NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F077696

Metagenome / Metatranscriptome Family F077696

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F077696
Family Type Metagenome / Metatranscriptome
Number of Sequences 117
Average Sequence Length 44 residues
Representative Sequence VSVLDPPAQINAGDAVAVTVIDEPTETVTEAVPEQPLEFVPVTE
Number of Associated Samples 51
Number of Associated Scaffolds 84

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 21.30 %
% of genes near scaffold ends (potentially truncated) 33.33 %
% of genes from short scaffolds (< 2000 bps) 86.32 %
Associated GOLD sequencing projects 44
AlphaFold2 3D model prediction Yes
3D model pTM-score0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (63.248 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(29.915 % of family members)
Environment Ontology (ENVO) Unclassified
(60.684 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(60.684 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.26
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A63.25 %
All OrganismsrootAll Organisms36.75 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002906|JGI25614J43888_10086721Not Available857Open in IMG/M
3300002906|JGI25614J43888_10086721Not Available857Open in IMG/M
3300005533|Ga0070734_10258162Not Available999Open in IMG/M
3300005537|Ga0070730_10178963Not Available1424Open in IMG/M
3300005537|Ga0070730_10178963Not Available1424Open in IMG/M
3300005537|Ga0070730_10714348Not Available634Open in IMG/M
3300005618|Ga0068864_100674036Not Available1008Open in IMG/M
3300005618|Ga0068864_100674036Not Available1008Open in IMG/M
3300005618|Ga0068864_101672381All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes641Open in IMG/M
3300005841|Ga0068863_101543288Not Available673Open in IMG/M
3300005841|Ga0068863_101768861Not Available628Open in IMG/M
3300005841|Ga0068863_102313926All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes547Open in IMG/M
3300005841|Ga0068863_102313926All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes547Open in IMG/M
3300005844|Ga0068862_102305622Not Available550Open in IMG/M
3300005844|Ga0068862_102305622Not Available550Open in IMG/M
3300005844|Ga0068862_102305622Not Available550Open in IMG/M
3300006173|Ga0070716_100124760All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1618Open in IMG/M
3300006173|Ga0070716_100124760All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1618Open in IMG/M
3300006358|Ga0068871_102260022Not Available518Open in IMG/M
3300006881|Ga0068865_101766189All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes558Open in IMG/M
3300006881|Ga0068865_101766189All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes558Open in IMG/M
3300009093|Ga0105240_10396279Not Available1556Open in IMG/M
3300009093|Ga0105240_11489739All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae710Open in IMG/M
3300009143|Ga0099792_10865874Not Available596Open in IMG/M
3300009545|Ga0105237_12531924Not Available524Open in IMG/M
3300010397|Ga0134124_10611854Not Available1068Open in IMG/M
3300010397|Ga0134124_11682293All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Gelidibacter → Gelidibacter algens666Open in IMG/M
3300010397|Ga0134124_11954590Not Available623Open in IMG/M
3300010397|Ga0134124_12271602Not Available583Open in IMG/M
3300010397|Ga0134124_13015227Not Available515Open in IMG/M
3300010397|Ga0134124_13188015All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes502Open in IMG/M
3300010400|Ga0134122_10383067All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1236Open in IMG/M
3300010400|Ga0134122_10383067All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1236Open in IMG/M
3300010400|Ga0134122_10407313All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1203Open in IMG/M
3300010400|Ga0134122_12622040Not Available555Open in IMG/M
3300010400|Ga0134122_12622040Not Available555Open in IMG/M
3300010401|Ga0134121_10629614All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1008Open in IMG/M
3300010401|Ga0134121_12219392Not Available586Open in IMG/M
3300010401|Ga0134121_12219392Not Available586Open in IMG/M
3300010401|Ga0134121_12967242Not Available521Open in IMG/M
3300010401|Ga0134121_13251028Not Available503Open in IMG/M
3300010403|Ga0134123_11743908All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes675Open in IMG/M
3300011442|Ga0137437_1091273All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1041Open in IMG/M
3300011442|Ga0137437_1091273All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1041Open in IMG/M
3300011442|Ga0137437_1091273All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1041Open in IMG/M
3300012201|Ga0137365_11102557All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium572Open in IMG/M
3300012201|Ga0137365_11102557All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium572Open in IMG/M
3300012203|Ga0137399_11009499Not Available701Open in IMG/M
3300012203|Ga0137399_11091273Not Available672Open in IMG/M
3300012207|Ga0137381_10581329All Organisms → cellular organisms → Bacteria976Open in IMG/M
3300012207|Ga0137381_10581329All Organisms → cellular organisms → Bacteria976Open in IMG/M
3300012212|Ga0150985_123041101Not Available786Open in IMG/M
3300012469|Ga0150984_113904455Not Available510Open in IMG/M
3300012683|Ga0137398_10834253All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes644Open in IMG/M
3300012683|Ga0137398_10998148All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium580Open in IMG/M
3300012683|Ga0137398_11262892Not Available502Open in IMG/M
3300012683|Ga0137398_11262892Not Available502Open in IMG/M
3300012924|Ga0137413_11257820Not Available592Open in IMG/M
3300012924|Ga0137413_11257820Not Available592Open in IMG/M
3300012925|Ga0137419_11461588All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes578Open in IMG/M
3300012925|Ga0137419_11461588All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes578Open in IMG/M
3300012925|Ga0137419_11951562Not Available504Open in IMG/M
3300012927|Ga0137416_12190542Not Available508Open in IMG/M
3300012927|Ga0137416_12190542Not Available508Open in IMG/M
3300012929|Ga0137404_10889698Not Available812Open in IMG/M
3300012929|Ga0137404_11143072All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium715Open in IMG/M
3300012930|Ga0137407_10593685Not Available1039Open in IMG/M
