Metagenome / Metatranscriptome Family F076309

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076309
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	70 residues
Representative Sequence	LDLIVETETLTPSLIAALCAARAQTMLICDRCQDPDEVVVATMEIPAMDETFTLCGGCTRELPRGFRVV
Number of Associated Samples	86
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	68.64 %
% of genes near scaffold ends (potentially truncated)	30.51 %
% of genes from short scaffolds (< 2000 bps)	84.75 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.695 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.797 % of family members)
Environment Ontology (ENVO)	Unclassified (27.966 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.542 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.59% β-sheet: 19.59% Coil/Unstructured: 60.82%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF12728	HTH_17	41.53
PF00441	Acyl-CoA_dh_1	1.69
PF02771	Acyl-CoA_dh_N	0.85
PF01695	IstB_IS21	0.85
PF00296	Bac_luciferase	0.85
PF02586	SRAP	0.85
PF01527	HTH_Tnp_1	0.85
PF00872	Transposase_mut	0.85
PF12161	HsdM_N	0.85
PF02518	HATPase_c	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	2.54
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.85
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.85
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.85
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
All Organisms	root	All Organisms	48.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
cellular organisms	root	All Organisms → cellular organisms	48.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	13.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.47 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	13.56 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.39 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.85 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	13.56 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	1.69 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.85 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.85 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	13.56 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.69 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.85 %
Sphingobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia	0.85 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	13.56 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.69 %
Sphingobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	0.85 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.85 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	13.56 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.69 %
unclassified Sphingobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales	0.85 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.85 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	13.56 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.69 %
Sphingobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium	0.85 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.85 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10331588	Not Available	940	Open in IMG/M
3300001593\|JGI12635J15846_10515286	Not Available	704	Open in IMG/M
3300001593\|JGI12635J15846_10758383	Not Available	557	Open in IMG/M
3300002245\|JGIcombinedJ26739_100270140	All Organisms → cellular organisms → Bacteria	1587	Open in IMG/M
3300004080\|Ga0062385_10119624	All Organisms → cellular organisms → Bacteria → Proteobacteria	1311	Open in IMG/M
3300004092\|Ga0062389_100750246	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1152	Open in IMG/M
