Metagenome / Metatranscriptome Family F076385

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F076385
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	62 residues
Representative Sequence	MSKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR
Number of Associated Samples	112
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.36 %
% of genes near scaffold ends (potentially truncated)	26.27 %
% of genes from short scaffolds (< 2000 bps)	86.44 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (95.763 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (17.797 % of family members)
Environment Ontology (ENVO)	Unclassified (24.576 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.847 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.62% β-sheet: 0.00% Coil/Unstructured: 34.38%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF13561	adh_short_C2	8.47
PF00296	Bac_luciferase	4.24
PF00011	HSP20	3.39
PF03401	TctC	1.69
PF00664	ABC_membrane	0.85
PF00106	adh_short	0.85
PF04226	Transgly_assoc	0.85
PF03006	HlyIII	0.85
PF01527	HTH_Tnp_1	0.85
PF01841	Transglut_core	0.85
PF00903	Glyoxalase	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	4.24
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	3.39
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.69
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.85
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.76 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.76 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.76 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	86.44 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	85.59 %
Unclassified	root	N/A	4.24 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	75.42 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.63 %
Unclassified	root	N/A	4.24 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	75.42 %
Unclassified	root	N/A	4.24 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.85 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	75.42 %
Unclassified	root	N/A	4.24 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	75.42 %
Unclassified	root	N/A	4.24 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.85 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	0.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	75.42 %
Unclassified	root	N/A	4.24 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.85 %
Methylocystis sp. B8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. B8	0.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459016\|G1P06HT01ERIR6	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
2170459021\|G14TP7Y01CE3ZN	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300000789\|JGI1027J11758_12912519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1052	Open in IMG/M
3300002680\|Ga0005483J37271_106841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M
3300002906\|JGI25614J43888_10004851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4294	Open in IMG/M
3300004139\|Ga0058897_11028740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300004463\|Ga0063356_103882120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	644	Open in IMG/M
3300004480\|Ga0062592_101032856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	754	Open in IMG/M
3300004631\|Ga0058899_12061519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	629	Open in IMG/M
3300004643\|Ga0062591_102316445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300005167\|Ga0066672_10037359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2707	Open in IMG/M
3300005172\|Ga0066683_10153855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1413	Open in IMG/M
3300005176\|Ga0066679_10191828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1299	Open in IMG/M
3300005177\|Ga0066690_10548336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	774	Open in IMG/M
3300005178\|Ga0066688_10378833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	917	Open in IMG/M
3300005180\|Ga0066685_10968893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	564	Open in IMG/M
3300005187\|Ga0066675_11029490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300005347\|Ga0070668_100873102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	803	Open in IMG/M
3300005356\|Ga0070674_100598866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	931	Open in IMG/M
3300005434\|Ga0070709_10626599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	830	Open in IMG/M
3300005435\|Ga0070714_100538643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1117	Open in IMG/M
3300005436\|Ga0070713_100204871	All Organisms → cellular organisms → Bacteria	1783	Open in IMG/M
3300005440\|Ga0070705_100283578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1179	Open in IMG/M
3300005445\|Ga0070708_100144689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2207	Open in IMG/M