3300012944|Ga0137410_10709179Not Available839Open in IMG/M
3300012944|Ga0137410_11072744All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Gelidibacter → Gelidibacter algens688Open in IMG/M
3300012944|Ga0137410_11072744All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Gelidibacter → Gelidibacter algens688Open in IMG/M
3300012944|Ga0137410_11700176Not Available555Open in IMG/M
3300012984|Ga0164309_10727706Not Available790Open in IMG/M
3300012984|Ga0164309_11119739Not Available656Open in IMG/M
3300012984|Ga0164309_11119739Not Available656Open in IMG/M
3300012984|Ga0164309_11949224Not Available503Open in IMG/M
3300012985|Ga0164308_10359827All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → unclassified Marinilabiliales → Marinilabiliales bacterium1177Open in IMG/M
3300012985|Ga0164308_10359827All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → unclassified Marinilabiliales → Marinilabiliales bacterium1177Open in IMG/M
3300013306|Ga0163162_12924392Not Available549Open in IMG/M
3300014325|Ga0163163_12687319All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma arboris555Open in IMG/M
3300014325|Ga0163163_12687319All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma arboris555Open in IMG/M
3300014325|Ga0163163_12687319All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma arboris555Open in IMG/M
3300014969|Ga0157376_11365110Not Available740Open in IMG/M
3300015052|Ga0137411_1068628All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1141Open in IMG/M
3300015052|Ga0137411_1068628All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1141Open in IMG/M
3300015241|Ga0137418_11293731Not Available509Open in IMG/M
3300015242|Ga0137412_11171472Not Available541Open in IMG/M
3300015245|Ga0137409_11297224All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → unclassified Marinilabiliales → Marinilabiliales bacterium571Open in IMG/M
3300015245|Ga0137409_11540176Not Available514Open in IMG/M
3300018073|Ga0184624_10463351Not Available555Open in IMG/M
3300020000|Ga0193692_1111290Not Available566Open in IMG/M
3300020070|Ga0206356_11690857All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2025Open in IMG/M
3300020078|Ga0206352_10492263All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes801Open in IMG/M
3300020078|Ga0206352_10492263All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes801Open in IMG/M
3300020580|Ga0210403_10081744Not Available2605Open in IMG/M
3300020580|Ga0210403_10081744Not Available2605Open in IMG/M
3300020580|Ga0210403_10081744Not Available2605Open in IMG/M
3300020580|Ga0210403_10081744Not Available2605Open in IMG/M
3300020580|Ga0210403_10081744Not Available2605Open in IMG/M
3300020580|Ga0210403_10081744Not Available2605Open in IMG/M
3300021178|Ga0210408_10845183Not Available715Open in IMG/M
3300026088|Ga0207641_11233095Not Available748Open in IMG/M
3300026088|Ga0207641_11464499Not Available684Open in IMG/M
3300026095|Ga0207676_10861199Not Available887Open in IMG/M
3300026095|Ga0207676_10861199Not Available887Open in IMG/M
3300026095|Ga0207676_12587590All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma arboris504Open in IMG/M
3300026116|Ga0207674_11498168All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes644Open in IMG/M
3300026320|Ga0209131_1164840Not Available1098Open in IMG/M
3300027857|Ga0209166_10298940All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae847Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil29.91%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil16.24%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere13.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.98%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil4.27%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere3.42%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil2.56%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.56%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere2.56%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.56%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.71%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.71%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.85%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.85%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.85%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.85%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.85%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.85%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002906Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cmEnvironmentalOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011442Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2EnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300020000Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1EnvironmentalOpen in IMG/M
3300020069Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020070Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25614J43888_1008672113300002906Grasslands SoilVSVDEPPEQIVEGDAVAVTLGEELTVTVIEAVFEHPIEFVPVTE*
JGI25614J43888_1008672123300002906Grasslands SoilVLELPAQIVEGDADAVTFGVEPTETITDTVFEHPLELVPVTE*
Ga0070734_1025816213300005533Surface SoilVAVSVLDPPVQIDAGDAVAETVIDDPTETVTDAVPEQPEEFVPVTEYV
Ga0070730_1017896313300005537Surface SoilVAGEAVAVTVSDEPTETVTDAVPEQPLELVPVTE*
Ga0070730_1017896323300005537Surface SoilVAPLAVSVLEPPAHIVAGEAVAATVSDEPTETVTDAVFEQPLELVPVTE*
Ga0070730_1071434823300005537Surface SoilVAPLAVRVLEPPAQIVDGDAVAVTFGELPTETVIDAVFEQPLEFVPVTE*
Ga0068864_10067403623300005618Switchgrass RhizosphereVAVSVLDPPAHIDAGDAVAATTIDEPTETVTDALPEQPLEFVPVTE*
Ga0068864_10067403633300005618Switchgrass RhizosphereVSVLDPPAHIDSGDAVAETVVDEPTDTVTDAVPEQPLEFVPVTE*
Ga0068864_10162053523300005618Switchgrass RhizosphereVLDDPAHTVEGDAVAVTFNPLPTDTVTDAVPEQPAELVPVTE*
Ga0068864_10167238113300005618Switchgrass RhizosphereVSVLEPPAHIVAGEAVADTVSDEPTETVTETVLEQPLEFVPVTE
Ga0068863_10154328833300005841Switchgrass RhizosphereVAVSVLDPPAHIVAGDAVAATFSEAPTETVTDAVREQPPELVPVTE*
Ga0068863_10176886113300005841Switchgrass RhizosphereAQIDASDAVALTAIDEPTDTVTEAVPEHPPAFVPVTE*
Ga0068863_10231392613300005841Switchgrass RhizosphereVPLAVSVDEPPAQIVDGDAVAVTFGDVPTETVTDAVPEQPLEFVPVTE*
Ga0068863_10231392623300005841Switchgrass RhizosphereVLDPPAQIVEGEADADTAIDEPTETVIDADPEHPLEFVPVTE*
Ga0068862_10230562213300005844Switchgrass RhizosphereLAVSVDDPPEQIVDGDAVAVTFGVEPTETVTEAVPEQPLAFVPVTE*
Ga0068862_10230562223300005844Switchgrass RhizosphereVSVLDPPEQMDAGDAVAVTVIDDPTETVTETVFEHPLEFVPVTE*
Ga0068862_10230562233300005844Switchgrass RhizosphereVSVDDPPEQIVEGDAVAVTFGVEPTETVTETVFEHPL
Ga0070716_10012476043300006173Corn, Switchgrass And Miscanthus RhizosphereVAVSVLEPPGHIVAGDAVAATVREEPTVTVTDAVPEHPLELVPVTE*
Ga0070716_10012476053300006173Corn, Switchgrass And Miscanthus RhizosphereAVSVLEPPGHIVAGDAVAATVREEPTETVTDAVPEHPLELVPVTE*
Ga0068871_10226002223300006358Miscanthus RhizosphereVAPLAVSVDEPPEHIVVGEAVAVTFGAVPTETVTDTVFEQPLEFVPVTE*
Ga0068865_10176618913300006881Miscanthus RhizosphereVSVLDPPAQIDAGDAVAVTVIDEPTETVTDDVFEQPLEL
Ga0068865_10176618923300006881Miscanthus RhizosphereVLDPPGQIDAGEADAVTFGKALTETVTDATPEQPLAFVPVTE*
Ga0105240_1039627913300009093Corn RhizosphereVLDPPEQIVEGDAVAVIFGVEPTETVTETVFEQPLEFEPVTEYV
Ga0105240_1148973913300009093Corn RhizosphereVAPLAVNVDEPPAQIIDDDAVAVTFGEELTETVTLTVFEQPLELVPVTE*
Ga0099792_1086587413300009143Vadose Zone SoilVSVLDPPAQIDAGEAVAVTAIDDPTETVTDAVPEHPLELVPVTE*
Ga0105237_1253192413300009545Corn RhizosphereVSVDEPPVQIVAGDAVAATVSDEPTVTVTDAVPEHPLAFVPVTE*
Ga0134124_1061185423300010397Terrestrial SoilVAVNVLDPPEHIDVGDAVAATVRDEPTVTVTEAVPEQPLAFVPVTE*
Ga0134124_1168229313300010397Terrestrial SoilVSVDDPPEQIVDGDAVAVTFGVEPTETVTEAVPEQPLAFVPVTE*
Ga0134124_1195459023300010397Terrestrial SoilVAVSVLDPPAHIAEGDAVAPTVIDEPTDTVTDAEPEHPLEFVPVTE*
Ga0134124_1227160213300010397Terrestrial SoilAPVAVSVLDPPTQIDAGDAVAVTAMDEPTVTVTDAVPEQPLAFVPVTE*
Ga0134124_1301522723300010397Terrestrial SoilYEVAPLAVSVLDPPGQIDAGEAVAVTFGKALTETVTDATPEHPLAFVPVTE*
Ga0134124_1318801513300010397Terrestrial SoilVLDPPAQMVAGEAAAEIVTDVPTVTVTEPVPEQPLEFVPVTE*
Ga0126383_1094362013300010398Tropical Forest SoilVIVLEDPEHTVDGEAVAVTFRPLPTVTVTEAVPEQPPEPVPVTEYA
Ga0134122_1038306723300010400Terrestrial SoilVSVLDPPVQIEAGEAEAVTVIDPPTETVTDAVFEQPLALVPVTV*
Ga0134122_1038306733300010400Terrestrial SoilVAPLAVSVLDPPAQIVDGDADAVTFGKALTETVTDVVPEQPLAFVPVTE*
Ga0134122_1040731313300010400Terrestrial SoilVSVLDPPGQIDAGEAVAVTFGKALTETVTDATPEHPLAF
Ga0134122_1075616713300010400Terrestrial SoilVAPLAVKVDDVPAQIEDGDALAVTFGAALTVTVTDAVLEQPAVVPVTV*
Ga0134122_1075616723300010400Terrestrial SoilMDVGDADAETVKDEPTETVTVAVFEQPLELVPVTE*
Ga0134122_1262204013300010400Terrestrial SoilLDPPAHIVAGEAEAVTVRDAPTETVTEAVFEQPLEFVPVTE*
Ga0134122_1262204023300010400Terrestrial SoilVLDPPAHIVAGEAEAVTVRDAPTETVTEAVFEQPLEFVPVTE
Ga0134121_1062961413300010401Terrestrial SoilVSVLDPPGQIDAGEADAVTFGKALTETVTDAAPEQPLAFVPVTE*
Ga0134121_1221939213300010401Terrestrial SoilVAVSVLEPPAHIDAGDAVAETVIEEPTVTVTDAVPEQPLAFVP
Ga0134121_1221939233300010401Terrestrial SoilVAVSVLEPPAHIDAGEAVAETVIEEPTVTVTDAVPEQPLAFVPVTVYVVVEV*
Ga0134121_1296724223300010401Terrestrial SoilVSVLDPPVQIVDGDAVAVTLGEVPTETVTDAVAEHPLEFVPVTE*
Ga0134121_1325102813300010401Terrestrial SoilMDAGDAVAVTVIDEPTVTVTEVVFEQPLELVPVTV*
Ga0134123_1174390823300010403Terrestrial SoilVSVLDPPAQIDAGDAVAVTVIDEPTATVTEAVPEQPLELVPVTE*
Ga0137437_109127323300011442SoilVSVDEPPAQIVDGDAEAVTLGKAPTETVTEIVFEQPLEFVPVTE*
Ga0137437_109127333300011442SoilVSVLDPPTQIVAGEAEAVTVTDDPTETVTDATFEQPLEFVPVTE*
Ga0137437_109127343300011442SoilVSVLDPPAQIDAGDAEAVTFGKGLIETVTEAVPEHPLEFVPVTE*
Ga0137365_1110255723300012201Vadose Zone SoilVSVLDPPEQIDVGDAVAVTEMDDPTVTVTEAVFEQPFELVPVTE*
Ga0137365_1110255733300012201Vadose Zone SoilDPPVQIDAGDALAVTVIDEPTVTVTEAVPEHPLEFVPVTE*
Ga0137399_1100949923300012203Vadose Zone SoilDPPTHIAAGDAIAVMSRDELTVTVTVAVPEHPLEFVPVTE*
Ga0137399_1109127323300012203Vadose Zone SoilVSVLDPPAQINAGDAVAVTVIDEPTETVTEAVPEQPLEFVPVTE*
Ga0137381_1058132913300012207Vadose Zone SoilVRVLDPPAQIVLGDAVAVTFGEALTDTVTEAVFEQPLEFVPVTE*
Ga0137381_1058132923300012207Vadose Zone SoilVSVDEAPAQIVLGEAVAVTFGEVLTDTVTETVFEQPLELVPVTE*
Ga0150985_12304110113300012212Avena Fatua RhizosphereVSILVPPAQTDEGEAVALTVMEPTETNTEAVPEHPLEFV
Ga0150984_11390445513300012469Avena Fatua RhizosphereVSVLVPPAQIDEGEAVALTVMDEPTETDTEAVPEHPL
Ga0137398_1083425323300012683Vadose Zone SoilLVAPLAVIVLEDPAHMADGEAVAVTLRPEPTETVTAAVPEQPLEFVPVTE*
Ga0137398_1099814823300012683Vadose Zone SoilVAPLAVSVLDPPAQIDAGEAVAVTVIDEPTETVTEAVPEQPLEFVPVTE*
Ga0137398_1126289223300012683Vadose Zone SoilVSVEEPPAQIEDGDAVAVTFGKELTATITEAVPEHPLELVPVTE*
Ga0137398_1126289233300012683Vadose Zone SoilVSVLDPPVQIVAGDAVAETVIDEPTETVTEAVLAQPLELV
Ga0137413_1125782013300012924Vadose Zone SoilVSVLDAPAQIDAGEAVAVTAIDDPTETVTDAVPEQPLEF
Ga0137413_1125782023300012924Vadose Zone SoilVSVLDPPVQIAAGEAVAVTVSEAPTETVTDAVPEQPLELVPVTE*
Ga0137419_1146158813300012925Vadose Zone SoilVAVSVLEPPVQIVTGDAVAETFSEAPTETVTVAVPEHPLAFVPVTEYVVV
Ga0137419_1146158823300012925Vadose Zone SoilVSVLDPPAQIDAGDAVAVTVIDEPTETVTEAVPEHPLAFVPVTE*
Ga0137419_1195156213300012925Vadose Zone SoilVAPLAVSVLDPPAQIDDGDAVAVTDSDEPTVTVTDAVPEQPLELVPVT
Ga0137416_1219054213300012927Vadose Zone SoilVSVLDPPAQIDAGDAVAVTVIDDPTVTVTEADFEQ
Ga0137416_1219054223300012927Vadose Zone SoilVSVLDPPVQIEAGDAVAATVIDEPTETVTEAVPEQPLEFVPVTE*
Ga0137404_1088969823300012929Vadose Zone SoilVAPLAVSVLDPPAQIDDGDAVAVTVMDEPTVTVTEAVPEQPLEFVPVTE*
Ga0137404_1114307223300012929Vadose Zone SoilMRVLDPPAQIVLGEAVAVTFGEVLTDTVTEAVFEQPLELVPVTE*
Ga0137407_1059368523300012930Vadose Zone SoilVAPLAVSVLDPPAQIDDGDAVAVTDSDEPTVTVTDAVPEQPLELVPVTV*
Ga0137407_1181616713300012930Vadose Zone SoilVSVDEPSEQIVEGDAVAVTLGEELTVTVIEAVFEHPIEFVPVTE*
Ga0137410_1070917923300012944Vadose Zone SoilLVAPLAVIVLDDPEHIVEGEAVAVTVRPEPTETVTEAVPEQPLELVPVTE*
Ga0137410_1107274413300012944Vadose Zone SoilVRVLEPPAQIDAGDAVAVTVTDDPTETVTEVVFEQPLELVPVTE*
Ga0137410_1107274423300012944Vadose Zone SoilVLDAPAQIVLGEAVAATFGEALTETVTEAVFEQPLEFVPVTE*
Ga0137410_1113685033300012944Vadose Zone SoilAPLAVSVLDAPAQIVPGEAVAVTFGAALTVTVIEAVFEQPIELVPVTE*
Ga0137410_1122878613300012944Vadose Zone SoilLEEPAHTVVGEAVAVTVRPLPTETVADAVPEQPLELAPVTE*
Ga0137410_1168478623300012944Vadose Zone SoilMVLDDPEHTVEGEAVAETVKLAPTDTVTDAVPEQPSGLIPVTE*
Ga0137410_1170017623300012944Vadose Zone SoilVSVEEPPAQIEDGDAVAVTLGKALTETVTDAVPEQPLEFVPVTE*
Ga0164309_1072770613300012984SoilEQISDGDAVAETVIDEPTETVTDAVLEQPLEFVPVTE*
Ga0164309_1111973913300012984SoilVAPVAVRVLEPPEHIDAGDAVAATVRDDPTVTVTEAVPEQPLAFVPVTE*
Ga0164309_1111973923300012984SoilAPVAVSVVDPPVQIVAGDAVAATVRDEPTVTVTDAAPEQPLAFVPVTE*
Ga0164309_1194922423300012984SoilDPPAHIAVGDATAVTSSDELTVTVTVAVPEHPLSFVPVTE*
Ga0164308_1035982723300012985SoilVSVLDPPGQIDAGEAVAVTFGKALTETVTVATPEHPLAFVPVTV*
Ga0164308_1035982733300012985SoilVLEPPEHIDAGDAVAATVREEPTVTVTDAVFEQPFALVPVTE*
Ga0163162_1292439213300013306Switchgrass RhizosphereVAPLAVSVLDPPGQIVAGDAVAVTFGKALIETVTDATPEHPLAFVPVTE*
Ga0163163_1268731913300014325Switchgrass RhizosphereNVEDPPEHIDDGEAEAVTLGEVPTETVTLTVFEQPLELVPVTE*
Ga0163163_1268731923300014325Switchgrass RhizosphereVAPLAVNVEEPPEQIVEGDGVAVTLGKVPTETVTDAVAEHPLEFVPVTE*
Ga0163163_1268731933300014325Switchgrass RhizosphereVAPLAVNVEDPPEHIDDGEAEAVTLGEVPTETVTLTVFEQPLELVPV
Ga0157376_1136511013300014969Miscanthus RhizosphereVLELPEHIDAGDAVAATVRDEPTETVTDAVPEQPLEFVPVTE*
Ga0137411_106862843300015052Vadose Zone SoilVSVLDPPAQIEAGDAVAVTVMDEPTETVTEAVPEHPLELVPVTE*
Ga0137411_106862853300015052Vadose Zone SoilPAQIEAGDAVAVTVMDEPTETVTEAVPEHPLELVPVTE*
Ga0137418_1129373113300015241Vadose Zone SoilVAPLAVSVLDPPAQIDAGDAVAVTVIDDPTETVTEAVPEHPLALVPVTE*
Ga0137412_1117147213300015242Vadose Zone SoilVLDAPAQIVEGEAVAATLGEALTETVTEAVFEQPLEFVPVTE*
Ga0137409_1129722423300015245Vadose Zone SoilVLDAPAQIVAGEAVAVTAMADPTETVTEAVLEQPPELVPVTK*
Ga0137409_1154017613300015245Vadose Zone SoilVLEPPAQIDAGEAVAVTVMDEPTVTVTDAVPEHPLELVPVTE*
Ga0184624_1046335123300018073Groundwater SedimentVDEPPEQIVEGDAVAVTFGVEPTVTVTLTVFEHPLEVVPVT
Ga0193692_111129033300020000SoilVDDPPEQIVEGEAVAVTFGVEPTVTVTLTVFEHPLEVVPVTEY
Ga0197907_1129298913300020069Corn, Switchgrass And Miscanthus RhizosphereVIVLDDPEHTVEGLAVAVTFNPLPTDTVTDAVPEQPPEFV
Ga0206356_1169085713300020070Corn, Switchgrass And Miscanthus RhizosphereVAPVAVSVLDPPAQIVAGEAVADTVSDEPTLTVTDAVPEHPLAFVPVTE
Ga0206352_1049226323300020078Corn, Switchgrass And Miscanthus RhizosphereVAVSVLDPPAHIDAGDAVAATTIDELTETVTDALPEQPLEFVPATE
Ga0206352_1049226333300020078Corn, Switchgrass And Miscanthus RhizospherePLAVSVLDPPAHIDPGDAVAETVVDEPTDTVTDAVPEQPLEFVPVTE
Ga0210403_1008174413300020580SoilMVLEDPAQIDEGFAVAVTVRPLPTDTVTDAVPEQPPEFVPVTE
Ga0210403_1008174423300020580SoilVSVLDPPAQIEDGDAVAVMVSDEPTETITEAVPEQPLELVPVTE
Ga0210403_1008174453300020580SoilLVAPLAVMVLEDPAHMVDGEAVAVTLRPEPTETVTEAVPEQPLELVPVTV
Ga0210403_1008174463300020580SoilVLDAPAQIDAGEAVAVTVIDEPTETVTEAVPEQPLEFVPVTE
Ga0210403_1008174473300020580SoilVLDAPGQIDAGDAVAVTFDEDPTETVTEAAPEHPLEFVPVTE
Ga0210403_1008174493300020580SoilVSVLDPPAQIVEGDAVAVTFGAEPTETVAETVLAHPLEFVPVTE
Ga0210408_1084518323300021178SoilVSVLDPPAQIDEGDAVVVTLGEELTVTVIEVVFEQPLELVPVTE
Ga0207641_1123309543300026088Switchgrass RhizosphereLDVPGHSNGSDAVAVTLRDDPTVTVTEAVPEHPLAFVPVTE
Ga0207641_1146449923300026088Switchgrass RhizosphereVAVSVLDPPAHIVAGDAVAATFSEAPTETVTDAVREQPPELVPVTE
Ga0207676_1086119923300026095Switchgrass RhizosphereVAVSVLDPPAHIDVGDAVAETTIDKLTETVTDALPEQPLEFVPVTE
Ga0207676_1086119933300026095Switchgrass RhizosphereVSVLDPPAHIDSGDAVAETVVDEPTDTVTDAVPEQPLEFVPVTE
Ga0207676_1258759033300026095Switchgrass RhizosphereSVLDPPAQIVAGDAVAVTLSDEPTETVTETVFEHPLEFVPVTE
Ga0207674_1149816823300026116Corn RhizosphereVSVDDPPEQIVEGDAVAVTLGGGLTVTVIEAVFEHPREFVPVTE
Ga0209131_116484013300026320Grasslands SoilYDVAPLAVSVLDPPEQIVAGDAVAVTASAEPTVTVTEAVPEPPPFVPVTV
Ga0209166_1029894033300027857Surface SoilVAPLAVSVLEPPAHIVAGEAVAATVSDEPTETVTDAVFEQPLELVPVTE

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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