3300004092\|Ga0062389_100785477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1131	Open in IMG/M
3300004092\|Ga0062389_101874480	Not Available	778	Open in IMG/M
3300004478\|Ga0068972_1191770	Not Available	500	Open in IMG/M
3300004635\|Ga0062388_100987710	Not Available	817	Open in IMG/M
3300004635\|Ga0062388_102770403	Not Available	517	Open in IMG/M
3300005610\|Ga0070763_10720786	Not Available	585	Open in IMG/M
3300005712\|Ga0070764_10334950	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	881	Open in IMG/M
3300006176\|Ga0070765_100198356	Not Available	1820	Open in IMG/M
3300006176\|Ga0070765_101635285	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	605	Open in IMG/M
3300006893\|Ga0073928_10087750	All Organisms → cellular organisms → Bacteria	2645	Open in IMG/M
3300006893\|Ga0073928_10244940	All Organisms → cellular organisms → Bacteria	1374	Open in IMG/M
3300006893\|Ga0073928_10385286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	1029	Open in IMG/M
3300006893\|Ga0073928_11209970	Not Available	509	Open in IMG/M
3300007255\|Ga0099791_10674654	Not Available	508	Open in IMG/M
3300007788\|Ga0099795_10094838	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1162	Open in IMG/M
3300007788\|Ga0099795_10211517	Not Available	822	Open in IMG/M
3300009521\|Ga0116222_1083325	All Organisms → cellular organisms → Bacteria	1379	Open in IMG/M
3300009521\|Ga0116222_1185931	Not Available	895	Open in IMG/M
3300009521\|Ga0116222_1388121	Not Available	607	Open in IMG/M
3300009522\|Ga0116218_1369650	Not Available	640	Open in IMG/M
3300009523\|Ga0116221_1390619	Not Available	605	Open in IMG/M
3300009632\|Ga0116102_1074654	Not Available	1013	Open in IMG/M
3300009637\|Ga0116118_1004998	All Organisms → cellular organisms → Bacteria	5705	Open in IMG/M
3300009646\|Ga0116132_1177466	Not Available	647	Open in IMG/M
3300009665\|Ga0116135_1141195	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	895	Open in IMG/M
3300009672\|Ga0116215_1033460	Not Available	2364	Open in IMG/M
3300009683\|Ga0116224_10148958	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300009839\|Ga0116223_10202050	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300010343\|Ga0074044_10602719	Not Available	717	Open in IMG/M
3300010379\|Ga0136449_102633189	Not Available	716	Open in IMG/M
3300010379\|Ga0136449_103633696	Not Available	584	Open in IMG/M
3300011270\|Ga0137391_11243592	Not Available	592	Open in IMG/M
3300012010\|Ga0120118_1139500	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	582	Open in IMG/M
3300012203\|Ga0137399_10580938	Not Available	942	Open in IMG/M
3300012361\|Ga0137360_10477141	Not Available	1059	Open in IMG/M
3300012685\|Ga0137397_10159511	Not Available	1673	Open in IMG/M
3300012927\|Ga0137416_10366872	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300013764\|Ga0120111_1034679	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1329	Open in IMG/M
3300014156\|Ga0181518_10047586	All Organisms → cellular organisms → Bacteria → Proteobacteria	2605	Open in IMG/M
3300014201\|Ga0181537_10082537	All Organisms → cellular organisms → Bacteria	2181	Open in IMG/M
3300014201\|Ga0181537_10383511	Not Available	964	Open in IMG/M
3300014201\|Ga0181537_10710325	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300014201\|Ga0181537_10789207	Not Available	644	Open in IMG/M
3300014968\|Ga0157379_10109016	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2487	Open in IMG/M
3300015052\|Ga0137411_1318950	Not Available	2547	Open in IMG/M
3300015241\|Ga0137418_10666777	Not Available	804	Open in IMG/M
3300015245\|Ga0137409_10092133	All Organisms → cellular organisms → Bacteria → Acidobacteria	2819	Open in IMG/M
3300017925\|Ga0187856_1009635	All Organisms → cellular organisms → Bacteria	5657	Open in IMG/M
3300017948\|Ga0187847_10750654	Not Available	551	Open in IMG/M
3300018037\|Ga0187883_10153931	All Organisms → cellular organisms → Bacteria	1183	Open in IMG/M
3300018057\|Ga0187858_10816330	Not Available	551	Open in IMG/M
3300019240\|Ga0181510_1411378	Not Available	636	Open in IMG/M
3300019258\|Ga0181504_1304017	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium	863	Open in IMG/M
3300019268\|Ga0181514_1490330	Not Available	523	Open in IMG/M
3300019888\|Ga0193751_1143425	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	864	Open in IMG/M
3300020199\|Ga0179592_10491093	Not Available	527	Open in IMG/M
3300021086\|Ga0179596_10621965	Not Available	548	Open in IMG/M
3300021171\|Ga0210405_10501706	Not Available	951	Open in IMG/M
3300021401\|Ga0210393_10101070	All Organisms → cellular organisms → Bacteria	2296	Open in IMG/M
3300021401\|Ga0210393_10175223	All Organisms → cellular organisms → Bacteria	1730	Open in IMG/M
3300021401\|Ga0210393_10709090	Not Available	820	Open in IMG/M
3300021401\|Ga0210393_11001902	Not Available	676	Open in IMG/M
3300021433\|Ga0210391_10904805	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300021477\|Ga0210398_11010249	Not Available	663	Open in IMG/M
3300021478\|Ga0210402_11964986	Not Available	511	Open in IMG/M
3300021479\|Ga0210410_10550520	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1028	Open in IMG/M
3300022507\|Ga0222729_1061185	Not Available	540	Open in IMG/M
3300022557\|Ga0212123_10046790	All Organisms → cellular organisms → Bacteria → Proteobacteria	4039	Open in IMG/M
3300022557\|Ga0212123_10117798	All Organisms → cellular organisms → Bacteria → Proteobacteria	2121	Open in IMG/M
3300022557\|Ga0212123_10399829	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300025453\|Ga0208455_1103136	Not Available	539	Open in IMG/M
3300025576\|Ga0208820_1007437	All Organisms → cellular organisms → Bacteria → Proteobacteria	4187	Open in IMG/M
3300026557\|Ga0179587_10578838	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	739	Open in IMG/M
3300027512\|Ga0209179_1112588	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	607	Open in IMG/M
3300027568\|Ga0208042_1006974	All Organisms → cellular organisms → Bacteria	3098	Open in IMG/M
3300027610\|Ga0209528_1135385	Not Available	541	Open in IMG/M
3300027625\|Ga0208044_1133889	Not Available	698	Open in IMG/M
3300027641\|Ga0208827_1060021	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300027652\|Ga0209007_1078705	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300027674\|Ga0209118_1217178	Not Available	511	Open in IMG/M
3300027678\|Ga0209011_1165412	Not Available	617	Open in IMG/M
3300027698\|Ga0209446_1069819	Not Available	895	Open in IMG/M
3300027795\|Ga0209139_10161454	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300027854\|Ga0209517_10212067	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1186	Open in IMG/M
3300027879\|Ga0209169_10058919	All Organisms → cellular organisms → Bacteria	1990	Open in IMG/M
3300027879\|Ga0209169_10078736	Not Available	1702	Open in IMG/M
3300027895\|Ga0209624_10044180	All Organisms → cellular organisms → Bacteria	2847	Open in IMG/M
3300027903\|Ga0209488_10230823	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1390	Open in IMG/M
3300027905\|Ga0209415_10140170	All Organisms → cellular organisms → Bacteria	2471	Open in IMG/M