3300005445\|Ga0070708_101124431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	735	Open in IMG/M
3300005536\|Ga0070697_101462927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	610	Open in IMG/M
3300005547\|Ga0070693_101094977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300005549\|Ga0070704_100352607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1243	Open in IMG/M
3300005552\|Ga0066701_10112288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1604	Open in IMG/M
3300005554\|Ga0066661_10335543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	927	Open in IMG/M
3300005560\|Ga0066670_10346677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	905	Open in IMG/M
3300005841\|Ga0068863_101952320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597	Open in IMG/M
3300005843\|Ga0068860_100521718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1188	Open in IMG/M
3300006031\|Ga0066651_10804214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300006034\|Ga0066656_10159123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1417	Open in IMG/M
3300006038\|Ga0075365_10352961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1037	Open in IMG/M
3300006049\|Ga0075417_10097021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1333	Open in IMG/M
3300006058\|Ga0075432_10483617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300006173\|Ga0070716_101836212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300006175\|Ga0070712_100766094	Not Available	826	Open in IMG/M
3300006844\|Ga0075428_101043573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	864	Open in IMG/M
3300006845\|Ga0075421_101805168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	658	Open in IMG/M
3300006852\|Ga0075433_10881903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	781	Open in IMG/M
3300006853\|Ga0075420_100844150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	789	Open in IMG/M
3300006871\|Ga0075434_100292999	Not Available	1647	Open in IMG/M
3300006903\|Ga0075426_11287784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300006904\|Ga0075424_102172053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300006954\|Ga0079219_11558489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	602	Open in IMG/M
3300006969\|Ga0075419_10579674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	786	Open in IMG/M
3300007255\|Ga0099791_10072579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1561	Open in IMG/M
3300009038\|Ga0099829_10031278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3795	Open in IMG/M
3300009089\|Ga0099828_10317100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1403	Open in IMG/M
3300009090\|Ga0099827_10027250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4071	Open in IMG/M
3300009100\|Ga0075418_10940082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	935	Open in IMG/M
3300009553\|Ga0105249_10323159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1555	Open in IMG/M
3300010159\|Ga0099796_10029699	All Organisms → cellular organisms → Bacteria	1767	Open in IMG/M
3300010303\|Ga0134082_10545572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300010329\|Ga0134111_10538631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M
3300010373\|Ga0134128_10357946	All Organisms → cellular organisms → Bacteria	1631	Open in IMG/M
3300010403\|Ga0134123_11048290	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300011120\|Ga0150983_10977555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	735	Open in IMG/M
3300011120\|Ga0150983_12366656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	697	Open in IMG/M
3300012189\|Ga0137388_10044431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3563	Open in IMG/M
3300012198\|Ga0137364_10959538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	647	Open in IMG/M
3300012199\|Ga0137383_10259012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1274	Open in IMG/M
3300012204\|Ga0137374_10090864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2916	Open in IMG/M
3300012208\|Ga0137376_10138867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2085	Open in IMG/M
3300012285\|Ga0137370_10517665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	732	Open in IMG/M
3300012351\|Ga0137386_10321701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1113	Open in IMG/M
3300012357\|Ga0137384_10342009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. B8	1240	Open in IMG/M
3300012923\|Ga0137359_10683607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	895	Open in IMG/M
3300012925\|Ga0137419_10926943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	718	Open in IMG/M
3300012957\|Ga0164303_10524107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	764	Open in IMG/M
3300012960\|Ga0164301_10037038	All Organisms → cellular organisms → Bacteria	2390	Open in IMG/M
3300012984\|Ga0164309_10991514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	692	Open in IMG/M
3300012985\|Ga0164308_10433876	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300012985\|Ga0164308_10612743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	928	Open in IMG/M
3300012987\|Ga0164307_10045633	All Organisms → cellular organisms → Bacteria	2483	Open in IMG/M
3300012988\|Ga0164306_10333052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1119	Open in IMG/M
3300012989\|Ga0164305_10056983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2319	Open in IMG/M
3300012989\|Ga0164305_10064491	Not Available	2211	Open in IMG/M
3300013297\|Ga0157378_10556448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1153	Open in IMG/M
3300013308\|Ga0157375_12239264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	651	Open in IMG/M
3300015242\|Ga0137412_10240244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1436	Open in IMG/M
3300015264\|Ga0137403_10646178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	921	Open in IMG/M
3300016387\|Ga0182040_11676018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300018433\|Ga0066667_10418357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1088	Open in IMG/M
3300018468\|Ga0066662_10781669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	923	Open in IMG/M
3300018482\|Ga0066669_10376315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1192	Open in IMG/M
3300018482\|Ga0066669_11061779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	731	Open in IMG/M
3300020199\|Ga0179592_10133278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1140	Open in IMG/M
3300020579\|Ga0210407_10620115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	842	Open in IMG/M
3300021088\|Ga0210404_10160048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1186	Open in IMG/M
3300021178\|Ga0210408_10258195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1388	Open in IMG/M
3300021178\|Ga0210408_10881185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	697	Open in IMG/M
3300021403\|Ga0210397_11294025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	566	Open in IMG/M
3300021405\|Ga0210387_10745991	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300021475\|Ga0210392_10098319	All Organisms → cellular organisms → Bacteria	1920	Open in IMG/M
3300021479\|Ga0210410_10292800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1461	Open in IMG/M
3300024347\|Ga0179591_1025433	Not Available	3015	Open in IMG/M
3300025898\|Ga0207692_10032567	All Organisms → cellular organisms → Bacteria	2506	Open in IMG/M
3300025906\|Ga0207699_10103310	Not Available	1812	Open in IMG/M
3300025915\|Ga0207693_10490891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	959	Open in IMG/M
3300025934\|Ga0207686_11051597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300026295\|Ga0209234_1071675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1318	Open in IMG/M
3300026304\|Ga0209240_1011882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3309	Open in IMG/M
3300026309\|Ga0209055_1270769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529	Open in IMG/M
3300026361\|Ga0257176_1040664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	719	Open in IMG/M
3300026371\|Ga0257179_1014288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	868	Open in IMG/M
3300026532\|Ga0209160_1145561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1102	Open in IMG/M
3300026550\|Ga0209474_10335866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	859	Open in IMG/M
3300026552\|Ga0209577_10319798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1152	Open in IMG/M
3300027310\|Ga0207983_1009595	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300027846\|Ga0209180_10297042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	926	Open in IMG/M
3300027875\|Ga0209283_10702085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300027909\|Ga0209382_10236975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2077	Open in IMG/M
3300028878\|Ga0307278_10078318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1489	Open in IMG/M
3300031231\|Ga0170824_114194899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	640	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.66%
Host-Associated	Host-Associated	18.64%
Engineered	Engineered	1.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.66%
Plants	Host-Associated → Plants	18.64%
Solid Waste	Engineered → Solid Waste	1.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.54%
Grass	Engineered → Solid Waste → Grass	1.69%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.56%
Loam	Environmental → Terrestrial → Soil → Loam	16.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.54%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.69%
Composting	Engineered → Solid Waste → Grass → Composting	1.69%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.51%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.24%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.69%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	1.69%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.02%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.47%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.24%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.69%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.85%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459016	Litter degradation ZMR2	Engineered	Open in IMG/M
2170459021	Litter degradation NP4	Engineered	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002680	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF132 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027310	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2ZMR_01608680	2170459016	Switchgrass, Maize And Mischanthus Litter	MSKADQFRQYAEEALRWARQSRTEKXKQAYTNLALTWMQAAVQSDHIFGVNDSAPGRN
4NP_02071630	2170459021	Switchgrass, Maize And Mischanthus Litter	MSKADQFRQYAEEALRWARQSKTEREKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR
JGI1027J11758_129125193	3300000789	Soil	MGHMAHEAMRWVRQSKXENEKQVLTELAGTWMQAAMHSERFSVNDSPPIATTL*
Ga0005483J37271_1068411	3300002680	Forest Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSAPSRQLTAGGR*
JGI25614J43888_100048514	3300002906	Grasslands Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0058897_110287401	3300004139	Forest Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSTPGRQLTAGGR*
Ga0063356_1038821203	3300004463	Arabidopsis Thaliana Rhizosphere	EEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0062592_1010328562	3300004480	Soil	MSKADQFRQYAEEALCWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0058899_120615193	3300004631	Forest Soil	QFRQYAEEAMRWALRSNTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPSRQLTAGGR*
Ga0062591_1023164451	3300004643	Soil	EALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSPPGRQLTAGGR*
Ga0066672_100373592	3300005167	Soil	MPKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0066683_101538552	3300005172	Soil	MPKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSDHIFGVNDSAPGRQLTAGGR*
Ga0066679_101918281	3300005176	Soil	KADQFRQYAEEALRWARQSRTEKEKQAYTNLALTWMQAAVQSDHIFGVNDSAPGRQLTAGGR*
Ga0066690_105483361	3300005177	Soil	MPKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQVAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0066688_103788332	3300005178	Soil	MSKADQFRQYAEEALRWARQSRTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0066685_109688932	3300005180	Soil	MPKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSDHIFGVNDSAPGRQLTAGGR
Ga0066675_110294902	3300005187	Soil	MTKPNQFRQYAEEALRWGRQAKTEKEKKAYAELALTWRQAAVQSEEIFGVNDSPPETNIL
Ga0070668_1008731022	3300005347	Switchgrass Rhizosphere	MSKVDQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0070674_1005988662	3300005356	Miscanthus Rhizosphere	MSKVDQFRQYAEEALRWARQSKTEKDKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0070709_106265991	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0070714_1005386433	3300005435	Agricultural Soil	SKVDQFRQYAEEALRWARQSKTQKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTTGGR*
Ga0070713_1002048713	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSKVDQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTTGGR*
Ga0070705_1002835781	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSKVDQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQVAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0070708_1001446893	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSKADQFRQYAEEALRWARQSRTEKEKQAYTNLALTWMQAAVQSDHIFGVNDSAPGRQLTAGGR*
Ga0070708_1011244312	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MGTDSAAKADSESAEEAMRWARQSKTEKERQALIELACTWTQAAVQSEHIFGVNDSPPEHRAL*
Ga0070697_1014629272	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSKADQFRQYADEAMRWARQSKTENEKQVLTELAGTWMQAAMHSERFSVNDSPPIATAL*
Ga0070693_1010949771	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MSKVDQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0070704_1003526072	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSKVDQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSPPGRQLTAGGR*
Ga0066701_101122884	3300005552	Soil	MPKADQFRQYAEEALRWARQSKTEKEKQAYTDLSLTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0066661_103355432	3300005554	Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQVAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0066670_103466772	3300005560	Soil	MSKPNQFRQYAEEALRWGRQAKTEKEKKAYAELALTWRQAAVQSEEIFGVNDSPPETNIL
Ga0068863_1019523202	3300005841	Switchgrass Rhizosphere	MSKVDQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHTFGVNDSPPGRQLTAGGR*
Ga0068860_1005217184	3300005843	Switchgrass Rhizosphere	MSKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTTGGR*
Ga0066651_108042141	3300006031	Soil	KPNQFRQYAEEALRWGRQAKTEKEKKAYAELALTWRQAAMQSEEIFGVNDSPPETNIL*
Ga0066656_101591232	3300006034	Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSDHIFGVNDSAPGRQLTAGGR*
Ga0075365_103529613	3300006038	Populus Endosphere	MSKADHFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0075417_100970212	3300006049	Populus Rhizosphere	MSKPDQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFAVNDSAPGRQLTAGGR*
Ga0075432_104836172	3300006058	Populus Rhizosphere	MSKVDPFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0070716_1018362121	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSKVDQFRQYAEEALRWARQSKTQKEKQAYTDLALTWMQAAVQSEHTFGVNDSPPGRQLTAGGR*
Ga0070712_1007660941	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSKVDQFRQWAFQSKTEKERQAYIELARTWTQAALHSEHIFG
Ga0075428_1010435731	3300006844	Populus Rhizosphere	MSKVDQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFAVNDSAPGRQLTAGGR*
Ga0075421_1018051681	3300006845	Populus Rhizosphere	MSKPDQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0075433_108819031	3300006852	Populus Rhizosphere	DQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR
Ga0075420_1008441504	3300006853	Populus Rhizosphere	SPINSDNMPKKALQWARQSKTENEKQALIELARTWTQAAVQGEHIFGVNDNAPGRQLTAGGR*
Ga0075434_1002929994	3300006871	Populus Rhizosphere	FRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTTGGR*
Ga0075426_112877841	3300006903	Populus Rhizosphere	MSKADQFRQYAEEALRWARQSKTEKEKQAYANLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0075424_1021720532	3300006904	Populus Rhizosphere	MTKAGQFRQYAEEATRWAFQSKTEKEKQAYTDLALTWMQVAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0079219_115584893	3300006954	Agricultural Soil	ADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDNAPGRQLTAGGR*
Ga0075419_105796741	3300006969	Populus Rhizosphere	MPKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGI*
Ga0099791_100725792	3300007255	Vadose Zone Soil	MSKADQFRQYAEEALRWARQSKTEKKQAYTNLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0099829_100312786	3300009038	Vadose Zone Soil	MPKADQFRQYAEEALRWARQSKTEKKQAYTNLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0099828_103171004	3300009089	Vadose Zone Soil	MPKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWTQAAVQSEHIFGVNDSAPGRQLMAGGR*
Ga0099827_100272505	3300009090	Vadose Zone Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSAPGRQLMAGGR*
Ga0075418_109400823	3300009100	Populus Rhizosphere	MSKPDQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFAVNDRAPGRQLTAGGR*
Ga0105249_103231594	3300009553	Switchgrass Rhizosphere	SKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSAPGRQLTTGGR*
Ga0099796_100296994	3300010159	Vadose Zone Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQRAHNFGVNDSAPGRQLTAGGR*
Ga0134082_105455721	3300010303	Grasslands Soil	MTKPNQFRQYAEEALRWGRQAKTEKEKKAYAELALTWRQAAVQSEEIFGVNDSPRETNVL
Ga0134111_105386311	3300010329	Grasslands Soil	RRLPMSKADQFRQYAEEALRWARQSRTEKEKQAYTNLALTWMQAAVQSDHIFGVNDSAPGRQLTAGGR*
Ga0134128_103579462	3300010373	Terrestrial Soil	MSKVDQFRQYAEEALRWARQSKTQKEKQAYTDFALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0134123_110482902	3300010403	Terrestrial Soil	MSKVDQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAP
Ga0150983_109775551	3300011120	Forest Soil	MSKVDQFRQYAEEALRWARQSKTQKEKQAYTDLALTWMQAAVQSEHIFGVNDSPPGRQLTAGGR*
Ga0150983_123666563	3300011120	Forest Soil	MSKADEFRQYAEEALRWARQSKTEREKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRHLAAGGR*
Ga0137388_100444312	3300012189	Vadose Zone Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWTQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0137364_109595382	3300012198	Vadose Zone Soil	EEALRWARQSKTENEKQAYTDLSLTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0137383_102590121	3300012199	Vadose Zone Soil	MSKADQFRQYAEEALRWARQSKTENEKQAYTDLSLTWMQVAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0137374_100908644	3300012204	Vadose Zone Soil	MSKADEFRQYAEEAMRWARRSKNEKEQLALIELARTWTQAALHRESTAAAVNYSPPEGCPKSTTSVLS*
Ga0137376_101388673	3300012208	Vadose Zone Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTDLSLTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0137370_105176652	3300012285	Vadose Zone Soil	MSKADQFREYAEEAMRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSPPEHRAL
Ga0137386_103217013	3300012351	Vadose Zone Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVTDSAPGRQLTAGGR*
Ga0137384_103420091	3300012357	Vadose Zone Soil	MRKADQFRQYAEEAMRWALRSHTEKEKQAYTDLALTWTQAAVQSEHIFGVNDSAPAARA
Ga0137359_106836071	3300012923	Vadose Zone Soil	MPKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQVAVQSEHIFGVNDSAPGPPFF
Ga0137419_109269431	3300012925	Vadose Zone Soil	MSKADQFRQYAEEALRWARQSKTEKKQAYTNLALTWMQAAVQSEHIFGVNDS
Ga0164303_105241072	3300012957	Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSPPGRQLTAGGR*
Ga0164301_100370382	3300012960	Soil	MSKVDQFRQYAEEALRWARQSKTQKEKQAYTDLALTWMQAAVQSEHIFGVNDSTPGRQLTAGGR*
Ga0164309_109915142	3300012984	Soil	MSKADQFRQYAEEALRWARQSKTQKEKQAYTDLALTWMQAAVQSEHIFGVNDSPPGRQLTAGGR*
Ga0164308_104338762	3300012985	Soil	MSKVDQFRQYAEEALRWARQSKTQKEKQAYTDLALTWMQAAVQSEHIFGVNDSPP
Ga0164308_106127431	3300012985	Soil	SLAIWRLPMSKVDQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0164307_100456331	3300012987	Soil	QYAEEAIRWARQAKTQKEKQAYTDLALTWMQAAVQSEHIFGVNDSPPGRQLTAGGR*
Ga0164306_103330522	3300012988	Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSPPGRQLTAGGR*
Ga0164305_100569834	3300012989	Soil	MSKVDQFRQYAEEALRWARQSKTEKEKQGYTDLALTWMQAAVQSEHIFGVNDSAPGRRLTAGGR*
Ga0164305_100644912	3300012989	Soil	MTKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGGNDSPPEARAVL*
Ga0157378_105564482	3300013297	Miscanthus Rhizosphere	MSKVDQFRQYAEEALRWARQSKTQKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR*
Ga0157375_122392641	3300013308	Miscanthus Rhizosphere	MSKVDQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSTPGRQLTAGGR*
Ga0137412_102402444	3300015242	Vadose Zone Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAEGR*
Ga0137403_106461782	3300015264	Vadose Zone Soil	MSKVDPFRQYADEAIRWAFQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSPPEQRAL
Ga0182040_116760182	3300016387	Soil	MSKADQFQQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPG
Ga0066667_104183572	3300018433	Grasslands Soil	MPKADQFRQYAEEALRWASQSKTEKEKQAYTDLALTWMQVAVQSEHIFGVNDRAPGRQLTAGGR
Ga0066662_107816691	3300018468	Grasslands Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTDLSLTWMQAAVQSEHIFGVNDSAPGRQLTAGGR
Ga0066669_103763153	3300018482	Grasslands Soil	MTKPNQFRQYAEEALRWGRQAKTEKEKKAYAELALTRRQAAMQSEEIFGVNDSPPETNIL
Ga0066669_110617792	3300018482	Grasslands Soil	MSKADQFRQYAEEALRWARQSRTEKEKQAYTDLSLTWMQAAVQSEHIFGVNDSAPGRQLTAGGR
Ga0179592_101332783	3300020199	Vadose Zone Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR
Ga0210407_106201153	3300020579	Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSPPGRQLTAGGR
Ga0210404_101600483	3300021088	Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSAPSRQLTAGGR
Ga0210408_102581951	3300021178	Soil	EEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSAPSRQLTAGGR
Ga0210408_108811852	3300021178	Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSAPG
Ga0210397_112940252	3300021403	Soil	MSKADEFRQYAEEALRWARQSKTEREKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRHLTAGGR
Ga0210387_107459911	3300021405	Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRHLTAGGR
Ga0210392_100983193	3300021475	Soil	MSKVDQFRQYGWARQSKTQKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR
Ga0210410_102928001	3300021479	Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHILGVNDSAPGRQLTAGGR
Ga0179591_10254334	3300024347	Vadose Zone Soil	MSKADQFRQYAEEAIRWAFQSKTEKERQASIELGRTWMQAALHSEHTFGVNDSPPEARAL
Ga0207692_100325672	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSKVDQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR
Ga0207699_101033101	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTTGGR
Ga0207693_104908911	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	RLPMSKADQFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTTGGR
Ga0207686_110515971	3300025934	Miscanthus Rhizosphere	MSKVDQFRQYAEEALRWARQSKTQKEKQAYTDLALTWMQAAVQSEHTFGVNDS
Ga0209234_10716753	3300026295	Grasslands Soil	MSKVDKFRQYAEEALRWARQSKTEKEKQAYTDLALTWMQAAVQSEHIFGVNDSAPGRQLTTGGR
Ga0209240_10118824	3300026304	Grasslands Soil	MSKADQFRQYAEEALRWARQSKTEKKQAYTNLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR
Ga0209055_12707691	3300026309	Soil	MPKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR
Ga0257176_10406641	3300026361	Soil	MSKADQFRQYAEEALRWARQSKTEKKQAYTNLALTWTQAAVQSEHIFGVNDSAPGRQLTAGGR
Ga0257179_10142881	3300026371	Soil	MSKADQFRQYAEEALRWARQSKTEKKQAYTNLALTWMQAAVQSEHIFSVNDSAPGRQLTAGGR
Ga0209160_11455611	3300026532	Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTDLSLTWMQAAVQSEHIFGVNDSAPGRQLTAGGRSDDTQ
Ga0209474_103358661	3300026550	Soil	MTKPNQFRQYAEEALRWGRQAKTEKEKKAYAELALTWRQAAMQSEEIFGVNDSPPETNIL
Ga0209577_103197982	3300026552	Soil	MSKADQFRQYAEEALRWARQSRTEKEKQAYTNLALTWMQAAVQSDHIFGVNDSAPGRQLTAGGR
Ga0207983_10095951	3300027310	Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSA
Ga0209180_102970421	3300027846	Vadose Zone Soil	MPKADQFRQYAEEALRWARQSKTEKKQAYTNLALTWMQAAVQSEHIFGVNDSAPGRQLTAGGR
Ga0209283_107020851	3300027875	Vadose Zone Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSAPGRQLMAGGR
Ga0209382_102369751	3300027909	Populus Rhizosphere	MSNAEPFRQYAEEALFWARQAKTEKEKQAYADLALTWTRAAVQSEHIFGVNDSPPEARAL
Ga0307278_100783182	3300028878	Soil	MSKVEQFRQNAEEALRWARQSKTEKEKQAYTDLALTWTQAAVQSEHIFGVNDSAPEARARHDDLSLRVS
Ga0170824_1141948992	3300031231	Forest Soil	MSKADQFRQYAEEALRWARQSKTEKEKQAYTNLALTWMQAAVQSEHIFGVNDSAPGRQL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076385

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences