NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F077719

Metagenome / Metatranscriptome Family F077719

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F077719
Family Type Metagenome / Metatranscriptome
Number of Sequences 117
Average Sequence Length 72 residues
Representative Sequence MQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATR
Number of Associated Samples 109
Number of Associated Scaffolds 117

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 84.62 %
% of genes near scaffold ends (potentially truncated) 28.21 %
% of genes from short scaffolds (< 2000 bps) 87.18 %
Associated GOLD sequencing projects 106
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (67.521 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(23.077 % of family members)
Environment Ontology (ENVO) Unclassified
(29.915 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(45.299 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 29.85%    β-sheet: 29.85%    Coil/Unstructured: 40.30%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 117 Family Scaffolds
PF03795YCII 5.98
PF00313CSD 1.71
PF13460NAD_binding_10 1.71
PF00730HhH-GPD 0.85
PF00400WD40 0.85
PF13610DDE_Tnp_IS240 0.85
PF07647SAM_2 0.85
PF04226Transgly_assoc 0.85
PF11799IMS_C 0.85
PF03118RNA_pol_A_CTD 0.85
PF00239Resolvase 0.85
PF13683rve_3 0.85
PF07311Dodecin 0.85
PF16694Cytochrome_P460 0.85
PF00346Complex1_49kDa 0.85
PF13378MR_MLE_C 0.85
PF03466LysR_substrate 0.85
PF13407Peripla_BP_4 0.85
PF13817DDE_Tnp_IS66_C 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 117 Family Scaffolds
COG2350YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHisSecondary metabolites biosynthesis, transport and catabolism [Q] 5.98
COG01223-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylaseReplication, recombination and repair [L] 0.85
COG0177Endonuclease IIIReplication, recombination and repair [L] 0.85
COG0202DNA-directed RNA polymerase, alpha subunit/40 kD subunitTranscription [K] 0.85
COG0649NADH:ubiquinone oxidoreductase 49 kD subunit (chain D)Energy production and conversion [C] 0.85
COG1059Thermostable 8-oxoguanine DNA glycosylaseReplication, recombination and repair [L] 0.85
COG1194Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairsReplication, recombination and repair [L] 0.85
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 0.85
COG22313-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamilyReplication, recombination and repair [L] 0.85
COG2261Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein familyGeneral function prediction only [R] 0.85
COG2452Predicted site-specific integrase-resolvaseMobilome: prophages, transposons [X] 0.85
COG3261Ni,Fe-hydrogenase III large subunitEnergy production and conversion [C] 0.85
COG3360Flavin-binding protein dodecinGeneral function prediction only [R] 0.85

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms67.52 %
UnclassifiedrootN/A32.48 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2166559005|cont_contig109837Not Available536Open in IMG/M
2170459010|GIO7OMY01CIABSNot Available525Open in IMG/M
2170459011|GI3SL7401D370UNot Available519Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101915536Not Available516Open in IMG/M
3300001407|JGI20192J14887_1005273All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangdongense1721Open in IMG/M
3300001593|JGI12635J15846_10055492All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2995Open in IMG/M
3300001593|JGI12635J15846_10182336All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum1406Open in IMG/M
3300001593|JGI12635J15846_10867554Not Available516Open in IMG/M
3300001661|JGI12053J15887_10212490All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria977Open in IMG/M
3300001661|JGI12053J15887_10486539All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Rikenella → Rikenella microfusus589Open in IMG/M
3300002245|JGIcombinedJ26739_100505504All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1086Open in IMG/M
3300002245|JGIcombinedJ26739_101187200Not Available652Open in IMG/M
3300002886|JGI25612J43240_1024099All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium898Open in IMG/M
3300004091|Ga0062387_100962390Not Available651Open in IMG/M
3300004092|Ga0062389_100462461All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1407Open in IMG/M
3300005165|Ga0066869_10072174All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria648Open in IMG/M
3300005168|Ga0066809_10080569Not Available772Open in IMG/M
3300005178|Ga0066688_10732050All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069625Open in IMG/M
3300005329|Ga0070683_100062429All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3465Open in IMG/M
3300005329|Ga0070683_100218700All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1810Open in IMG/M
3300005336|Ga0070680_100152688All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1939Open in IMG/M
3300005439|Ga0070711_100773532All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum813Open in IMG/M
3300005440|Ga0070705_101448027Not Available574Open in IMG/M
3300005447|Ga0066689_10804149All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069584Open in IMG/M
3300005518|Ga0070699_100943671All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium791Open in IMG/M
3300005555|Ga0066692_10695453All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069631Open in IMG/M
3300005559|Ga0066700_10765629All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069654Open in IMG/M
3300005713|Ga0066905_101675322All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales584Open in IMG/M
3300005983|Ga0081540_1007020All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium8103Open in IMG/M
3300006041|Ga0075023_100002737All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium4285Open in IMG/M
3300006172|Ga0075018_10340106All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum750Open in IMG/M
3300006893|Ga0073928_10209219All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1521Open in IMG/M
3300007255|Ga0099791_10026825All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2506Open in IMG/M
3300007258|Ga0099793_10065998All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1626Open in IMG/M
3300007265|Ga0099794_10018497All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3125Open in IMG/M
3300007788|Ga0099795_10165579All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 1(2017)915Open in IMG/M
3300009038|Ga0099829_11243428All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium616Open in IMG/M
3300009143|Ga0099792_10833365All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 1(2017)606Open in IMG/M
3300009174|Ga0105241_10280449All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1423Open in IMG/M
3300010043|Ga0126380_10294383Not Available1151Open in IMG/M
3300010159|Ga0099796_10334977Not Available649Open in IMG/M
3300010856|Ga0126358_1066133Not Available584Open in IMG/M
3300010861|Ga0126349_1294191All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum529Open in IMG/M
3300011269|Ga0137392_11400523Not Available558Open in IMG/M
3300011270|Ga0137391_10647725All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium882Open in IMG/M
3300012198|Ga0137364_10666934Not Available784Open in IMG/M
3300012203|Ga0137399_10258799All Organisms → cellular organisms → Bacteria1429Open in IMG/M
3300012206|Ga0137380_10272560All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1521Open in IMG/M
3300012210|Ga0137378_10543112Not Available1071Open in IMG/M
3300012350|Ga0137372_10161768All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1819Open in IMG/M
3300012353|Ga0137367_10650252Not Available736Open in IMG/M
3300012354|Ga0137366_10465946Not Available915Open in IMG/M
3300012685|Ga0137397_11118631All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium572Open in IMG/M
3300012922|Ga0137394_10171273All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1851Open in IMG/M
3300012925|Ga0137419_10709848All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae816Open in IMG/M
3300012925|Ga0137419_11411447All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium588Open in IMG/M
3300012927|Ga0137416_10403189Not Available1159Open in IMG/M
3300012929|Ga0137404_11065524All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium741Open in IMG/M
3300012944|Ga0137410_11829116Not Available537Open in IMG/M
3300013297|Ga0157378_13316578Not Available500Open in IMG/M
3300013306|Ga0163162_12979508All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum544Open in IMG/M
3300015206|Ga0167644_1000972All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium22780Open in IMG/M
3300015372|Ga0132256_102714919All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium594Open in IMG/M
3300018027|Ga0184605_10312566Not Available711Open in IMG/M
3300018071|Ga0184618_10452597Not Available540Open in IMG/M
3300018072|Ga0184635_10008335All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei3508Open in IMG/M
3300018072|Ga0184635_10018838Not Available2510Open in IMG/M
3300018078|Ga0184612_10565091All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium544Open in IMG/M
3300019887|Ga0193729_1027630All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2416Open in IMG/M
3300019888|Ga0193751_1007931All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5743Open in IMG/M
3300019888|Ga0193751_1067725All Organisms → cellular organisms → Bacteria1469Open in IMG/M
3300019890|Ga0193728_1119945All Organisms → cellular organisms → Bacteria1193Open in IMG/M
3300020004|Ga0193755_1227587Not Available515Open in IMG/M
3300020580|Ga0210403_11189651Not Available588Open in IMG/M
3300020583|Ga0210401_10142201Not Available2244Open in IMG/M
3300021082|Ga0210380_10064900Not Available1588Open in IMG/M
3300021171|Ga0210405_10143185All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1892Open in IMG/M
3300021180|Ga0210396_10216420All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1708Open in IMG/M
3300021363|Ga0193699_10415623All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria556Open in IMG/M
3300021411|Ga0193709_1123444All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales527Open in IMG/M
3300021475|Ga0210392_10518490Not Available879Open in IMG/M
3300021479|Ga0210410_11106019Not Available683Open in IMG/M
3300022533|Ga0242662_10021951Not Available1454Open in IMG/M
3300022557|Ga0212123_10133827All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1944Open in IMG/M
3300025463|Ga0208193_1023269All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1628Open in IMG/M
3300025912|Ga0207707_10007256All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium9646Open in IMG/M
3300025921|Ga0207652_10690614All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium911Open in IMG/M
3300026351|Ga0257170_1036559All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium671Open in IMG/M
3300026355|Ga0257149_1057438Not Available565Open in IMG/M
3300026369|Ga0257152_1013901All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 1(2017)850Open in IMG/M
3300026374|Ga0257146_1056599All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 1(2017)635Open in IMG/M
3300026475|Ga0257147_1069120All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 1(2017)540Open in IMG/M
3300026490|Ga0257153_1016087All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1518Open in IMG/M
3300026524|Ga0209690_1058724All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1687Open in IMG/M
3300026551|Ga0209648_10193886All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1558Open in IMG/M
3300026557|Ga0179587_10330586All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0182986Open in IMG/M
3300026920|Ga0208575_1006189All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1241Open in IMG/M
3300027173|Ga0208097_1046242Not Available507Open in IMG/M
3300027334|Ga0209529_1046212All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium741Open in IMG/M
3300027512|Ga0209179_1092993Not Available669Open in IMG/M
3300027565|Ga0209219_1020313All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1622Open in IMG/M
3300027603|Ga0209331_1100710Not Available706Open in IMG/M
3300027692|Ga0209530_1034972All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1492Open in IMG/M
3300027738|Ga0208989_10217701Not Available628Open in IMG/M
3300027783|Ga0209448_10112206Not Available913Open in IMG/M
3300027855|Ga0209693_10468857All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium605Open in IMG/M
3300027875|Ga0209283_10873996Not Available546Open in IMG/M
3300027903|Ga0209488_10208349All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1472Open in IMG/M
3300027908|Ga0209006_10198609All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1743Open in IMG/M
3300027910|Ga0209583_10001124All Organisms → cellular organisms → Bacteria → Proteobacteria7890Open in IMG/M
3300028673|Ga0257175_1039844All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300029636|Ga0222749_10246601Not Available908Open in IMG/M
3300031474|Ga0170818_104419955All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei835Open in IMG/M
3300031708|Ga0310686_106444909All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei4950Open in IMG/M
3300031753|Ga0307477_10243171All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei1247Open in IMG/M
3300032180|Ga0307471_103754619All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum537Open in IMG/M
3300032515|Ga0348332_12096468All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae841Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil23.08%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil12.82%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil11.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.13%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment4.27%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere4.27%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.56%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.56%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.56%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring1.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.71%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.71%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil1.71%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.71%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.71%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil1.71%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.85%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland0.85%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.85%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.85%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.85%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.85%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.85%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.85%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.85%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.85%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.85%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.85%
SimulatedEngineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated0.85%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2166559005Simulated microbial communities from Lyon, FranceEngineeredOpen in IMG/M
2170459010Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)EnvironmentalOpen in IMG/M
2170459011Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect Gram positive lysis 0-10cmEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001407Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002886Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cmEnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005165Soil and rhizosphere microbial communities from Laval, Canada - mgHMCEnvironmentalOpen in IMG/M
3300005168Soil and rhizosphere microbial communities from Laval, Canada - mgLPCEnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005983Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010856Boreal forest soil eukaryotic communities from Alaska, USA - W4-2 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010861Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300015206Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))EnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018072Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2EnvironmentalOpen in IMG/M
3300018078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coexEnvironmentalOpen in IMG/M
3300019887Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2EnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300019890Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1EnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redoEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021363Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2EnvironmentalOpen in IMG/M
3300021411Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2EnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300025463Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026351Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-BEnvironmentalOpen in IMG/M
3300026355Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-AEnvironmentalOpen in IMG/M
3300026369Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-AEnvironmentalOpen in IMG/M
3300026374Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-AEnvironmentalOpen in IMG/M
3300026475Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-AEnvironmentalOpen in IMG/M
3300026490Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-AEnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300026920Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes)EnvironmentalOpen in IMG/M
3300027173Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)EnvironmentalOpen in IMG/M
3300027334Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027512Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027565Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027603Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027692Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027738Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027783Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300028673Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-BEnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
cont_0836.000060202166559005SimulatedMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIKIGLVKGSHMDGIRAAREERLRLIGKAMESTRM
F62_002189302170459010Grass SoilLWLIGIPEGTYLENAIEVRPFDLKISVSPHGGIDEWQWTLSIGNGAPIKIGLVKGSRMDGIRAAREERLGLIGKAMESTRMTHPKRP
F64_063396202170459011Grass SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIKIGLVKGSHMDGIRAAREERLRLIG
INPhiseqgaiiFebDRAFT_10191553623300000364SoilMPSEYDPFDLRISVSPHGGIDEWQLTLSIGDDAPIESGVVKGARMDGIRAAREVRMRLIARAVEATR*
JGI20192J14887_100527333300001407Arctic Peat SoilMQSKYDPFDLEISVSPHGGIAEWQWTLSIGDGAPIEIGVVKGSRMDGIRAAREERMRLIGRAVEATR*
JGI12635J15846_1005549223300001593Forest SoilMPSEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPIENGVVKGSRMDGIRAAGEERMRLIARAVEATCVCRRP*
JGI12635J15846_1018233623300001593Forest SoilMPSEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVEATR*
JGI12635J15846_1086755413300001593Forest SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEKGVVKGSRMDGIRAAREERL
JGI12053J15887_1021249013300001661Forest SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIKIGVVKGSRMDGIRAAREERLRLICKAVEATRMRLHPKRPRDPNQLA
JGI12053J15887_1048653913300001661Forest SoilMQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRDDPPQTP*
JGIcombinedJ26739_10050550433300002245Forest SoilMQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIETGVVKGSRMDGIRAAREERLRLIGNVWKPPDDPPQTP*
JGIcombinedJ26739_10118720013300002245Forest SoilMQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLXGKAMEATR*
JGI25612J43240_102409913300002886Grasslands SoilMPSEYDPFDLKISVNPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIVRAVEAIR*
Ga0062387_10096239023300004091Bog Forest SoilMPPEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRTAREERMRLIARAVEATRRPTTSSR*
Ga0062389_10046246143300004092Bog Forest SoilFDLKISVSPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRTAREERMRLIARAVEATRRPTTSSR*
Ga0066869_1007217423300005165SoilMGLISFPEGTYSRMPSEYDPFDLKISVNPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIVRAVEAIR*
Ga0066809_1008056923300005168SoilMPSEYDPFDLKISVNPHGGIDEWQWTLSIGDDAPIESGVVKGSSMDGIRAAREERMRLIVRAVEAIR*
Ga0066688_1073205033300005178SoilFDLKISVCPHGGIDEWQWTLSIGNSAPIETGVVKGSRMDGIRAAREERLRLICKAVEATRMKLHPKRPR*
Ga0070683_10006242913300005329Corn RhizosphereTSDEGSELSAADEMGLISHQGHICRMPSEYDPFDLTISVSPHGGIDEWQWTLSIEDDAPIESGVVKGSRMDGIRAAREERMRLIARAVEATR*
Ga0070683_10021870053300005329Corn RhizosphereMPSEYDPFDLKISVGPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVE
Ga0070680_10015268843300005336Corn RhizosphereMPSEYDPFDLKISVGPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVEATR*
Ga0070711_10077353223300005439Corn, Switchgrass And Miscanthus RhizosphereEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPVASGVVKGSRMDGIRAAREERMRLIARAVDATR*
Ga0070705_10144802723300005440Corn, Switchgrass And Miscanthus RhizosphereEGTYLEDAIEVRPFDLKISVSPHGGIDEWQWTLSIGNRAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRPKGTG*
Ga0066689_1080414913300005447SoilMQSKYDPFDLEISVCPHGGIDEWQWTLSIGNGAPIKIGVVKGSRMDGIRAAREERLRLICKAVEATRMKLHPKRPR*
Ga0070699_10094367113300005518Corn, Switchgrass And Miscanthus RhizosphereMPSEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVDATR*
Ga0066692_1069545323300005555SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIKIGVVKGSRMDGIRAAREERLRLICKAVEATRMKLHPKRPR*
Ga0066700_1076562913300005559SoilHIWRMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNRAPIEIGVVKGSRMDGIRAAREERLRLICKAVEATRMKLHPKRPR*
Ga0066905_10167532223300005713Tropical Forest SoilMQSKYDPFDLEISVSPRGGIDEWQWTLSIGNGAPMKVGVVKGSRMDGIRAAREERLRLIGKAIEATRKAT*
Ga0081540_1007020173300005983Tabebuia Heterophylla RhizosphereMQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPMKIGVVKGSRMDGIRAAREERLRLIGKAIEATRKAT*
Ga0075023_10000273753300006041WatershedsMLPEYDPFDLKISVSPHGGIDEWQWTLSIGDNAPIESGVVKGSRMDGIRAAREERMRLIVRAVEATR*
Ga0075018_1034010623300006172WatershedsMPSEYDPFDLEISVSPHGGIDEWQWTLSIADDAPIESGVVKGSRMDGIRAAREERMRLIARAVEATR*
Ga0073928_1020921923300006893Iron-Sulfur Acid SpringMHSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIEKGVVKGSRMDGIRAAREERLRLIGKARKPPDDPPQTP*
Ga0099791_1002682523300007255Vadose Zone SoilMQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRPKGTG*
Ga0099793_1006599823300007258Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNRAPIEIGVVKGSRMDGIRAAREERLRLIGKAIEATRMTHPKRPKGTR*
Ga0099794_1001849743300007265Vadose Zone SoilMQAKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRVDGIRAAREERLRLIGKAMEATR*
Ga0099795_1016557923300007788Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRPKGTG*
Ga0099829_1124342823300009038Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNSAPIETGVVKGSRMDGIRAAREERLRLICKAMEATRMTHPKRPKGTR*
Ga0099792_1083336513300009143Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAIEATRMTHPKRPKGTR*
Ga0105241_1028044923300009174Corn RhizosphereMPSEYDPFDLKISVNPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVEATR*
Ga0126380_1029438313300010043Tropical Forest SoilMQSKHDPFDLEISVSPHGGIDEWQWTLSIGNGAPIKIGVVKGSRMDGIRAAREERLRLISKAIEATTRKAT*
Ga0099796_1033497723300010159Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNRAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRPKGTG*
Ga0126358_106613313300010856Boreal Forest SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGALIEIGVVKGSRMDGIRAAREERLRLIGKANGSHPMTDPKR
Ga0126349_129419123300010861Boreal Forest SoilMPSEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPIEIGVVKGSRMDGIRAARAERMRLIARAVEATR*
Ga0137392_1140052323300011269Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKVMEATKHPKRPRDTPS*
Ga0137391_1064772513300011270Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAVEATRMTHPKRPKGTR*
Ga0137364_1066693413300012198Vadose Zone SoilMQSKYDPFDLEISVCPHGGIDEWQWTLSIGNSAPIETGVVKGSRMDGIRAAREERLRLIGKVMEATKHPKRPRDTPS*
Ga0137399_1025879923300012203Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNSAPIETGVVKGSRMDGIRAAREERLRLIGKAIEATRMTHPKRPKGTR*
Ga0137380_1027256033300012206Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGSGAPIKIGVVKGSRMDGIRAAREERLRLICKAVEATRMKLHPKRPR*
Ga0137378_1054311213300012210Vadose Zone SoilGHIWRMQSKYDPFDLKISVSRHGGIDEWQWTLSIGSGAPIKIGVVKGSRMDGIRAAREERLRLICKAVEATRMKLHPKRPR*
Ga0137372_1016176813300012350Vadose Zone SoilMQSKYDPFDLKISVSRHGGIDEWQWTLSIGSGAPIKIGVVKGSRMDGIRAAREERLRLICKAVEATRMKLHPKRPR*
Ga0137367_1065025223300012353Vadose Zone SoilMPSEYDPFDLKISVNPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERLRLICKAVEATRMKLHPKRPR*
Ga0137366_1046594633300012354Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIKKGVVKGSRMDGIRAAREERLRLICKAVEATRMKLHPKRPR*
Ga0137397_1111863113300012685Vadose Zone SoilMPSEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIVRA
Ga0137394_1017127323300012922Vadose Zone SoilMPSEYDPFDLKISVNPHGGIDEWQWTLSIGDGAPIESGVVKGSRMDGIRAAREERMRLIVRAVEAIR*
Ga0137419_1070984823300012925Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLTLIGKAMEATRMTHHKRR*
Ga0137419_1141144713300012925Vadose Zone SoilMPSDDPFDLKISVSPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVEATR*
Ga0137416_1040318913300012927Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKVMEATKHPKRPRGGPS*
Ga0137404_1106552413300012929Vadose Zone SoilMPSEYDPFDLRISVNPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIVRAVEAIR*
Ga0137410_1182911613300012944Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIKIGVVKGSRMDGIRAAREERLRLIGKAMEATR*
Ga0157378_1331657813300013297Miscanthus RhizosphereMPSEYDPFDLKISVNPHGGIDEWQWTLSIGNRAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRPKGTG*
Ga0163162_1297950813300013306Switchgrass RhizosphereLSPKGHIRGMPSEYDPFDLKISVSPQGGIYEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVEATR*
Ga0167644_100097223300015206Glacier Forefield SoilMPSEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVEATCVCRKP*
Ga0132256_10271491913300015372Arabidopsis RhizosphereVMQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIKIGVVKGSRMDGIRAAREERLRLIGKAIEATCKAT*
Ga0184605_1031256623300018027Groundwater SedimentMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRPKGTG
Ga0184618_1045259713300018071Groundwater SedimentMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRPKGPPAAKHHRDE
Ga0184635_1000833573300018072Groundwater SedimentMPSEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVEATR
Ga0184635_1001883823300018072Groundwater SedimentMPSQYDPFDLKISVNPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIVRAVEVEAIR
Ga0184612_1056509113300018078Groundwater SedimentMPSEYDPFDLKISVNPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVEATR
Ga0193729_102763033300019887SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLTLIGKAMEATRMTHPKRR
Ga0193751_100793123300019888SoilMHSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRKAT
Ga0193751_106772543300019888SoilDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRK
Ga0193728_111994513300019890SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRP
Ga0193755_122758723300020004SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLTLIGKAMEATRMTHP
Ga0210403_1118965123300020580SoilMQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIETGVVKGSRMDGIRAAREERL
Ga0210401_1014220133300020583SoilMQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATR
Ga0210380_1006490013300021082Groundwater SedimentMPSEYDPFDLKISVNPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIVRAVEAIR
Ga0210405_1014318533300021171SoilLIGIPEGTYLEDAIEYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATR
Ga0210396_1021642013300021180SoilMQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIETGVVKGSRMDGIRAAREERLRLIGKAMEATR
Ga0193699_1041562313300021363SoilMQSEYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRR
Ga0193709_112344413300021411SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRR
Ga0210392_1051849013300021475SoilSKYDPFNLKISVSPHGGIDEWQWTLSIEDDAPIDSGVVKGSRMDGIRAAREERMRLIARAVEATR
Ga0210410_1110601923300021479SoilMPSKYDPFSLKISVSPHGGIDEWQWTLSIGNGAPIKIGVVKGSRMDGIRAAREERLKLICKAVEATRMRLHPERP
Ga0242662_1002195153300022533SoilFDLKISVSLHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVEATR
Ga0212123_1013382713300022557Iron-Sulfur Acid SpringMHSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIEKGVVKGSRMDGIRAAREERLRLIGKARKPPDDPPQTP
Ga0208193_102326933300025463PeatlandMPSEYDPYDLKISVSPHGGIDEWQWTLSIGYDAPIERGVVRGSRMDGIRAAREERMRLIARAVEATCVCRKP
Ga0207707_10007256153300025912Corn RhizosphereMPSEYDPFDLKISVGPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVEATR
Ga0207652_1069061423300025921Corn RhizosphereMPSEYDPFDLKISVGPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVEAT
Ga0257170_103655913300026351SoilMPSEYDPFDLKISVNPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREER
Ga0257149_105743823300026355SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNRAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEVTRMTHPKRPKGTG
Ga0257152_101390123300026369SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNRAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRPKGTG
Ga0257146_105659923300026374SoilSLMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNRAPIEIGVVKGSRMDGIRAAREERLRLIGKAIEATRMTHPKRPKGTR
Ga0257147_106912013300026475SoilIWRMQSKYDPFDLKISVRPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAIEATRMTHPKRPKGTG
Ga0257153_101608733300026490SoilMQSKYDPFDLKISVRPHGGIDEWQWTLSIGNGAPIEIGAVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRPKGTG
Ga0209690_105872413300026524SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIKIGVVKGSRMDGIRAAREERLRLICKAVEATRMKLHPKRPR
Ga0209648_1019388623300026551Grasslands SoilKGHIWRMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRPKGTG
Ga0179587_1033058623300026557Vadose Zone SoilMPSEYDPFDLKISVNPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERRD
Ga0208575_100618913300026920SoilMQSKYDPFDLEISVSHHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMKATR
Ga0208097_104624223300027173Forest SoilMQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIETGVVKGSRMDGIRAAREERLR
Ga0209529_104621233300027334Forest SoilMPSEYDPFDLKISVSPRGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAPREERMRLIARAVEASCVCR
Ga0209179_109299323300027512Vadose Zone SoilMQSKYDPFDLKISVRPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRPKGTG
Ga0209219_102031323300027565Forest SoilMPSEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIAKAVEATR
Ga0209331_110071013300027603Forest SoilVVDRAPPKGHIWRMQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATR
Ga0209530_103497213300027692Forest SoilMPSEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPIENGVVKGSRMDGIRAAGEERMRLIARAVEATCVCRRP
Ga0208989_1021770113300027738Forest SoilMQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRDDPPQTP
Ga0209448_1011220623300027783Bog Forest SoilMPSEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRTAREERMRLIARAVEATRRPTTSSR
Ga0209693_1046885713300027855SoilMPSEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRL
Ga0209283_1087399623300027875Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRPKGTR
Ga0209488_1020834923300027903Vadose Zone SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAIEATRMTHPKRPKGTR
Ga0209006_1019860943300027908Forest SoilMQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIETGVVKGSRMDGIRAAREERLRLIGNVWKPPDDPPQTP
Ga0209583_1000112483300027910WatershedsMLPEYDPFDLKISVSPHGGIDEWQWTLSIGDNAPIESGVVKGSRMDGIRAAREERMRLIVRAVEATR
Ga0257175_103984423300028673SoilMQAKYDPFDLEISVNPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATRMTHPKRR
Ga0222749_1024660123300029636SoilMPSEYDPFELEISVSPHRGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVEATR
Ga0170818_10441995513300031474Forest SoilMQSKYDPFDLKISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAIESTRMTHAKRP
Ga0310686_10644490923300031708SoilMPSEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAGEERMRLIARAVEATCVCRRP
Ga0307477_1024317133300031753Hardwood Forest SoilSVSPNGHIWRMQSKYDPFDLEISVSPHGGIDEWQWTLSIGNGAPIEIGVVKGSRMDGIRAAREERLRLIGKAMEATR
Ga0307471_10375461913300032180Hardwood Forest SoilMPSEYDPFDLKISVSLHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAREERMRLIARAVEATR
Ga0348332_1209646823300032515Plant LitterMGLISLPEGLIRGMPSEYDPFDLKISVSPHGGIDEWQWTLSIGDDAPIESGVVKGSRMDGIRAAGEERMRLIARAVEASCVCRRP

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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