3300027908\|Ga0209006_10112189	Not Available	2412	Open in IMG/M
3300027908\|Ga0209006_10688958	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300027908\|Ga0209006_10827272	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	748	Open in IMG/M
3300028536\|Ga0137415_10376313	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300028780\|Ga0302225_10185264	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300030623\|Ga0265392_1106369	Not Available	659	Open in IMG/M
3300030625\|Ga0210259_11656124	Not Available	513	Open in IMG/M
3300030625\|Ga0210259_11721325	Not Available	609	Open in IMG/M
3300030659\|Ga0316363_10049794	Not Available	2008	Open in IMG/M
3300030740\|Ga0265460_11449882	Not Available	680	Open in IMG/M
3300030740\|Ga0265460_11458987	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300030741\|Ga0265459_11884517	Not Available	709	Open in IMG/M
3300030741\|Ga0265459_12612409	Not Available	624	Open in IMG/M
3300030741\|Ga0265459_13680106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	538	Open in IMG/M
3300030743\|Ga0265461_12233531	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	635	Open in IMG/M
3300030743\|Ga0265461_12736310	Not Available	587	Open in IMG/M
3300030743\|Ga0265461_13067213	Not Available	561	Open in IMG/M
3300031028\|Ga0302180_10111926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1551	Open in IMG/M
3300031708\|Ga0310686_113924158	Not Available	649	Open in IMG/M
3300031708\|Ga0310686_118112357	Not Available	724	Open in IMG/M
3300032160\|Ga0311301_12028376	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300032160\|Ga0311301_12391280	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300032515\|Ga0348332_11037598	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1213	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.15%
Host-Associated	Host-Associated	0.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.19%
Aquatic	Environmental → Aquatic	27.97%
Plants	Host-Associated → Plants	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.64%
Freshwater	Environmental → Aquatic → Freshwater	22.03%
Thermal Springs	Environmental → Aquatic → Thermal Springs	5.93%
Peat	Environmental → Terrestrial → Peat	1.69%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.54%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	22.03%
Loam	Environmental → Terrestrial → Soil → Loam	15.25%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	5.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.85%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.05%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	16.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.25%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	5.93%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.08%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.69%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.80%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	16.10%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.17%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.78%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.93%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	5.93%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.08%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.08%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.54%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.69%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.69%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.85%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004478	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300019240	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019258	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019268	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025453	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)	Environmental	Open in IMG/M
3300025576	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300030623	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE043SO (Eukaryote Community Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300030625	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO122-ANR120SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_103315881	3300001593	Forest Soil	LDLIIETQNLTPASIAALLVIREEPELICDRCLDPDQIVVTLMEIAEIDETLALCGSCVSELPRGHHVA*
JGI12635J15846_105152861	3300001593	Forest Soil	LDLIIETEPLTPSSIAALCAARAQTMLICDRCQDPDEVVVATMEIPAMGETFTLCGDCTRELPRGFRVV*
JGI12635J15846_107583832	3300001593	Forest Soil	MELIVETQHLTHNLMAALCALREHPKPICDRCQDPDEIVVTTVEIREIDETFALCGVCTSELPRGFHLA*
JGIcombinedJ26739_1002701402	3300002245	Forest Soil	LDLIIETQNLTPASIAALLVIREEPELIXDRCLDPDQIVVTLMEIAEIDETLALCGSCVSELPRGHHVA*
Ga0062385_101196242	3300004080	Bog Forest Soil	VDLIIETEALTATAIAALLAVREQPELICDRCLNPDEIVVAKMEIAAIDEIFALCGSCARELPAGHHVA*
Ga0062389_1007502462	3300004092	Bog Forest Soil	VDLIVETETLTPAAIAALLAAREQPELICDRCVDPHAEVVAIMQIDAIEQTFALCGPCTSELPRGYQEV*
Ga0062389_1007854773	3300004092	Bog Forest Soil	LDLIVETEALTPSLIAALCAARDQTMLICDRCLDPDEVVVATMEIPAIDETFTLCGGCT
Ga0062389_1018744801	3300004092	Bog Forest Soil	LDLIIETTPLTPKLVVALCAAREQPELICDRCLNPDEIVVAAMEIDAIGETFALCGDCARALPRGFHVA*
Ga0068972_11917701	3300004478	Peatlands Soil	SSVADFQLANDARSKLDLIIETKSLTPAVVAAMCAARQMPELICDRCLDPDEIVVATMEIAAINEAFALCGNCARELPLGHHVA*
Ga0062388_1009877102	3300004635	Bog Forest Soil	LDLIIETEPLTPSLMAALCAARKQLELICDRCLDPDEFVVATMQISAIDETFTLCGSCARELPRGFHVA*
Ga0062388_1027704032	3300004635	Bog Forest Soil	LELIIETKSLTPAVVAAMCAAREMPELICDRCLDPDEIVVATMEIAAINETFALCGNCARELPRGHHVA*
Ga0070763_107207861	3300005610	Soil	VALCAAREQAELICDRCQNSDEIVVATVEIAAIGETLAVCGACMRELPKGFVIA*
Ga0070764_103349502	3300005712	Soil	LDLVIETTPLTPNLIVALCAAREQTELICDRCQNPDEIVVATVEISAIAETYAVCGPCMRELPKGFLIA*
Ga0070765_1001983563	3300006176	Soil	LDLIVETTPLTPDLTVALCAAREQPELICDRCQDPDEIVVATVEITAIGETLAICGACTRELPQGFAVA*
Ga0070765_1016352852	3300006176	Soil	LDLIIETTPLTPNLIVALCAAREQPELICDRCQNPDEIVVATVEISAIAETYAVCGPCMRELPKGFLIA*
Ga0073928_100877506	3300006893	Iron-Sulfur Acid Spring	MIELDLIIETEPLTPSLIAALCAARAQTMLICDRCQDPDAVVVSTMEIPAMDETFTLCGGCTRELPRGFRVV*
Ga0073928_102449402	3300006893	Iron-Sulfur Acid Spring	LDLIVETETLTPSLIAALCAARAQTMLICDRCQDPDEVVVATMEIPAMDETFTLCGGCTRELPRGFRVV*
Ga0073928_103852862	3300006893	Iron-Sulfur Acid Spring	LDLIVETETLTLSLIAALCAARDQTMLICDRCQDPDEVVVATMEIPAMDETFTLCRGCTRELPRGFRVV*
Ga0073928_112099702	3300006893	Iron-Sulfur Acid Spring	STEEHFQLARDWIELDLIVETEPLTPSLIAALCAARAQSMLICDRCQDPDEVVVATMEIPAMDETFTLCGGCTRELPRGFRVV*
Ga0099791_106746541	3300007255	Vadose Zone Soil	LDLIVETAPLTPSSIAALCAARAQTMLICDRCQDPNEVVVATMMISAMDETFALCGGCTRELPRGFRVV*
Ga0099795_100948381	3300007788	Vadose Zone Soil	LDLIVETETLTPILIAALCAARAQTMLICDRCPDPNEVVVATLMIPAMDETFALCGGCTRELPRGFRVV*
Ga0099795_102115171	3300007788	Vadose Zone Soil	LDLIVETEPLTPSLIAALCAARAQTMLICDRCRDPDAVVVATMEIPAMDETFTLCGSCTRALPRGYRVV*
Ga0116222_10833251	3300009521	Peatlands Soil	MKLDLLIETELLTPSLIADLCVAREQLELICDRCQDPDELVVAAMQILALEETFTLCAGCARELPRGYHVA*
Ga0116222_11859311	3300009521	Peatlands Soil	ANDARSKLELIIETKSLTPAVVAAMCAARQMPELICDRCLDPDEIVVATMEIVAINEAFALCGNCARELPRGHHVA*
Ga0116222_13881211	3300009521	Peatlands Soil	SAGELIVETQHLTPNLIAALCALREQPELICDRCQDPDEIVVVTMEIREIDENVALCGACTSELPPGFHMA*
Ga0116218_13696502	3300009522	Peatlands Soil	IKTKSLTPAVVAAMCAARQMPELICDRCLDPDEIVVATMEIVAINEAFALCGNCARELPRGHHVA*
Ga0116221_13906191	3300009523	Peatlands Soil	MDLIVETEPVTPTVMAALCAARGLRELICDRCQDPDEVVVTTMQIQPLEEAFTLCGNCARELPRGYHMA*
Ga0116102_10746541	3300009632	Peatland	SLTPAVVAAMCMARQMPELICDRCLDPDEIVVATMEIAAINEAFALCGNCARELPRGHHVA*
Ga0116118_10049989	3300009637	Peatland	VHFQLANDARSKLELIIETKSLTPAVVAAMCMARQMPELICDRCLDPDEIVVATMEIAAINEAFALCGNCARELPRGHHVA*
Ga0116132_11774661	3300009646	Peatland	TLCAAREQQELICDRCLNPDEIVVATMQILPIEEYFAVCGGCARELPSGLHAI*
Ga0116135_11411952	3300009665	Peatland	LELIVETVFLTPVVMAAMCIARDQPELICDRCQDPNEIVVSAMAIAAINETFALCGNCTRKLRSGFQVV*
Ga0116215_10334605	3300009672	Peatlands Soil	MRLKMDLIVETEPVTPTVMAALCAARGLRELICDRCQDPDEVVVTTMQIQPLEEAFTLCGNCARELPRGYHMA*
Ga0116224_101489582	3300009683	Peatlands Soil	LELIIETKSLTPAVVAAMCAARQMPELICDRCLDPDEIVVATMEIVAINEAFALCGNCARELPRGHHVARR*
Ga0116223_102020502	3300009839	Peatlands Soil	LELIIETKSLTPAVVAAMCAARQMPELICDRCLDPDEIVVATMEIAAINEAFALCGNCARELPRGHH
Ga0074044_106027191	3300010343	Bog Forest Soil	IELDLIIETEPLTPSLMAALCAARKQLELICDRCLDPDEFVVATMQISAIDETFTLCGSCARELPRGFHVA*
Ga0136449_1026331891	3300010379	Peatlands Soil	TPNLIAALCAARAQTMLICDRCQDPAEVVVATMEIPALDKTYTLCGGCTRELPRGFRVV*
Ga0136449_1036336961	3300010379	Peatlands Soil	LDLIIETEPLTPVLIAALCAARAQTMLICDRCQDPAEVVVATMEIPALDETFTLCGGCTRELPRGFRMV*
Ga0137391_112435921	3300011270	Vadose Zone Soil	MIELDLIVETEPLTPSLIAALCAARAQTMLICDRCENPDEVVVATMEIPAMDETFTLCGGCTRELPGGFRVV*
Ga0120118_11395001	3300012010	Permafrost	LDLIIETELLTPSLIAALCAARAQPMLICDRCQDPDEIVVSTMAISVIDETFTLCGGCVRELPR
Ga0137399_105809382	3300012203	Vadose Zone Soil	LDLIVETAPLTPSSIAALCAARAQTMLICDRCQDPDEVVVATMMISAMDKTFALCGGCTRELPRGFRVV*
Ga0137360_104771412	3300012361	Vadose Zone Soil	LDLIVETEPLTPSLIAALCAARAQTMLICDRCRDPDSVVVATMEIPAMDETFTLCGSCTRALPRGYRVV*
Ga0137397_101595112	3300012685	Vadose Zone Soil	LDLIVETEPLTPSLIAALCAARSQTMLICDRCRDPDAVVVATMEIPAMDETFTLCGSCTRALPRGYRVV*
Ga0137416_103668722	3300012927	Vadose Zone Soil	LDLIIEAEPLTPSLIAALCAARAQTMLICDRCRDPDAVVVATMEIPAMDETFTLCGSCTRALPRGYRVV*
Ga0120111_10346792	3300013764	Permafrost	LDLIIETELLTPSLIAALCAARAQPMLICDRCQDPDEIVVSTMAISVIDETFTLCGSCARELPRGFHAV*
Ga0181518_100475866	3300014156	Bog	LELIIETKSLTPAVVAAMCMARQMPELICDRCLDPDEIVVATMEIAAINEAFALCGNCARELPRGHHVA*
Ga0181537_100825371	3300014201	Bog	LELIVETVALTPVVTAAMCVARDQPELICDRCQDPDEIVVSAMAIEAIDKTFALCGNC
Ga0181537_103835111	3300014201	Bog	LTVKRRALVVSKGEKKLELIVETVFLTPVVMAAMCIARDQPELICDRCQDPNEIVVSAMAIAAINETFALCGNCTRKLRSGFQVV*
Ga0181537_107103251	3300014201	Bog	VDLIVETETLTATAIAALLAVREQPELICDRCQNPDEIVVAKMEIAAIDETFALCGTCARELPSGHHVA*
Ga0181537_107892072	3300014201	Bog	LELIVETVALTPVVMAEMCVARDQPELICDRCQDPDEIVVSAMAIAAIDETFALCGNCTRKLPSGFQVV*
Ga0157379_101090164	3300014968	Switchgrass Rhizosphere	MAELDLIVETEPLTPSLVAALCAARAQTMLICDRCQDPDEIVVATMEIPAMDETFTLCEGCTRELPRGYRVV*
Ga0137411_13189502	3300015052	Vadose Zone Soil	LDLIVETEPLTPSLIAALCAARAQTMLICDRCRDPDAVVVATMEIPAMDETFTLCGSCTRALPRGYCVV*
Ga0137418_106667772	3300015241	Vadose Zone Soil	MLTDSELTFQLARRQIELDLIVETLPLAPSSIAALCAARAQTILICDRCQDPHEAVVATIEIPAMDETFTLCAGCTRELPRGFRVPPSEARK*
Ga0137409_100921332	3300015245	Vadose Zone Soil	MIELDLIVETEPLTPSLIAALCAARAQTMLICDRCRDPDAVVVATMEIPAMDETFTLCGRCTRALPRGYRVV*
Ga0187856_10096355	3300017925	Peatland	VHFQLANDARSKLELIIETKSLTPAVVAAMCMARQMPELICDRCLDPDEIVVATMEIAAINEAFALCGNCARELPRGHHVA
Ga0187847_107506541	3300017948	Peatland	LELIVETVALTPVVTAAMCVARDQPELICDRCQDPDEIVVSAMAIEAIDKTFALCGNCTRELPSGFQVA
Ga0187883_101539312	3300018037	Peatland	LDVIIETTPLTPNLMVALCSAREQPELICDRCQDPDEIVVVTMQILPIEEPFALCGACVRELPRGFHVA
Ga0187858_108163302	3300018057	Peatland	LTPNLMVALCSAREQPELICDRCQDPDEIVVVTMQILPIEEPFALCGACARELPRGFHVA
Ga0181510_14113781	3300019240	Peatland	VKYCTLVVSKGESKLELIVETVALTPVVTAAMCVARDQPELICDRCQDPDEIVVSAMAIEAIDKTFALCGNCTRELPSGFQVA
Ga0181504_13040171	3300019258	Peatland	KGESKLELIVETVALTPVVTAAMCVARDQPELICDRCQDPDEIVVSAMAIEAIDKTFALCGNCTRELPSGFQVA
Ga0181514_14903301	3300019268	Peatland	LELIVETVFLTPVVMAAMCIARDQPELICDRCQDPNEIVVSAMAIAAINETFALCGNCTRKLRSGFQVV
Ga0193751_11434251	3300019888	Soil	LDLIVETETLTPSLIAALCAARAQTMLICDRCQDPDEVVVATIEIPAMDETFTLCGGCTRELPRGFRVV
Ga0179592_104910931	3300020199	Vadose Zone Soil	LDLIVETETLTPILIAALCAARAQTMLICDRCQDPNEVVVATMMISAMDETFALCGGCTRELPRGFRVV
Ga0179596_106219651	3300021086	Vadose Zone Soil	LDLIVETEPLTPSLIAALCAARAQTMLICGRCRDPDAVVVATMEIPAMDETFTLCGSCTRALPRGYRVV
Ga0210405_105017062	3300021171	Soil	RGMIELDLIIETEPLTPSLIAALCAARAQTMLICDRCQDPDAVVVSTMEILALDETFTLCGGCTGELPRGFRVV
Ga0210393_101010704	3300021401	Soil	LDLIIETTPLTPKLVVALCAAREQPELICDRCLNPDEIVVAAMEIDAIGETFALCGDCARALPRGFHVA
Ga0210393_101752231	3300021401	Soil	LDLIIETTPLTPNLIVALCAAREQPELICDRCQNPDEIVVATVEISAIAETYAVCGPCMRELPKGFLIA
Ga0210393_107090902	3300021401	Soil	LDLIIETTALTPNLIVALCAARAQSELICDRCHNRDEIVIATLEIVAIGETLAVCGACMRELPKGFVVA
Ga0210393_110019021	3300021401	Soil	ETTPLTPKLVVALCAAREQPELICDRCLNPDEIVVAAMEIDAIGETFALCGDCARALPRGFHVA
Ga0210391_109048052	3300021433	Soil	LDLIIETTPLTPKLVLALCAAREQPELICDRCLNPDEIVVAAMEIDAIGETFALCGDCARALPRGFHVA
Ga0210398_110102492	3300021477	Soil	LDLVIETTPLTTNLIVALCAAREQTELICDRCQNPDEIVVATVEISALAETYAVCGPCMRELPKGFLVA
Ga0210402_119649861	3300021478	Soil	MDLIVETEPVTPTVMAALCAARGLRELICDRCQDPDEVVVTTMQIQPLEDAFTLCGNCTRELPRGHHMA
Ga0210410_105505202	3300021479	Soil	LDLIVETETLTPILIAALRAARAQTMLICDRCRDPDEVVVATMVIPAMDKTFALCGCCTRELPHGFRVV
Ga0222729_10611851	3300022507	Soil	MRLKMDLIVETEPVTPTVMAALCAARGLRELICDRCQDPDEVVVTTMQIQPLEEAFTLCGNCARELPRGYHMA
Ga0212123_100467907	3300022557	Iron-Sulfur Acid Spring	MIELDLIIETEPLTPSLIAALCAARAQTMLICDRCQDPDAVVVSTMEIPAMDETFTLCGGCTRELPRGFRVV
Ga0212123_101177982	3300022557	Iron-Sulfur Acid Spring	LDLIVETETLTPSLIAALCAARAQTMLICDRCQDPDEVVVATMEIPAMDETFTLCGGCTRELPRGFRVV
Ga0212123_103998292	3300022557	Iron-Sulfur Acid Spring	LDLIVETETLTLSLIAALCAARDQTMLICDRCQDPDEVVVATMEIPAMDETFTLCRGCTRELPRGFRVV
Ga0208455_11031361	3300025453	Peatland	VVAAMCMARQMPELICDRCLDPDEIVVATMEIAAINEAFALCGNCARELPRGHHVA
Ga0208820_10074376	3300025576	Peatland	LELIIETKSLTPAVVAAMCMARQMPELICDRCLDPDEIVVATMEIAAINEAFALCGNCARELPRGHHVA
Ga0179587_105788381	3300026557	Vadose Zone Soil	LDLIVETEPLTPSLIAALCAARAQTMLICDRCRDPDAVVVATMEIPAMDETFTLCGSCTRALPRGYRVV
Ga0209179_11125882	3300027512	Vadose Zone Soil	LDLIVETEPLTPSLIAALCAARAQTMLICDRCRDPDAVVVATMEIPAMDETFTLCGSCTRALPR
Ga0208042_10069742	3300027568	Peatlands Soil	MKLDLLIETELLTPSLIADLCVAREQLELICDRCQDPDELVVAAMQILALEETFTLCAGCARELPRGYHVA
Ga0209528_11353851	3300027610	Forest Soil	LDLIIETTTLTPKLVVALCAAREQPELICDRCLNPDEIVVVAMEIDAIGETFALCGDCARALPLGFHVA
Ga0208044_11338892	3300027625	Peatlands Soil	LELIIETKSLTPAVVAAMCAARQMPELICDRCLDPDEIVVATMEIVAINEAFALCGNCARELPRGHHVARR
Ga0208827_10600212	3300027641	Peatlands Soil	LELIIETKSLTPAVVAAMCAARQMPELICDRCLDPDEIVVATMEIVAINEAFALCGNCARELPRGHHVA
Ga0209007_10787051	3300027652	Forest Soil	LDLVIETTPLTPNLIVALCAAREQTELICDRCQNPDEIVVATVEISALAETYAVCGPCMRELPKGFLVA
Ga0209118_12171781	3300027674	Forest Soil	LDLIIETEPLTPSSIAALCAARAQTMLICDRCQDPDEVVVATMEIPAMGETFTLCGDCTRELPRGFRVV
Ga0209011_11654121	3300027678	Forest Soil	MELIVEAQHLTHNLMAALCALREHPKPICDRCQDPDEIVVTTVEIREIDETFALCGVCTSELPRGFHLA
Ga0209446_10698192	3300027698	Bog Forest Soil	LDLIIETEPLTPSLMAALCAARKQLELICDRCLDPDEFVVATMQISAIDETFTLCGSCARELPRGFHVA
Ga0209139_101614541	3300027795	Bog Forest Soil	VDLIIETEALTATAIAALLAVREQPELICDRCLNPDEIVVAKMEIAAIDEIFALCGSCARELPAGHHVA
Ga0209517_102120672	3300027854	Peatlands Soil	MDLIVETEPVTPTVMAALCAARGLRELICDRCQDPDEVVVTTMQIQPLEEAFTLCGNCARELPRGYHMA
Ga0209169_100589191	3300027879	Soil	LDLIIETTPLTPNLIVALCAAREQTELIYDRCQNPDEIVVATVEISAIAETYAVCGPCMRELPKGFLIA
Ga0209169_100787362	3300027879	Soil	LDLIVETTPLTPDLTVALCAAREQPELICDRCQDPDEIVVATVEITAIGETLAICGACTRELPQGFAVA
Ga0209624_100441802	3300027895	Forest Soil	LDLIIETQNLTPASIAALLVIREEPELICDRCLDPDQIVVTLMEIAEIDETLALCGSCVSELPRGHHVA
Ga0209488_102308232	3300027903	Vadose Zone Soil	LDLIVETEPLTPSLIAALCAARAQTMLICDRCRDPDAVVVATMGIPAMDETFTLCGSCTRALPRGYRVV
Ga0209415_101401702	3300027905	Peatlands Soil	LELIIKTKSLTPAVVAAMCAARQMPELICDRCLDPDEIVVATMEIVAINEAFALCGNCARELPRGHHVA
Ga0209006_101121895	3300027908	Forest Soil	LDLIIETQNLTPASIAALLVIREEPELICDRCLDPDQIVVTLMEIAEIDETLALCG
Ga0209006_106889581	3300027908	Forest Soil	VDLIVETETLTATAIAALLAVREQPELICDRCLNPDEIVVAKMEIAAIDETFALCGTCARELPSGHHVA
Ga0209006_108272721	3300027908	Forest Soil	LDLIIETTPLTPSLIVALCAARQQPELVCDRCHNPNEIVVATVEIAAIGETYALCGACTRELPKGFQIA
Ga0137415_103763132	3300028536	Vadose Zone Soil	LDLIIEAEPLTPSLIAALCAARAQTMLICDRCRDPDAVVVATMEIPAMDETFTLCGSCTRALPRGYRVV
Ga0302225_101852642	3300028780	Palsa	VDLIIETEALTATAIAALLAVREQPELICDRCLNPDEIVVAKMEIAAINETFALCGSCARELPTGHHIA
Ga0265392_11063692	3300030623	Soil	LSFSKGTHNLDLIVETTPITPKLMLALCAAREQAELICDRCQNPDEIVVATVEIAAIGETFALCGACTRDLPKGFQVA
Ga0210259_116561241	3300030625	Soil	IETTPLTPKLVVALCAAREQPELICDRCLNPDEIVVAAMEIDAIGETFALCGDCARALPRGFHVA
Ga0210259_117213251	3300030625	Soil	LDLIIETTPLTPNLIVALCAAREQPELICDRCQNPDEIVVATVEIAAIGETYALCGTCTRELPQGFQVA
Ga0316363_100497943	3300030659	Peatlands Soil	VHFQLANDARSKLELIIETKSLTPAVVAAMCAARQMPELICDRCLDPDEIVVATMEIAAINEAFALCGNCARELPRGHHVARR
Ga0265460_114498822	3300030740	Soil	LTVKGRTLSVSKGTHNLDLIVETTPITPKLMLALCAAREQAELICDRCQNPDEIVVATVEIAAIGETFALCGACTRDLPKGFQVA
Ga0265460_114589871	3300030740	Soil	GGDFQSAKGQCPLDLIIETTPLTPKLVVALCAAREQPELICDRCLNPDEIVVAAMEIDAIGETFAFCGDCARALPRGFHVA
Ga0265459_118845171	3300030741	Soil	SKGTHNLDLIVETTPITPKLMLALCAAREQAELICDRCQNPDEIVVATVEIAAIGETFALCGACTRDLPKGFQVA
Ga0265459_126124091	3300030741	Soil	DFQSARGQCPLDLIIETTPLTPKLVVALCAAREQPELICDRCLNPDEIVVAAMEIDAIGETFALCGDCARALPRGFHVA
Ga0265459_136801061	3300030741	Soil	RDAFDVDLIVETETLTATAIAALLAVREQPELICDRCQNPDEIVVAKMEIAAIDETFALCGTCARELPSGHHVA
Ga0265461_122335312	3300030743	Soil	GDVLLDLIIETRPLTPNLTLALCNARKQPELICDRCLNPDEIVVAAMEIAAIGETFALCGACARQIPRGFHVA
Ga0265461_127363101	3300030743	Soil	LIIETTPLTPNLIVALCAAREQPELICDRCQNPDEIVVATVEISAIAETYAVCGPCMRELPRGFLIA
Ga0265461_130672131	3300030743	Soil	QLTGGDFQSAKGQCPLDLIIETTPLTPKLVVALCAAREQPELICDRCLNPDEIVVAAMEIDAIGETFALCGDCARALPRGFHVA
Ga0302180_101119261	3300031028	Palsa	TAIAALLAVREQPELICDRCLNPDEIVVAKMEIAAINETFALCGSCARELPTGHHIA
Ga0310686_1139241581	3300031708	Soil	LNLDLIIETERLTPSLIANLCVARMQSELICDRCQDPDEIVVMTISILPIEEPFALCGAC
Ga0310686_1181123571	3300031708	Soil	MDLIVETQPLTPGLIAVLCAAREQRELICDRCLDPDEMVVSAIEIAAMDETFALCGACMRELPRGFEVV
Ga0311301_120283761	3300032160	Peatlands Soil	LDLIIETEPLTPNLIAALCAARAQTMLICDRCQDPDEVVVATMEIPALDQTFTLCGGCTRELPRGFRVV
Ga0311301_123912801	3300032160	Peatlands Soil	LELIIKTKSLTPAVVAAMCAARQMPELICDRCLDPDEIVVATMEIAAINEAFALCGNCARELPRGHHVARR
Ga0348332_110375983	3300032515	Plant Litter	MPITPKLMVALCAARQQTELICDRCQNPDEIVVATVEIAAIGGTFALCGACTRDLPKGFQVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076309

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences