEGKELSIKHREMVIIGI
Ga0184640_102339822	3300018074	Groundwater Sediment	MSTRPAAAKPKKVDGKAASPYGYPFWDWVAREDPEYVRARQPLSALSIGEGKELSV
Ga0184640_105095142	3300018074	Groundwater Sediment	MPTRPAAAKPKKVDGKAASPYGYPFWDWVAREDPEYVRARQPLSALSIGEGKELSV
Ga0184609_102623651	3300018076	Groundwater Sediment	MSTPQKKQVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELSIKHREMVIIGILAFR
Ga0184609_102723523	3300018076	Groundwater Sediment	MSTPQQKQVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELSIKHREMVIIGIL
Ga0207684_109223541	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSTRDGVAKAKKRDGKAASPYGYPFWDWVAKEDPEYVKARQPLSALSIGEGKELSIKYREMVI
Ga0207646_107813191	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSTRDGVAKAKKRDGKAASPYGYPFWDWVAKEDPEYVKARQPLSALSIGEGKELSIKYRE
Ga0207711_120806762	3300025941	Switchgrass Rhizosphere	MSDKVDGKTASPYGYPFWDWMAKEDPEYVRARGPLSTLSVGEGKELSIKHRE
Ga0209237_11394533	3300026297	Grasslands Soil	MSTPQKKQVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELSIKHREMVIIGILAFRGREEGV
Ga0209055_13055702	3300026309	Soil	MSDKVDGKTASPYGYPFWDWMAKEDPDYVRARGPLSAVSVGEGKELSIKHREMVII
Ga0209761_10109391	3300026313	Grasslands Soil	MSTPQKKQVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELSIKHRE
Ga0209472_11090322	3300026323	Soil	MSKTSPYGYPWAEWLAREDPAYAAARAPLSELSVGEGKELSIKHR
Ga0209802_10655471	3300026328	Soil	MSDKVDGTTASPYGYPFWDWVAKEDPEYVRARGPLTQLSVGEGKELSIKHREMVIIGILA
Ga0209057_10537451	3300026342	Soil	MSKTSPYGYPWAEWLAREDPAYAAARAPLSELSVGEGKELSIKHREMVIIGILAFRVR
Ga0209057_11270212	3300026342	Soil	MSDKVDGTTASPYGYPFWDWVAKEDPEYVRARGPLTQLSVGEGKELSIKHRE
Ga0208475_10302861	3300027018	Soil	MSARDGAAKAKKVNGKAASPYGYPFWDWVAKEDPEYVKARQPLSALSIGEGKELS
Ga0209898_10327302	3300027068	Groundwater Sand	MSTPQKKQVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELSIKHREMVIIGI
Ga0209466_10478861	3300027646	Tropical Forest Soil	MSARPKKIDSKVDGKTASPYGYPFWDWVAKEDPEYVKARGPLSALSVGEGKELSIKHR
Ga0209588_12038772	3300027671	Vadose Zone Soil	MKKQPGSKAAGKGASPYGYPWADWLAREDPQYAAARLPVSALSVGEGKELSIK
Ga0209283_101922951	3300027875	Vadose Zone Soil	MSTRLKKKVDGKTASPYGYPFWDWVAKEDPEYVLARQPLSELSVGEGKELSIKHR
Ga0247823_113670812	3300028590	Soil	MSDAKAGSPYGYPWAEWLAREDPQYAAARAPLSALSVGEGKELSIKHREMVIIGILAFRGREDGVVAHMR
Ga0307499_100868502	3300031184	Soil	MSDAKAGSPYGYPWAEWLAREDPQYAAARAPVSALSVGEGKELSIKHREMVIIGILAFRGREDGVVA
Ga0307497_101824471	3300031226	Soil	MSDPKASSPYGYPWAEWLAREDPQYAAARAPVSALSVGEGKELSIKHREMVIIGILAFRG
Ga0318573_100180471	3300031564	Soil	MSGRNGGTKTRKVDGKTASPYGYPFWDWVAKEDPEYVKARQPLSALSIGEGKELAIKYRE
Ga0307469_122336171	3300031720	Hardwood Forest Soil	MSTSPYGYPWADWLAREDPEYAAARQQASALAIGHGKELSIKHREMVIIGILAF
Ga0318550_102881991	3300031797	Soil	MSGRNGGTKTRKVDGKTASPYGYPFWDWVAKEDPEYVKARQPLSALSIGEGKELAIKYR
Ga0318565_105830712	3300031799	Soil	MSDKVDGKTASPYGYPFWDWMAKEDPEYVRARGPLSALSVGEGKELSIKHREMVI
Ga0307473_102306081	3300031820	Hardwood Forest Soil	MSDKVDGKTASPYGYPFWDWMAKEDPEYVRARGPLSALSVGEGKELSIKHREMVIIGIL
Ga0307412_107715612	3300031911	Rhizosphere	MNTRPAAAKPKKLDGKGASPYGYPFWEWVAREDPEYVRARQPLSALSIGEGRELSVKYRE
Ga0318531_101844051	3300031981	Soil	MSDKVDGKTASPYGYPFWDWMAKEDPEYVRARGPLSTLSVGEGKELSIKHREMVII
Ga0310903_102852311	3300032000	Soil	MPTRPAAAKPKKPEGKANSPYGYPFWDWVAREDPEYVRARQPLSALSIGEGRELSVKYRE
Ga0307416_1000845241	3300032002	Rhizosphere	MKAPSATKKPAVKSASPYGYPWATWLAREDPAYTAARAPLSALSVGEGKELSVKHREMVIIGILAFRG
Ga0310890_103596522	3300032075	Soil	MSDAKAGSPYGYPWAEWLAREDPQYAAARAPLSALSVGEGKELSIKHREMVIIGILAFRGRE
Ga0307470_106882291	3300032174	Hardwood Forest Soil	MSDAKAGSPYGYPWAEWLAREDPQYAAARAPVSALSVGEGKELSIKHREMVIIGILAFRGREDGVVAHMRR
Ga0307472_1024733341	3300032205	Hardwood Forest Soil	MSTSPYGYPWADWLAREDPAYAAARQPVSALSVGEGKELSIKHREMV
Ga0335085_100856168	3300032770	Soil	MKKGNGARKATKVTGKSASPYGYPFWEWVAKEDPEYVKARGPLSALSIGPGKELSIRHRE
Ga0310810_107858071	3300033412	Soil	MPARSTAVKRKKVDGKSASPYGYPFWEWVAREDPDYVRARQPLSQLSIGEGKELSVKYR
Ga0326729_10585182	3300033432	Peat Soil	MGTRNGAAKTKKIDGKTASPYGYPFWDWVAREDPDYVKARQPLSALSIGEGKELSIRHREMVI
Ga0247829_108111101	3300033550	Soil	MRTRPASAKSKAVNGKAASPYGYPFWDWVAREDPEYVKARQPLSALSIGEGKELSIRHREMV
Ga0373948_0206239_370_513	3300034817	Rhizosphere Soil	MSEAKAGSPYGYPWAEWLAREDPQYAAARAPVSALSVGEGKELSIKHR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077956

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences