NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F076400

Metagenome Family F076400

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F076400
Family Type Metagenome
Number of Sequences 118
Average Sequence Length 53 residues
Representative Sequence FDKAKFEELLAKLQTHQEQVFGELPVHYENVGHWLQTDAGNGTVDVLLDFK
Number of Associated Samples 100
Number of Associated Scaffolds 118

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 21.19 %
% of genes from short scaffolds (< 2000 bps) 21.19 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (88.136 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(37.288 % of family members)
Environment Ontology (ENVO) Unclassified
(34.746 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(46.610 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 21.52%    β-sheet: 20.25%    Coil/Unstructured: 58.23%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 118 Family Scaffolds
PF02540NAD_synthase 27.12
PF01171ATP_bind_3 13.56
PF00850Hist_deacetyl 3.39
PF13349DUF4097 2.54
PF13345Obsolete Pfam Family 1.69
PF01026TatD_DNase 1.69
PF07244POTRA 0.85
PF01638HxlR 0.85
PF00733Asn_synthase 0.85
PF13779DUF4175 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 118 Family Scaffolds
COG0171NH3-dependent NAD+ synthetaseCoenzyme transport and metabolism [H] 27.12
COG0037tRNA(Ile)-lysidine synthase TilS/MesJTranslation, ribosomal structure and biogenesis [J] 13.56
COG0301Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)Translation, ribosomal structure and biogenesis [J] 13.56
COG0482tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domainTranslation, ribosomal structure and biogenesis [J] 13.56
COG0519GMP synthase, PP-ATPase domain/subunitNucleotide transport and metabolism [F] 13.56
COG06037-cyano-7-deazaguanine synthase (queuosine biosynthesis)Translation, ribosomal structure and biogenesis [J] 13.56
COG1606ATP-utilizing enzyme, PP-loop superfamilyGeneral function prediction only [R] 13.56
COG0123Acetoin utilization deacetylase AcuC or a related deacetylaseSecondary metabolites biosynthesis, transport and catabolism [Q] 6.78
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 0.85


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A88.14 %
All OrganismsrootAll Organisms11.86 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300006034|Ga0066656_10121555All Organisms → cellular organisms → Bacteria → Acidobacteria1607Open in IMG/M
3300006173|Ga0070716_101182555All Organisms → cellular organisms → Bacteria → Acidobacteria613Open in IMG/M
3300006755|Ga0079222_11052512Not Available707Open in IMG/M
3300006800|Ga0066660_11028851All Organisms → cellular organisms → Bacteria → Acidobacteria659Open in IMG/M
3300006954|Ga0079219_11446610Not Available618Open in IMG/M
3300007265|Ga0099794_10769148All Organisms → cellular organisms → Bacteria → Acidobacteria515Open in IMG/M
3300009698|Ga0116216_10849786Not Available546Open in IMG/M
3300011120|Ga0150983_12185504Not Available518Open in IMG/M
3300011269|Ga0137392_11311116All Organisms → cellular organisms → Bacteria → Acidobacteria583Open in IMG/M
3300012207|Ga0137381_10701229All Organisms → cellular organisms → Bacteria → Acidobacteria880Open in IMG/M
3300012349|Ga0137387_11138854All Organisms → cellular organisms → Bacteria → Acidobacteria554Open in IMG/M
3300012349|Ga0137387_11190267Not Available539Open in IMG/M
3300012922|Ga0137394_10746246Not Available822Open in IMG/M
3300014150|Ga0134081_10126664All Organisms → cellular organisms → Bacteria → Acidobacteria823Open in IMG/M
3300015242|Ga0137412_10326566Not Available1198Open in IMG/M
3300020583|Ga0210401_11409395Not Available554Open in IMG/M
3300021088|Ga0210404_10008632All Organisms → cellular organisms → Bacteria → Acidobacteria4126Open in IMG/M
3300021475|Ga0210392_11212451All Organisms → cellular organisms → Bacteria → Acidobacteria565Open in IMG/M
3300024347|Ga0179591_1049881All Organisms → cellular organisms → Bacteria → Acidobacteria1671Open in IMG/M
3300025939|Ga0207665_11297352All Organisms → cellular organisms → Bacteria → Acidobacteria580Open in IMG/M
3300026328|Ga0209802_1137357Not Available1052Open in IMG/M
3300026328|Ga0209802_1283743All Organisms → cellular organisms → Bacteria → Acidobacteria552Open in IMG/M
3300027862|Ga0209701_10181936Not Available1264Open in IMG/M
3300027862|Ga0209701_10713920All Organisms → cellular organisms → Bacteria → Acidobacteria515Open in IMG/M
3300031719|Ga0306917_11236384Not Available579Open in IMG/M
3300031823|Ga0307478_10402282Not Available1134Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil37.29%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil14.41%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.17%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil8.47%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil6.78%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.39%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.54%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.69%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.69%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.69%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.69%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.85%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.85%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.85%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.85%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.85%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.85%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.85%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.85%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.85%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.85%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.85%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002917Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cmEnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019890Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300024347Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026277Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027546Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027575Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027629Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027635Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027645Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027651Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027729Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027738Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028800Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaGHost-AssociatedOpen in IMG/M
3300030399II_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12630J15595_1004249913300001545Forest SoilSGDVFDKTKFEDTLLKLQVHREQIFVDLPIHYESVGHWLQTDPETGNVDVLLDFK*
JGIcombinedJ26739_10082590223300002245Forest SoilVFDKTKYEDILLKLQVHREQIFVDLPVHYESVGHWLQTDADTGMVDVLLDFK*
JGI25616J43925_1007607113300002917Grasslands SoilAAGDIFDKAKFEELLAKLQTHQEQVFGELPLHYDNVGHWLQTDASKGTVDVLLDFK*
Ga0066680_1006407213300005174SoilELFDKAKFEELLTKLQSHQELVFGELPVHYDNVGHWLQTDAAKGTVDVLLDFK*
Ga0066680_1035102013300005174SoilELFDKAKFEELLTKLQSHQELVFGELPVHYDNVGHWLQTDTAKGTVDVLLDFK*
Ga0066673_1004380033300005175SoilTGELFDKAKFEELLSKLQTRQEQVFGELPVHYDNVGHWLQTDAANGTVDVLLDFK*
Ga0066679_1017681113300005176SoilKFEELLTKLQSHQELVFGELPVHYDNVGHWLQTDTAKGTVDVLLDFK*
Ga0066684_1057015313300005179SoilGEIFDKAKFEELLAKLQTHQEQVFGELPVHYENVGHWLQTDAGSGTVDVLLDFK*
Ga0066687_1066840323300005454SoilAKFEELLTKLQSHQELVFGELPVHYDNVGHWLQTDAAKGTVDVLLDFK*
Ga0066695_1078092023300005553SoilKAKFEELLAKLQTHQEQVFGELPLHYDNVGHWLQTDASKGTVDVLLDFK*
Ga0066703_1080933823300005568SoilGELFDKAKFEELLTKLQSHQELVFGELPVHYDNVGHWLQTDTAKGTVDVLLDFK*
Ga0066705_1031235413300005569SoilEELLTKLQSHQELVFGELPVHYDNVGHWLQTDAAKGTVDVLLDFK*
Ga0066691_1092134213300005586SoilAWPIAAGDIFDKAKFEELLAKLQTHQEQVFGELPLHYENVGHWLQTDGSKGTVDVLLDFK
Ga0066706_1120001723300005598SoilKAKFEELLAKLQTHQEQVFGELPVHYENVGHWLQTDAGSGTVDVLLDFK*
Ga0066656_1012155533300006034SoilELLAKLQTHQEQVFGELPVHYENVGHWLQTEAGKGTVDVLLDFK*
Ga0075017_10036633113300006059WatershedsAGAVFDKAKFEELLTKLQMHQEQIFGELPLHYENVGHWLQTDAGKGTVDVLLDFK*
Ga0070716_10118255513300006173Corn, Switchgrass And Miscanthus RhizosphereLHAAWPFPAGAVFDKAKFEELLIKLQTHQEQVFGELPVHYENVGHWLQTDPNKYTVDVLLDFK*
Ga0079222_1105251213300006755Agricultural SoilAWPIPQGEIFDNVKYEDVLTKPQLHQEQIFGELPLHYQEVGHWLQADANTGTVDVLLDFK
Ga0066660_1102885123300006800SoilLAKLQTHQEQVFGELPVHYEKVGHWLQTDPGNNTVDVLLDFK*
Ga0073928_1098820813300006893Iron-Sulfur Acid SpringIFDKTKYEDILLKLQVHREQIFVDLPVHYESVGHWLQTDADTGMVDVLLDFK*
Ga0079219_1144661013300006954Agricultural SoilHAAWPISQGDIFDKTKYEEVLTKLQLHQGQIFGELPLHYESVGHWLQEDANSGTVDVLLDFK*
Ga0099794_1075980813300007265Vadose Zone SoilIAAGDIFDKAKFEELLAKLQTHQEQVFGELPLHYENVGHWLQTDASKGTVDVLLDFK*
Ga0099794_1076914813300007265Vadose Zone SoilLLAKLQTHQEQVFGELPVHYENVGHWLQTDAGKNTVDVLLDFK*
Ga0066710_10364602013300009012Grasslands SoilTGELFDKAKFEELLAKLQTHQEQVFGELPVHYDNVGHWLQTDAAKGTVDVLLDFK
Ga0099829_1086331513300009038Vadose Zone SoilIASSNVFDKTKFEELLVKLQSHREQVFGELPVHYETVGHFLQTDPGKRAVDVLLDFK*
Ga0099829_1118911123300009038Vadose Zone SoilAGAIFDKAKFEDLLAKLQTHQEQVFGELPVHYENVGHWLQTDAGKNTVDVLLDFK*
Ga0099829_1171461413300009038Vadose Zone SoilKFEELLVKLQSHREQVFGELPVHYETVGHFLQTDPGKHTVDVLLDFK*
Ga0099828_1003029713300009089Vadose Zone SoilFEELLAKLQTHQEQVFGELPVHYENVGHWLQTDGGKGTVDVLLDFK*
Ga0099828_1177841913300009089Vadose Zone SoilAWPIAAGDIFDKAKYEEILSKLQTHEEQIFGELPLHYETVGHWLQTDAAKATVDVLLDFK
Ga0099827_1115852113300009090Vadose Zone SoilLFDKIKFEELLVKLQSQREQVFGELPVHYETVGHFLQTDPGKRTVDVLLDFK*
Ga0116216_1084978613300009698Peatlands SoilEILVKLQSHQEQVFGELPLHYETVGHWLQTDAATATVDVLLDFK*
Ga0126379_1332146723300010366Tropical Forest SoilTKYEEVLTKLQLHQEQIFGELPLHYETVGHWLQPDARTGTVDVLLDFK*
Ga0126383_1008786813300010398Tropical Forest SoilESWLTPAGGLFDKAAFEELLTKLQTHREKVFGDLPVHYDNVGHWLQTDPTRATVDILLDFK*
Ga0150983_1218550413300011120Forest SoilEEILTKLQAHQEQVFGELPLHYETVGHWLQTDPAKSTVDVLLDFK*
Ga0137392_1131111613300011269Vadose Zone SoilDLLAKLQTHQEQVFGELPVHYENVGHWLQTDTGKNTVDVLLDFK*
Ga0137389_1026262013300012096Vadose Zone SoilGAIFDKAKFEDLLAKLQTHQEQVFGELPVHYENVGHWLQTDAGKNTVDVLLDFK*
Ga0137389_1098599123300012096Vadose Zone SoilFDKAKFEELLAKLQGHQEQVFGELPVHYDNVGHWLQTDAGKGTVDVLLDFK*
Ga0137388_1108987113300012189Vadose Zone SoilAGAIFDKAKFEDLLAKLQTHQEQVFGELPVHYENVGHWLHTDASKNTVDVLLDFK*
Ga0137388_1120496413300012189Vadose Zone SoilYEEILSKLQTHQEQIFGELPLHYETVGHWLQTDAAKATVDVLLDFK*
Ga0137364_1046307713300012198Vadose Zone SoilPFAAGEIFDKVKFEDLLAKLQTHQEQVFGELPVHYENVGHWLQTDAGNNTVDVLLDFK*
Ga0137382_1044431123300012200Vadose Zone SoilEELLAKLQTHQEQVFGELPVHYENVGHWLQTDAGKNTVDVLLDFK*
Ga0137399_1058009423300012203Vadose Zone SoilFDKAKFEELLAKLQTHQEQVFGELPVHYENVGHWLQTDAGNGTVDVLLDFK*
Ga0137399_1082208223300012203Vadose Zone SoilFDKAKFEELLVKLQSHREQVFGELPVHYETVGHFLQTDPGKHAVDVLLDFK*
Ga0137362_1081649313300012205Vadose Zone SoilHAAWPIAAGEFFDKAKFEELLTKLQTHQEQVFGELPVHYDNVGHWLQTDAAKGTVDVLLDFK*
Ga0137381_1070122913300012207Vadose Zone SoilWPIAAGDIFDKAKYEEILSKLQTHQEQIFGELPLHYETVGHWLQTDVAKATVDVLLDFK*
Ga0137376_1125696523300012208Vadose Zone SoilFEELLAKLQTHQEQVFGELPVHYENVGHWLQTDAGKNTVDVLLDFK*
Ga0137378_1114872323300012210Vadose Zone SoilDIFDKVKYEEILSKLQTHQEQIFGELPLHYETVGHWLQTDAAKATVDVLLDFK*
Ga0137377_1111036523300012211Vadose Zone SoilVFDKSKFEELLVKLQTHQEQVFGELPVHYENVGHWLQPDASKNTVDVLLDFK*
Ga0137370_1016890313300012285Vadose Zone SoilKVKFEDLLAKLQTHQEQVFGELPVHYENVGHWLQTDVGNNTVDVLLDFK*
Ga0137370_1067135313300012285Vadose Zone SoilAWPFAAGEIFDKVKFEDLLAKLQTHQEQVFGELPVHYENVGHWLQTDAGNNTVDVLLDFK
Ga0137387_1113885413300012349Vadose Zone SoilILSKLQTHQEQIFGELPLHYETVGHWLQTDAAKATVDVLLDFK*
Ga0137387_1119026723300012349Vadose Zone SoilLTKLQLHQEQIFGEVPLHYEGVGHWLEPDSSTGTVDVLLDFK*
Ga0137360_1028037633300012361Vadose Zone SoilFDKAKFEELLAKLQTHQEQVFGELPLHYDNVGHWLQTDASKGTVDVLLDFK*
Ga0137361_1196599823300012362Vadose Zone SoilDKAKFEDLLAKLQTHQEQVFGELPVHYENVGHWLQTDAGKNTVDVLLDFK*
Ga0137394_1074624613300012922Vadose Zone SoilELLVKLQSHREQVFGELPVHYEAVGHFLQTDADKRTVDVLLDFK*
Ga0137394_1129778013300012922Vadose Zone SoilKTKFEELLVKLQSHREQVFGELPVHYETVGHFLQADPDKRTVDVLLDFK*
Ga0137413_1065710413300012924Vadose Zone SoilKFEELLIKLQSHQEQIFGELPVHYENVGHWLQTDPGKLTVDVLLDFK*
Ga0134081_1012666413300014150Grasslands SoilLHAAWPIATGELFDKAKFEELLSKLQTRQEQVFGELPVHYDNVGHWLQTDAANGTVDVLLDFK*
Ga0181522_1048002923300014657BogFNKSVFEELLAKLETHPAKIFGDLPLHYDSVGHWLQTDPQQGTVDVLLDFKH*
Ga0137412_1032656623300015242Vadose Zone SoilVHTAWPFPSGAVFDKAKFEELLIKLQSHQEQIFGELPVHYENVGHWLQTDPGKLTVDVLLDFK*
Ga0137409_1094065213300015245Vadose Zone SoilNLFDKIKFEELLVKLQSHRGQVFGELPVHYETVGHFLQTDPGKRTVDVLLDFK*
Ga0182038_1099623413300016445SoilIPPGEIFDKTKYEEVLTKLQLHQEQIFGELPLHYETVGHWLQPDARTGTVDVLLDFK
Ga0187814_1036588023300017932Freshwater SedimentFDKAKYEEILVKLQSHQEQIFGELPLHYDTVGHWLQTDSSSATVDVLLDFK
Ga0187781_1019216013300017972Tropical PeatlandWPIAAGDIFDKTKYEEMLIKLQNHQEQVFGELPLHYDTVGHWLQTDDATATVDVLLDFK
Ga0066662_1000050613300018468Grasslands SoilIFDKTKYEEVLTKLQLHQEQIFGELPLHYESVGHWLEPDSSTATVDVLLDFK
Ga0193728_131477223300019890SoilFDKTKYEDILLKLQVHPEQIFVDLPVHYESVGHWLQTDANTGMVDVLLDFK
Ga0179594_1010475423300020170Vadose Zone SoilIAAGELFDKAKFEDLLTKLQSHQEQVFGELPVHYDNVGHWLQIDAAKGTVDVLLDFK
Ga0179592_1021235013300020199Vadose Zone SoilFTAGEIFDKAKFEELLAKLQSRQEQVFGELPVHYETVGHWLQTDAGKSTVDVLLDFK
Ga0210399_1088095923300020581SoilWPFVPGEVFDKAKFELLLIKLQAHQEQVFGEMPVHYDNVGHWLQTDAGKSTVDVLLDFK
Ga0210401_1140939523300020583SoilRKVYAAWTIASGNVFDKAKFEELLQKLQVHQEQVFGELPVHYDNVGHWLQTDPAKATVDILLDFK
Ga0210404_1000863213300021088SoilRKLQNVWPFPAGAIFDKAKFEDLLAKLQTHQEQVFGELPVHYENVGHWLQTDTGKNTVDVLLDFK
Ga0210405_1099575813300021171SoilILSGDVFDKTKFEDILLKLQVHKEQVFVDLPIHYDSVGHWLQTDPETGNADVLLDFK
Ga0210408_1015015633300021178SoilWLIPTGGIFDKAQFEDLLTKLETHKEKVFGELPVHYDTVGHWLQPDAARNTVDVLLDFK
Ga0210387_1065517123300021405SoilGEIFDKAKYEEYLTKLQVHPERIFGDLPIHYDTVGHWLQTDATKGTVDVLLDFK
Ga0210384_1045290713300021432SoilKFEELLAKLQMHQEQVFGELPLHYENVGHWLQTDEGKRTVDVLLDFK
Ga0210392_1121245123300021475SoilAGERRILQAWPMVAGDIFDKAKYEDILTKLQVHPAQIFGDLPLHYENVGHWLQTEPASSTVNVLLDFK
Ga0210409_1106994213300021559SoilKAKFEELLAKLQARQELVFGELPVHYDNVGHWLQTDAGKGTVDVLLDFK
Ga0179591_104988133300024347Vadose Zone SoilLQAAWPFPAGAIFDKAKFEELLAKLQMHQEQVFGELPLHYENVGHWLQTDARRGTVDVLLDFK
Ga0207665_1129735213300025939Corn, Switchgrass And Miscanthus RhizosphereKLHAAWPFPAGAVFDKAKFEELLIKLQTHQEQVFGELPVHYENVGHWLQTDPNKYTVDVLLDFK
Ga0209350_113312523300026277Grasslands SoilNKYEDVLTKLQLHQEQIFGELPLHYESVGHWLQADANTGTVDVLLDFK
Ga0209055_100747513300026309SoilAGELFDKAKFEELLTKLQSHQELVFGELPVHYDNVGHWLQTDTAKGTVDVLLDFK
Ga0209055_103098133300026309SoilAGELFDKAKFEELLTKLQSHQELVFGELPVHYDNVGHWLQTDAAKGTVDVLLDFK
Ga0209687_120387213300026322SoilAKFEELLTKLQSHQELVFGELPVHYDNVGHWLQTDAAKGTVDVLLDFK
Ga0209802_113735713300026328SoilRKLHAAWPIAAGDIFDKAKFEELLAKLQTHQEQVFGELPLHYENVGHWLQTDASKGTVDVLLDFK
Ga0209802_128374313300026328SoilERKLHAAWPITAGELFDKAKFEELLTKLQSHQELVFGELPVHYDNVGHWLQTDAAKGTVDVLLDFK
Ga0179587_1045617023300026557Vadose Zone SoilFDKAKFEDLLAKLQTHQEQVFGELPVHYENVGHWLQTDTGKNTVDVLLDFK
Ga0208984_102800223300027546Forest SoilKFEDILLKLQVHREQIFVDLPIHYESVGHWLQTDPETGNVDVLLDFK
Ga0209525_108277023300027575Forest SoilKYEDILLKLQVHRDQIFVDLPVHYESVGHWLQTDADTGMVDVLLDFK
Ga0209422_100320953300027629Forest SoilVFDKTKYEDILLKLQVHREQIFVDLPVHYESVGHWLQTDADTGMVDVLLDFK
Ga0209625_105460423300027635Forest SoilSGDVFDKTKYEDILLKLQVHREQIFVDLPVHYESVGHWLQTDADTGMVDVLLDFK
Ga0209117_115719513300027645Forest SoilLFDKTLYEEFLTKLQTSPAKVFGDLPVHYDNVGHWLQPDESKNTVDVLLDFK
Ga0209217_114468913300027651Forest SoilKYEDILLKLQVHREQIFVDLPVHYESVGHWLQTDADTGMVDVLLDFK
Ga0209588_109670613300027671Vadose Zone SoilNVWPFPAGAIFDKAKFEELLAKLQTHQEQVFGELPVHYENVGHWLQTDTSKNTVDVLLDF
Ga0209588_122299823300027671Vadose Zone SoilIAAGDIFDKAKFEELLAKLQTHQEQVFGELPLHYENVGHWLQTDASKGTVDVLLDFK
Ga0209248_1017549413300027729Bog Forest SoilFEEFLIKLQTHRTKVFGDLPLHYDGMGHWLQTDTQQGTVDVLLDFKQ
Ga0208989_1009096523300027738Forest SoilDKAKFEELLAKLQTHQEQVFGELPVHYENVGHWLQTDAGKNTVDVLLDFK
Ga0209166_1012806533300027857Surface SoilNQLFDKTKFEAYLSHLQNKPAQIFGELPVHYENVGHWLRTDPSKGTVDVLLDFK
Ga0209701_1018193613300027862Vadose Zone SoilKLHAAWPIAAGDIFDKAKFEELLAKLQTHQEQVFGELPLHYDNVGHWLQTDASKGTVDVLLDFK
Ga0209701_1022431213300027862Vadose Zone SoilFDKTRYEEVLTKLQSHQEQIFGELPLHYDAVGHWLQTDASTATVDVLLDFK
Ga0209701_1071392013300027862Vadose Zone SoilKLSAAWPIAAGEVFDKSQFEELLAKLQTHQEQVFGELPVHYENVGHWLQTDAAKGTVDVLLDFK
Ga0209283_1032809423300027875Vadose Zone SoilDKAKFEELLAKLQTHQEQVFGELPVHYENVGHWLQTDAGKSTVDVLLDFK
Ga0209590_1081127423300027882Vadose Zone SoilIFDKVKFEDLLAKLQTHREQVFGELPVHYENVGHWLQTDAGKNTVDVLLDFK
Ga0209168_1003640713300027986Surface SoilAPGEVFDKGKYEDLLTRLETHKERVFGDLPLHYETVGHWLQTDAANATVDVLLDFK
Ga0265338_1094626813300028800RhizosphereFEEFLTKLEVHPAKIFGELPVHYEGVGHWLQTDPKQGTVDVLLDFKH
Ga0311353_1036294213300030399PalsaLFDKSLFEELLAKLETHPSKIFGDLPLHYDSVGHWLQTDPQQGTVDVLLDFKH
Ga0318560_1010089813300031682SoilIFDKTKYEEVLMKLQLHQEQIFGELPLHYESVGHWLEPDAGTGTVDVLLDFK
Ga0306917_1123638423300031719SoilEVLTKLQLHQEQIFGELPLHYETVGHWLQPDARTGTVDVLLDFK
Ga0307469_1243256613300031720Hardwood Forest SoilNLFDKIKFEGLLVKLQSHREQVFGELPVHYETVGHFLQTDPAKRTVDVLLDFK
Ga0307468_10182901923300031740Hardwood Forest SoilFEGLLVKLQSHREQVFGELPVHYETVGHFLQTDPAKRTVDVLLDFK
Ga0307475_1015462933300031754Hardwood Forest SoilVFDKTKYEDILLKLQVHREQIFVDLPVHYESVGHWLQTDADTGIVDVLLDFK
Ga0318565_1051373823300031799SoilIPQGEIFDKTKYEEVLMKLQLHQEQIFGELPLHYESVGHWLEPDAGTGTVDVLLDFK
Ga0307478_1040228213300031823Hardwood Forest SoilEELLAKLQTHQEQVFGELPVHYDNVGHWLQTDSTKNTVDVLLDFK
Ga0306921_1089573823300031912SoilQGEIFDKTKYEEVLMKLQLHQEQIFGELPLHYESVGHWLEPDAGTGTVDVLLDFK
Ga0307479_1003681113300031962Hardwood Forest SoilAPGETFDKAKFEELLAKLQTHQEQVFGELPVHYDNVGHWLQTDSTKNTVDVLLDFK
Ga0307479_1014614113300031962Hardwood Forest SoilFDKAKYEEVLTKLQSHQEQIFGELPLHYDTVGHWLQTNAGTGTVDVLLDFK
Ga0307479_1120244413300031962Hardwood Forest SoilKFEELLAKLQTRQEQVFGELPVHYETVGHWLQTDAGKSTVDVLLDFK
Ga0310911_1049457313300032035SoilDKVYFERFLTQLESHRETIFRDLPVHYDTVGHWLQTDAAKGTVDVLLDFK
Ga0307471_10258411823300032180Hardwood Forest SoilAWPFAAGGIFDKAKFEELLAKLQTRQELVFGELPVHYDSVGHWLQTDAGKGTVDVLLDFK


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