Metagenome / Metatranscriptome Family F077618

Basic Information
Family ID	F077618
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	42 residues
Representative Sequence	DDPKTFSKPWTFTTHPSLLRGELIEYICQENNKDVEHLVGK
Number of Associated Samples	104
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.71 %
% of genes near scaffold ends (potentially truncated)	97.44 %
% of genes from short scaffolds (< 2000 bps)	94.02 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Most Common Taxonomy
Group	Bacteria (92.308 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (8.547 % of family members)
Environment Ontology (ENVO)	Unclassified (29.060 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.154 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.35% β-sheet: 26.09% Coil/Unstructured: 69.57%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF13620	CarboxypepD_reg	14.53
PF07883	Cupin_2	4.27
PF05368	NmrA	2.56
PF01436	NHL	2.56
PF01594	AI-2E_transport	2.56
PF00285	Citrate_synt	2.56
PF13577	SnoaL_4	2.56
PF01475	FUR	1.71
PF04075	F420H2_quin_red	1.71
PF12796	Ank_2	1.71
PF00266	Aminotran_5	1.71
PF01571	GCV_T	1.71
PF12543	DUF3738	1.71
PF00126	HTH_1	1.71
PF07729	FCD	0.85
PF00501	AMP-binding	0.85
PF00456	Transketolase_N	0.85
PF13637	Ank_4	0.85
PF13857	Ank_5	0.85
PF15780	ASH	0.85
PF00111	Fer2	0.85
PF08327	AHSA1	0.85
PF05163	DinB	0.85
PF11453	DUF2950	0.85
PF09286	Pro-kuma_activ	0.85
PF00529	CusB_dom_1	0.85
PF13487	HD_5	0.85
PF04253	TFR_dimer	0.85
PF02641	DUF190	0.85
PF07519	Tannase	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0372	Citrate synthase	Energy production and conversion [C]	2.56
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	2.56
COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	Inorganic ion transport and metabolism [P]	1.71
COG0021	Transketolase	Carbohydrate transport and metabolism [G]	0.85
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.85
COG1993	PII-like signaling protein	Signal transduction mechanisms [T]	0.85
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.85
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.85
COG3959	Transketolase, N-terminal subunit	Carbohydrate transport and metabolism [G]	0.85
COG4934	Serine protease, subtilase family	Posttranslational modification, protein turnover, chaperones [O]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	57.26 %
Unclassified	root	N/A	7.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.27 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	2.56 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	17.09 %
Unclassified	root	N/A	7.69 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.13 %
uncultured bacterium BAC10-10	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BAC10-10	2.56 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.71 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.09 %
Unclassified	root	N/A	7.69 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.42 %
uncultured bacterium BAC10-10	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BAC10-10	2.56 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.71 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.85 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.85 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.85 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.09 %
Unclassified	root	N/A	7.69 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.42 %
uncultured bacterium BAC10-10	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BAC10-10	2.56 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.71 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.85 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.85 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.85 %
Dehalogenimonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.09 %
Unclassified	root	N/A	7.69 %
uncultured bacterium BAC10-10	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BAC10-10	2.56 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	1.71 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.85 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.85 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.85 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.85 %
Dehalogenimonas alkenigignens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas → Dehalogenimonas alkenigignens	0.85 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.09 %
Unclassified	root	N/A	7.69 %
uncultured bacterium BAC10-10	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BAC10-10	2.56 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	1.71 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.85 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.85 %
Terriglobus roseus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	0.85 %
Granulicella paludicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella paludicola	0.85 %
Dehalogenimonas alkenigignens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas → Dehalogenimonas alkenigignens	0.85 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.09 %
Unclassified	root	N/A	7.69 %
uncultured bacterium BAC10-10	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BAC10-10	2.56 %
Archangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium	1.71 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.85 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.85 %
Terriglobus roseus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	0.85 %
Granulicella paludicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella paludicola	0.85 %
Dehalogenimonas alkenigignens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas → Dehalogenimonas alkenigignens	0.85 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.09 %
Unclassified	root	N/A	7.69 %
uncultured bacterium BAC10-10	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BAC10-10	2.56 %
Archangium gephyra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium gephyra	1.71 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.85 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.85 %
Terriglobus roseus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	0.85 %
Granulicella paludicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella paludicola	0.85 %
Dehalogenimonas alkenigignens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas → Dehalogenimonas alkenigignens	0.85 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459006\|GBPF9FW01EZNKL	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
2228664022\|INPgaii200_c0737947	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300000559\|F14TC_100564420	All Organisms → cellular organisms → Bacteria → Acidobacteria	1848	Open in IMG/M
3300004121\|Ga0058882_1447254	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300005172\|Ga0066683_10375743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	880	Open in IMG/M
3300005339\|Ga0070660_101204086	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300005434\|Ga0070709_10048530	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2650	Open in IMG/M
3300005534\|Ga0070735_10852270	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300005536\|Ga0070697_101681602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300005538\|Ga0070731_10194513	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300005541\|Ga0070733_10447159	All Organisms → cellular organisms → Bacteria → Acidobacteria	862	Open in IMG/M
3300005615\|Ga0070702_100561676	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300005615\|Ga0070702_100624246	All Organisms → cellular organisms → Bacteria → Acidobacteria	811	Open in IMG/M
3300005764\|Ga0066903_102734439	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957	Open in IMG/M
3300005764\|Ga0066903_103865802	All Organisms → cellular organisms → Bacteria → Acidobacteria	804	Open in IMG/M
3300005834\|Ga0068851_11034861	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella paludicola	519	Open in IMG/M
3300006028\|Ga0070717_11873490	Not Available	541	Open in IMG/M
3300006031\|Ga0066651_10292557	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300006034\|Ga0066656_11041658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300006174\|Ga0075014_100887010	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300006797\|Ga0066659_10227441	All Organisms → cellular organisms → Bacteria → Acidobacteria	1382	Open in IMG/M
3300009012\|Ga0066710_101805796	Not Available	923	Open in IMG/M
3300009093\|Ga0105240_10787627	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1031	Open in IMG/M
3300009148\|Ga0105243_11642906	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300009176\|Ga0105242_10477375	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300009824\|Ga0116219_10675263	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300010043\|Ga0126380_11571834	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium gephyra	586	Open in IMG/M
3300010109\|Ga0127497_1144777	All Organisms → cellular organisms → Bacteria → Acidobacteria	712	Open in IMG/M
3300010362\|Ga0126377_13070662	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium gephyra	539	Open in IMG/M
3300010376\|Ga0126381_100159754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2970	Open in IMG/M
3300010376\|Ga0126381_100527926	All Organisms → cellular organisms → Bacteria	1669	Open in IMG/M
3300010376\|Ga0126381_104324332	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300010379\|Ga0136449_101353464	All Organisms → cellular organisms → Bacteria → Acidobacteria	1104	Open in IMG/M
3300010398\|Ga0126383_10375040	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BAC10-10	1452	Open in IMG/M
3300010398\|Ga0126383_10403365	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1405	Open in IMG/M
3300010398\|Ga0126383_11047013	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BAC10-10	905	Open in IMG/M
3300011120\|Ga0150983_14382456	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300012198\|Ga0137364_10497471	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300012202\|Ga0137363_11397889	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300012211\|Ga0137377_10095786	All Organisms → cellular organisms → Bacteria → Acidobacteria	2806	Open in IMG/M
3300012212\|Ga0150985_113839327	All Organisms → cellular organisms → Bacteria → Acidobacteria	780	Open in IMG/M
3300012398\|Ga0134051_1119681	All Organisms → cellular organisms → Bacteria → Acidobacteria	805	Open in IMG/M
3300012469\|Ga0150984_103231989	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300012469\|Ga0150984_108286531	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300012469\|Ga0150984_117008773	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300012685\|Ga0137397_10193792	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BAC10-10	1511	Open in IMG/M
3300012930\|Ga0137407_12130430	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
3300012944\|Ga0137410_11477100	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300013102\|Ga0157371_11010001	All Organisms → cellular organisms → Bacteria → Acidobacteria	635	Open in IMG/M
3300013104\|Ga0157370_10841925	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300013308\|Ga0157375_12472940	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	620	Open in IMG/M
3300014150\|Ga0134081_10153237	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300014159\|Ga0181530_10609070	Not Available	534	Open in IMG/M
3300014262\|Ga0075301_1129383	Not Available	571	Open in IMG/M
3300014325\|Ga0163163_11453044	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300014489\|Ga0182018_10401613	All Organisms → cellular organisms → Bacteria → Acidobacteria	733	Open in IMG/M
3300014657\|Ga0181522_11030425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas → Dehalogenimonas alkenigignens	510	Open in IMG/M
3300014838\|Ga0182030_10082936	All Organisms → cellular organisms → Bacteria	4608	Open in IMG/M
3300014969\|Ga0157376_10981398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	866	Open in IMG/M
3300015372\|Ga0132256_102802811	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300016422\|Ga0182039_10790635	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300016445\|Ga0182038_11428052	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300017659\|Ga0134083_10024858	All Organisms → cellular organisms → Bacteria → Acidobacteria	2146	Open in IMG/M
3300017659\|Ga0134083_10137132	All Organisms → cellular organisms → Bacteria → Acidobacteria	984	Open in IMG/M
3300018003\|Ga0187876_1216822	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300018022\|Ga0187864_10016061	All Organisms → cellular organisms → Bacteria	4782	Open in IMG/M
3300021405\|Ga0210387_11270326	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	637	Open in IMG/M
3300021420\|Ga0210394_11536101	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300021477\|Ga0210398_11493631	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300021560\|Ga0126371_12847228	All Organisms → cellular organisms → Bacteria → Acidobacteria	586	Open in IMG/M
3300022498\|Ga0242644_1033270	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	562	Open in IMG/M
3300022722\|Ga0242657_1160973	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	598	Open in IMG/M
3300022724\|Ga0242665_10314940	Not Available	551	Open in IMG/M
3300025899\|Ga0207642_10715448	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300025906\|Ga0207699_10280580	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1157	Open in IMG/M
3300025906\|Ga0207699_11246356	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300025911\|Ga0207654_11257361	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300025912\|Ga0207707_10393350	Not Available	1191	Open in IMG/M
3300025913\|Ga0207695_10681729	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	908	Open in IMG/M
3300025919\|Ga0207657_10301901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1268	Open in IMG/M
3300025919\|Ga0207657_11426330	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300025924\|Ga0207694_11463224	All Organisms → cellular organisms → Bacteria → Acidobacteria	577	Open in IMG/M
3300025928\|Ga0207700_11946918	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300025941\|Ga0207711_10615656	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300025942\|Ga0207689_11738662	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300026023\|Ga0207677_11643931	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300026035\|Ga0207703_10679685	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300026142\|Ga0207698_10188583	All Organisms → cellular organisms → Bacteria → Acidobacteria	1834	Open in IMG/M
3300026550\|Ga0209474_10375331	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
3300027641\|Ga0208827_1131844	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300027648\|Ga0209420_1167111	All Organisms → cellular organisms → Bacteria → Acidobacteria	597	Open in IMG/M
3300027669\|Ga0208981_1111385	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300027853\|Ga0209274_10755719	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300027867\|Ga0209167_10829012	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300027879\|Ga0209169_10005534	All Organisms → cellular organisms → Bacteria → Proteobacteria	7284	Open in IMG/M
3300027895\|Ga0209624_10223104	All Organisms → cellular organisms → Bacteria → Acidobacteria	1253	Open in IMG/M
3300028381\|Ga0268264_10308521	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1492	Open in IMG/M
3300029951\|Ga0311371_10645164	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
3300030805\|Ga0265756_112892	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300031226\|Ga0307497_10103408	All Organisms → cellular organisms → Bacteria	1114	Open in IMG/M
3300031708\|Ga0310686_101178158	All Organisms → cellular organisms → Bacteria → Proteobacteria	1177	Open in IMG/M
3300031712\|Ga0265342_10186661	All Organisms → cellular organisms → Bacteria → Acidobacteria	1133	Open in IMG/M
3300031820\|Ga0307473_10244745	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1096	Open in IMG/M
3300031820\|Ga0307473_10585178	All Organisms → cellular organisms → Bacteria → Acidobacteria	768	Open in IMG/M
3300031823\|Ga0307478_11319152	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300031912\|Ga0306921_11837787	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	650	Open in IMG/M
3300031912\|Ga0306921_12470481	Not Available	540	Open in IMG/M
3300031938\|Ga0308175_102025461	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300031939\|Ga0308174_11206402	Not Available	645	Open in IMG/M
3300031945\|Ga0310913_11150956	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300031947\|Ga0310909_10350008	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	1240	Open in IMG/M
3300031954\|Ga0306926_12910397	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300032039\|Ga0318559_10353970	Not Available	683	Open in IMG/M
3300032066\|Ga0318514_10791024	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300032160\|Ga0311301_10990184	All Organisms → cellular organisms → Bacteria → Acidobacteria	1114	Open in IMG/M
3300032829\|Ga0335070_10241670	All Organisms → cellular organisms → Bacteria → Acidobacteria	1775	Open in IMG/M
3300032955\|Ga0335076_11217283	All Organisms → cellular organisms → Bacteria → Acidobacteria	637	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.07%
Host-Associated	Host-Associated	23.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.79%
Plants	Host-Associated → Plants	23.93%
Aquatic	Environmental → Aquatic	4.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.24%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.84%
Freshwater	Environmental → Aquatic → Freshwater	3.42%
Sediment	Environmental → Aquatic → Sediment	0.85%
Peat	Environmental → Terrestrial → Peat	0.85%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.43%
Loam	Environmental → Terrestrial → Soil → Loam	16.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.40%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.27%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.56%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.71%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.13%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.27%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.42%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.56%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.56%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.56%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.56%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.71%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.71%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.85%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.85%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.85%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.85%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.85%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300004121	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010109	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012398	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014262	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022498	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030805	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077618

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L01_02833490	2170459006	Grass Soil	VHIIDDPKTFSRPWSFTTKPTLLRGELIEYICQENNKDVEHLVGK
INPgaii200_07379472	2228664022	Soil	TIDDPKTFSKPWKFTTHPVLLRGELIEYICQENNKDVQHLVGK
F14TC_1005644201	3300000559	Soil	IIDDPKTFSKPWTFTTQPSLLRGELIEYICQENNKDVEHLVGK*
Ga0058882_14472541	3300004121	Forest Soil	PKAYTKPWKFTIHPMLLDGELMEYICQENNVDMKHLVGK*
Ga0066683_103757431	3300005172	Soil	DDPKTFSKPWTFTTHPSLLRGELIEYICQENNKDVEHLVGK*
Ga0070660_1012040862	3300005339	Corn Rhizosphere	QIEHTIDDPKTFSRPWSFTTHPSLLKGELIEYICQENNKDVEHLVGK*
Ga0070709_100485301	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	PKTFSKPWKFTTHPVLLRGELIEYICQENNRDVQHLVGK*
Ga0070735_108522701	3300005534	Surface Soil	LTIVHTIDDPKTFSKPWSFTTHPSLLKGELIEYICQENNKDVQHLVGK*
Ga0070697_1016816022	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	PKTFSKPWTFTTHPSLLRGELIEYICQENNKDVEHLIGK*
Ga0070731_101945131	3300005538	Surface Soil	KPWSFTTHPSLLKGELIEYICQENNRDVQHLVGK*
Ga0070733_104471593	3300005541	Surface Soil	EHTIDDPKTFSKPWKFTTHPSMLKGELIEYICQENNRDVQHLVGK*
Ga0070702_1005616762	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	ERMTRTDLGHMEIVHIIEDPKTFSRTWTFTTKPTLLKGELIEYICQENNKDVEHLVGK*
Ga0070702_1006242462	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	IEHTIDDPKMFSKPWKFTTHPTLLRGELIEYICQENNKDVQHLVGK*
Ga0066903_1027344392	3300005764	Tropical Forest Soil	KSYSKPRKFTTLPVMWRGELMEYIRQENNRDVERLVGKSK*
Ga0066903_1038658021	3300005764	Tropical Forest Soil	IVHTIDDPKTFSRPWTFTTKPSMLKGELIEYICQENNKDVEHLIGK*
Ga0068851_110348611	3300005834	Corn Rhizosphere	PKTFSKPWKFTTHPSLLRGELIEYICQENNKDVQHMVGK*
Ga0070717_118734902	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	IDDPKTFSKPWSFTTHPSLLKGELIEYICQENNRDVQHLVGPGK*
Ga0066651_102925573	3300006031	Soil	KTFSRPWTFTTKPTLLKGELIEYICQENNKDVEHLVGK*
Ga0066656_110416581	3300006034	Soil	IIDDPKTFSKPWTFTTHPSLLRGELIEYICQENNKDVEHLVGK*
Ga0075014_1008870102	3300006174	Watersheds	HTVNDPGAYSKPWTFTTHPTLLNGELIEYICQENNRDVEHLKGK*
Ga0066659_102274411	3300006797	Soil	EARIEDPKTFSRPWTFTTKPTLLKGELIEYICQENNKDVEHLVGK*
Ga0066710_1018057961	3300009012	Grasslands Soil	IEDPKMFSRTWTFTTKPTLLKGELIEYICQENNKDVEHLVGK
Ga0105240_107876271	3300009093	Corn Rhizosphere	HTIEDPKTFSKPWKFTTHPTLLRGELIEYICQENNKDVQHLVGK*
Ga0105243_116429061	3300009148	Miscanthus Rhizosphere	KPWNFTIRPILLDGELMEYICQENNLDVKHLVGK*
Ga0105242_104773751	3300009176	Miscanthus Rhizosphere	IIEDPKTFSRTWTFTTKPTLLKGELIEYICQENNKDVEHLVGK*
Ga0116219_106752631	3300009824	Peatlands Soil	PKTFSKPWKFITHPSLLKGELIEYICQENNRDVQHLVGK*
Ga0126380_115718342	3300010043	Tropical Forest Soil	FGHMEIVHIIDDPKTFSRQWTFTTHPTLLKGELIEYICQENNRDVEHLVGK*
Ga0127497_11447771	3300010109	Grasslands Soil	HLEVVHIIDDPKTFSKLWTFTTHPSLLRGELIEYICQENNKDVEHLVGK*
Ga0126377_130706621	3300010362	Tropical Forest Soil	DLGHMEIVHIIDDPKTFSRQWTFTTHPTLLKGELIEYICQENNKDVDHLVGK*
Ga0126381_1001597541	3300010376	Tropical Forest Soil	IEHIIDDPKTFSKPWSFTTHPSLLKGELIEYICQENNRDVDHLVGK*
Ga0126381_1005279261	3300010376	Tropical Forest Soil	IEHIIEDPKTFSKPWSFTTHPSLLKGELIEYICQENNKDVPHLVGK*
Ga0126381_1043243322	3300010376	Tropical Forest Soil	GHLTIEHIINDPKTFSKPWSFTTHPSLLKGELIEYICQENNKDVQHLVGK*
Ga0136449_1013534642	3300010379	Peatlands Soil	GAYTAPWNFTTHPRILRGEMIEYICQENNRDVEHLVGSGK*
Ga0126383_103750403	3300010398	Tropical Forest Soil	FSRQWTFTTHPTLLKGELIEYICQENNRDVEHLVGK*
Ga0126383_104033651	3300010398	Tropical Forest Soil	TKPWTFTTHPTLLKGELIEYICQENNRDVEHLFGK*
Ga0126383_110470132	3300010398	Tropical Forest Soil	SRTWTFTTKPTLLKGELIEYICQENNKDVDHLVGK*
Ga0150983_143824562	3300011120	Forest Soil	DDPKAFWKPWTFTPPPSFLKGELIEYICQEENKDVDHLVGK*
Ga0137364_104974711	3300012198	Vadose Zone Soil	EDPKTFSRSWTFTTKPTLLKGELIEYICQENNKDVEHLVGK*
Ga0137363_113978892	3300012202	Vadose Zone Soil	IFSKPWRFTTHPSLLKGELIEYICQENNKDVEHLIGK*
Ga0137377_100957861	3300012211	Vadose Zone Soil	TFSKPWTFTTHPSLLRGELIEYICQENNKDVEHLVGK*
Ga0150985_1138393272	3300012212	Avena Fatua Rhizosphere	SKTFSKPWSFTTHPSLLQGELIEYICQENNKDIEHLIGK*
Ga0134051_11196813	3300012398	Grasslands Soil	SKLWTFTTHPSLLRGELIEYICQENNKDVEHLVGK*
Ga0150984_1032319891	3300012469	Avena Fatua Rhizosphere	IVHIIEDPKTFSRPWTFTTKPTLLKGELIEYICQENNKDVEHLVGK*
Ga0150984_1082865312	3300012469	Avena Fatua Rhizosphere	VHIIEDPKTFSRPWTFTTKPTLLKGELIEYICQENNKDVEHLVGK*
Ga0150984_1170087731	3300012469	Avena Fatua Rhizosphere	PKTFSRPWTFTTKPTLLKGELIEYICQENNKDVEHLVGK*
Ga0137397_101937922	3300012685	Vadose Zone Soil	IEDPKMFSRTWTFTTKPTLLKGELIEYICQENNKDVEHLVGK*
Ga0137407_121304301	3300012930	Vadose Zone Soil	DPKTFSKPWKFTTHPTLLRGELIEYICQENNKDVQHLVGK*
Ga0137410_114771002	3300012944	Vadose Zone Soil	EIEHTIDDPKTFSRTWSFTTKPSLLQGELIEYICQENNKDIEHLVGK*
Ga0157371_110100011	3300013102	Corn Rhizosphere	EHTIDDPKMFSKPWKFTTHPTLLRGELIEYICQENNKDVQHLVGK*
Ga0157370_108419251	3300013104	Corn Rhizosphere	IEHTIDDPKTFSRPWSFTTHPSLLKGELIEYICQENNKDVEHLVGK*
Ga0157375_124729401	3300013308	Miscanthus Rhizosphere	TFSKPWKFTTHPVLLRGELIEYICQENNKDVQHLVGK*
Ga0134081_101532371	3300014150	Grasslands Soil	SKPWTFTTRPSLLRGELIEYICQENNKDVEHLIGK*
Ga0181530_106090701	3300014159	Bog	MGHLEIEHTIDDPGAYSKPWTFGELIEYICQENNRDIQ*
Ga0075301_11293831	3300014262	Natural And Restored Wetlands	IEHIIDDPKTFSKSWSFTTRPVMLRGELIEYICQENNKDIPHIVGK*
Ga0163163_114530442	3300014325	Switchgrass Rhizosphere	HMEIVHMIDDPKTFSRPWTFTTKPTLLKGELIEYICQENNKDVEHLVGK*
Ga0182018_104016132	3300014489	Palsa	YTKPWSFTTHPVMLKGELMEYICQENNRDVEHLVGK*
Ga0181522_110304252	3300014657	Bog	MEIEHIVEDPQTFSKPWKFTTHPTLLKGELIEYICQENNRDVEHLFGK*
Ga0182030_100829361	3300014838	Bog	GAYTAPWKFTTHPIVLKGELMEYICQENNRDLEHLVGASK*
Ga0157376_109813981	3300014969	Miscanthus Rhizosphere	LEIEHTIDDPKTFSKPWEFTTHPVLLRGELIEYICQENNKDVQHLVGK*
Ga0132256_1028028111	3300015372	Arabidopsis Rhizosphere	IEHTIDDPKTFSRPWSFTTHPSLLQGALIEYICQENNKDVEHLVGK*
Ga0182039_107906351	3300016422	Soil	TIDDPKTFSRPWSFTTHPSLLKGELIEYICQENNRDVQHLVGK
Ga0182038_114280522	3300016445	Soil	EHIIDDPKTFSKPWTFTTHPSMLKGELIEYICQENNKDVQHLVGK
Ga0134083_100248581	3300017659	Grasslands Soil	IIDDPKTFSKPWTFTTHPSLLRGELIEYICQENNKDVEHLVGK
Ga0134083_101371323	3300017659	Grasslands Soil	HLEVVHIIDDPKTFSKPWTFTTHPSLLRGELIEYICQENNKDVEHLVGK
Ga0187876_12168221	3300018003	Peatland	KAYTKPWSFTTHPIMLKGELMEYICQENNRDVEHLVGK
Ga0187864_100160611	3300018022	Peatland	IEHTINDPGAYSKPWTFTTHPVLLKGELIEYICQENNRDVQHLVGK
Ga0210387_112703262	3300021405	Soil	TFSKPWRFTTHPTLLKGELIEYICQENNRDVQHLVGQ
Ga0210394_115361011	3300021420	Soil	EHTIDDPKTFSRPWSFTTRPSLLRGELIEYICQENNKDVEHLVGK
Ga0210398_114936311	3300021477	Soil	PKTFSKPWKFTTHPTLLNGELIEYICQENNRDVDHLLGK
Ga0126371_128472281	3300021560	Tropical Forest Soil	TIDDPKTFSKPWSFTTHPSLLKGELIEYICQENNRDVQHLVGK
Ga0242644_10332701	3300022498	Soil	DPGAYTEQWKFTTHPTQLKGELMEYICQENNRDVDHLSGPAK
Ga0242657_11609732	3300022722	Soil	EIEHIVEDPGTFTKPWKFTTHPTLLKGELIEYICQENNRDVEHLFGK
Ga0242665_103149401	3300022724	Soil	PKTFSRPWTFTTKPTLLKGELIEYICQENNKDVEHLVGK
Ga0207642_107154481	3300025899	Miscanthus Rhizosphere	KTFSKPWKFTTHPVLLRGELIEYICQENNKDVQHLVGK
Ga0207699_102805801	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	PKTFSKPWKFTTHPVLLRGELIEYICQENNKDVQHLVGK
Ga0207699_112463562	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	PKTFSKPWSFTTHPSLLRGELIEYICQENNKDVQHMVGK
Ga0207654_112573611	3300025911	Corn Rhizosphere	HIIDDPKTFSRQWTFTTKPTLLRGELIEYICQENNKDVDHLVGK
Ga0207707_103933501	3300025912	Corn Rhizosphere	EIEHTIDDPKVFSRPWTFTTKPTLLRGELIEYICQENNKDIDHLVGK
Ga0207695_106817292	3300025913	Corn Rhizosphere	HTIEDPKTFSKPWKFTTHPTLLRGELIEYICQENNKDVQHLVGK
Ga0207657_103019012	3300025919	Corn Rhizosphere	MFSKPWKFTTHPTLLRGELIEYICQENNKDVQHLVGK
Ga0207657_114263302	3300025919	Corn Rhizosphere	QIEHTIDDPKTFSRPWSFTTHPSLLKGELIEYICQENNKDVEHLVGK
Ga0207694_114632241	3300025924	Corn Rhizosphere	TIDDPKTFSRPWSFTTHPSLLQGELIEYICQENNKDVEHLVGK
Ga0207700_119469182	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	DPKAYTKPWTFTTHPRMLKGELIEYICQENNRDVEHLIGK
Ga0207711_106156563	3300025941	Switchgrass Rhizosphere	PKTFSKLWSFTTHPSLLQGELIEYICQENNRDVEHLVGK
Ga0207689_117386621	3300025942	Miscanthus Rhizosphere	TIDDPKTFSRPWSFTTHPSLLRGELIEYICQENNKDVEHLVGK
Ga0207677_116439312	3300026023	Miscanthus Rhizosphere	DPKTFSKPWKFTTHPVLLRGELIEYICQENNKDVQHLVGK
Ga0207703_106796852	3300026035	Switchgrass Rhizosphere	PKTFSKPWSFTTHPSLLQGELIEYICQENNKDVEHLVGK
Ga0207698_101885831	3300026142	Corn Rhizosphere	IEHPIDDPKTFSKPWKFTTHPVLLRGELIEYICQENNKDVQHLVGK
Ga0209474_103753312	3300026550	Soil	GHLEIVHIIDDPKTFSKPWTFTTRPSLLRGELIEYICQENNKDVEHLIGK
Ga0208827_11318441	3300027641	Peatlands Soil	LDIEHTINDPGAYSKPWTFTTHPTLLKGELIEYICQENNRDVQHLIGK
Ga0209420_11671111	3300027648	Forest Soil	PKAYTKPWSFTTHPVMLKGELMEYICQENNRDVEHLVGK
Ga0208981_11113851	3300027669	Forest Soil	EIEHTIDDPKTFSKPWSFTTRPSLLRGELIEYICQENNKDVEHLVGK
Ga0209274_107557191	3300027853	Soil	SKPWGFTTHPTLLKGELIEYICQENNRDVQHLVGK
Ga0209167_108290121	3300027867	Surface Soil	EHTIDDPKTFSKPWKFTTHPSMLKGELIEYICQENNRDVQHLVGK
Ga0209169_100055347	3300027879	Soil	KAYTKPWTFTTHPVMLKGELMEYICQENNRDVEHLVGK
Ga0209624_102231042	3300027895	Forest Soil	TKPWSFTTHPVMLKGELMEYICQENNRDVEHLVGK
Ga0268264_103085211	3300028381	Switchgrass Rhizosphere	DDPKTFSKPWKFTTHPVLLRGELIEYICQENNKDVQHLVGK
Ga0311371_106451643	3300029951	Palsa	KAYTKPWSFTTHPVMLKGELMEYICQENNRDVQHLVGK
Ga0265756_1128921	3300030805	Soil	AYSKPWTFTTHPRMLTGELIEYICQENNRDVQHLVGK
Ga0307497_101034081	3300031226	Soil	PKTFSKAWTFTTKPTLLKGELIEYICQVNNKDVEHLVGK
Ga0310686_1011781582	3300031708	Soil	VIDDPGAYSTPWTFTTHPVLLKGGLIEYICQENNRDLQHLTGE
Ga0265342_101866611	3300031712	Rhizosphere	DDPKTFSRPWTFTTHPSLLQGELIEYICQENNKDIEHLVGK
Ga0307473_102447451	3300031820	Hardwood Forest Soil	EIVHIIYDPKTFSKPWTFTTRPSLLRGELIEYICQENNKDVEHLIGK
Ga0307473_105851781	3300031820	Hardwood Forest Soil	VHIIDDPKTFSKPWTFTTKPSLLRGELIEYICQENNKDVEHLVGK
Ga0307478_113191522	3300031823	Hardwood Forest Soil	PKTYTKPWSFTTHPVMLKGELMEYICQENNRDVEHLVGK
Ga0306921_118377871	3300031912	Soil	FTKPWTFTTHPTLLKGELIEYICQENNRDVEHLFGK
Ga0306921_124704811	3300031912	Soil	EDPKTFSRTWTFTTKPTLLRGELIEYICQENNKDVEHLVGK
Ga0308175_1020254612	3300031938	Soil	TFSKPWSFTTHPSLLRGELIEYICQENNKDVQHMVGK
Ga0308174_112064021	3300031939	Soil	VVEPWSFTTHPTLLKGELIEYICQENNRDVEHLIGK
Ga0310913_111509562	3300031945	Soil	AYTRPWKFTTHPLMLRGELIEYICQENNRDVEHLVGK
Ga0310909_103500083	3300031947	Soil	YTKPWTVTTHPVLLKGELMEYICQENNKDVPHLVGK
Ga0306926_129103972	3300031954	Soil	TDFGHLEIVHIIDDPKTFSKSWSFTTHPSLLRGELIEYICQENNKDVEHLVGK
Ga0318559_103539702	3300032039	Soil	HMEIVHIIEDPKTFSRTWTFTTKPTLLRGELIEYICQENNKDVEHLVGK
Ga0318514_107910242	3300032066	Soil	DPKMFSRPWTFTTKPSMLKGELIEYICQENNKDVEHLIGK
Ga0311301_109901842	3300032160	Peatlands Soil	DDPGAYTAPWKFTTHPRILRGEMIEYICQENNRDVEHLVGSGK
Ga0335070_102416701	3300032829	Soil	YSKPWSFTTHPYMLKGELMEYICQENNKDVEHLVGSGK
Ga0335076_112172831	3300032955	Soil	EIENIIDDPKAYAHTWSFTTHPYMLKGDLMEYICQENNKDVQHLVGNEHRDGK

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign