Metagenome Family F077620

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077620
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	59 residues
Representative Sequence	MSPETARHRAALRLAFAATLAIVWGTMVREPLPGLTAVLAAQILVGMPRPPRPGQAAALV
Number of Associated Samples	90
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.88 %
% of genes near scaffold ends (potentially truncated)	94.02 %
% of genes from short scaffolds (< 2000 bps)	88.03 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.615 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (51.282 % of family members)
Environment Ontology (ENVO)	Unclassified (68.376 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (53.846 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.55% β-sheet: 0.00% Coil/Unstructured: 45.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF16576	HlyD_D23	50.43
PF13437	HlyD_3	5.98
PF11168	DUF2955	5.13
PF13533	Biotin_lipoyl_2	4.27
PF00529	CusB_dom_1	3.42
PF01594	AI-2E_transport	1.71
PF09865	DUF2092	0.85
PF07885	Ion_trans_2	0.85
PF00561	Abhydrolase_1	0.85
PF08857	ParBc_2	0.85
PF00669	Flagellin_N	0.85
PF00005	ABC_tran	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.71
COG1344	Flagellin and related hook-associated protein FlgL	Cell motility [N]	0.85
COG4318	Uncharacterized conserved protein	Function unknown [S]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.62 %
Unclassified	root	N/A	15.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.62 %
Unclassified	root	N/A	15.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.62 %
Unclassified	root	N/A	15.38 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	82.91 %
Unclassified	root	N/A	15.38 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	70.94 %
Unclassified	root	N/A	15.38 %

Name	Rank	Taxonomy	Distribution
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	26.50 %
Unclassified	root	N/A	15.38 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	23.93 %
Unclassified	root	N/A	15.38 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.85 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.85 %

Name	Rank	Taxonomy	Distribution
Sediminicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus	22.22 %
Unclassified	root	N/A	15.38 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.85 %
Acidisoma	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma	0.85 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.85 %

Name	Rank	Taxonomy	Distribution
Sediminicoccus rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	22.22 %
Unclassified	root	N/A	15.38 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.85 %
Acidisoma cellulosilyticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → Acidisoma cellulosilyticum	0.85 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003218\|JGI26339J46600_10086398	All Organisms → cellular organisms → Bacteria → Proteobacteria	784	Open in IMG/M
3300004153\|Ga0063455_100613088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	711	Open in IMG/M
3300004268\|Ga0066398_10083683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	712	Open in IMG/M
3300004633\|Ga0066395_10739035	All Organisms → cellular organisms → Bacteria → Proteobacteria	587	Open in IMG/M
3300005330\|Ga0070690_101515864	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300005355\|Ga0070671_100892243	Not Available	776	Open in IMG/M
3300005437\|Ga0070710_10206890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1242	Open in IMG/M
3300005518\|Ga0070699_100758360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	888	Open in IMG/M
3300005548\|Ga0070665_102278445	All Organisms → cellular organisms → Bacteria → Proteobacteria	545	Open in IMG/M
3300005575\|Ga0066702_10630149	All Organisms → cellular organisms → Bacteria → Proteobacteria	642	Open in IMG/M
3300005587\|Ga0066654_10874369	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300005764\|Ga0066903_107823821	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300006174\|Ga0075014_100834625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	547	Open in IMG/M
3300010038\|Ga0126315_11239322	Not Available	507	Open in IMG/M
3300010041\|Ga0126312_10514016	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300010044\|Ga0126310_10270082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1156	Open in IMG/M
3300010167\|Ga0123353_12410598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	629	Open in IMG/M
3300010343\|Ga0074044_10851694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	596	Open in IMG/M
3300010358\|Ga0126370_11511853	Not Available	639	Open in IMG/M
3300010361\|Ga0126378_11115276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	889	Open in IMG/M
3300010361\|Ga0126378_11540842	Not Available	754	Open in IMG/M
3300010361\|Ga0126378_13049544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	533	Open in IMG/M
3300010366\|Ga0126379_10009989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	6610	Open in IMG/M
3300010376\|Ga0126381_103170465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	651	Open in IMG/M
3300012971\|Ga0126369_10262799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1706	Open in IMG/M
3300012971\|Ga0126369_10558265	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300012971\|Ga0126369_11504683	Not Available	763	Open in IMG/M
3300015372\|Ga0132256_102239672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	650	Open in IMG/M
3300016270\|Ga0182036_10806962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	765	Open in IMG/M
3300016294\|Ga0182041_12040027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	534	Open in IMG/M
3300016319\|Ga0182033_12030611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	524	Open in IMG/M
3300016341\|Ga0182035_10645060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	918	Open in IMG/M
3300016371\|Ga0182034_10541057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	976	Open in IMG/M
3300016371\|Ga0182034_11048874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	705	Open in IMG/M
3300016387\|Ga0182040_11922251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	508	Open in IMG/M
3300016445\|Ga0182038_10376585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1184	Open in IMG/M
3300016445\|Ga0182038_11022197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	732	Open in IMG/M
3300016445\|Ga0182038_11230319	Not Available	668	Open in IMG/M
3300021560\|Ga0126371_12191541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	667	Open in IMG/M
3300025923\|Ga0207681_11083270	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300025931\|Ga0207644_10150606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1800	Open in IMG/M
3300025931\|Ga0207644_10792555	Not Available	792	Open in IMG/M
3300025944\|Ga0207661_11675977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	581	Open in IMG/M
3300031546\|Ga0318538_10178000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1131	Open in IMG/M
3300031546\|Ga0318538_10524157	Not Available	642	Open in IMG/M
3300031561\|Ga0318528_10677500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	552	Open in IMG/M
3300031572\|Ga0318515_10577550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	598	Open in IMG/M
3300031572\|Ga0318515_10607234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	581	Open in IMG/M
3300031572\|Ga0318515_10740802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	519	Open in IMG/M
3300031572\|Ga0318515_10750640	Not Available	515	Open in IMG/M
3300031573\|Ga0310915_10626671	Not Available	761	Open in IMG/M
3300031640\|Ga0318555_10550387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	625	Open in IMG/M
3300031679\|Ga0318561_10276734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	916	Open in IMG/M
3300031682\|Ga0318560_10081374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1652	Open in IMG/M
3300031713\|Ga0318496_10457813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	705	Open in IMG/M
3300031719\|Ga0306917_10125145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1878	Open in IMG/M
3300031724\|Ga0318500_10175632	Not Available	1018	Open in IMG/M
3300031740\|Ga0307468_102196656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	534	Open in IMG/M
3300031744\|Ga0306918_10422895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1039	Open in IMG/M
3300031748\|Ga0318492_10265953	All Organisms → cellular organisms → Bacteria → Proteobacteria	888	Open in IMG/M
3300031748\|Ga0318492_10455296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	676	Open in IMG/M
3300031754\|Ga0307475_11063318	Not Available	634	Open in IMG/M
3300031763\|Ga0318537_10022634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2196	Open in IMG/M
3300031763\|Ga0318537_10051638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → Acidisoma cellulosilyticum	1493	Open in IMG/M
3300031763\|Ga0318537_10079774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1204	Open in IMG/M
3300031763\|Ga0318537_10375571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300031765\|Ga0318554_10060182	All Organisms → cellular organisms → Bacteria → Proteobacteria	2091	Open in IMG/M
3300031771\|Ga0318546_10376233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	990	Open in IMG/M
3300031777\|Ga0318543_10010575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3208	Open in IMG/M
3300031780\|Ga0318508_1079756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	894	Open in IMG/M
3300031781\|Ga0318547_10439592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	803	Open in IMG/M
3300031799\|Ga0318565_10201861	All Organisms → cellular organisms → Bacteria → Proteobacteria	967	Open in IMG/M
3300031805\|Ga0318497_10120868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1418	Open in IMG/M
3300031819\|Ga0318568_10029230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3063	Open in IMG/M
3300031832\|Ga0318499_10093778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1157	Open in IMG/M
3300031833\|Ga0310917_11165701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	513	Open in IMG/M
3300031835\|Ga0318517_10223846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	849	Open in IMG/M
3300031835\|Ga0318517_10226437	Not Available	843	Open in IMG/M
3300031845\|Ga0318511_10211982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	863	Open in IMG/M
3300031879\|Ga0306919_10095001	All Organisms → cellular organisms → Bacteria → Proteobacteria	2085	Open in IMG/M
3300031894\|Ga0318522_10003111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4367	Open in IMG/M
3300031894\|Ga0318522_10113652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1009	Open in IMG/M
3300031897\|Ga0318520_10688313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	638	Open in IMG/M
3300031910\|Ga0306923_11798608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	629	Open in IMG/M
3300031941\|Ga0310912_10306617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1229	Open in IMG/M
3300031941\|Ga0310912_11087252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	611	Open in IMG/M
3300031946\|Ga0310910_10408333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1076	Open in IMG/M
3300031954\|Ga0306926_12533793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	562	Open in IMG/M
3300031959\|Ga0318530_10020611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2262	Open in IMG/M
3300032001\|Ga0306922_10555234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1220	Open in IMG/M
3300032001\|Ga0306922_10633270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1130	Open in IMG/M
3300032001\|Ga0306922_11768676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300032009\|Ga0318563_10132229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1333	Open in IMG/M
3300032010\|Ga0318569_10238480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	844	Open in IMG/M
3300032025\|Ga0318507_10067937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1440	Open in IMG/M
3300032025\|Ga0318507_10142131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1023	Open in IMG/M
3300032035\|Ga0310911_10622872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	626	Open in IMG/M
3300032039\|Ga0318559_10114265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1206	Open in IMG/M
3300032041\|Ga0318549_10017046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	2680	Open in IMG/M
3300032043\|Ga0318556_10019128	All Organisms → cellular organisms → Bacteria → Proteobacteria	3035	Open in IMG/M
3300032051\|Ga0318532_10260911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	615	Open in IMG/M
3300032052\|Ga0318506_10206216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	868	Open in IMG/M
3300032052\|Ga0318506_10505298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	536	Open in IMG/M
3300032064\|Ga0318510_10073110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1261	Open in IMG/M
3300032065\|Ga0318513_10453663	All Organisms → cellular organisms → Bacteria → Proteobacteria	627	Open in IMG/M
3300032065\|Ga0318513_10547521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	566	Open in IMG/M
3300032067\|Ga0318524_10625141	Not Available	567	Open in IMG/M
3300032068\|Ga0318553_10310136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	826	Open in IMG/M
3300032090\|Ga0318518_10130940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1267	Open in IMG/M
3300032205\|Ga0307472_101319128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	696	Open in IMG/M
3300032261\|Ga0306920_100659644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1544	Open in IMG/M
3300032261\|Ga0306920_103198046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Sediminicoccus → Sediminicoccus rosea	613	Open in IMG/M
3300033290\|Ga0318519_10009405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3928	Open in IMG/M
3300033290\|Ga0318519_10371155	Not Available	848	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.02%
Host-Associated	Host-Associated	5.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.31%
Plants	Host-Associated → Plants	5.13%
Aquatic	Environmental → Aquatic	1.71%
Arthropoda	Host-Associated → Arthropoda	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.13%
Freshwater	Environmental → Aquatic → Freshwater	0.85%
Sediment	Environmental → Aquatic → Sediment	0.85%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.62%
Loam	Environmental → Terrestrial → Soil → Loam	6.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.13%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.85%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	70.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.56%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.85%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	51.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.27%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.56%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.71%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.85%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.85%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010167	Labiotermes labralis P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P3	Host-Associated	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26339J46600_100863981	3300003218	Bog Forest Soil	MARHRAALRLAFATTLALVWGTMAGEPLPGLTAVLAAQILVGMPRPPRPGQAVALVAVMA
Ga0063455_1006130881	3300004153	Soil	MSPEAARHRAALRLAFAATLALGWGAMAGEPLPGLTAVLAAQTLVVMPRPPQLRQA
Ga0066398_100836832	3300004268	Tropical Forest Soil	MSPEMVGRRAALRLAFAATLALTWGTMAGEPLPGLTAVLAAQILVGMPRPPRPR
Ga0066395_107390351	3300004633	Tropical Forest Soil	MSPETTRQRAALRLAFAATLALIWGTMTGEPLPGLTAVLAAQILVAMPRPPRPGQAVALIVV
Ga0070690_1015158641	3300005330	Switchgrass Rhizosphere	MSPELARHRAVLRLALAATLALVWGVMAREPLPGLTAVLTAQILVAMPRPPRLVQAATLVAV
Ga0070671_1008922432	3300005355	Switchgrass Rhizosphere	MSPELARHRAVLRLPLAATLALVWGVMAREPLPGLTAVLTAQILVAMPRPPRPVQAAA
Ga0070710_102068901	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LSPELARHRAGLRLVFAATLALVWGTMAREPLPGLTAVLAAQILVGMPRPPGPGQAAAVLAVI
Ga0070699_1007583601	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSPETARHRAALRLAFAATLALFWGTMAGEPLPGLTAVLAAQILVGMPRPPRPGQAAALVAVI
Ga0070665_1022784451	3300005548	Switchgrass Rhizosphere	MSPELARHRAVLRLALAATLALVWGVMVREPLPGLTAVLTAQILVAMPRPPRPVQAAALVAVIAATGG
Ga0066702_106301491	3300005575	Soil	MSPETAPHRAALRLAVAATLALVWGAMAGEPLPGLTAVLAAQILVVMPRPPQLRQAVTLV
Ga0066654_108743692	3300005587	Soil	MSPETAPHRAALRLAFAATLALVWGAMAGEPLPGLTAVLAAQILVVMPRPPQLRQAVTLVSIIAVT
Ga0066903_1078238212	3300005764	Tropical Forest Soil	MARHRAALRLAFAATLALVWGTMASEPLPGLTAVLAAQILVGMPRPPRPGQAAALVVVIAATGG
Ga0075014_1008346251	3300006174	Watersheds	VLRLAFAATLALVWGTMAREPLPGLTAVLTAQVLIGLPRPPRPGQAAAVLAVIAATGGLTFAVA
Ga0126315_112393221	3300010038	Serpentine Soil	MARHRAVLRLAFAATLALVWGAISGEPLPGLTAVLATQILLSIPRPPRLRQAVTLVV
Ga0126312_105140161	3300010041	Serpentine Soil	MARQRAVLRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVGMPRPPQP
Ga0126310_102700822	3300010044	Serpentine Soil	MSPETARQRSALRLAFATTLALVWGTISGELLPGLTAVLAAQILVGTPRPPRL
Ga0123353_124105982	3300010167	Termite Gut	MARHRSALRLAFAVSEAMVCGTMVREPLPGLTAVLAAQILVGMPRPPRPRQAAALVAVIAATA
Ga0074044_108516941	3300010343	Bog Forest Soil	MARQQAALRLALAATLGLVWGTMAREPLPGLTAVLAAQILVGMPRPPRLGQAAALVAVIA
Ga0126370_115118532	3300010358	Tropical Forest Soil	MSPETARHRAALRLALAATAALVWSTVAAEPLPGLSAVLAAQILVGMSRPPR
Ga0126378_111152762	3300010361	Tropical Forest Soil	MARHRAALRLAFAATLALVWGTMAREPLPGLTAVLAAQVLVGMPRPPRPGQAATL
Ga0126378_115408421	3300010361	Tropical Forest Soil	LSREAARQRAALRLAFAATLALVWGTMAREPLPGLTAVLASQILVGMPRPPRPKQATAL
Ga0126378_130495441	3300010361	Tropical Forest Soil	MARHRSALRLAFAATVAMVWGTMVREPLPGLTAVLAAQILVGMPRPPRPRQAVALVAVIAATA
Ga0126379_100099891	3300010366	Tropical Forest Soil	MARHRAALRLAFGPTLALVWGTIAGEPLPGLAAVLVAQILVGMPRPPRLGQA
Ga0126381_1031704652	3300010376	Tropical Forest Soil	MARHRAVLRLTFAATLALVWGTMAREPLPGLTAVLTAQLLVGMPRPPRLGQAAALVAVIAGTGGVTFAVGA
Ga0126369_102627991	3300012971	Tropical Forest Soil	MARHRAALRLAFGPTLALVWGTIAGEPLPGLAAVLVAQILVGMPRPPRL
Ga0126369_105582651	3300012971	Tropical Forest Soil	MARHRAVLRLAVAAAATLALVWGTMAGELLPGLTAVPAAQILVGMPRPPRPSQAAAPVAVNRGRGRRSLRC
Ga0126369_115046832	3300012971	Tropical Forest Soil	MARHRATLRLGFAATLALVWGTMAGEPLPGLTAVLAAQILVGMPRPPRPGQAAALVLVIATTGGAAYAVAA
Ga0132256_1022396722	3300015372	Arabidopsis Rhizosphere	MSPEAVRHRTALRLAFATTLALIWGTMASEPLPRLTAVITAQILAGLPGPPRPRQAVTMVAIIAFTGGAAFAVSM
Ga0182036_108069621	3300016270	Soil	EMARHRSALRLAFAATVAMVWGTMVREPLPGLTAVLTAQILVGMPGPPRPRQERRWSP
Ga0182041_120400271	3300016294	Soil	MSPDTARHRAALRLAFAATLAMVWGTTVREPLPGLTAVLTAQILVGMPRPPRPRQAAAL
Ga0182033_120306112	3300016319	Soil	MARHRSALRLAFAATVAMVWGTMAREPLPGLTAVLTAQILVGMPRPPRPRQ
Ga0182035_106450602	3300016341	Soil	MARHRSALRLAFAATVAMVWGTMAREPLPGLTAVLTAQILVGMPRPPRPRQAAALVAVIAITGG
Ga0182034_105410571	3300016371	Soil	MSPERARHRATLRLALAATLALVWGTMAGEPLPGLTAVLVAQILVGMPRPPRPGQAAA
Ga0182034_110488741	3300016371	Soil	MARHRAALRLAFAATLALVWGTMAREPLPGLTAVLVAQLLVGMPRPPRLGQAAALVAVIAGTGGVTFA
Ga0182040_119222511	3300016387	Soil	MSPETARHRAALRLAFAATLAIVWGTMVREPLPGLTAVLAAQILVGMPRPPRPGQAAALVVVIAITGGAAFAITSAF
Ga0182038_103765852	3300016445	Soil	MARHRSALRLAFAAAVAMVWGTMVREPLPGLTAVLTAQILVGMPRP
Ga0182038_110221971	3300016445	Soil	MARHRSALRLAFAATVAMVWGTMAREPLPGLTAVLTAQILVGMPRPPRPRQAAAL
Ga0182038_112303192	3300016445	Soil	MLRLAFAATLALIWGTLAGEPLPGLTAALAAQILVGMPRPPRPGQAAALIVVIAA
Ga0066655_102786561	3300018431	Grasslands Soil	MSPETAPHRPALRLALAATLALVWGAMAGEPLPGLTAVLAAQILVVMPRPPQLRQAVTLVSIIALTGLAAFAVAVAFADRLPMLMPALGLLFF
Ga0126371_121915412	3300021560	Tropical Forest Soil	LSPETARHRSALRLAFAATVAMVWGTMVREPLPGLTAVLAAQILVGMPRPPR
Ga0207681_110832701	3300025923	Switchgrass Rhizosphere	MSPEAARHRRALRLAFATTLALVWGTLAGEPLPGLTAVLAAQILVALPRPP
Ga0207644_101506061	3300025931	Switchgrass Rhizosphere	VLRLALAATLALVWGVTAREPLPGLTAVLTAQILVAMPRPPRPVQAAALVAV
Ga0207644_107925552	3300025931	Switchgrass Rhizosphere	MSPELARHRAVLRLALAATLALVWGVMAREPLPGLTAVLTAQILVAMPRPPRPVQAAALVAV
Ga0207661_116759771	3300025944	Corn Rhizosphere	MSPELARHRAVLRLALAATLALVWGVMAREPLPGLTAVLTAQILVAMPRPPRPVQAAALVAVIAATGA
Ga0318538_101780002	3300031546	Soil	MSPETARHRAALRLAFAATLAMVWGTMVREPLPGLTAVLAAQILVGMPR
Ga0318538_105241571	3300031546	Soil	MSPDTARHRAALRLAFAATLAMVWGTTVREPLPGLTAVLAAQILVGMPGQRLPD
Ga0318528_106775001	3300031561	Soil	MSLETARHRAVLRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVGMPRPPRLGQAAALVVVIAGTSGAAFA
Ga0318515_105775501	3300031572	Soil	LSPEIARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVGLPRPPRLG
Ga0318515_106072341	3300031572	Soil	MSPERARHRATLRLALAATLALVWGTMAGEPLPGLTAVLVAQILVGMPRPP
Ga0318515_107408021	3300031572	Soil	MSPEMARHRSALRLAFAATLGLVWGTMAREPLPGLTAVLVAQILVGMPRPPRPGQAAALVLV
Ga0318515_107506402	3300031572	Soil	MSPEMARHRAALRLAFAATLALVWGTMAREPLPGLTAVVAAQILVATPRPPRPRQAVALVAVIAATGG
Ga0310915_106266711	3300031573	Soil	MSPETARHRAALRLAFAATLAIVWGTMVREPLPGLTAVLAAQILVGMPRPPRPGQAAALVVVIAITGGAAFAIT
Ga0318555_105503872	3300031640	Soil	MARQRAALRLAFAATLALVWGTMAGEPLPGLAAVLTAQILVGMPRPPRPGQAAAGAC
Ga0318561_102767342	3300031679	Soil	MSPETARHRAALRLAFAATLAMVWGTMVREPLPGLTAVLAAQILVGMPRPPRPAQAAALVVVIAITGGAAFA
Ga0318560_100813741	3300031682	Soil	LSPEIARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVGLPRPPRLGQAAALVLV
Ga0318496_104578131	3300031713	Soil	MARHRSALRLAFAATVAMVWGTMAREPLPGLTAVLTAQILVGMPRPPR
Ga0306917_101251452	3300031719	Soil	MARQRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVGMPRPPRL
Ga0318500_101756322	3300031724	Soil	LSPEIARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVGLPRPSRTGW
Ga0318500_103900142	3300031724	Soil	MSPETARHRAALRLAFAATLAIVWGTMVREPLPGLTAVLAAQILVGMPRPPRPGQAAALVVVIAITGGAAFAITSAFSDRLLMLTVA
Ga0307468_1021966561	3300031740	Hardwood Forest Soil	MSPEAVRHRTALRLAFATTLALIWGTMASEPLPGLTAVITAQILAGLPGPPRPRQAVTMVAIIALTGGAAFAVSMVF
Ga0306918_104228951	3300031744	Soil	MARHRSALRLAFAATVAMVWGTMVREPLPGLTAVLTAQILVGMPRPPRPRQAAAL
Ga0318492_102659531	3300031748	Soil	MARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLTAQILVGMPRPPRLGQ
Ga0318492_104552962	3300031748	Soil	MSPETARHRAALRLALAATLALVWGTMAGAHLPGLTAVLAAQILVGMPRPPRPGHA
Ga0307475_110633182	3300031754	Hardwood Forest Soil	MSPETARHRAGLRLAFAATLALVWGTMGGEPLPGLTAVLAAQILVAMPRPPRPGQAVALVAVIAGTGGA
Ga0318537_100226341	3300031763	Soil	MSPERARHRATLRLALAATLALVWGTMAGEPLPGLTAVLVAQILVGMPRPPRPGQAAALVVVIAATGGAAYA
Ga0318537_100516382	3300031763	Soil	MSPEMARQRAALRLALAATLALVWGTMAGEPLPGLTAVLAAQILVGMPRPPRLGQA
Ga0318537_100797742	3300031763	Soil	LSPESARQRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVGMPGPPRLGQA
Ga0318537_103755712	3300031763	Soil	MARHRSALRLAFAATVAMVWGTMAREPLPGLTAVLTAQILVGMPRPPRP
Ga0318554_100601821	3300031765	Soil	MSPETARHRAALRLAFAATLAMVWGTMVREPLPGLTAVLAAQILVGMPRPPLE
Ga0318546_103762331	3300031771	Soil	MARQRAALRLAFAATLALVWGMMVGEPLPGLTAVLAAQILVGMPRPPRPGQAAALVVV
Ga0318543_100105751	3300031777	Soil	MSPEMARHRAALRLAFAATLALVWGTMAREPLPGLTAVVAAQILVATPRP
Ga0318508_10797561	3300031780	Soil	MSPEMARHRAALRLAFAATLALVWGTMAREPLPGLTAVVAAQILVATPRPPRPRQAVAL
Ga0318547_104395922	3300031781	Soil	MSPEMARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQVLVGMPRAPRPGQAAALVVV
Ga0318565_102018612	3300031799	Soil	MSPETARHRAALRLAFAATLAMVWGTMVREPLPGLTAVLAAQILVGMPRPPRPAQAAALVVVIAITGGAAFAITSV
Ga0318497_101208681	3300031805	Soil	MARQRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVGMPRPPRLGQAV
Ga0318568_100292303	3300031819	Soil	MSPEMARHRAALRLAFAATLALVWGTMAREPLPGLTAVVAAQILVATPRPPRPRQAVALVAVIAATGGAVF
Ga0318499_100937782	3300031832	Soil	MARHRSALRLAFAATVAMVWGTMVREPLPGLTAVLTAQILVGMPRPPRPRQAAALV
Ga0310917_111657011	3300031833	Soil	MERHRSALRLAFAATVAMVWGTMAREPLPGLTAVLTAQILVGMPRPPRPRQAA
Ga0318517_102238461	3300031835	Soil	MARHRSALRLAFAATVAMVWGTMAREPLPGLTAVLTAQILVGMPRPPRPRQAAALVAVIAITGGA
Ga0318517_102264371	3300031835	Soil	MSPDTARHRAALRLAFAATLAMVWGTTVREPLPGLTAVLAAQILVGMPGQRLPDRRAPD
Ga0318511_102119822	3300031845	Soil	MARQRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVGMPRPPRLGQAVVLVAMVA
Ga0318512_102718852	3300031846	Soil	MSPEMARHRSALRLAFAATLGLVWGTMAREPLPGLTAVLVAQILVGMPRPPRPGQAAALVLVIAATSGAAYAVAATFADRLLMLT
Ga0306919_100950014	3300031879	Soil	MSPETARHRAALRLAFAATLAIVWGTMVREPLPGLTAVLAAQILVGMPRPPRPGQAAALVVVIAIT
Ga0318522_100031114	3300031894	Soil	MSPEMARHRAALRLAFAATLALVWGTMAREPLPGLTAVVAAQILVATPRPRRPRQAVALVAVIAATGG
Ga0318522_101136522	3300031894	Soil	MSPETARHRAALRLAFAATLAMVWGTMVREPLPGLTAVLAAQILVGMPRPPRG
Ga0318520_106883132	3300031897	Soil	MSPEMARHRSALRLAFAATLGLVWGTMAREPLPGLTAVLVAQILVGMPRPPRPGQAAALVLVIAATSGAAY
Ga0306923_117986081	3300031910	Soil	MSPEMARHRAALRLAFAATLALVWGTMAREPLPGLTAVLAAQILVGIPRPP
Ga0310912_103066172	3300031941	Soil	MARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQVLVGMPRAPRPGQAAALV
Ga0310912_110872521	3300031941	Soil	ALRLAVAATVAMVWGTMAREPLPGLTAVLTAQILVGMPGPPRPRQERRWSP
Ga0310910_104083331	3300031946	Soil	MARQRAALRLALAATLALVWGTMAGEPLPGLTAVLAAQILVGMPRPPR
Ga0306926_125337931	3300031954	Soil	MARHRSALRLAFAAAVAMVWGTMVREPLPGLTAVLTAQILVGMPRPPRPRQAAALVAVIAIT
Ga0318530_100206111	3300031959	Soil	MARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQVLVGMPRAPRPGQAAALVVVIAATGG
Ga0306922_105552341	3300032001	Soil	MARHRSALRLAFAATVAMVWGTMVREPLPGLTAVLTAQILVGMPRPPRPRQAAALVAVIA
Ga0306922_106332701	3300032001	Soil	LSPEIARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVGLPRPPRLGQAAALV
Ga0306922_117686761	3300032001	Soil	MARQRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVGMPRPPR
Ga0318563_101322292	3300032009	Soil	MSPERARHRATLRLALAATLALVWGTMAGEPLPGLTAVLVAQILVGMPRPPRPGQAAALVVV
Ga0318569_102384801	3300032010	Soil	MSPEMARHRAALRLAFAATLALVWGTMAREPLPGLTAVVAAQILVATPRPPRPRQ
Ga0318507_100679371	3300032025	Soil	MARQRAALRLALAATLALVWGTMAGEPLPGLTAVLAAQILVGMPRPPRLGQAVVL
Ga0318507_101421312	3300032025	Soil	MARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLTAQILVGMPRPPRLGQAS
Ga0310911_106228721	3300032035	Soil	MARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVGLPRPPRLGQAAALVL
Ga0318559_101142653	3300032039	Soil	LSPEIARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVAMPRPPRPGQAAALVLVIAATGGV
Ga0318549_100170462	3300032041	Soil	MERHRSALRLAVAATVAMVWGTMAREPLPGLTAVLTAQILVGMPGPPRPRQERRWSP
Ga0318556_100191285	3300032043	Soil	MSPDTARHRAALRLAFAATLAMVWGTTVREPLPGLTAVLAAQILVGMPGPPRPRQERRWS
Ga0318532_102609111	3300032051	Soil	MSPEMARHRSALRLAFAATLGLVWGTMAREPLPGLTAVLVAQILVGMPRPPRPGQAAALV
Ga0318506_102062162	3300032052	Soil	MARHRSALRLAFAATVAMVWGTMAREPLPGLTAVLTAQILVGMPGPPRPRQERRWSP
Ga0318506_105052982	3300032052	Soil	MARQRAALRLAFAATLALVWGTMAGEPLPGLAAVLTAQILVGMPRPPRPGQAAALV
Ga0318510_100731102	3300032064	Soil	MARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQVLVGMPRAPRPGQAAALVVVIA
Ga0318513_104536631	3300032065	Soil	LSPEIARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVAMPRPP
Ga0318513_105475212	3300032065	Soil	MSPDTARHRAALRLAFAATLAMVWGTTVREPLPGLTAVLAAQILVGMPGPPRPRQAAALVAVIAATA
Ga0318524_106251412	3300032067	Soil	MARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVGTPGPPRPR
Ga0318553_103101361	3300032068	Soil	MARHRSALRLAFAATVAMVWGTMAREPLPGLTAVLTAQILVGMPRPLRPRQAAALVAV
Ga0318518_101309401	3300032090	Soil	MARHRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQVLVGMPRAPR
Ga0307472_1013191281	3300032205	Hardwood Forest Soil	MSPDSAQQRAALRLAFAATLALVWGTMAGEPLPGLTAVLAAQILVVLAGPPRP
Ga0306920_1006596441	3300032261	Soil	MARHRSALRLAFAATVAMVWGTMAREPLPGLTAVLTAQILVGMPRPPRPRQAAALVAV
Ga0306920_1031980462	3300032261	Soil	MALHRAALRLAFVATLALVWGTMAREPLPGLTAVLAAQILVGMPRSPRPGQAAALVLVIAATGGAAYA
Ga0318519_100094054	3300033290	Soil	MSPEMARHRAALRLAFAATLALVWGTMAREPLPGLTAVVAAQILVATPRPRQAVAL
Ga0318519_103711552	3300033290	Soil	MSPETARHRAALRLAFAATLAIVWGTMVREPLPGLTAVLAAQILVGMPRPPRPGQAAALV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077620

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences