NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F077580

Metagenome / Metatranscriptome Family F077580

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F077580
Family Type Metagenome / Metatranscriptome
Number of Sequences 117
Average Sequence Length 62 residues
Representative Sequence RRESDPAKRRAIYLAIEKLALDEALTVPLVDDLSVWAFRANVQGTKYNFNAYPVLSDVTLRK
Number of Associated Samples 107
Number of Associated Scaffolds 117

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.15 %
% of genes from short scaffolds (< 2000 bps) 92.31 %
Associated GOLD sequencing projects 103
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (88.034 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil
(8.547 % of family members)
Environment Ontology (ENVO) Unclassified
(30.769 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(42.735 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 36.67%    β-sheet: 8.89%    Coil/Unstructured: 54.44%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 117 Family Scaffolds
PF00528BPD_transp_1 36.75
PF12911OppC_N 8.55
PF00107ADH_zinc_N 1.71
PF00106adh_short 0.85
PF01642MM_CoA_mutase 0.85
PF02698DUF218 0.85
PF03473MOSC 0.85
PF00296Bac_luciferase 0.85
PF13459Fer4_15 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 117 Family Scaffolds
COG1434Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 familyCell wall/membrane/envelope biogenesis [M] 0.85
COG1884Methylmalonyl-CoA mutase, N-terminal domain/subunitLipid transport and metabolism [I] 0.85
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.85
COG2949Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycinCell wall/membrane/envelope biogenesis [M] 0.85

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms88.03 %
UnclassifiedrootN/A11.97 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2228664021|ICCgaii200_c0864544Not Available835Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101897394All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300000891|JGI10214J12806_11725981All Organisms → cellular organisms → Bacteria1264Open in IMG/M
3300001139|JGI10220J13317_10303416All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300004114|Ga0062593_101947085All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales651Open in IMG/M
3300004479|Ga0062595_101104161All Organisms → cellular organisms → Bacteria694Open in IMG/M
3300005171|Ga0066677_10400137All Organisms → cellular organisms → Bacteria785Open in IMG/M
3300005290|Ga0065712_10522511All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300005294|Ga0065705_10810577All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300005330|Ga0070690_100109697All Organisms → cellular organisms → Bacteria1840Open in IMG/M
3300005332|Ga0066388_101897170All Organisms → cellular organisms → Bacteria1063Open in IMG/M
3300005356|Ga0070674_101153423All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales686Open in IMG/M
3300005367|Ga0070667_101978585All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300005445|Ga0070708_100426128All Organisms → cellular organisms → Bacteria1251Open in IMG/M
3300005458|Ga0070681_10138879All Organisms → cellular organisms → Bacteria2360Open in IMG/M
3300005468|Ga0070707_101405371All Organisms → cellular organisms → Bacteria664Open in IMG/M
3300005471|Ga0070698_101538505All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300005526|Ga0073909_10653238All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300005526|Ga0073909_10656060All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales523Open in IMG/M
3300005536|Ga0070697_100801032All Organisms → cellular organisms → Bacteria834Open in IMG/M
3300005618|Ga0068864_100777625Not Available940Open in IMG/M
3300005713|Ga0066905_100424239All Organisms → cellular organisms → Bacteria1086Open in IMG/M
3300005840|Ga0068870_10744677All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes680Open in IMG/M
3300005841|Ga0068863_101747848All Organisms → cellular organisms → Bacteria632Open in IMG/M
3300006034|Ga0066656_11003167All Organisms → cellular organisms → Bacteria536Open in IMG/M
3300006047|Ga0075024_100345340All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium742Open in IMG/M
3300006049|Ga0075417_10218046All Organisms → cellular organisms → Bacteria908Open in IMG/M
3300006175|Ga0070712_101298919All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300006196|Ga0075422_10441445All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300006572|Ga0074051_10747144All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales532Open in IMG/M
3300006796|Ga0066665_11096796All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium607Open in IMG/M
3300006797|Ga0066659_10020106All Organisms → cellular organisms → Bacteria3803Open in IMG/M
3300006806|Ga0079220_11119336All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300006844|Ga0075428_101159966All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300006846|Ga0075430_100649406All Organisms → cellular organisms → Bacteria870Open in IMG/M
3300006871|Ga0075434_100367398All Organisms → cellular organisms → Bacteria1460Open in IMG/M
3300006880|Ga0075429_100864096All Organisms → cellular organisms → Bacteria792Open in IMG/M
3300006914|Ga0075436_101217759All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300009038|Ga0099829_10135494All Organisms → cellular organisms → Bacteria1953Open in IMG/M
3300009093|Ga0105240_12760944All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium505Open in IMG/M
3300009094|Ga0111539_12067361All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium661Open in IMG/M
3300009098|Ga0105245_13137424All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium512Open in IMG/M
3300009137|Ga0066709_100430834All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1838Open in IMG/M
3300009157|Ga0105092_10954663All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium508Open in IMG/M
3300009174|Ga0105241_11712959All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium611Open in IMG/M
3300009545|Ga0105237_12484316All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium528Open in IMG/M
3300009553|Ga0105249_11370173All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium779Open in IMG/M
3300009553|Ga0105249_12957193All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium545Open in IMG/M
3300009553|Ga0105249_13594642All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium500Open in IMG/M
3300010046|Ga0126384_12480004All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium503Open in IMG/M
3300010303|Ga0134082_10285372All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium689Open in IMG/M
3300010321|Ga0134067_10400235All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium550Open in IMG/M
3300010336|Ga0134071_10000017All Organisms → cellular organisms → Bacteria39982Open in IMG/M
3300010359|Ga0126376_12102448All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium608Open in IMG/M
3300010361|Ga0126378_11160326Not Available871Open in IMG/M
3300010376|Ga0126381_102906217All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium682Open in IMG/M
3300010401|Ga0134121_10739416Not Available938Open in IMG/M
3300010403|Ga0134123_12702202All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium564Open in IMG/M
3300011269|Ga0137392_10000749All Organisms → cellular organisms → Bacteria17649Open in IMG/M
3300012363|Ga0137390_10247803All Organisms → cellular organisms → Bacteria1767Open in IMG/M
3300012363|Ga0137390_11761831All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium552Open in IMG/M
3300012514|Ga0157330_1092915All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300012911|Ga0157301_10143230All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium752Open in IMG/M
3300012930|Ga0137407_10164895All Organisms → cellular organisms → Bacteria1968Open in IMG/M
3300012971|Ga0126369_12888162All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium563Open in IMG/M
3300014326|Ga0157380_12218147All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium613Open in IMG/M
3300014968|Ga0157379_11194280All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium731Open in IMG/M
3300015356|Ga0134073_10234671All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium626Open in IMG/M
3300015371|Ga0132258_12857510Not Available1201Open in IMG/M
3300015371|Ga0132258_13753158Not Available1035Open in IMG/M
3300015372|Ga0132256_101620339All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium757Open in IMG/M
3300016270|Ga0182036_11034099All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium678Open in IMG/M
3300017792|Ga0163161_11507415All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium590Open in IMG/M
3300017997|Ga0184610_1238275All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium606Open in IMG/M
3300018053|Ga0184626_10068967All Organisms → cellular organisms → Bacteria1489Open in IMG/M
3300021560|Ga0126371_11884721All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium717Open in IMG/M
3300025903|Ga0207680_10878338All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium643Open in IMG/M
3300025905|Ga0207685_10074851All Organisms → cellular organisms → Bacteria1384Open in IMG/M
3300025910|Ga0207684_10857229All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium765Open in IMG/M
3300025915|Ga0207693_10372747Not Available1117Open in IMG/M
3300025918|Ga0207662_10959990All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium606Open in IMG/M
3300025940|Ga0207691_10588822Not Available942Open in IMG/M
3300026121|Ga0207683_10660545All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomicrobium → Sphingomicrobium astaxanthinifaciens968Open in IMG/M
3300026354|Ga0257180_1000501All Organisms → cellular organisms → Bacteria2628Open in IMG/M
3300026359|Ga0257163_1076849All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium540Open in IMG/M
3300026529|Ga0209806_1074830All Organisms → cellular organisms → Bacteria1512Open in IMG/M
3300026538|Ga0209056_10049613All Organisms → cellular organisms → Bacteria3768Open in IMG/M
3300027846|Ga0209180_10339275Not Available858Open in IMG/M
3300027873|Ga0209814_10156690Not Available978Open in IMG/M
3300028587|Ga0247828_10191154Not Available1060Open in IMG/M
3300028673|Ga0257175_1106093All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium553Open in IMG/M
3300028792|Ga0307504_10208815All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium696Open in IMG/M
3300028796|Ga0307287_10266494All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium648Open in IMG/M
3300028807|Ga0307305_10032455All Organisms → cellular organisms → Bacteria2389Open in IMG/M
3300028809|Ga0247824_10190481Not Available1118Open in IMG/M
3300028812|Ga0247825_11057545All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium590Open in IMG/M
3300031562|Ga0310886_10065015All Organisms → cellular organisms → Bacteria1706Open in IMG/M
3300031720|Ga0307469_11834643All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium586Open in IMG/M
3300031720|Ga0307469_11855287All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium583Open in IMG/M
3300031778|Ga0318498_10047633All Organisms → cellular organisms → Bacteria1897Open in IMG/M
3300031820|Ga0307473_11141167All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium576Open in IMG/M
3300032052|Ga0318506_10081413All Organisms → cellular organisms → Bacteria1360Open in IMG/M
3300032054|Ga0318570_10021027All Organisms → cellular organisms → Bacteria2476Open in IMG/M
3300032059|Ga0318533_11019639All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium607Open in IMG/M
3300032067|Ga0318524_10626623All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium566Open in IMG/M
3300032174|Ga0307470_10554125Not Available850Open in IMG/M
3300032174|Ga0307470_11184309All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium620Open in IMG/M
3300032174|Ga0307470_11185762All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium619Open in IMG/M
3300032180|Ga0307471_102110201All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium708Open in IMG/M
3300032180|Ga0307471_102122100All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium707Open in IMG/M
3300032180|Ga0307471_103716977All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium540Open in IMG/M
3300032205|Ga0307472_102203308All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium556Open in IMG/M
3300032421|Ga0310812_10224260Not Available821Open in IMG/M
3300032828|Ga0335080_11657637All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium628Open in IMG/M
3300033475|Ga0310811_10188176All Organisms → cellular organisms → Bacteria2540Open in IMG/M
3300034818|Ga0373950_0108879All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium603Open in IMG/M
3300034819|Ga0373958_0158045All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium572Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil8.55%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil7.69%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere7.69%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.84%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.98%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.13%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.13%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil3.42%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.42%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.56%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.56%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.71%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.71%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.71%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.71%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.71%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.71%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.71%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.71%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil1.71%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.71%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.71%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.85%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.85%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.85%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.85%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.85%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.85%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.85%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.85%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.85%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.85%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2228664021Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300001139Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005290Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006572Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012514Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015356Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017997Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coexEnvironmentalOpen in IMG/M
3300018053Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026354Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-BEnvironmentalOpen in IMG/M
3300026359Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-AEnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028587Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3EnvironmentalOpen in IMG/M
3300028673Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-BEnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300028809Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48EnvironmentalOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032054Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032067Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032421Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300033475Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YCEnvironmentalOpen in IMG/M
3300034818Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3Host-AssociatedOpen in IMG/M
3300034819Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICCgaii200_086454422228664021SoilESDPARRRAIYLAAEKLALDEALTVPLVDELAVWAFRATVQGVKYNFNAYPVLSDATIRR
INPhiseqgaiiFebDRAFT_10189739423300000364SoilGRREFDPAKRRAIYVAIEKLAIEEALTVPLLDDLSVWAYRANVQGAKYNFNAYPVLSDVTIRK*
JGI10214J12806_1172598133300000891SoilDGRRESDPARRRAIYLAAEKLALDEALTVPLVDELAVWAFRATVQGVKYNFNAYPVLSDATIRR*
JGI10220J13317_1030341613300001139SoilNAKLDGLLADGRRESDPARRRAIYLAAEKLALDEALTVPLVDELAVWAFRATVQGVKYNFNAYPVLSDATIRR*
Ga0062593_10194708513300004114SoilLLEQGRLESDPAKRRAVYVQITRLLLDEAASVPLVDELAVWAYRSSVQGTKYNFNAYPVLSDAHLVRR*
Ga0062595_10110416123300004479SoilLEQGRREADPAKRRALYLAIVQLALDEALTVPLVDELSVWAFRSGVQGVKYNFNAYPVLGDATLRK*
Ga0066677_1040013713300005171SoilESDPVKRRAVYLQIEKLALDEALTVPLVDELAVWAFRANVQGVKYNFNAYPVLSDATTTRR*
Ga0065712_1052251113300005290Miscanthus RhizosphereLLSDGRRESDPARRRAIYLAAEKLALDEALTVPLVDELAVWAFRATVQGVKYNFNAYPVLSDATIRR*
Ga0065705_1081057723300005294Switchgrass RhizosphereRESDPAKRRAIYLAIEKLALDQALTVPLVDDLSVWAFRANVQGTKYNFNAYPVLSDVTLRK*
Ga0070690_10010969733300005330Switchgrass RhizosphereDGLLSDGRRESDPARRRAIYLAAEKLALDEALTVPLVDELAVWAFRATVQGVKYNFNAYPVLSDATIRR*
Ga0066388_10189717023300005332Tropical Forest SoilLEQGRRESDPAKRRAIYIGIEQLALEEALTVPLVDELSVWAFRSGVQAVKYNFNAYPLLGDATLRK*
Ga0070674_10115342313300005356Miscanthus RhizosphereRRESDPAKRRAVYVQITRLLLDDAASVPLVDELAVWAYRSSVQGTKYNFNAYPVLSDAHLVRR*
Ga0070667_10197858523300005367Switchgrass RhizosphereEQGRREFDPAKRRAIYVAIEKLTLEEALTVPLLDDLSVWAFRANVQGAKYNFNAFPVLSDVTIRK*
Ga0070708_10042612833300005445Corn, Switchgrass And Miscanthus RhizosphereEFDPAKRRAIYLSIEQMALDEALTVPLLDELSVWAFRAAVRGVKYNFATYPVLSDAAIQK
Ga0070681_1013887943300005458Corn RhizosphereAKRRAIYLSIAQLALDEALTVPLVDELSVWAYRTGVQGIKYNFNAYPILGDATLRK*
Ga0070707_10140537113300005468Corn, Switchgrass And Miscanthus RhizosphereREFDPAKRRAIYLSIEQMALDEALTVPLLDELSVWAFRAAVRGVKYNFATYPVLSDAAIR
Ga0070698_10153850513300005471Corn, Switchgrass And Miscanthus RhizosphereRRESDPAKRRAIYLAIEKLALDEALTVPLVDDLSVWAFRANVQGTKYNFNAYPVLSDVTLRK*
Ga0073909_1065323813300005526Surface SoilRESDPAKRRAIYVSIEQLAIEEALTVPLVDELSVWAFRSGVQGVKYNFNAYPILGDAALRK*
Ga0073909_1065606013300005526Surface SoilEQGRRESDPAKRRAIYLAIEKLALDEALTVPLVDDLSVWAFRANVQGTKYNFNAYPVLSDVILRK*
Ga0070697_10080103223300005536Corn, Switchgrass And Miscanthus RhizosphereQGRREFDPAKRRAVYLAIEKLAVDEALTVPLLDDLSVWAYRANVQGAKYNFNAYPVLSDVTIRR*
Ga0068864_10077762523300005618Switchgrass RhizosphereKRRAIYLAIEKLALDQALTVPLVDDLSVWAFRANVQGTKYNFNAYPVLSDVILRK*
Ga0066905_10042423923300005713Tropical Forest SoilESDPAKRRAVYVQLTRLLLDDAASVPLVDELAVWAYRSNIQGTKYNFNAYPVLSDAHLVRR*
Ga0068870_1074467713300005840Miscanthus RhizosphereLEQGRRESDLAKRRAIYLAIEKLALDEALTVPLVDDLSVWAFRANVQGTKYNFNAYPVLSDAILRK*
Ga0068863_10174784813300005841Switchgrass RhizosphereRRESDPAKRRAIYLAIEKLALDQALTVPLVDDLSVWAFRANVQGTKYNFNAYPVLSDVILRK*
Ga0066656_1100316723300006034SoilLLADGRKESDPAKRRAIYLAIEKLALDEAFTVPLVDDLAVWAFRANVQGTKYNFNAYPVLGDAFVKK*
Ga0075024_10034534013300006047WatershedsKRRAIYVAIEKLALDEALTVPLVDELAVWAFRAPVQGVKYNFNAYPVLSDAMIRR*
Ga0075417_1021804613300006049Populus RhizosphereFDPAKRRAIYVAIEKLTLEEALTVPLLDDLSVWAFRANVQGAKYNFNAYPVLSDVTIRK*
Ga0070712_10129891923300006175Corn, Switchgrass And Miscanthus RhizosphereADGRREADPAKRRAIYLAAEKLALDEALTVPLVDELAVWAFRAPVQGVKYNFNAYPVLSDAIVRR*
Ga0075422_1044144523300006196Populus RhizosphereLEQGRRESDPAKRRAIYLSIAQLALDEALTVPLVDELSVWAFRSGVQGVKYNFNAYPILGDATLRK*
Ga0074051_1074714423300006572SoilQMLEQGRREFDPAKRRALYLAIEKLALDEALTVPLLDDLSVWAYRANVQGAKYNFNAYPVLSDATIRR*
Ga0066665_1109679623300006796SoilRRVIYLAIEKLALEDALTVPLVDELAVWAFRAGVQRVKYNFNAYPVLSDAVIVKK*
Ga0066659_1002010613300006797SoilRREFDPAKRRAIYLSIEKLALEEALTVPLLDDLSVWAYRANVQGAKYNFNAYPVLSDVTIRR*
Ga0079220_1111933623300006806Agricultural SoilEFDPAKRRAIYLSIAHLALDEALTVPLVDELSVWAFRSGVQAVKYNFNAFPILGDATLRR
Ga0075428_10115996613300006844Populus RhizosphereKLDQLLADGRGESDPAKRRTIYRDVQKLVLDDAMAAPLVDDLAVWAFRANVQGTKYNFNAYPVLSDAFIKK*
Ga0075430_10064940613300006846Populus RhizosphereWSCVKNAKLDQLLADGRGESDPAKRRTIYRDVQKLVLDDAMAAPLVDDLAVWAFRANVQETKYNFNAYPVLSDAFIKK*
Ga0075434_10036739813300006871Populus RhizosphereAKRRAIYVSIEQFAIEEALAVPLVDELSVWAYRSGVQGVKYNFNAYPILGDATLRK*
Ga0075429_10086409613300006880Populus RhizosphereNFNWSCVKNAKLDQLLADGRGESDPAKRRTIYRDVQKLVLDDAMAAPLVDDLAVWAFRANVQGTKYNFNAYPVLSDAFIKK*
Ga0075436_10121775913300006914Populus RhizosphereSDPAKRRAIYLAAEKLALDEALTVPLVDELAVWAFRAPVQGVKYNFNAYPVLSDAIIRR*
Ga0099829_1013549413300009038Vadose Zone SoilNAKLDGLLADGRREADPAKRRAIYVAVEKLALDEALTVPLVDELAVWAFRAPVQGVKYNFNAYPVLSDATIRR*
Ga0105240_1276094413300009093Corn RhizosphereRRAIYLAIEKLALDEALTVPLVDDLSVWAFRANVQGTKYNFNAYPVLSDAILRK*
Ga0111539_1206736113300009094Populus RhizospherePAKRRAIYVSIAQLAIDEALTVPLVDELSVWAFRAGVQGVKYNFNAYPILGDATLRK*
Ga0105245_1313742413300009098Miscanthus RhizosphereKRRALYLAIVQLALDEALTVPLVDELSVWAFRSGVQGVKYNFNAYPVLGDATLRK*
Ga0066709_10043083433300009137Grasslands SoilDEMREQGRREADPAKRRAIYLSIEKLALDDALTVPLVDELSVWAFQSTVMGVVYNFNAYPILSDATLKR*
Ga0105092_1095466313300009157Freshwater SedimentKRRAIYLAIEKLALDEALTVPLVDDLSVWAFRANVQGTKYNFNAYPVLSDVILRK*
Ga0105241_1171295913300009174Corn RhizosphereRALYLAILQLALDEALTVPLVDELSVWAFRSGVQGVKYNFNAYPVLGDATLRK*
Ga0105237_1248431623300009545Corn RhizosphereRESDPNKRRAIYLAIEKLALDEALTVPLVDELSVWAFRANVQGAKYNFNAYPVLSDVTLRK*
Ga0105249_1137017313300009553Switchgrass RhizosphereMLEQGRRESDPAKRRAIYLAIEKLALDEALTVPLVDDLSVWAFRANVQGTKYNFNAYPVLSDVTLRK*
Ga0105249_1295719323300009553Switchgrass RhizosphereDGLLADGRRESDPARRRAIYLAAEKLALDEALTVPLVDELAVWAFRATVQGVKYNFNAYPVLSDATIRR*
Ga0105249_1359464213300009553Switchgrass RhizosphereDPAKRRAIYVSIEQLAIEEALTVPLVDELSVWAFRSGVQGVKYNFNAYPILGDAALRK*
Ga0126384_1248000413300010046Tropical Forest SoilAKRRAIYLSIAHLALDEALTVPLVDELSVWAFRSGVQAVKYNFNAFPILGDATLRR*
Ga0134082_1028537213300010303Grasslands SoilRAVYLAIEKLAIEEALTVPLLDDLSVWAYRANVQGAKYNFNAYPVLSDVTIRR*
Ga0134067_1040023523300010321Grasslands SoilRRESDPVKRRAVYLQIEKLALDEALTVPLVDELAVWAFRANVQGVKYNFNAYPLLSDTTLRK*
Ga0134071_10000017453300010336Grasslands SoilRAIYLAIEQMALDEALTVPLLDELSVWAFRAGVRGVKYNFATYPVLSDAAIQK*
Ga0126376_1210244823300010359Tropical Forest SoilLEQGRRESDPAKRRAIYVSIEQFAIEEALTVPLVDELSVWAFRSGVQGVKYNFNAYPILGDATLRK*
Ga0126378_1116032623300010361Tropical Forest SoilRESDPAKRRAIYVSIEQLAIEEALTVPLVDELSVWAFRSGVQGVKYNFNAYPILGDATLRS*
Ga0126381_10290621723300010376Tropical Forest SoilDPAKRRAIYLAIEKLALDDALTVPLVDELSVWAFRGAVQGVVYNFNAYPVLSDTRSGR*
Ga0134121_1073941623300010401Terrestrial SoilRESDPAKRRAIYLAIEKLALEEALTVPLVDELAVWAFRTPVQGVKYNFNAYPVLSDTMIRR*
Ga0134123_1270220223300010403Terrestrial SoilRESDPAKRRAIYLQIQKQLIEDAVSVPLLDDLAVWAFRANVQGTKYNFNAYPVLSDAFIRK*
Ga0137392_10000749183300011269Vadose Zone SoilSDPAKRRAVYLQIEKLALDEALTVPLVDELAVWAFRANVQGVKYNFNAYPVLSDATTRR*
Ga0137390_1024780313300012363Vadose Zone SoilTKLDQLLEQVRRESDPAKRRAIYLAIEKLALEDALTVPLVDDLAVWAFRAGVQRVKYNFNAYPLLSDTTIRK*
Ga0137390_1176183123300012363Vadose Zone SoilGRRESDPAKRRAIYLAIEKLALEDALTVPLVDELAVWAFRAGVQRVKYNFNAYPVLSDVIIKK*
Ga0157330_109291523300012514SoilVHEFDPAKRRAIYVAIEKLVVDDAMTVPLLDDLSVWAYRANVQGAKYNFNAYPVLSDVTIRR*
Ga0157301_1014323013300012911SoilGRLESDPAKRRAVYVQITRLLLDEAASVPLVDELAVWAYRSSVQGTKYNFNAYPVLSDAHLVRR*
Ga0137407_1016489513300012930Vadose Zone SoilALYLSIAQLALDEALTVPLVDELSVWAFRTGVQGIKYNFNAYPILGDATLRK*
Ga0126369_1288816213300012971Tropical Forest SoilKRRAIYVSIEQFAIEEALTVPLVDELSVWAFRSGVQGVKYNFNAYPILGDATLRK*
Ga0157380_1221814723300014326Switchgrass RhizosphereGRRESDPAKRRAIYLTIEKLALDDALTVPLVDELSVWAFRSTVTGVSYNFNAYPVLSDATIKR*
Ga0157379_1119428013300014968Switchgrass RhizosphereRRESDPARRRAIYLAAEKLALDEALTVPLVDELAVWAFRATVQGVKYNFNAYPVLSDATIRR*
Ga0134073_1023467123300015356Grasslands SoilWAIYLSIEQMALDEALTVPLLDELSVWAFRASVQGVKYNFATYPVLSDAAIRK*
Ga0132258_1285751013300015371Arabidopsis RhizosphereRTIYVSIEQLALEEALTVPLVDELSVWAFRAGVQAVKYNFNAYPLLGDATLRK*
Ga0132258_1375315813300015371Arabidopsis RhizosphereRRAIYLAIEKLASDDALTVPLVDELSVWAFRSNVVGVVYNFNAYPVMSDASIKR*
Ga0132256_10162033913300015372Arabidopsis RhizosphereEQGRREFDPAKRRAIYLAIEKLAVDEALTVPLLDDLSVWAYRANVQGAKYNFNAYPVLSDVTIRR*
Ga0182036_1103409923300016270SoilRRAIYLAIEKLTVDEALTVPLLDDLSVWAYRANVQGAKYNFNAYPVLSDVTIRR
Ga0163161_1150741523300017792Switchgrass RhizosphereDPAKRRAIYLAIEKLALDEALTVPLVDELAVWAFRTPVQGVKYNFNAYPVLSDVTIRR
Ga0184610_123827513300017997Groundwater SedimentESDQAKRRATYLSIAQLALDEALTVPLVDELSVWAFRSGVQAVKFNFNAYPILGDATLRK
Ga0184626_1006896713300018053Groundwater SedimentNFNWSCVKNAKLDGLLEQGRRESDQAKRRATYLSIAQLALDEALTVPLVDELSVWAFRSGVQAVKFNFNAYPILGDATLRK
Ga0126371_1188472113300021560Tropical Forest SoilAIYLAIEKFVIDEALTVPLLDDLSVWAYRANVQGAKYNFNAYPVLSDVTIRR
Ga0207680_1087833813300025903Switchgrass RhizosphereQMLEQGRREADPTKRRALYLAIVQLALDEALTVPLVDELSVWAFRSGVQGVKYNFNAYPVLGDATLRK
Ga0207685_1007485113300025905Corn, Switchgrass And Miscanthus RhizosphereRRAIYLAAEKLALDEALTVPLVDELAVWAFRAPVQGVKYNFNAYPVLSDAIIRR
Ga0207684_1085722913300025910Corn, Switchgrass And Miscanthus RhizosphereRAIYLAIEKLALDEALTVPLVDDLSVWAFRANVQGTKYNFNAYPVLSDVILRK
Ga0207693_1037274713300025915Corn, Switchgrass And Miscanthus RhizosphereKLDGLLADGRREADPAKRRAIYLAAEKLALDEALTVPLVDELAVWAFRAPVQGVKYNFNAYPVLSDAIVRR
Ga0207662_1095999013300025918Switchgrass RhizosphereRRAVYIQITRLLLDEAASVPLVDELAVWAYRSNVQGTKYNFNAYPVLSDAHLVRR
Ga0207691_1058882213300025940Miscanthus RhizosphereKRRAVYLAIEKLAVDEALTVPLLDDLSVWAYRANVQGAKYNFNAYPVLSDVTIRR
Ga0207683_1066054513300026121Miscanthus RhizosphereIARRLAWSDSRRPNFNWSCVKNAKLDQMLEQGRRESDQAKRRAIYLSITRLALDEALTVPLVDELSVWAYQAGVQGIKYNFNAYPILGDATLRK
Ga0257180_100050143300026354SoilKNAKLDGLLADGRREADPAKRRAIYVAVEKLALDEALTVPLVDELAVWAFRAPVQGVKYNFNAYPVLSDATIRR
Ga0257163_107684913300026359SoilTKLDEMLTEGRREPDPAKRRAIYLAIEKFALEEALTVPLVDELAVWAFRTGVQGVKYNFNAYPVLSDTTIRR
Ga0209806_107483033300026529SoilAIYLAIEQMVLDEALTVPLVDELSVWAFRANVRGVKYNFATYPVLSDVAIQK
Ga0209056_1004961313300026538SoilRRAIYLAIEQMVLDEALTVPLVDELSVWAFRANVRGVQYNFATYPVLSDAAIQK
Ga0209180_1033927513300027846Vadose Zone SoilADPAKRRAIYLAAEKLALDEALTVPLVDELAVWAFRAPVQGVKYNFNAYPVLSDATIRR
Ga0209814_1015669023300027873Populus RhizosphereDPAKRRAIYLSIAHLALDEALTVPLVDELSVWAFRSGVQAVKYNFNAFPILGDATLRR
Ga0247828_1019115413300028587SoilARRRAIYLAAEKLALDEALTVPLVDELAVWAFRATVQGVKYNFNAYPVLSDATIRR
Ga0257175_110609323300028673SoilKLDGLLADGRREADPAKRRAIYLAAEKLALDEALTVPLVDELAVWAFRAPVQGVKYNFNAYPVLSDATIRR
Ga0307504_1020881513300028792SoilGRRESDPAKRRAIYLAIEKLVLEEALTVPLVDELAVWAFRTGVQGVKYNFNAYPVLSDTTIRR
Ga0307287_1026649413300028796SoilDELLTEGRRESDPAKRRAIYLAIEKLALEEALTVPLVDELAVWAFRTGVQGVKYNFNAYPVLSDTTIRR
Ga0307305_1003245543300028807SoilKRRAIYLAIEKLALEEALTVPLVDELAVWAFRTGVQGVKYNFNAYPVLSDTTIRR
Ga0247824_1019048123300028809SoilDPAKRRAIYVSIEQLAIEEALTVPLVDELSVWAFRSGVQAVKYNFNAYPLLGDATLRK
Ga0247825_1105754513300028812SoilQMLEQGRREADQAKRRAIYLSIAQLALDEALTVPLVDELSVWAYRTGVQGVKYNFNAYPVLGDATLRK
Ga0310886_1006501513300031562SoilKRRALYLAIVQLALDEALTVPLVDELSVWAFRSGVQGVKYNFNAYPVLGDATLRK
Ga0307469_1183464323300031720Hardwood Forest SoilLDEMLADGRRESDPVKRRAIYLAIEKLALDEALTVPLVDELAVWAFRAPVQGVKYNFNAYPVLSDAMIRR
Ga0307469_1185528723300031720Hardwood Forest SoilLDGLLEQGRRESDAAKRRAIYLSIAQLALDEALTVPLVDELSVWAFRTGVQSVKYNFNAYPILGDATLRR
Ga0318498_1004763313300031778SoilGRRETDPAKRRAIYVSIEQLAIEEALTVPLVDELSVWAFRSGVQGVKYNFNAYPILGDATLRK
Ga0307473_1114116723300031820Hardwood Forest SoilGVFDPAKRRAIYLAIEKLAVDEALTVPLLDDLSVWAYRANVQGAKYNFNAYPVLSDVTIR
Ga0318506_1008141313300032052SoilAKRRAIYVSIEQLAIEEALTVPLVDELSVWAFRSGVQGVKYNFNAYPILGDATLRK
Ga0318570_1002102743300032054SoilTDPAKRRAIYVSIEQLAIEEALTVPLVDELSVWAFRSGVQGVKYNFNAYPILGDATLRK
Ga0318533_1101963923300032059SoilQGRRESDSAKRRAIYVSIEQLAIEEALTVPLVDELSVWAFRSGVQDVKYNFNAYPILGDATLRK
Ga0318524_1062662313300032067SoilRETDPAKRRAIYVSIEQLAIEEALTVPLVDELSVWAFRSGVQGVKYNFNAYPILGDATLR
Ga0307470_1055412513300032174Hardwood Forest SoilRRESDPAKRRAIYLALEKLVLDEALTVPLVDDLSVWAFRANVQGTKYNFNAYPVLSDVILRK
Ga0307470_1118430913300032174Hardwood Forest SoilEQGRRESDPAKRRAVYVQITRLLLDDAASVPLVDELAVWAYRSNVQGTKYNFNAYPVLSDAHIVRR
Ga0307470_1118576223300032174Hardwood Forest SoilLEQGRRESDPAKRRAIYLSIAQLALDEALTVPLVDELSVWAFRSGVQGVKYNFNAYPVLGDATLRK
Ga0307471_10211020123300032180Hardwood Forest SoilLEQGRRKFDPAKRRAIYVAIEKLAIEEALTVPLLDDLSVWAYRANVQGAKYNFNAYPVLSDVTIRK
Ga0307471_10212210023300032180Hardwood Forest SoilQGRRESDPAKRRALYVSIAQLAIEEALTVPLVDELSVWAFRAGVQGVKYNFNAYPILGDAALRK
Ga0307471_10371697723300032180Hardwood Forest SoilAIYVSIEQFAIEEALTVPLVDELSVWAFRSGVQGVKYNFNAYPILGDAALRK
Ga0307472_10220330813300032205Hardwood Forest SoilQGRREFDPAKRRALYVAIEKLAVDEALTVPLLDDLSVWAYRANVQGAKYNFNAYPVLSDVTIRR
Ga0310812_1022426013300032421SoilLDALLEQGRRESDQAKRRAIYLSIARLAIDEALTVPLVDELSVWAYQAGVQGVKYNFNAYPVLGDATLRK
Ga0335080_1165763723300032828SoilRRAIYVSIEQLAIEEALTVPLVDELSVWAFRSGVQGVKYNFNAYPILGDATLRK
Ga0310811_1018817613300033475SoilDGRRESDPARRRAIYLAAEKLALDEALTVPLVDELAVWAFRATVQGVKYNFNAYPVLSDATIRR
Ga0373950_0108879_3_2063300034818Rhizosphere SoilLLADGRRESDPARRRAIYLAAEKLALDEALTVPLVDELAVWAFRATVQGVKYNFNAYPVLSDATIRR
Ga0373958_0158045_2_1753300034819Rhizosphere SoilPAKRRAIYLAAEKLALDEALTVPLVDELAVWAFRAPVQGVKYNFNAYPVLSDATIRR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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